HEADER TOXIN 07-JUN-24 9C63 TITLE HIGH RESOLUTION STRUCTURE OF CYTIDINE DEAMINASE T6S TOXIN FROM TITLE 2 PSEUDOMONAS SYRINGAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SSDA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE; SOURCE 3 ORGANISM_TAXID: 317; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TOXIN, DNA BINDING, DEAMINASE, TOXIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.YIN,K.SHI,H.AIHARA REVDAT 1 12-NOV-25 9C63 0 JRNL AUTH L.YIN,Y.CHEN,K.SHI,E.BARRETO DURAN,R.S.HARRIS,H.AIHARA JRNL TITL STRUCTURAL BASIS FOR SEQUENCE CONTEXT-INDEPENDENT JRNL TITL 2 SINGLE-STRANDED DNA CYTOSINE DEAMINATION BY THE BACTERIAL JRNL TITL 3 TOXIN SSDA. JRNL REF NAT COMMUN V. 16 8841 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 41044082 JRNL DOI 10.1038/S41467-025-63943-9 REMARK 2 REMARK 2 RESOLUTION. 1.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.7 REMARK 3 NUMBER OF REFLECTIONS : 59522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.1400 - 3.7400 0.94 3033 168 0.1476 0.1617 REMARK 3 2 3.7400 - 2.9700 0.96 2951 161 0.1550 0.2014 REMARK 3 3 2.9700 - 2.5900 0.96 2935 141 0.1835 0.1996 REMARK 3 4 2.5900 - 2.3600 0.97 2944 169 0.1750 0.2107 REMARK 3 5 2.3600 - 2.1900 0.99 2972 151 0.1678 0.1927 REMARK 3 6 2.1900 - 2.0600 0.99 2945 195 0.1641 0.1893 REMARK 3 7 2.0600 - 1.9600 0.99 2981 149 0.1683 0.1901 REMARK 3 8 1.9600 - 1.8700 0.99 2995 173 0.1710 0.2169 REMARK 3 9 1.8700 - 1.8000 1.00 2933 187 0.1908 0.2128 REMARK 3 10 1.8000 - 1.7400 0.99 2958 152 0.1790 0.2408 REMARK 3 11 1.7400 - 1.6800 0.98 2885 180 0.1752 0.1869 REMARK 3 12 1.6800 - 1.6300 0.99 2955 150 0.1764 0.1864 REMARK 3 13 1.6300 - 1.5900 0.99 2928 162 0.1726 0.2043 REMARK 3 14 1.5900 - 1.5500 0.99 2933 165 0.1790 0.1982 REMARK 3 15 1.5500 - 1.5200 0.99 2948 148 0.1905 0.2306 REMARK 3 16 1.5200 - 1.4800 0.95 2866 144 0.2044 0.2360 REMARK 3 17 1.4800 - 1.4500 0.89 2615 128 0.2246 0.2496 REMARK 3 18 1.4500 - 1.4300 0.81 2414 105 0.2267 0.2264 REMARK 3 19 1.4300 - 1.4000 0.69 2059 100 0.2394 0.2536 REMARK 3 20 1.4000 - 1.3800 0.47 1404 77 0.2536 0.2707 REMARK 3 21 1.3800 - 1.3600 0.23 677 25 0.2717 0.3510 REMARK 3 22 1.3600 - 1.3400 0.05 155 6 0.2373 0.1917 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : 0.087 353 REMARK 3 PLANARITY : 0.007 437 REMARK 3 DIHEDRAL : 13.047 964 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9597 12.3672 42.7662 REMARK 3 T TENSOR REMARK 3 T11: 0.0609 T22: 0.1264 REMARK 3 T33: 0.0859 T12: 0.0121 REMARK 3 T13: -0.0033 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 3.5212 L22: 4.9758 REMARK 3 L33: 6.2702 L12: 3.3810 REMARK 3 L13: 2.5613 L23: 5.1737 REMARK 3 S TENSOR REMARK 3 S11: 0.0691 S12: -0.0682 S13: -0.0492 REMARK 3 S21: 0.1876 S22: -0.1320 S23: 0.1625 REMARK 3 S31: 0.1927 S32: -0.2263 S33: 0.1119 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 280 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6178 -6.6589 28.9013 REMARK 3 T TENSOR REMARK 3 T11: 0.5583 T22: 0.3657 REMARK 3 T33: 0.3953 T12: 0.0459 REMARK 3 T13: 0.0360 T23: -0.1235 REMARK 3 L TENSOR REMARK 3 L11: 6.3154 L22: 8.3457 REMARK 3 L33: 5.3491 L12: -0.6766 REMARK 3 L13: 2.7465 L23: 4.8908 REMARK 3 S TENSOR REMARK 3 S11: -0.4709 S12: 0.9531 S13: -0.7779 REMARK 3 S21: -0.9208 S22: -0.0137 S23: 0.2634 REMARK 3 S31: 0.4281 S32: -0.0937 S33: 0.5311 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 290 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8678 8.8105 31.9591 REMARK 3 T TENSOR REMARK 3 T11: 0.1195 T22: 0.2276 REMARK 3 T33: 0.1188 T12: -0.0077 REMARK 3 T13: -0.0310 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 2.0258 L22: 7.4151 REMARK 3 L33: 7.2182 L12: -0.0449 REMARK 3 L13: -0.5941 L23: 3.3019 REMARK 3 S TENSOR REMARK 3 S11: 0.0142 S12: 0.1049 S13: 0.0084 REMARK 3 S21: 0.0003 S22: 0.0001 S23: 0.2835 REMARK 3 S31: 0.2230 S32: -0.3743 S33: -0.0326 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 301 THROUGH 325 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7858 10.7983 21.6738 REMARK 3 T TENSOR REMARK 3 T11: 0.2400 T22: 0.3556 REMARK 3 T33: 0.1354 T12: 0.0238 REMARK 3 T13: -0.0244 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 3.0910 L22: 3.1628 REMARK 3 L33: 4.1759 L12: 1.1235 REMARK 3 L13: -0.5748 L23: -1.0917 REMARK 3 S TENSOR REMARK 3 S11: -0.1600 S12: 0.5147 S13: 0.1032 REMARK 3 S21: -0.5275 S22: 0.2338 S23: 0.2444 REMARK 3 S31: 0.2544 S32: -0.4634 S33: -0.0813 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 326 THROUGH 340 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4906 7.5376 18.3982 REMARK 3 T TENSOR REMARK 3 T11: 0.3435 T22: 0.4026 REMARK 3 T33: 0.2605 T12: 0.0118 REMARK 3 T13: 0.1092 T23: -0.0836 REMARK 3 L TENSOR REMARK 3 L11: 3.6515 L22: 5.4693 REMARK 3 L33: 4.4927 L12: -0.9980 REMARK 3 L13: -0.5473 L23: 0.7952 REMARK 3 S TENSOR REMARK 3 S11: -0.0591 S12: 0.6743 S13: -0.7354 REMARK 3 S21: -0.5504 S22: 0.3490 S23: -0.5885 REMARK 3 S31: 0.5815 S32: 0.3068 S33: -0.2173 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 341 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3093 15.5471 32.6977 REMARK 3 T TENSOR REMARK 3 T11: 0.0953 T22: 0.1868 REMARK 3 T33: 0.1426 T12: 0.0209 REMARK 3 T13: -0.0070 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 1.2370 L22: 2.1748 REMARK 3 L33: 2.0889 L12: 0.5942 REMARK 3 L13: 0.1108 L23: 0.2582 REMARK 3 S TENSOR REMARK 3 S11: -0.0170 S12: 0.1881 S13: 0.0214 REMARK 3 S21: -0.0894 S22: 0.0009 S23: -0.0835 REMARK 3 S31: -0.0463 S32: 0.0784 S33: 0.0160 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 402 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0827 10.3107 46.5017 REMARK 3 T TENSOR REMARK 3 T11: 0.2399 T22: 0.2264 REMARK 3 T33: 0.2150 T12: -0.0037 REMARK 3 T13: -0.0461 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 6.2429 L22: 4.4361 REMARK 3 L33: 3.2461 L12: 5.1999 REMARK 3 L13: -4.3305 L23: -3.5999 REMARK 3 S TENSOR REMARK 3 S11: 0.0362 S12: -0.2366 S13: -0.5888 REMARK 3 S21: -0.0194 S22: -0.2163 S23: -0.3393 REMARK 3 S31: 0.4884 S32: 0.1739 S33: 0.2717 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 255 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9801 14.9694 20.3182 REMARK 3 T TENSOR REMARK 3 T11: 0.1883 T22: 0.2255 REMARK 3 T33: 0.1752 T12: -0.0034 REMARK 3 T13: 0.0084 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 2.9504 L22: 4.5949 REMARK 3 L33: 3.5595 L12: 2.9466 REMARK 3 L13: 1.7861 L23: 3.4888 REMARK 3 S TENSOR REMARK 3 S11: 0.0290 S12: -0.0123 S13: -0.0500 REMARK 3 S21: -0.0693 S22: -0.2112 S23: 0.3739 REMARK 3 S31: 0.0462 S32: -0.4792 S33: 0.2462 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 280 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8339 3.0343 8.6818 REMARK 3 T TENSOR REMARK 3 T11: 0.1789 T22: 0.2113 REMARK 3 T33: 0.2441 T12: -0.0427 REMARK 3 T13: 0.0151 T23: -0.0816 REMARK 3 L TENSOR REMARK 3 L11: 2.7342 L22: 7.5343 REMARK 3 L33: 5.3623 L12: 0.2897 REMARK 3 L13: 0.8502 L23: 0.2440 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: 0.2579 S13: -0.5648 REMARK 3 S21: -0.2850 S22: -0.0477 S23: -0.0731 REMARK 3 S31: 0.4248 S32: -0.3325 S33: 0.0017 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 299 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9225 6.8944 0.6672 REMARK 3 T TENSOR REMARK 3 T11: 0.3324 T22: 0.5617 REMARK 3 T33: 0.2871 T12: 0.0096 REMARK 3 T13: -0.0580 T23: -0.1194 REMARK 3 L TENSOR REMARK 3 L11: 2.0741 L22: 1.6114 REMARK 3 L33: 0.8293 L12: -0.8665 REMARK 3 L13: -0.3909 L23: -0.8086 REMARK 3 S TENSOR REMARK 3 S11: 0.0609 S12: 1.2692 S13: -0.4122 REMARK 3 S21: -0.7069 S22: -0.2349 S23: 0.5294 REMARK 3 S31: 0.2921 S32: -0.7270 S33: 0.0534 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 315 THROUGH 408 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4707 14.8685 9.8298 REMARK 3 T TENSOR REMARK 3 T11: 0.1706 T22: 0.1329 REMARK 3 T33: 0.1327 T12: -0.0001 REMARK 3 T13: 0.0114 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.5195 L22: 1.8321 REMARK 3 L33: 3.2487 L12: -0.9699 REMARK 3 L13: -0.9422 L23: 1.4630 REMARK 3 S TENSOR REMARK 3 S11: 0.1060 S12: 0.1108 S13: 0.0657 REMARK 3 S21: -0.2080 S22: -0.0401 S23: -0.1255 REMARK 3 S31: -0.2106 S32: 0.0447 S33: -0.0456 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9C63 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1000284820. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59524 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.335 REMARK 200 RESOLUTION RANGE LOW (A) : 30.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.41 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.79600 REMARK 200 R SYM FOR SHELL (I) : 0.79600 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M SODIUM PHOSPHATE MONOBASIC REMARK 280 MONOHYDRATE, POTASSIUM PHOSPHATE DIBASIC PH 8.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.34350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.03050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.74250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.03050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.34350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.74250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 254 REMARK 465 HIS A 411 REMARK 465 HIS A 412 REMARK 465 HIS A 413 REMARK 465 HIS A 414 REMARK 465 HIS A 415 REMARK 465 MET B 254 REMARK 465 GLU B 409 REMARK 465 HIS B 410 REMARK 465 HIS B 411 REMARK 465 HIS B 412 REMARK 465 HIS B 413 REMARK 465 HIS B 414 REMARK 465 HIS B 415 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 504 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 300 OG REMARK 620 2 PO4 A 502 O4 154.8 REMARK 620 3 HOH A 629 O 136.7 60.6 REMARK 620 4 HOH A 700 O 84.1 86.7 137.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 346 ND1 REMARK 620 2 CYS A 367 SG 106.0 REMARK 620 3 CYS A 370 SG 106.9 115.1 REMARK 620 4 PO4 A 502 O3 111.7 106.4 110.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 503 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 300 OG REMARK 620 2 PO4 B 502 O2 147.9 REMARK 620 3 HOH B 640 O 126.7 58.3 REMARK 620 4 HOH B 708 O 93.4 84.6 139.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 346 ND1 REMARK 620 2 CYS B 367 SG 106.5 REMARK 620 3 CYS B 370 SG 107.9 115.1 REMARK 620 4 PO4 B 502 O3 109.4 106.7 111.0 REMARK 620 N 1 2 3 DBREF1 9C63 A 259 409 UNP A0A0Q0DAS4_PSEAP DBREF2 9C63 A A0A0Q0DAS4 260 410 DBREF1 9C63 B 259 409 UNP A0A0Q0DAS4_PSEAP DBREF2 9C63 B A0A0Q0DAS4 260 410 SEQADV 9C63 MET A 254 UNP A0A0Q0DAS INITIATING METHIONINE SEQADV 9C63 SER A 255 UNP A0A0Q0DAS EXPRESSION TAG SEQADV 9C63 GLN A 256 UNP A0A0Q0DAS EXPRESSION TAG SEQADV 9C63 ASP A 257 UNP A0A0Q0DAS EXPRESSION TAG SEQADV 9C63 PRO A 258 UNP A0A0Q0DAS EXPRESSION TAG SEQADV 9C63 IAS A 294 UNP A0A0Q0DAS ASN 295 CONFLICT SEQADV 9C63 ALA A 348 UNP A0A0Q0DAS GLU 349 ENGINEERED MUTATION SEQADV 9C63 HIS A 410 UNP A0A0Q0DAS EXPRESSION TAG SEQADV 9C63 HIS A 411 UNP A0A0Q0DAS EXPRESSION TAG SEQADV 9C63 HIS A 412 UNP A0A0Q0DAS EXPRESSION TAG SEQADV 9C63 HIS A 413 UNP A0A0Q0DAS EXPRESSION TAG SEQADV 9C63 HIS A 414 UNP A0A0Q0DAS EXPRESSION TAG SEQADV 9C63 HIS A 415 UNP A0A0Q0DAS EXPRESSION TAG SEQADV 9C63 MET B 254 UNP A0A0Q0DAS INITIATING METHIONINE SEQADV 9C63 SER B 255 UNP A0A0Q0DAS EXPRESSION TAG SEQADV 9C63 GLN B 256 UNP A0A0Q0DAS EXPRESSION TAG SEQADV 9C63 ASP B 257 UNP A0A0Q0DAS EXPRESSION TAG SEQADV 9C63 PRO B 258 UNP A0A0Q0DAS EXPRESSION TAG SEQADV 9C63 IAS B 294 UNP A0A0Q0DAS ASN 295 CONFLICT SEQADV 9C63 ALA B 348 UNP A0A0Q0DAS GLU 349 ENGINEERED MUTATION SEQADV 9C63 HIS B 410 UNP A0A0Q0DAS EXPRESSION TAG SEQADV 9C63 HIS B 411 UNP A0A0Q0DAS EXPRESSION TAG SEQADV 9C63 HIS B 412 UNP A0A0Q0DAS EXPRESSION TAG SEQADV 9C63 HIS B 413 UNP A0A0Q0DAS EXPRESSION TAG SEQADV 9C63 HIS B 414 UNP A0A0Q0DAS EXPRESSION TAG SEQADV 9C63 HIS B 415 UNP A0A0Q0DAS EXPRESSION TAG SEQRES 1 A 162 MET SER GLN ASP PRO LYS VAL SER ASN ILE ALA GLU SER SEQRES 2 A 162 GLU ALA ALA LEU GLY ARG ALA SER GLN ALA ARG ALA ASP SEQRES 3 A 162 LEU PRO GLN SER LYS GLU LEU LYS VAL LYS THR VAL SER SEQRES 4 A 162 SER IAS ASP LYS LYS THR LEU SER GLY TRP GLY ASN LYS SEQRES 5 A 162 LYS PRO GLU GLY TYR GLU ARG ILE SER ALA GLU GLN VAL SEQRES 6 A 162 LYS ALA LYS SER GLU GLU ILE GLY HIS GLU VAL LYS SER SEQRES 7 A 162 HIS PRO TYR ASP ARG ASP TYR LYS GLY GLN TYR PHE SER SEQRES 8 A 162 SER HIS ALA ALA LYS GLN MET SER ILE ALA SER PRO ASN SEQRES 9 A 162 HIS PRO LEU GLY VAL SER LYS PRO MET CYS THR ASP CYS SEQRES 10 A 162 GLN GLY TYR PHE SER GLN LEU ALA LYS TYR SER LYS VAL SEQRES 11 A 162 GLU GLN THR VAL ALA ASP PRO LYS ALA ILE ARG ILE PHE SEQRES 12 A 162 LYS THR ASP GLY SER VAL GLU THR ILE MET ARG SER GLU SEQRES 13 A 162 HIS HIS HIS HIS HIS HIS SEQRES 1 B 162 MET SER GLN ASP PRO LYS VAL SER ASN ILE ALA GLU SER SEQRES 2 B 162 GLU ALA ALA LEU GLY ARG ALA SER GLN ALA ARG ALA ASP SEQRES 3 B 162 LEU PRO GLN SER LYS GLU LEU LYS VAL LYS THR VAL SER SEQRES 4 B 162 SER IAS ASP LYS LYS THR LEU SER GLY TRP GLY ASN LYS SEQRES 5 B 162 LYS PRO GLU GLY TYR GLU ARG ILE SER ALA GLU GLN VAL SEQRES 6 B 162 LYS ALA LYS SER GLU GLU ILE GLY HIS GLU VAL LYS SER SEQRES 7 B 162 HIS PRO TYR ASP ARG ASP TYR LYS GLY GLN TYR PHE SER SEQRES 8 B 162 SER HIS ALA ALA LYS GLN MET SER ILE ALA SER PRO ASN SEQRES 9 B 162 HIS PRO LEU GLY VAL SER LYS PRO MET CYS THR ASP CYS SEQRES 10 B 162 GLN GLY TYR PHE SER GLN LEU ALA LYS TYR SER LYS VAL SEQRES 11 B 162 GLU GLN THR VAL ALA ASP PRO LYS ALA ILE ARG ILE PHE SEQRES 12 B 162 LYS THR ASP GLY SER VAL GLU THR ILE MET ARG SER GLU SEQRES 13 B 162 HIS HIS HIS HIS HIS HIS HET IAS A 294 8 HET IAS B 294 8 HET ZN A 501 1 HET PO4 A 502 5 HET EDO A 503 4 HET NA A 504 1 HET ZN B 501 1 HET PO4 B 502 5 HET NA B 503 1 HETNAM IAS BETA-L-ASPARTIC ACID HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN IAS L-ASPARTIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 1 IAS 2(C4 H7 N O4) FORMUL 3 ZN 2(ZN 2+) FORMUL 4 PO4 2(O4 P 3-) FORMUL 5 EDO C2 H6 O2 FORMUL 6 NA 2(NA 1+) FORMUL 10 HOH *342(H2 O) HELIX 1 AA1 ASP A 257 LEU A 280 1 24 HELIX 2 AA2 SER A 314 GLY A 326 1 13 HELIX 3 AA3 GLY A 340 SER A 345 1 6 HELIX 4 AA4 HIS A 346 SER A 355 1 10 HELIX 5 AA5 CYS A 367 LYS A 382 1 16 HELIX 6 AA6 ASP B 257 LEU B 280 1 24 HELIX 7 AA7 SER B 283 VAL B 288 1 6 HELIX 8 AA8 SER B 314 GLY B 326 1 13 HELIX 9 AA9 GLY B 340 SER B 345 1 6 HELIX 10 AB1 HIS B 346 SER B 355 1 10 HELIX 11 AB2 CYS B 367 LYS B 382 1 16 SHEET 1 AA1 6 LYS A 297 LEU A 299 0 SHEET 2 AA1 6 VAL A 291 SER A 293 -1 N SER A 292 O THR A 298 SHEET 3 AA1 6 LEU A 360 VAL A 362 -1 O GLY A 361 N SER A 293 SHEET 4 AA1 6 GLN A 385 ALA A 388 1 O ALA A 388 N LEU A 360 SHEET 5 AA1 6 ALA A 392 PHE A 396 -1 O PHE A 396 N GLN A 385 SHEET 6 AA1 6 VAL A 402 MET A 406 -1 O ILE A 405 N ILE A 393 SHEET 1 AA2 6 LYS B 297 LEU B 299 0 SHEET 2 AA2 6 VAL B 291 SER B 293 -1 N SER B 292 O THR B 298 SHEET 3 AA2 6 LEU B 360 VAL B 362 -1 O GLY B 361 N SER B 293 SHEET 4 AA2 6 GLN B 385 ALA B 388 1 O ALA B 388 N LEU B 360 SHEET 5 AA2 6 ALA B 392 PHE B 396 -1 O PHE B 396 N GLN B 385 SHEET 6 AA2 6 VAL B 402 MET B 406 -1 O GLU B 403 N ILE B 395 LINK C SER A 293 N IAS A 294 1555 1555 1.42 LINK CG IAS A 294 N ASP A 295 1555 1555 1.42 LINK C SER B 293 N IAS B 294 1555 1555 1.42 LINK CG IAS B 294 N ASP B 295 1555 1555 1.42 LINK OG SER A 300 NA NA A 504 1555 1555 2.05 LINK ND1 HIS A 346 ZN ZN A 501 1555 1555 2.16 LINK SG CYS A 367 ZN ZN A 501 1555 1555 2.29 LINK SG CYS A 370 ZN ZN A 501 1555 1555 2.32 LINK ZN ZN A 501 O3 PO4 A 502 1555 1555 1.97 LINK O4 PO4 A 502 NA NA A 504 1555 1555 2.31 LINK NA NA A 504 O HOH A 629 1555 1555 2.89 LINK NA NA A 504 O HOH A 700 1555 1555 2.20 LINK OG BSER B 300 NA NA B 503 1555 1555 2.01 LINK ND1 HIS B 346 ZN ZN B 501 1555 1555 2.12 LINK SG CYS B 367 ZN ZN B 501 1555 1555 2.29 LINK SG CYS B 370 ZN ZN B 501 1555 1555 2.32 LINK ZN ZN B 501 O3 PO4 B 502 1555 1555 1.98 LINK O2 PO4 B 502 NA NA B 503 1555 1555 2.29 LINK NA NA B 503 O HOH B 640 1555 1555 3.15 LINK NA NA B 503 O HOH B 708 1555 1555 2.19 CRYST1 52.687 73.485 78.061 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018980 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013608 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012810 0.00000 CONECT 294 298 CONECT 298 294 299 CONECT 299 298 300 302 CONECT 300 299 301 305 CONECT 301 300 CONECT 302 299 303 CONECT 303 302 304 306 CONECT 304 303 CONECT 305 300 CONECT 306 303 CONECT 352 2445 CONECT 728 2435 CONECT 879 2435 CONECT 900 2435 CONECT 1504 1508 CONECT 1508 1504 1509 CONECT 1509 1508 1510 1512 CONECT 1510 1509 1511 1515 CONECT 1511 1510 CONECT 1512 1509 1513 CONECT 1513 1512 1514 1516 CONECT 1514 1513 CONECT 1515 1510 CONECT 1516 1513 CONECT 1568 2452 CONECT 1953 2446 CONECT 2111 2446 CONECT 2132 2446 CONECT 2435 728 879 900 2439 CONECT 2436 2437 2438 2439 2440 CONECT 2437 2436 CONECT 2438 2436 CONECT 2439 2435 2436 CONECT 2440 2436 2445 CONECT 2441 2442 2443 CONECT 2442 2441 CONECT 2443 2441 2444 CONECT 2444 2443 CONECT 2445 352 2440 2481 2552 CONECT 2446 1953 2111 2132 2450 CONECT 2447 2448 2449 2450 2451 CONECT 2448 2447 CONECT 2449 2447 2452 CONECT 2450 2446 2447 CONECT 2451 2447 CONECT 2452 1568 2449 2681 2749 CONECT 2481 2445 CONECT 2552 2445 CONECT 2681 2452 CONECT 2749 2452 MASTER 446 0 9 11 12 0 0 6 2759 2 50 26 END