data_9C6K # _entry.id 9C6K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9C6K pdb_00009c6k 10.2210/pdb9c6k/pdb WWPDB D_1000284893 ? ? EMDB EMD-45249 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-12-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9C6K _pdbx_database_status.recvd_initial_deposition_date 2024-06-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB 'Cryo-EM structure of the TPP riboswitch embedded in an RNA scaffold bound to thiamine pyrophosphate' EMD-45249 'associated EM volume' PDB 'Cryo-EM structure of the TPP riboswitch embedded in an RNA scaffold bound to thiamine pyrophosphate' 9C6K unspecified EMDB 'Group IIC intron embedded with the TPP riboswitch' EMD-45248 'other EM volume' PDB 'Group IIC intron embedded with the TPP riboswitch' 9C6J unspecified EMDB 'Cryo-EM structure of a group IIC intron RNA' EMD-45247 'other EM volume' PDB 'Cryo-EM structure of a group IIC intron RNA' 9C6I unspecified EMDB 'Cryo-EM structure of the apo TPP riboswitch embedded in an RNA scaffold' EMD-45250 'other EM volume' EMDB 'Cryo-EM Structure of a group IIC intron embedded in an RNP scaffold' EMD-45251 'other EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email ntoor@ucsd.edu _pdbx_contact_author.name_first Navtej _pdbx_contact_author.name_last Toor _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-6134-163X # _audit_author.name 'Toor, N.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biorxiv _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2692-8205 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Scaffold-enabled high-resolution cryo-EM structure determination of RNA.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1101/2024.06.10.598011 _citation.pdbx_database_id_PubMed 38915706 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Haack, D.B.' 1 0000-0002-4926-7772 primary 'Rudolfs, B.' 2 0000-0002-8791-9487 primary 'Jin, S.' 3 0009-0006-2034-6940 primary 'Weeks, K.M.' 4 0000-0002-6748-9985 primary 'Toor, N.' 5 0000-0002-6134-163X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TPP riboswitch embedded in an RNA scaffold bound to thiamine pyrophosphate' 161102.484 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 6 ? ? ? ? 3 non-polymer syn 'THIAMINE DIPHOSPHATE' 425.314 1 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;UUAUGUGUGCCCGGCAUGGGUGCAGUCUAUAGGGUGAGAGUCCCGAACUGUGAAGGCAGAAGUAACAGUUAGCCUAACGC AAGGGUGUCCGUGGCGACAUGGAAUCUGAAGGAAGCGGACGGCAAACCUUCGGUCUGAGGAACACGAACUUCAUAUGAGG CUAGGUAUCAAUGGAUGAGUUUGCAUAACAAAACAAAGUCCUUUCUGCCAAAGUUGGUACAGAGUAAAUGAAGCAGAUUG AUGAAGGGAAAGACUGCAUUCUUACCCGGGGAGGUCUGGAAACAGAAGUCAGCAGAAGUCAUAGUACCCUCAGUACUCGG GGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUGCUGAGGGGA AGGACGGAACAAGUAUGGCGUUCGCGCCUAAGCUUGAACCACCGUAUACCGAACGGUACGUACGGUGGUGUGAGAGGAGU UCGCUCUACUCUAUUAG ; _entity_poly.pdbx_seq_one_letter_code_can ;UUAUGUGUGCCCGGCAUGGGUGCAGUCUAUAGGGUGAGAGUCCCGAACUGUGAAGGCAGAAGUAACAGUUAGCCUAACGC AAGGGUGUCCGUGGCGACAUGGAAUCUGAAGGAAGCGGACGGCAAACCUUCGGUCUGAGGAACACGAACUUCAUAUGAGG CUAGGUAUCAAUGGAUGAGUUUGCAUAACAAAACAAAGUCCUUUCUGCCAAAGUUGGUACAGAGUAAAUGAAGCAGAUUG AUGAAGGGAAAGACUGCAUUCUUACCCGGGGAGGUCUGGAAACAGAAGUCAGCAGAAGUCAUAGUACCCUCAGUACUCGG GGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUGCUGAGGGGA AGGACGGAACAAGUAUGGCGUUCGCGCCUAAGCUUGAACCACCGUAUACCGAACGGUACGUACGGUGGUGUGAGAGGAGU UCGCUCUACUCUAUUAG ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'THIAMINE DIPHOSPHATE' TPP 4 'SODIUM ION' NA # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 A n 1 4 U n 1 5 G n 1 6 U n 1 7 G n 1 8 U n 1 9 G n 1 10 C n 1 11 C n 1 12 C n 1 13 G n 1 14 G n 1 15 C n 1 16 A n 1 17 U n 1 18 G n 1 19 G n 1 20 G n 1 21 U n 1 22 G n 1 23 C n 1 24 A n 1 25 G n 1 26 U n 1 27 C n 1 28 U n 1 29 A n 1 30 U n 1 31 A n 1 32 G n 1 33 G n 1 34 G n 1 35 U n 1 36 G n 1 37 A n 1 38 G n 1 39 A n 1 40 G n 1 41 U n 1 42 C n 1 43 C n 1 44 C n 1 45 G n 1 46 A n 1 47 A n 1 48 C n 1 49 U n 1 50 G n 1 51 U n 1 52 G n 1 53 A n 1 54 A n 1 55 G n 1 56 G n 1 57 C n 1 58 A n 1 59 G n 1 60 A n 1 61 A n 1 62 G n 1 63 U n 1 64 A n 1 65 A n 1 66 C n 1 67 A n 1 68 G n 1 69 U n 1 70 U n 1 71 A n 1 72 G n 1 73 C n 1 74 C n 1 75 U n 1 76 A n 1 77 A n 1 78 C n 1 79 G n 1 80 C n 1 81 A n 1 82 A n 1 83 G n 1 84 G n 1 85 G n 1 86 U n 1 87 G n 1 88 U n 1 89 C n 1 90 C n 1 91 G n 1 92 U n 1 93 G n 1 94 G n 1 95 C n 1 96 G n 1 97 A n 1 98 C n 1 99 A n 1 100 U n 1 101 G n 1 102 G n 1 103 A n 1 104 A n 1 105 U n 1 106 C n 1 107 U n 1 108 G n 1 109 A n 1 110 A n 1 111 G n 1 112 G n 1 113 A n 1 114 A n 1 115 G n 1 116 C n 1 117 G n 1 118 G n 1 119 A n 1 120 C n 1 121 G n 1 122 G n 1 123 C n 1 124 A n 1 125 A n 1 126 A n 1 127 C n 1 128 C n 1 129 U n 1 130 U n 1 131 C n 1 132 G n 1 133 G n 1 134 U n 1 135 C n 1 136 U n 1 137 G n 1 138 A n 1 139 G n 1 140 G n 1 141 A n 1 142 A n 1 143 C n 1 144 A n 1 145 C n 1 146 G n 1 147 A n 1 148 A n 1 149 C n 1 150 U n 1 151 U n 1 152 C n 1 153 A n 1 154 U n 1 155 A n 1 156 U n 1 157 G n 1 158 A n 1 159 G n 1 160 G n 1 161 C n 1 162 U n 1 163 A n 1 164 G n 1 165 G n 1 166 U n 1 167 A n 1 168 U n 1 169 C n 1 170 A n 1 171 A n 1 172 U n 1 173 G n 1 174 G n 1 175 A n 1 176 U n 1 177 G n 1 178 A n 1 179 G n 1 180 U n 1 181 U n 1 182 U n 1 183 G n 1 184 C n 1 185 A n 1 186 U n 1 187 A n 1 188 A n 1 189 C n 1 190 A n 1 191 A n 1 192 A n 1 193 A n 1 194 C n 1 195 A n 1 196 A n 1 197 A n 1 198 G n 1 199 U n 1 200 C n 1 201 C n 1 202 U n 1 203 U n 1 204 U n 1 205 C n 1 206 U n 1 207 G n 1 208 C n 1 209 C n 1 210 A n 1 211 A n 1 212 A n 1 213 G n 1 214 U n 1 215 U n 1 216 G n 1 217 G n 1 218 U n 1 219 A n 1 220 C n 1 221 A n 1 222 G n 1 223 A n 1 224 G n 1 225 U n 1 226 A n 1 227 A n 1 228 A n 1 229 U n 1 230 G n 1 231 A n 1 232 A n 1 233 G n 1 234 C n 1 235 A n 1 236 G n 1 237 A n 1 238 U n 1 239 U n 1 240 G n 1 241 A n 1 242 U n 1 243 G n 1 244 A n 1 245 A n 1 246 G n 1 247 G n 1 248 G n 1 249 A n 1 250 A n 1 251 A n 1 252 G n 1 253 A n 1 254 C n 1 255 U n 1 256 G n 1 257 C n 1 258 A n 1 259 U n 1 260 U n 1 261 C n 1 262 U n 1 263 U n 1 264 A n 1 265 C n 1 266 C n 1 267 C n 1 268 G n 1 269 G n 1 270 G n 1 271 G n 1 272 A n 1 273 G n 1 274 G n 1 275 U n 1 276 C n 1 277 U n 1 278 G n 1 279 G n 1 280 A n 1 281 A n 1 282 A n 1 283 C n 1 284 A n 1 285 G n 1 286 A n 1 287 A n 1 288 G n 1 289 U n 1 290 C n 1 291 A n 1 292 G n 1 293 C n 1 294 A n 1 295 G n 1 296 A n 1 297 A n 1 298 G n 1 299 U n 1 300 C n 1 301 A n 1 302 U n 1 303 A n 1 304 G n 1 305 U n 1 306 A n 1 307 C n 1 308 C n 1 309 C n 1 310 U n 1 311 C n 1 312 A n 1 313 G n 1 314 U n 1 315 A n 1 316 C n 1 317 U n 1 318 C n 1 319 G n 1 320 G n 1 321 G n 1 322 G n 1 323 U n 1 324 G n 1 325 C n 1 326 C n 1 327 C n 1 328 U n 1 329 U n 1 330 C n 1 331 U n 1 332 G n 1 333 C n 1 334 G n 1 335 U n 1 336 G n 1 337 A n 1 338 A n 1 339 G n 1 340 G n 1 341 C n 1 342 U n 1 343 G n 1 344 A n 1 345 G n 1 346 A n 1 347 A n 1 348 A n 1 349 U n 1 350 A n 1 351 C n 1 352 C n 1 353 C n 1 354 G n 1 355 U n 1 356 A n 1 357 U n 1 358 C n 1 359 A n 1 360 C n 1 361 C n 1 362 U n 1 363 G n 1 364 A n 1 365 U n 1 366 C n 1 367 U n 1 368 G n 1 369 G n 1 370 A n 1 371 U n 1 372 A n 1 373 A n 1 374 U n 1 375 G n 1 376 C n 1 377 C n 1 378 A n 1 379 G n 1 380 C n 1 381 G n 1 382 U n 1 383 A n 1 384 G n 1 385 G n 1 386 G n 1 387 A n 1 388 A n 1 389 G n 1 390 U n 1 391 G n 1 392 C n 1 393 U n 1 394 G n 1 395 A n 1 396 G n 1 397 G n 1 398 G n 1 399 G n 1 400 A n 1 401 A n 1 402 G n 1 403 G n 1 404 A n 1 405 C n 1 406 G n 1 407 G n 1 408 A n 1 409 A n 1 410 C n 1 411 A n 1 412 A n 1 413 G n 1 414 U n 1 415 A n 1 416 U n 1 417 G n 1 418 G n 1 419 C n 1 420 G n 1 421 U n 1 422 U n 1 423 C n 1 424 G n 1 425 C n 1 426 G n 1 427 C n 1 428 C n 1 429 U n 1 430 A n 1 431 A n 1 432 G n 1 433 C n 1 434 U n 1 435 U n 1 436 G n 1 437 A n 1 438 A n 1 439 C n 1 440 C n 1 441 A n 1 442 C n 1 443 C n 1 444 G n 1 445 U n 1 446 A n 1 447 U n 1 448 A n 1 449 C n 1 450 C n 1 451 G n 1 452 A n 1 453 A n 1 454 C n 1 455 G n 1 456 G n 1 457 U n 1 458 A n 1 459 C n 1 460 G n 1 461 U n 1 462 A n 1 463 C n 1 464 G n 1 465 G n 1 466 U n 1 467 G n 1 468 G n 1 469 U n 1 470 G n 1 471 U n 1 472 G n 1 473 A n 1 474 G n 1 475 A n 1 476 G n 1 477 G n 1 478 A n 1 479 G n 1 480 U n 1 481 U n 1 482 C n 1 483 G n 1 484 C n 1 485 U n 1 486 C n 1 487 U n 1 488 A n 1 489 C n 1 490 U n 1 491 C n 1 492 U n 1 493 A n 1 494 U n 1 495 U n 1 496 A n 1 497 G n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 497 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 TPP non-polymer . 'THIAMINE DIPHOSPHATE' ? 'C12 H19 N4 O7 P2 S 1' 425.314 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 -302 ? ? ? X . n A 1 2 U 2 -301 ? ? ? X . n A 1 3 A 3 -300 ? ? ? X . n A 1 4 U 4 -299 ? ? ? X . n A 1 5 G 5 -298 ? ? ? X . n A 1 6 U 6 -297 ? ? ? X . n A 1 7 G 7 -296 ? ? ? X . n A 1 8 U 8 -295 ? ? ? X . n A 1 9 G 9 -294 ? ? ? X . n A 1 10 C 10 -293 ? ? ? X . n A 1 11 C 11 -292 ? ? ? X . n A 1 12 C 12 -291 ? ? ? X . n A 1 13 G 13 -290 ? ? ? X . n A 1 14 G 14 -289 ? ? ? X . n A 1 15 C 15 -288 ? ? ? X . n A 1 16 A 16 -287 ? ? ? X . n A 1 17 U 17 -286 ? ? ? X . n A 1 18 G 18 -285 ? ? ? X . n A 1 19 G 19 -284 ? ? ? X . n A 1 20 G 20 -283 ? ? ? X . n A 1 21 U 21 -282 ? ? ? X . n A 1 22 G 22 -281 ? ? ? X . n A 1 23 C 23 -280 ? ? ? X . n A 1 24 A 24 -279 ? ? ? X . n A 1 25 G 25 -278 ? ? ? X . n A 1 26 U 26 -277 ? ? ? X . n A 1 27 C 27 -276 ? ? ? X . n A 1 28 U 28 -275 ? ? ? X . n A 1 29 A 29 -274 ? ? ? X . n A 1 30 U 30 -273 ? ? ? X . n A 1 31 A 31 -272 ? ? ? X . n A 1 32 G 32 -271 ? ? ? X . n A 1 33 G 33 -270 ? ? ? X . n A 1 34 G 34 -269 ? ? ? X . n A 1 35 U 35 -268 ? ? ? X . n A 1 36 G 36 -267 ? ? ? X . n A 1 37 A 37 -266 ? ? ? X . n A 1 38 G 38 -265 ? ? ? X . n A 1 39 A 39 -264 ? ? ? X . n A 1 40 G 40 -263 ? ? ? X . n A 1 41 U 41 -262 ? ? ? X . n A 1 42 C 42 -261 ? ? ? X . n A 1 43 C 43 -260 ? ? ? X . n A 1 44 C 44 -259 ? ? ? X . n A 1 45 G 45 -258 ? ? ? X . n A 1 46 A 46 -257 ? ? ? X . n A 1 47 A 47 -256 ? ? ? X . n A 1 48 C 48 -255 ? ? ? X . n A 1 49 U 49 -254 ? ? ? X . n A 1 50 G 50 -253 ? ? ? X . n A 1 51 U 51 -252 ? ? ? X . n A 1 52 G 52 -251 ? ? ? X . n A 1 53 A 53 -250 ? ? ? X . n A 1 54 A 54 -249 ? ? ? X . n A 1 55 G 55 -248 ? ? ? X . n A 1 56 G 56 -247 ? ? ? X . n A 1 57 C 57 -246 ? ? ? X . n A 1 58 A 58 -245 ? ? ? X . n A 1 59 G 59 -244 ? ? ? X . n A 1 60 A 60 -243 ? ? ? X . n A 1 61 A 61 -242 ? ? ? X . n A 1 62 G 62 -241 ? ? ? X . n A 1 63 U 63 -240 ? ? ? X . n A 1 64 A 64 -239 ? ? ? X . n A 1 65 A 65 -238 ? ? ? X . n A 1 66 C 66 -237 ? ? ? X . n A 1 67 A 67 -236 ? ? ? X . n A 1 68 G 68 -235 ? ? ? X . n A 1 69 U 69 -234 ? ? ? X . n A 1 70 U 70 -233 ? ? ? X . n A 1 71 A 71 -232 ? ? ? X . n A 1 72 G 72 -231 ? ? ? X . n A 1 73 C 73 -230 ? ? ? X . n A 1 74 C 74 -229 ? ? ? X . n A 1 75 U 75 -228 ? ? ? X . n A 1 76 A 76 -227 ? ? ? X . n A 1 77 A 77 -226 ? ? ? X . n A 1 78 C 78 -225 ? ? ? X . n A 1 79 G 79 -224 ? ? ? X . n A 1 80 C 80 -223 ? ? ? X . n A 1 81 A 81 -222 ? ? ? X . n A 1 82 A 82 -221 ? ? ? X . n A 1 83 G 83 -220 ? ? ? X . n A 1 84 G 84 -219 ? ? ? X . n A 1 85 G 85 -218 ? ? ? X . n A 1 86 U 86 -217 ? ? ? X . n A 1 87 G 87 -216 ? ? ? X . n A 1 88 U 88 -215 ? ? ? X . n A 1 89 C 89 -214 ? ? ? X . n A 1 90 C 90 -213 ? ? ? X . n A 1 91 G 91 -212 ? ? ? X . n A 1 92 U 92 -211 ? ? ? X . n A 1 93 G 93 -210 ? ? ? X . n A 1 94 G 94 -209 ? ? ? X . n A 1 95 C 95 -208 ? ? ? X . n A 1 96 G 96 -207 ? ? ? X . n A 1 97 A 97 -206 ? ? ? X . n A 1 98 C 98 -205 ? ? ? X . n A 1 99 A 99 -204 ? ? ? X . n A 1 100 U 100 -203 ? ? ? X . n A 1 101 G 101 -202 ? ? ? X . n A 1 102 G 102 -201 ? ? ? X . n A 1 103 A 103 -200 ? ? ? X . n A 1 104 A 104 -199 ? ? ? X . n A 1 105 U 105 -198 ? ? ? X . n A 1 106 C 106 -197 ? ? ? X . n A 1 107 U 107 -196 ? ? ? X . n A 1 108 G 108 -195 ? ? ? X . n A 1 109 A 109 -194 ? ? ? X . n A 1 110 A 110 -193 ? ? ? X . n A 1 111 G 111 -192 ? ? ? X . n A 1 112 G 112 -191 ? ? ? X . n A 1 113 A 113 -190 ? ? ? X . n A 1 114 A 114 -189 ? ? ? X . n A 1 115 G 115 -188 ? ? ? X . n A 1 116 C 116 -187 ? ? ? X . n A 1 117 G 117 -186 ? ? ? X . n A 1 118 G 118 -185 ? ? ? X . n A 1 119 A 119 -184 ? ? ? X . n A 1 120 C 120 -183 ? ? ? X . n A 1 121 G 121 -182 ? ? ? X . n A 1 122 G 122 -181 ? ? ? X . n A 1 123 C 123 -180 ? ? ? X . n A 1 124 A 124 -179 ? ? ? X . n A 1 125 A 125 -178 ? ? ? X . n A 1 126 A 126 -177 ? ? ? X . n A 1 127 C 127 -176 ? ? ? X . n A 1 128 C 128 -175 ? ? ? X . n A 1 129 U 129 -174 ? ? ? X . n A 1 130 U 130 -173 ? ? ? X . n A 1 131 C 131 -172 ? ? ? X . n A 1 132 G 132 -171 ? ? ? X . n A 1 133 G 133 -170 ? ? ? X . n A 1 134 U 134 -169 ? ? ? X . n A 1 135 C 135 -168 ? ? ? X . n A 1 136 U 136 -167 ? ? ? X . n A 1 137 G 137 -166 ? ? ? X . n A 1 138 A 138 -165 ? ? ? X . n A 1 139 G 139 -164 ? ? ? X . n A 1 140 G 140 -163 ? ? ? X . n A 1 141 A 141 -162 ? ? ? X . n A 1 142 A 142 -161 ? ? ? X . n A 1 143 C 143 -160 ? ? ? X . n A 1 144 A 144 -159 ? ? ? X . n A 1 145 C 145 -158 ? ? ? X . n A 1 146 G 146 -157 ? ? ? X . n A 1 147 A 147 -156 ? ? ? X . n A 1 148 A 148 -155 ? ? ? X . n A 1 149 C 149 -154 ? ? ? X . n A 1 150 U 150 -153 ? ? ? X . n A 1 151 U 151 -152 ? ? ? X . n A 1 152 C 152 -151 ? ? ? X . n A 1 153 A 153 -150 ? ? ? X . n A 1 154 U 154 -149 ? ? ? X . n A 1 155 A 155 -148 ? ? ? X . n A 1 156 U 156 -147 ? ? ? X . n A 1 157 G 157 -146 ? ? ? X . n A 1 158 A 158 -145 ? ? ? X . n A 1 159 G 159 -144 ? ? ? X . n A 1 160 G 160 -143 ? ? ? X . n A 1 161 C 161 -142 ? ? ? X . n A 1 162 U 162 -141 ? ? ? X . n A 1 163 A 163 -140 ? ? ? X . n A 1 164 G 164 -139 ? ? ? X . n A 1 165 G 165 -138 ? ? ? X . n A 1 166 U 166 -137 ? ? ? X . n A 1 167 A 167 -136 ? ? ? X . n A 1 168 U 168 -135 ? ? ? X . n A 1 169 C 169 -134 ? ? ? X . n A 1 170 A 170 -133 ? ? ? X . n A 1 171 A 171 -132 ? ? ? X . n A 1 172 U 172 -131 ? ? ? X . n A 1 173 G 173 -130 ? ? ? X . n A 1 174 G 174 -129 ? ? ? X . n A 1 175 A 175 -128 ? ? ? X . n A 1 176 U 176 -127 ? ? ? X . n A 1 177 G 177 -126 ? ? ? X . n A 1 178 A 178 -125 ? ? ? X . n A 1 179 G 179 -124 ? ? ? X . n A 1 180 U 180 -123 ? ? ? X . n A 1 181 U 181 -122 ? ? ? X . n A 1 182 U 182 -121 ? ? ? X . n A 1 183 G 183 -120 ? ? ? X . n A 1 184 C 184 -119 ? ? ? X . n A 1 185 A 185 -118 ? ? ? X . n A 1 186 U 186 -117 ? ? ? X . n A 1 187 A 187 -116 ? ? ? X . n A 1 188 A 188 -115 ? ? ? X . n A 1 189 C 189 -114 ? ? ? X . n A 1 190 A 190 -113 ? ? ? X . n A 1 191 A 191 -112 ? ? ? X . n A 1 192 A 192 -111 ? ? ? X . n A 1 193 A 193 -110 ? ? ? X . n A 1 194 C 194 -109 ? ? ? X . n A 1 195 A 195 -108 ? ? ? X . n A 1 196 A 196 -107 ? ? ? X . n A 1 197 A 197 -106 ? ? ? X . n A 1 198 G 198 -105 ? ? ? X . n A 1 199 U 199 -104 ? ? ? X . n A 1 200 C 200 -103 ? ? ? X . n A 1 201 C 201 -102 ? ? ? X . n A 1 202 U 202 -101 ? ? ? X . n A 1 203 U 203 -100 ? ? ? X . n A 1 204 U 204 -99 ? ? ? X . n A 1 205 C 205 -98 ? ? ? X . n A 1 206 U 206 -97 ? ? ? X . n A 1 207 G 207 -96 ? ? ? X . n A 1 208 C 208 -95 ? ? ? X . n A 1 209 C 209 -94 ? ? ? X . n A 1 210 A 210 -93 ? ? ? X . n A 1 211 A 211 -92 ? ? ? X . n A 1 212 A 212 -91 ? ? ? X . n A 1 213 G 213 -90 ? ? ? X . n A 1 214 U 214 -89 ? ? ? X . n A 1 215 U 215 -88 ? ? ? X . n A 1 216 G 216 -87 ? ? ? X . n A 1 217 G 217 -86 ? ? ? X . n A 1 218 U 218 -85 ? ? ? X . n A 1 219 A 219 -84 ? ? ? X . n A 1 220 C 220 -83 ? ? ? X . n A 1 221 A 221 -82 ? ? ? X . n A 1 222 G 222 -81 ? ? ? X . n A 1 223 A 223 -80 ? ? ? X . n A 1 224 G 224 -79 ? ? ? X . n A 1 225 U 225 -78 ? ? ? X . n A 1 226 A 226 -77 ? ? ? X . n A 1 227 A 227 -76 ? ? ? X . n A 1 228 A 228 -75 ? ? ? X . n A 1 229 U 229 -74 ? ? ? X . n A 1 230 G 230 -73 ? ? ? X . n A 1 231 A 231 -72 ? ? ? X . n A 1 232 A 232 -71 ? ? ? X . n A 1 233 G 233 -70 ? ? ? X . n A 1 234 C 234 -69 ? ? ? X . n A 1 235 A 235 -68 ? ? ? X . n A 1 236 G 236 -67 ? ? ? X . n A 1 237 A 237 -66 ? ? ? X . n A 1 238 U 238 -65 ? ? ? X . n A 1 239 U 239 -64 ? ? ? X . n A 1 240 G 240 -63 ? ? ? X . n A 1 241 A 241 -62 ? ? ? X . n A 1 242 U 242 -61 ? ? ? X . n A 1 243 G 243 -60 ? ? ? X . n A 1 244 A 244 -59 ? ? ? X . n A 1 245 A 245 -58 ? ? ? X . n A 1 246 G 246 -57 ? ? ? X . n A 1 247 G 247 -56 ? ? ? X . n A 1 248 G 248 -55 ? ? ? X . n A 1 249 A 249 -54 ? ? ? X . n A 1 250 A 250 -53 ? ? ? X . n A 1 251 A 251 -52 ? ? ? X . n A 1 252 G 252 -51 ? ? ? X . n A 1 253 A 253 -50 ? ? ? X . n A 1 254 C 254 -49 ? ? ? X . n A 1 255 U 255 -48 ? ? ? X . n A 1 256 G 256 -47 ? ? ? X . n A 1 257 C 257 -46 ? ? ? X . n A 1 258 A 258 -45 ? ? ? X . n A 1 259 U 259 -44 ? ? ? X . n A 1 260 U 260 -43 ? ? ? X . n A 1 261 C 261 -42 ? ? ? X . n A 1 262 U 262 -41 ? ? ? X . n A 1 263 U 263 -40 ? ? ? X . n A 1 264 A 264 -39 ? ? ? X . n A 1 265 C 265 -38 ? ? ? X . n A 1 266 C 266 -37 ? ? ? X . n A 1 267 C 267 -36 ? ? ? X . n A 1 268 G 268 -35 ? ? ? X . n A 1 269 G 269 -34 ? ? ? X . n A 1 270 G 270 -33 ? ? ? X . n A 1 271 G 271 -32 ? ? ? X . n A 1 272 A 272 -31 ? ? ? X . n A 1 273 G 273 -30 ? ? ? X . n A 1 274 G 274 -29 ? ? ? X . n A 1 275 U 275 -28 ? ? ? X . n A 1 276 C 276 -27 ? ? ? X . n A 1 277 U 277 -26 ? ? ? X . n A 1 278 G 278 -25 ? ? ? X . n A 1 279 G 279 -24 ? ? ? X . n A 1 280 A 280 -23 ? ? ? X . n A 1 281 A 281 -22 ? ? ? X . n A 1 282 A 282 -21 ? ? ? X . n A 1 283 C 283 -20 ? ? ? X . n A 1 284 A 284 -19 ? ? ? X . n A 1 285 G 285 -18 ? ? ? X . n A 1 286 A 286 -17 ? ? ? X . n A 1 287 A 287 -16 ? ? ? X . n A 1 288 G 288 -15 ? ? ? X . n A 1 289 U 289 -14 ? ? ? X . n A 1 290 C 290 -13 ? ? ? X . n A 1 291 A 291 -12 ? ? ? X . n A 1 292 G 292 -11 ? ? ? X . n A 1 293 C 293 -10 ? ? ? X . n A 1 294 A 294 -9 ? ? ? X . n A 1 295 G 295 -8 ? ? ? X . n A 1 296 A 296 -7 ? ? ? X . n A 1 297 A 297 -6 ? ? ? X . n A 1 298 G 298 -5 ? ? ? X . n A 1 299 U 299 -4 ? ? ? X . n A 1 300 C 300 -3 ? ? ? X . n A 1 301 A 301 -2 ? ? ? X . n A 1 302 U 302 -1 ? ? ? X . n A 1 303 A 303 0 ? ? ? X . n A 1 304 G 304 1 ? ? ? X . n A 1 305 U 305 2 ? ? ? X . n A 1 306 A 306 3 ? ? ? X . n A 1 307 C 307 4 ? ? ? X . n A 1 308 C 308 5 ? ? ? X . n A 1 309 C 309 6 ? ? ? X . n A 1 310 U 310 7 ? ? ? X . n A 1 311 C 311 8 ? ? ? X . n A 1 312 A 312 9 ? ? ? X . n A 1 313 G 313 10 10 G G X . n A 1 314 U 314 11 11 U U X . n A 1 315 A 315 12 12 A A X . n A 1 316 C 316 13 13 C C X . n A 1 317 U 317 14 14 U U X . n A 1 318 C 318 15 15 C C X . n A 1 319 G 319 16 16 G G X . n A 1 320 G 320 17 17 G G X . n A 1 321 G 321 18 18 G G X . n A 1 322 G 322 19 19 G G X . n A 1 323 U 323 20 20 U U X . n A 1 324 G 324 21 21 G G X . n A 1 325 C 325 22 22 C C X . n A 1 326 C 326 23 23 C C X . n A 1 327 C 327 24 24 C C X . n A 1 328 U 328 25 25 U U X . n A 1 329 U 329 26 26 U U X . n A 1 330 C 330 27 27 C C X . n A 1 331 U 331 28 28 U U X . n A 1 332 G 332 29 29 G G X . n A 1 333 C 333 30 30 C C X . n A 1 334 G 334 31 31 G G X . n A 1 335 U 335 32 32 U U X . n A 1 336 G 336 33 33 G G X . n A 1 337 A 337 34 34 A A X . n A 1 338 A 338 35 35 A A X . n A 1 339 G 339 36 36 G G X . n A 1 340 G 340 37 37 G G X . n A 1 341 C 341 38 38 C C X . n A 1 342 U 342 39 39 U U X . n A 1 343 G 343 40 40 G G X . n A 1 344 A 344 41 41 A A X . n A 1 345 G 345 42 42 G G X . n A 1 346 A 346 43 43 A A X . n A 1 347 A 347 44 44 A A X . n A 1 348 A 348 45 45 A A X . n A 1 349 U 349 46 46 U U X . n A 1 350 A 350 47 47 A A X . n A 1 351 C 351 48 48 C C X . n A 1 352 C 352 49 49 C C X . n A 1 353 C 353 50 50 C C X . n A 1 354 G 354 51 51 G G X . n A 1 355 U 355 52 52 U U X . n A 1 356 A 356 53 53 A A X . n A 1 357 U 357 54 54 U U X . n A 1 358 C 358 55 55 C C X . n A 1 359 A 359 56 56 A A X . n A 1 360 C 360 57 57 C C X . n A 1 361 C 361 58 58 C C X . n A 1 362 U 362 59 59 U U X . n A 1 363 G 363 60 60 G G X . n A 1 364 A 364 61 61 A A X . n A 1 365 U 365 62 62 U U X . n A 1 366 C 366 63 63 C C X . n A 1 367 U 367 64 64 U U X . n A 1 368 G 368 65 65 G G X . n A 1 369 G 369 66 66 G G X . n A 1 370 A 370 67 67 A A X . n A 1 371 U 371 68 68 U U X . n A 1 372 A 372 69 69 A A X . n A 1 373 A 373 70 70 A A X . n A 1 374 U 374 71 71 U U X . n A 1 375 G 375 72 72 G G X . n A 1 376 C 376 73 73 C C X . n A 1 377 C 377 74 74 C C X . n A 1 378 A 378 75 75 A A X . n A 1 379 G 379 76 76 G G X . n A 1 380 C 380 77 77 C C X . n A 1 381 G 381 78 78 G G X . n A 1 382 U 382 79 79 U U X . n A 1 383 A 383 80 80 A A X . n A 1 384 G 384 81 81 G G X . n A 1 385 G 385 82 82 G G X . n A 1 386 G 386 83 83 G G X . n A 1 387 A 387 84 84 A A X . n A 1 388 A 388 85 85 A A X . n A 1 389 G 389 86 86 G G X . n A 1 390 U 390 87 87 U U X . n A 1 391 G 391 88 88 G G X . n A 1 392 C 392 89 89 C C X . n A 1 393 U 393 90 ? ? ? X . n A 1 394 G 394 91 ? ? ? X . n A 1 395 A 395 92 ? ? ? X . n A 1 396 G 396 93 ? ? ? X . n A 1 397 G 397 94 ? ? ? X . n A 1 398 G 398 95 ? ? ? X . n A 1 399 G 399 96 ? ? ? X . n A 1 400 A 400 97 ? ? ? X . n A 1 401 A 401 98 ? ? ? X . n A 1 402 G 402 99 ? ? ? X . n A 1 403 G 403 100 ? ? ? X . n A 1 404 A 404 101 ? ? ? X . n A 1 405 C 405 102 ? ? ? X . n A 1 406 G 406 103 ? ? ? X . n A 1 407 G 407 104 ? ? ? X . n A 1 408 A 408 105 ? ? ? X . n A 1 409 A 409 106 ? ? ? X . n A 1 410 C 410 107 ? ? ? X . n A 1 411 A 411 108 ? ? ? X . n A 1 412 A 412 109 ? ? ? X . n A 1 413 G 413 110 ? ? ? X . n A 1 414 U 414 111 ? ? ? X . n A 1 415 A 415 112 ? ? ? X . n A 1 416 U 416 113 ? ? ? X . n A 1 417 G 417 114 ? ? ? X . n A 1 418 G 418 115 ? ? ? X . n A 1 419 C 419 116 ? ? ? X . n A 1 420 G 420 117 ? ? ? X . n A 1 421 U 421 118 ? ? ? X . n A 1 422 U 422 119 ? ? ? X . n A 1 423 C 423 120 ? ? ? X . n A 1 424 G 424 121 ? ? ? X . n A 1 425 C 425 122 ? ? ? X . n A 1 426 G 426 123 ? ? ? X . n A 1 427 C 427 124 ? ? ? X . n A 1 428 C 428 125 ? ? ? X . n A 1 429 U 429 126 ? ? ? X . n A 1 430 A 430 127 ? ? ? X . n A 1 431 A 431 128 ? ? ? X . n A 1 432 G 432 129 ? ? ? X . n A 1 433 C 433 130 ? ? ? X . n A 1 434 U 434 131 ? ? ? X . n A 1 435 U 435 132 ? ? ? X . n A 1 436 G 436 133 ? ? ? X . n A 1 437 A 437 134 ? ? ? X . n A 1 438 A 438 135 ? ? ? X . n A 1 439 C 439 136 ? ? ? X . n A 1 440 C 440 137 ? ? ? X . n A 1 441 A 441 138 ? ? ? X . n A 1 442 C 442 139 ? ? ? X . n A 1 443 C 443 140 ? ? ? X . n A 1 444 G 444 141 ? ? ? X . n A 1 445 U 445 142 ? ? ? X . n A 1 446 A 446 143 ? ? ? X . n A 1 447 U 447 144 ? ? ? X . n A 1 448 A 448 145 ? ? ? X . n A 1 449 C 449 146 ? ? ? X . n A 1 450 C 450 147 ? ? ? X . n A 1 451 G 451 148 ? ? ? X . n A 1 452 A 452 149 ? ? ? X . n A 1 453 A 453 150 ? ? ? X . n A 1 454 C 454 151 ? ? ? X . n A 1 455 G 455 152 ? ? ? X . n A 1 456 G 456 153 ? ? ? X . n A 1 457 U 457 154 ? ? ? X . n A 1 458 A 458 155 ? ? ? X . n A 1 459 C 459 156 ? ? ? X . n A 1 460 G 460 157 ? ? ? X . n A 1 461 U 461 158 ? ? ? X . n A 1 462 A 462 159 ? ? ? X . n A 1 463 C 463 160 ? ? ? X . n A 1 464 G 464 161 ? ? ? X . n A 1 465 G 465 162 ? ? ? X . n A 1 466 U 466 163 ? ? ? X . n A 1 467 G 467 164 ? ? ? X . n A 1 468 G 468 165 ? ? ? X . n A 1 469 U 469 166 ? ? ? X . n A 1 470 G 470 167 ? ? ? X . n A 1 471 U 471 168 ? ? ? X . n A 1 472 G 472 169 ? ? ? X . n A 1 473 A 473 170 ? ? ? X . n A 1 474 G 474 171 ? ? ? X . n A 1 475 A 475 172 ? ? ? X . n A 1 476 G 476 173 ? ? ? X . n A 1 477 G 477 174 ? ? ? X . n A 1 478 A 478 175 ? ? ? X . n A 1 479 G 479 176 ? ? ? X . n A 1 480 U 480 177 ? ? ? X . n A 1 481 U 481 178 ? ? ? X . n A 1 482 C 482 179 ? ? ? X . n A 1 483 G 483 180 ? ? ? X . n A 1 484 C 484 181 ? ? ? X . n A 1 485 U 485 182 ? ? ? X . n A 1 486 C 486 183 ? ? ? X . n A 1 487 U 487 184 ? ? ? X . n A 1 488 A 488 185 ? ? ? X . n A 1 489 C 489 186 ? ? ? X . n A 1 490 U 490 187 ? ? ? X . n A 1 491 C 491 188 ? ? ? X . n A 1 492 U 492 189 ? ? ? X . n A 1 493 A 493 190 ? ? ? X . n A 1 494 U 494 191 ? ? ? X . n A 1 495 U 495 192 ? ? ? X . n A 1 496 A 496 193 ? ? ? X . n A 1 497 G 497 194 ? ? ? X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 201 101 MG MG X . C 2 MG 1 202 102 MG MG X . D 3 TPP 1 203 100 TPP TPP X . E 2 MG 1 204 1 MG MG X . F 2 MG 1 205 2 MG MG X . G 2 MG 1 206 3 MG MG X . H 2 MG 1 207 4 MG MG X . I 4 NA 1 208 1 NA NA X . J 4 NA 1 209 2 NA NA X . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9C6K _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9C6K _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9C6K _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 9C6K _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.008 ? 1941 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.756 ? 3023 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 18.889 ? 963 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.044 ? 400 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.005 ? 82 ? f_plane_restr ? ? # _struct.entry_id 9C6K _struct.title 'Cryo-EM structure of the TPP riboswitch embedded in an RNA scaffold bound to thiamine pyrophosphate' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9C6K _struct_keywords.text 'RNA, Riboswitch, Ligand' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 4 ? J N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9C6K _struct_ref.pdbx_db_accession 9C6K _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9C6K _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 497 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9C6K _struct_ref_seq.db_align_beg -302 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 194 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -302 _struct_ref_seq.pdbx_auth_seq_align_end 194 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A U 328 O4 ? ? ? 1_555 J NA . NA ? ? X U 25 X NA 209 1_555 ? ? ? ? ? ? ? 2.342 ? ? metalc2 metalc ? ? A G 363 O6 ? ? ? 1_555 B MG . MG ? ? X G 60 X MG 201 1_555 ? ? ? ? ? ? ? 1.990 ? ? metalc3 metalc ? ? A G 381 O6 ? ? ? 1_555 B MG . MG ? ? X G 78 X MG 201 1_555 ? ? ? ? ? ? ? 1.919 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 D TPP . O2B ? ? X MG 201 X TPP 203 1_555 ? ? ? ? ? ? ? 1.888 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 D TPP . O1A ? ? X MG 202 X TPP 203 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 D TPP . O1B ? ? X MG 202 X TPP 203 1_555 ? ? ? ? ? ? ? 2.794 ? ? metalc7 metalc ? ? D TPP . O7 ? ? ? 1_555 E MG . MG ? ? X TPP 203 X MG 204 1_555 ? ? ? ? ? ? ? 2.933 ? ? hydrog1 hydrog ? ? A G 313 N1 ? ? ? 1_555 A C 392 N3 ? ? X G 10 X C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 313 N2 ? ? ? 1_555 A C 392 O2 ? ? X G 10 X C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 313 O6 ? ? ? 1_555 A C 392 N4 ? ? X G 10 X C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 314 N3 ? ? ? 1_555 A G 391 O6 ? ? X U 11 X G 88 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A U 314 O2 ? ? ? 1_555 A G 391 N1 ? ? X U 11 X G 88 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A A 315 N1 ? ? ? 1_555 A U 390 N3 ? ? X A 12 X U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 315 N6 ? ? ? 1_555 A U 390 O4 ? ? X A 12 X U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 316 N3 ? ? ? 1_555 A G 389 N1 ? ? X C 13 X G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 316 N4 ? ? ? 1_555 A G 389 O6 ? ? X C 13 X G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 316 O2 ? ? ? 1_555 A G 389 N2 ? ? X C 13 X G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 317 N3 ? ? ? 1_555 A A 388 N1 ? ? X U 14 X A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 317 O4 ? ? ? 1_555 A A 388 N6 ? ? X U 14 X A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 318 N3 ? ? ? 1_555 A G 354 N1 ? ? X C 15 X G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 318 N4 ? ? ? 1_555 A G 354 O6 ? ? X C 15 X G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 318 O2 ? ? ? 1_555 A G 354 N2 ? ? X C 15 X G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 319 N1 ? ? ? 1_555 A C 353 N3 ? ? X G 16 X C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 319 N2 ? ? ? 1_555 A C 353 O2 ? ? X G 16 X C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 319 O6 ? ? ? 1_555 A C 353 N4 ? ? X G 16 X C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 319 N2 ? ? ? 1_555 A A 387 N3 ? ? X G 16 X A 84 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog20 hydrog ? ? A G 320 N1 ? ? ? 1_555 A C 352 N3 ? ? X G 17 X C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 320 N2 ? ? ? 1_555 A C 352 O2 ? ? X G 17 X C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 320 O6 ? ? ? 1_555 A C 352 N4 ? ? X G 17 X C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 320 N2 ? ? ? 1_555 A A 359 N3 ? ? X G 17 X A 56 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog24 hydrog ? ? A G 321 N1 ? ? ? 1_555 A C 351 N3 ? ? X G 18 X C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 321 N2 ? ? ? 1_555 A C 351 O2 ? ? X G 18 X C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 321 O6 ? ? ? 1_555 A C 351 N4 ? ? X G 18 X C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 322 N2 ? ? ? 1_555 A G 345 N3 ? ? X G 19 X G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog28 hydrog ? ? A G 322 N3 ? ? ? 1_555 A G 345 N2 ? ? X G 19 X G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog29 hydrog ? ? A G 322 N1 ? ? ? 1_555 A A 350 N1 ? ? X G 19 X A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog30 hydrog ? ? A G 322 O6 ? ? ? 1_555 A A 350 N6 ? ? X G 19 X A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog31 hydrog ? ? A U 323 N3 ? ? ? 1_555 A A 348 N1 ? ? X U 20 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 323 O4 ? ? ? 1_555 A A 348 N6 ? ? X U 20 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 324 N1 ? ? ? 1_555 A C 341 N3 ? ? X G 21 X C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 324 N2 ? ? ? 1_555 A C 341 O2 ? ? X G 21 X C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 324 O6 ? ? ? 1_555 A C 341 N4 ? ? X G 21 X C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 325 N3 ? ? ? 1_555 A G 340 N1 ? ? X C 22 X G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 325 N4 ? ? ? 1_555 A G 340 O6 ? ? X C 22 X G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 325 O2 ? ? ? 1_555 A G 340 N2 ? ? X C 22 X G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 326 N3 ? ? ? 1_555 A G 339 N1 ? ? X C 23 X G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 326 N4 ? ? ? 1_555 A G 339 O6 ? ? X C 23 X G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 326 O2 ? ? ? 1_555 A G 339 N2 ? ? X C 23 X G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A U 328 N3 ? ? ? 1_555 A A 338 N1 ? ? X U 25 X A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A U 328 O4 ? ? ? 1_555 A A 338 N6 ? ? X U 25 X A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A U 329 N3 ? ? ? 1_555 A A 337 N1 ? ? X U 26 X A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A U 329 O4 ? ? ? 1_555 A A 337 N6 ? ? X U 26 X A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 330 N3 ? ? ? 1_555 A G 336 N1 ? ? X C 27 X G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 330 N4 ? ? ? 1_555 A G 336 O6 ? ? X C 27 X G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 330 O2 ? ? ? 1_555 A G 336 N2 ? ? X C 27 X G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 331 N3 ? ? ? 1_555 A U 335 O4 ? ? X U 28 X U 32 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog50 hydrog ? ? A U 331 O4 ? ? ? 1_555 A U 335 N3 ? ? X U 28 X U 32 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog51 hydrog ? ? A G 340 N2 ? ? ? 1_555 A A 372 N1 ? ? X G 37 X A 69 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog52 hydrog ? ? A U 342 N3 ? ? ? 1_555 A A 346 N7 ? ? X U 39 X A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog53 hydrog ? ? A U 342 O2 ? ? ? 1_555 A A 346 N6 ? ? X U 39 X A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog54 hydrog ? ? A A 356 N6 ? ? ? 1_555 A A 387 N7 ? ? X A 53 X A 84 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog55 hydrog ? ? A A 356 N7 ? ? ? 1_555 A A 387 N6 ? ? X A 53 X A 84 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog56 hydrog ? ? A A 359 N6 ? ? ? 1_555 A G 386 N3 ? ? X A 56 X G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog57 hydrog ? ? A A 359 N7 ? ? ? 1_555 A G 386 N2 ? ? X A 56 X G 83 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog58 hydrog ? ? A C 360 N3 ? ? ? 1_555 A G 385 N1 ? ? X C 57 X G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 360 N4 ? ? ? 1_555 A G 385 O6 ? ? X C 57 X G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 360 O2 ? ? ? 1_555 A G 385 N2 ? ? X C 57 X G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 361 N3 ? ? ? 1_555 A G 384 N1 ? ? X C 58 X G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 361 N4 ? ? ? 1_555 A G 384 O6 ? ? X C 58 X G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 361 O2 ? ? ? 1_555 A G 384 N2 ? ? X C 58 X G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A U 362 N3 ? ? ? 1_555 A A 383 N1 ? ? X U 59 X A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A U 362 O4 ? ? ? 1_555 A A 383 N6 ? ? X U 59 X A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 363 N1 ? ? ? 1_555 A G 381 O6 ? ? X G 60 X G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog67 hydrog ? ? A G 363 N2 ? ? ? 1_555 A G 381 N7 ? ? X G 60 X G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog68 hydrog ? ? A A 364 N6 ? ? ? 1_555 A C 380 O2 ? ? X A 61 X C 77 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog69 hydrog ? ? A C 366 N3 ? ? ? 1_555 A G 379 N1 ? ? X C 63 X G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 366 N4 ? ? ? 1_555 A G 379 O6 ? ? X C 63 X G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 366 O2 ? ? ? 1_555 A G 379 N2 ? ? X C 63 X G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A U 367 N3 ? ? ? 1_555 A A 378 N1 ? ? X U 64 X A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A U 367 O4 ? ? ? 1_555 A A 378 N6 ? ? X U 64 X A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 368 N1 ? ? ? 1_555 A C 377 N3 ? ? X G 65 X C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 368 N2 ? ? ? 1_555 A C 377 O2 ? ? X G 65 X C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 368 O6 ? ? ? 1_555 A C 377 N4 ? ? X G 65 X C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 369 N1 ? ? ? 1_555 A C 376 N3 ? ? X G 66 X C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 369 N2 ? ? ? 1_555 A C 376 O2 ? ? X G 66 X C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 369 O6 ? ? ? 1_555 A C 376 N4 ? ? X G 66 X C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 363 ? X G 60 ? 1_555 MG ? B MG . ? X MG 201 ? 1_555 O6 ? A G 381 ? X G 78 ? 1_555 86.4 ? 2 O6 ? A G 363 ? X G 60 ? 1_555 MG ? B MG . ? X MG 201 ? 1_555 O2B ? D TPP . ? X TPP 203 ? 1_555 148.1 ? 3 O6 ? A G 381 ? X G 78 ? 1_555 MG ? B MG . ? X MG 201 ? 1_555 O2B ? D TPP . ? X TPP 203 ? 1_555 99.2 ? 4 O1A ? D TPP . ? X TPP 203 ? 1_555 MG ? C MG . ? X MG 202 ? 1_555 O1B ? D TPP . ? X TPP 203 ? 1_555 72.5 ? # _pdbx_entry_details.entry_id 9C6K _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9C6K _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9C6K _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.94 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 655558 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 6.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'TPP riboswitch embedded in an RNA scaffold bound with thiamine pyrophosphate' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9C6K _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'SPOT SCAN' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 9C6K _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE-PROPANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9C6K _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 X U -302 ? A U 1 2 1 Y 1 X U -301 ? A U 2 3 1 Y 1 X A -300 ? A A 3 4 1 Y 1 X U -299 ? A U 4 5 1 Y 1 X G -298 ? A G 5 6 1 Y 1 X U -297 ? A U 6 7 1 Y 1 X G -296 ? A G 7 8 1 Y 1 X U -295 ? A U 8 9 1 Y 1 X G -294 ? A G 9 10 1 Y 1 X C -293 ? A C 10 11 1 Y 1 X C -292 ? A C 11 12 1 Y 1 X C -291 ? A C 12 13 1 Y 1 X G -290 ? A G 13 14 1 Y 1 X G -289 ? A G 14 15 1 Y 1 X C -288 ? A C 15 16 1 Y 1 X A -287 ? A A 16 17 1 Y 1 X U -286 ? A U 17 18 1 Y 1 X G -285 ? A G 18 19 1 Y 1 X G -284 ? A G 19 20 1 Y 1 X G -283 ? A G 20 21 1 Y 1 X U -282 ? A U 21 22 1 Y 1 X G -281 ? A G 22 23 1 Y 1 X C -280 ? A C 23 24 1 Y 1 X A -279 ? A A 24 25 1 Y 1 X G -278 ? A G 25 26 1 Y 1 X U -277 ? A U 26 27 1 Y 1 X C -276 ? A C 27 28 1 Y 1 X U -275 ? A U 28 29 1 Y 1 X A -274 ? A A 29 30 1 Y 1 X U -273 ? A U 30 31 1 Y 1 X A -272 ? A A 31 32 1 Y 1 X G -271 ? A G 32 33 1 Y 1 X G -270 ? A G 33 34 1 Y 1 X G -269 ? A G 34 35 1 Y 1 X U -268 ? A U 35 36 1 Y 1 X G -267 ? A G 36 37 1 Y 1 X A -266 ? A A 37 38 1 Y 1 X G -265 ? A G 38 39 1 Y 1 X A -264 ? A A 39 40 1 Y 1 X G -263 ? A G 40 41 1 Y 1 X U -262 ? A U 41 42 1 Y 1 X C -261 ? A C 42 43 1 Y 1 X C -260 ? A C 43 44 1 Y 1 X C -259 ? A C 44 45 1 Y 1 X G -258 ? A G 45 46 1 Y 1 X A -257 ? A A 46 47 1 Y 1 X A -256 ? A A 47 48 1 Y 1 X C -255 ? A C 48 49 1 Y 1 X U -254 ? A U 49 50 1 Y 1 X G -253 ? A G 50 51 1 Y 1 X U -252 ? A U 51 52 1 Y 1 X G -251 ? A G 52 53 1 Y 1 X A -250 ? A A 53 54 1 Y 1 X A -249 ? A A 54 55 1 Y 1 X G -248 ? A G 55 56 1 Y 1 X G -247 ? A G 56 57 1 Y 1 X C -246 ? A C 57 58 1 Y 1 X A -245 ? A A 58 59 1 Y 1 X G -244 ? A G 59 60 1 Y 1 X A -243 ? A A 60 61 1 Y 1 X A -242 ? A A 61 62 1 Y 1 X G -241 ? A G 62 63 1 Y 1 X U -240 ? A U 63 64 1 Y 1 X A -239 ? A A 64 65 1 Y 1 X A -238 ? A A 65 66 1 Y 1 X C -237 ? A C 66 67 1 Y 1 X A -236 ? A A 67 68 1 Y 1 X G -235 ? A G 68 69 1 Y 1 X U -234 ? A U 69 70 1 Y 1 X U -233 ? A U 70 71 1 Y 1 X A -232 ? A A 71 72 1 Y 1 X G -231 ? A G 72 73 1 Y 1 X C -230 ? A C 73 74 1 Y 1 X C -229 ? A C 74 75 1 Y 1 X U -228 ? A U 75 76 1 Y 1 X A -227 ? A A 76 77 1 Y 1 X A -226 ? A A 77 78 1 Y 1 X C -225 ? A C 78 79 1 Y 1 X G -224 ? A G 79 80 1 Y 1 X C -223 ? A C 80 81 1 Y 1 X A -222 ? A A 81 82 1 Y 1 X A -221 ? A A 82 83 1 Y 1 X G -220 ? A G 83 84 1 Y 1 X G -219 ? A G 84 85 1 Y 1 X G -218 ? A G 85 86 1 Y 1 X U -217 ? A U 86 87 1 Y 1 X G -216 ? A G 87 88 1 Y 1 X U -215 ? A U 88 89 1 Y 1 X C -214 ? A C 89 90 1 Y 1 X C -213 ? A C 90 91 1 Y 1 X G -212 ? A G 91 92 1 Y 1 X U -211 ? A U 92 93 1 Y 1 X G -210 ? A G 93 94 1 Y 1 X G -209 ? A G 94 95 1 Y 1 X C -208 ? A C 95 96 1 Y 1 X G -207 ? A G 96 97 1 Y 1 X A -206 ? A A 97 98 1 Y 1 X C -205 ? A C 98 99 1 Y 1 X A -204 ? A A 99 100 1 Y 1 X U -203 ? A U 100 101 1 Y 1 X G -202 ? A G 101 102 1 Y 1 X G -201 ? A G 102 103 1 Y 1 X A -200 ? A A 103 104 1 Y 1 X A -199 ? A A 104 105 1 Y 1 X U -198 ? A U 105 106 1 Y 1 X C -197 ? A C 106 107 1 Y 1 X U -196 ? A U 107 108 1 Y 1 X G -195 ? A G 108 109 1 Y 1 X A -194 ? A A 109 110 1 Y 1 X A -193 ? A A 110 111 1 Y 1 X G -192 ? A G 111 112 1 Y 1 X G -191 ? A G 112 113 1 Y 1 X A -190 ? A A 113 114 1 Y 1 X A -189 ? A A 114 115 1 Y 1 X G -188 ? A G 115 116 1 Y 1 X C -187 ? A C 116 117 1 Y 1 X G -186 ? A G 117 118 1 Y 1 X G -185 ? A G 118 119 1 Y 1 X A -184 ? A A 119 120 1 Y 1 X C -183 ? A C 120 121 1 Y 1 X G -182 ? A G 121 122 1 Y 1 X G -181 ? A G 122 123 1 Y 1 X C -180 ? A C 123 124 1 Y 1 X A -179 ? A A 124 125 1 Y 1 X A -178 ? A A 125 126 1 Y 1 X A -177 ? A A 126 127 1 Y 1 X C -176 ? A C 127 128 1 Y 1 X C -175 ? A C 128 129 1 Y 1 X U -174 ? A U 129 130 1 Y 1 X U -173 ? A U 130 131 1 Y 1 X C -172 ? A C 131 132 1 Y 1 X G -171 ? A G 132 133 1 Y 1 X G -170 ? A G 133 134 1 Y 1 X U -169 ? A U 134 135 1 Y 1 X C -168 ? A C 135 136 1 Y 1 X U -167 ? A U 136 137 1 Y 1 X G -166 ? A G 137 138 1 Y 1 X A -165 ? A A 138 139 1 Y 1 X G -164 ? A G 139 140 1 Y 1 X G -163 ? A G 140 141 1 Y 1 X A -162 ? A A 141 142 1 Y 1 X A -161 ? A A 142 143 1 Y 1 X C -160 ? A C 143 144 1 Y 1 X A -159 ? A A 144 145 1 Y 1 X C -158 ? A C 145 146 1 Y 1 X G -157 ? A G 146 147 1 Y 1 X A -156 ? A A 147 148 1 Y 1 X A -155 ? A A 148 149 1 Y 1 X C -154 ? A C 149 150 1 Y 1 X U -153 ? A U 150 151 1 Y 1 X U -152 ? A U 151 152 1 Y 1 X C -151 ? A C 152 153 1 Y 1 X A -150 ? A A 153 154 1 Y 1 X U -149 ? A U 154 155 1 Y 1 X A -148 ? A A 155 156 1 Y 1 X U -147 ? A U 156 157 1 Y 1 X G -146 ? A G 157 158 1 Y 1 X A -145 ? A A 158 159 1 Y 1 X G -144 ? A G 159 160 1 Y 1 X G -143 ? A G 160 161 1 Y 1 X C -142 ? A C 161 162 1 Y 1 X U -141 ? A U 162 163 1 Y 1 X A -140 ? A A 163 164 1 Y 1 X G -139 ? A G 164 165 1 Y 1 X G -138 ? A G 165 166 1 Y 1 X U -137 ? A U 166 167 1 Y 1 X A -136 ? A A 167 168 1 Y 1 X U -135 ? A U 168 169 1 Y 1 X C -134 ? A C 169 170 1 Y 1 X A -133 ? A A 170 171 1 Y 1 X A -132 ? A A 171 172 1 Y 1 X U -131 ? A U 172 173 1 Y 1 X G -130 ? A G 173 174 1 Y 1 X G -129 ? A G 174 175 1 Y 1 X A -128 ? A A 175 176 1 Y 1 X U -127 ? A U 176 177 1 Y 1 X G -126 ? A G 177 178 1 Y 1 X A -125 ? A A 178 179 1 Y 1 X G -124 ? A G 179 180 1 Y 1 X U -123 ? A U 180 181 1 Y 1 X U -122 ? A U 181 182 1 Y 1 X U -121 ? A U 182 183 1 Y 1 X G -120 ? A G 183 184 1 Y 1 X C -119 ? A C 184 185 1 Y 1 X A -118 ? A A 185 186 1 Y 1 X U -117 ? A U 186 187 1 Y 1 X A -116 ? A A 187 188 1 Y 1 X A -115 ? A A 188 189 1 Y 1 X C -114 ? A C 189 190 1 Y 1 X A -113 ? A A 190 191 1 Y 1 X A -112 ? A A 191 192 1 Y 1 X A -111 ? A A 192 193 1 Y 1 X A -110 ? A A 193 194 1 Y 1 X C -109 ? A C 194 195 1 Y 1 X A -108 ? A A 195 196 1 Y 1 X A -107 ? A A 196 197 1 Y 1 X A -106 ? A A 197 198 1 Y 1 X G -105 ? A G 198 199 1 Y 1 X U -104 ? A U 199 200 1 Y 1 X C -103 ? A C 200 201 1 Y 1 X C -102 ? A C 201 202 1 Y 1 X U -101 ? A U 202 203 1 Y 1 X U -100 ? A U 203 204 1 Y 1 X U -99 ? A U 204 205 1 Y 1 X C -98 ? A C 205 206 1 Y 1 X U -97 ? A U 206 207 1 Y 1 X G -96 ? A G 207 208 1 Y 1 X C -95 ? A C 208 209 1 Y 1 X C -94 ? A C 209 210 1 Y 1 X A -93 ? A A 210 211 1 Y 1 X A -92 ? A A 211 212 1 Y 1 X A -91 ? A A 212 213 1 Y 1 X G -90 ? A G 213 214 1 Y 1 X U -89 ? A U 214 215 1 Y 1 X U -88 ? A U 215 216 1 Y 1 X G -87 ? A G 216 217 1 Y 1 X G -86 ? A G 217 218 1 Y 1 X U -85 ? A U 218 219 1 Y 1 X A -84 ? A A 219 220 1 Y 1 X C -83 ? A C 220 221 1 Y 1 X A -82 ? A A 221 222 1 Y 1 X G -81 ? A G 222 223 1 Y 1 X A -80 ? A A 223 224 1 Y 1 X G -79 ? A G 224 225 1 Y 1 X U -78 ? A U 225 226 1 Y 1 X A -77 ? A A 226 227 1 Y 1 X A -76 ? A A 227 228 1 Y 1 X A -75 ? A A 228 229 1 Y 1 X U -74 ? A U 229 230 1 Y 1 X G -73 ? A G 230 231 1 Y 1 X A -72 ? A A 231 232 1 Y 1 X A -71 ? A A 232 233 1 Y 1 X G -70 ? A G 233 234 1 Y 1 X C -69 ? A C 234 235 1 Y 1 X A -68 ? A A 235 236 1 Y 1 X G -67 ? A G 236 237 1 Y 1 X A -66 ? A A 237 238 1 Y 1 X U -65 ? A U 238 239 1 Y 1 X U -64 ? A U 239 240 1 Y 1 X G -63 ? A G 240 241 1 Y 1 X A -62 ? A A 241 242 1 Y 1 X U -61 ? A U 242 243 1 Y 1 X G -60 ? A G 243 244 1 Y 1 X A -59 ? A A 244 245 1 Y 1 X A -58 ? A A 245 246 1 Y 1 X G -57 ? A G 246 247 1 Y 1 X G -56 ? A G 247 248 1 Y 1 X G -55 ? A G 248 249 1 Y 1 X A -54 ? A A 249 250 1 Y 1 X A -53 ? A A 250 251 1 Y 1 X A -52 ? A A 251 252 1 Y 1 X G -51 ? A G 252 253 1 Y 1 X A -50 ? A A 253 254 1 Y 1 X C -49 ? A C 254 255 1 Y 1 X U -48 ? A U 255 256 1 Y 1 X G -47 ? A G 256 257 1 Y 1 X C -46 ? A C 257 258 1 Y 1 X A -45 ? A A 258 259 1 Y 1 X U -44 ? A U 259 260 1 Y 1 X U -43 ? A U 260 261 1 Y 1 X C -42 ? A C 261 262 1 Y 1 X U -41 ? A U 262 263 1 Y 1 X U -40 ? A U 263 264 1 Y 1 X A -39 ? A A 264 265 1 Y 1 X C -38 ? A C 265 266 1 Y 1 X C -37 ? A C 266 267 1 Y 1 X C -36 ? A C 267 268 1 Y 1 X G -35 ? A G 268 269 1 Y 1 X G -34 ? A G 269 270 1 Y 1 X G -33 ? A G 270 271 1 Y 1 X G -32 ? A G 271 272 1 Y 1 X A -31 ? A A 272 273 1 Y 1 X G -30 ? A G 273 274 1 Y 1 X G -29 ? A G 274 275 1 Y 1 X U -28 ? A U 275 276 1 Y 1 X C -27 ? A C 276 277 1 Y 1 X U -26 ? A U 277 278 1 Y 1 X G -25 ? A G 278 279 1 Y 1 X G -24 ? A G 279 280 1 Y 1 X A -23 ? A A 280 281 1 Y 1 X A -22 ? A A 281 282 1 Y 1 X A -21 ? A A 282 283 1 Y 1 X C -20 ? A C 283 284 1 Y 1 X A -19 ? A A 284 285 1 Y 1 X G -18 ? A G 285 286 1 Y 1 X A -17 ? A A 286 287 1 Y 1 X A -16 ? A A 287 288 1 Y 1 X G -15 ? A G 288 289 1 Y 1 X U -14 ? A U 289 290 1 Y 1 X C -13 ? A C 290 291 1 Y 1 X A -12 ? A A 291 292 1 Y 1 X G -11 ? A G 292 293 1 Y 1 X C -10 ? A C 293 294 1 Y 1 X A -9 ? A A 294 295 1 Y 1 X G -8 ? A G 295 296 1 Y 1 X A -7 ? A A 296 297 1 Y 1 X A -6 ? A A 297 298 1 Y 1 X G -5 ? A G 298 299 1 Y 1 X U -4 ? A U 299 300 1 Y 1 X C -3 ? A C 300 301 1 Y 1 X A -2 ? A A 301 302 1 Y 1 X U -1 ? A U 302 303 1 Y 1 X A 0 ? A A 303 304 1 Y 1 X G 1 ? A G 304 305 1 Y 1 X U 2 ? A U 305 306 1 Y 1 X A 3 ? A A 306 307 1 Y 1 X C 4 ? A C 307 308 1 Y 1 X C 5 ? A C 308 309 1 Y 1 X C 6 ? A C 309 310 1 Y 1 X U 7 ? A U 310 311 1 Y 1 X C 8 ? A C 311 312 1 Y 1 X A 9 ? A A 312 313 1 Y 1 X U 90 ? A U 393 314 1 Y 1 X G 91 ? A G 394 315 1 Y 1 X A 92 ? A A 395 316 1 Y 1 X G 93 ? A G 396 317 1 Y 1 X G 94 ? A G 397 318 1 Y 1 X G 95 ? A G 398 319 1 Y 1 X G 96 ? A G 399 320 1 Y 1 X A 97 ? A A 400 321 1 Y 1 X A 98 ? A A 401 322 1 Y 1 X G 99 ? A G 402 323 1 Y 1 X G 100 ? A G 403 324 1 Y 1 X A 101 ? A A 404 325 1 Y 1 X C 102 ? A C 405 326 1 Y 1 X G 103 ? A G 406 327 1 Y 1 X G 104 ? A G 407 328 1 Y 1 X A 105 ? A A 408 329 1 Y 1 X A 106 ? A A 409 330 1 Y 1 X C 107 ? A C 410 331 1 Y 1 X A 108 ? A A 411 332 1 Y 1 X A 109 ? A A 412 333 1 Y 1 X G 110 ? A G 413 334 1 Y 1 X U 111 ? A U 414 335 1 Y 1 X A 112 ? A A 415 336 1 Y 1 X U 113 ? A U 416 337 1 Y 1 X G 114 ? A G 417 338 1 Y 1 X G 115 ? A G 418 339 1 Y 1 X C 116 ? A C 419 340 1 Y 1 X G 117 ? A G 420 341 1 Y 1 X U 118 ? A U 421 342 1 Y 1 X U 119 ? A U 422 343 1 Y 1 X C 120 ? A C 423 344 1 Y 1 X G 121 ? A G 424 345 1 Y 1 X C 122 ? A C 425 346 1 Y 1 X G 123 ? A G 426 347 1 Y 1 X C 124 ? A C 427 348 1 Y 1 X C 125 ? A C 428 349 1 Y 1 X U 126 ? A U 429 350 1 Y 1 X A 127 ? A A 430 351 1 Y 1 X A 128 ? A A 431 352 1 Y 1 X G 129 ? A G 432 353 1 Y 1 X C 130 ? A C 433 354 1 Y 1 X U 131 ? A U 434 355 1 Y 1 X U 132 ? A U 435 356 1 Y 1 X G 133 ? A G 436 357 1 Y 1 X A 134 ? A A 437 358 1 Y 1 X A 135 ? A A 438 359 1 Y 1 X C 136 ? A C 439 360 1 Y 1 X C 137 ? A C 440 361 1 Y 1 X A 138 ? A A 441 362 1 Y 1 X C 139 ? A C 442 363 1 Y 1 X C 140 ? A C 443 364 1 Y 1 X G 141 ? A G 444 365 1 Y 1 X U 142 ? A U 445 366 1 Y 1 X A 143 ? A A 446 367 1 Y 1 X U 144 ? A U 447 368 1 Y 1 X A 145 ? A A 448 369 1 Y 1 X C 146 ? A C 449 370 1 Y 1 X C 147 ? A C 450 371 1 Y 1 X G 148 ? A G 451 372 1 Y 1 X A 149 ? A A 452 373 1 Y 1 X A 150 ? A A 453 374 1 Y 1 X C 151 ? A C 454 375 1 Y 1 X G 152 ? A G 455 376 1 Y 1 X G 153 ? A G 456 377 1 Y 1 X U 154 ? A U 457 378 1 Y 1 X A 155 ? A A 458 379 1 Y 1 X C 156 ? A C 459 380 1 Y 1 X G 157 ? A G 460 381 1 Y 1 X U 158 ? A U 461 382 1 Y 1 X A 159 ? A A 462 383 1 Y 1 X C 160 ? A C 463 384 1 Y 1 X G 161 ? A G 464 385 1 Y 1 X G 162 ? A G 465 386 1 Y 1 X U 163 ? A U 466 387 1 Y 1 X G 164 ? A G 467 388 1 Y 1 X G 165 ? A G 468 389 1 Y 1 X U 166 ? A U 469 390 1 Y 1 X G 167 ? A G 470 391 1 Y 1 X U 168 ? A U 471 392 1 Y 1 X G 169 ? A G 472 393 1 Y 1 X A 170 ? A A 473 394 1 Y 1 X G 171 ? A G 474 395 1 Y 1 X A 172 ? A A 475 396 1 Y 1 X G 173 ? A G 476 397 1 Y 1 X G 174 ? A G 477 398 1 Y 1 X A 175 ? A A 478 399 1 Y 1 X G 176 ? A G 479 400 1 Y 1 X U 177 ? A U 480 401 1 Y 1 X U 178 ? A U 481 402 1 Y 1 X C 179 ? A C 482 403 1 Y 1 X G 180 ? A G 483 404 1 Y 1 X C 181 ? A C 484 405 1 Y 1 X U 182 ? A U 485 406 1 Y 1 X C 183 ? A C 486 407 1 Y 1 X U 184 ? A U 487 408 1 Y 1 X A 185 ? A A 488 409 1 Y 1 X C 186 ? A C 489 410 1 Y 1 X U 187 ? A U 490 411 1 Y 1 X C 188 ? A C 491 412 1 Y 1 X U 189 ? A U 492 413 1 Y 1 X A 190 ? A A 493 414 1 Y 1 X U 191 ? A U 494 415 1 Y 1 X U 192 ? A U 495 416 1 Y 1 X A 193 ? A A 496 417 1 Y 1 X G 194 ? A G 497 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 MG MG MG N N 111 NA NA NA N N 112 TPP "N1'" N Y N 113 TPP "C2'" C Y N 114 TPP CM2 C N N 115 TPP "N3'" N Y N 116 TPP "C4'" C Y N 117 TPP "N4'" N N N 118 TPP "C5'" C Y N 119 TPP "C6'" C Y N 120 TPP "C7'" C N N 121 TPP N3 N Y N 122 TPP C2 C Y N 123 TPP S1 S Y N 124 TPP C5 C Y N 125 TPP C4 C Y N 126 TPP CM4 C N N 127 TPP C6 C N N 128 TPP C7 C N N 129 TPP O7 O N N 130 TPP PA P N S 131 TPP O1A O N N 132 TPP O2A O N N 133 TPP O3A O N N 134 TPP PB P N N 135 TPP O1B O N N 136 TPP O2B O N N 137 TPP O3B O N N 138 TPP HM21 H N N 139 TPP HM22 H N N 140 TPP HM23 H N N 141 TPP HN41 H N N 142 TPP HN42 H N N 143 TPP "H6'" H N N 144 TPP "H7'1" H N N 145 TPP "H7'2" H N N 146 TPP H2 H N N 147 TPP HM41 H N N 148 TPP HM42 H N N 149 TPP HM43 H N N 150 TPP H61 H N N 151 TPP H62 H N N 152 TPP H71 H N N 153 TPP H72 H N N 154 TPP HOA2 H N N 155 TPP HOB2 H N N 156 TPP HOB3 H N N 157 U OP3 O N N 158 U P P N N 159 U OP1 O N N 160 U OP2 O N N 161 U "O5'" O N N 162 U "C5'" C N N 163 U "C4'" C N R 164 U "O4'" O N N 165 U "C3'" C N S 166 U "O3'" O N N 167 U "C2'" C N R 168 U "O2'" O N N 169 U "C1'" C N R 170 U N1 N N N 171 U C2 C N N 172 U O2 O N N 173 U N3 N N N 174 U C4 C N N 175 U O4 O N N 176 U C5 C N N 177 U C6 C N N 178 U HOP3 H N N 179 U HOP2 H N N 180 U "H5'" H N N 181 U "H5''" H N N 182 U "H4'" H N N 183 U "H3'" H N N 184 U "HO3'" H N N 185 U "H2'" H N N 186 U "HO2'" H N N 187 U "H1'" H N N 188 U H3 H N N 189 U H5 H N N 190 U H6 H N N 191 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 TPP "N1'" "C2'" doub Y N 116 TPP "N1'" "C6'" sing Y N 117 TPP "C2'" CM2 sing N N 118 TPP "C2'" "N3'" sing Y N 119 TPP CM2 HM21 sing N N 120 TPP CM2 HM22 sing N N 121 TPP CM2 HM23 sing N N 122 TPP "N3'" "C4'" doub Y N 123 TPP "C4'" "N4'" sing N N 124 TPP "C4'" "C5'" sing Y N 125 TPP "N4'" HN41 sing N N 126 TPP "N4'" HN42 sing N N 127 TPP "C5'" "C6'" doub Y N 128 TPP "C5'" "C7'" sing N N 129 TPP "C6'" "H6'" sing N N 130 TPP "C7'" N3 sing N N 131 TPP "C7'" "H7'1" sing N N 132 TPP "C7'" "H7'2" sing N N 133 TPP N3 C2 doub Y N 134 TPP N3 C4 sing Y N 135 TPP C2 S1 sing Y N 136 TPP C2 H2 sing N N 137 TPP S1 C5 sing Y N 138 TPP C5 C4 doub Y N 139 TPP C5 C6 sing N N 140 TPP C4 CM4 sing N N 141 TPP CM4 HM41 sing N N 142 TPP CM4 HM42 sing N N 143 TPP CM4 HM43 sing N N 144 TPP C6 C7 sing N N 145 TPP C6 H61 sing N N 146 TPP C6 H62 sing N N 147 TPP C7 O7 sing N N 148 TPP C7 H71 sing N N 149 TPP C7 H72 sing N N 150 TPP O7 PA sing N N 151 TPP PA O1A doub N N 152 TPP PA O2A sing N N 153 TPP PA O3A sing N N 154 TPP O2A HOA2 sing N N 155 TPP O3A PB sing N N 156 TPP PB O1B doub N N 157 TPP PB O2B sing N N 158 TPP PB O3B sing N N 159 TPP O2B HOB2 sing N N 160 TPP O3B HOB3 sing N N 161 U OP3 P sing N N 162 U OP3 HOP3 sing N N 163 U P OP1 doub N N 164 U P OP2 sing N N 165 U P "O5'" sing N N 166 U OP2 HOP2 sing N N 167 U "O5'" "C5'" sing N N 168 U "C5'" "C4'" sing N N 169 U "C5'" "H5'" sing N N 170 U "C5'" "H5''" sing N N 171 U "C4'" "O4'" sing N N 172 U "C4'" "C3'" sing N N 173 U "C4'" "H4'" sing N N 174 U "O4'" "C1'" sing N N 175 U "C3'" "O3'" sing N N 176 U "C3'" "C2'" sing N N 177 U "C3'" "H3'" sing N N 178 U "O3'" "HO3'" sing N N 179 U "C2'" "O2'" sing N N 180 U "C2'" "C1'" sing N N 181 U "C2'" "H2'" sing N N 182 U "O2'" "HO2'" sing N N 183 U "C1'" N1 sing N N 184 U "C1'" "H1'" sing N N 185 U N1 C2 sing N N 186 U N1 C6 sing N N 187 U C2 O2 doub N N 188 U C2 N3 sing N N 189 U N3 C4 sing N N 190 U N3 H3 sing N N 191 U C4 O4 doub N N 192 U C4 C5 sing N N 193 U C5 C6 doub N N 194 U C5 H5 sing N N 195 U C6 H6 sing N N 196 # _em_admin.current_status REL _em_admin.deposition_date 2024-06-07 _em_admin.deposition_site RCSB _em_admin.entry_id 9C6K _em_admin.last_update 2024-12-04 _em_admin.map_release_date 2024-12-04 _em_admin.title 'Cryo-EM structure of the TPP riboswitch embedded in an RNA scaffold bound to thiamine pyrophosphate' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value .027 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 562 _em_entity_assembly_naturalsource.organism 'Escherichia coli' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9C6K 'double helix' 9C6K 'a-form double helix' 9C6K 'hairpin loop' 9C6K 'bulge loop' 9C6K 'mismatched base pair' 9C6K 'internal loop' 9C6K 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 313 1_555 A C 392 1_555 -0.138 -0.369 -1.058 -1.932 5.434 -4.488 1 X_G10:C89_X X 10 ? X 89 ? 19 1 1 A U 314 1_555 A G 391 1_555 1.695 -0.436 -0.147 0.535 1.379 0.096 2 X_U11:G88_X X 11 ? X 88 ? 28 1 1 A A 315 1_555 A U 390 1_555 0.087 -0.265 0.762 2.511 -8.727 -10.147 3 X_A12:U87_X X 12 ? X 87 ? 20 1 1 A C 316 1_555 A G 389 1_555 0.214 -0.328 0.786 2.086 -8.517 -5.165 4 X_C13:G86_X X 13 ? X 86 ? 19 1 1 A U 317 1_555 A A 388 1_555 -0.025 -0.231 0.568 -3.076 -4.830 5.754 5 X_U14:A85_X X 14 ? X 85 ? 20 1 1 A C 318 1_555 A G 354 1_555 0.148 -0.233 0.688 2.513 -3.452 0.655 6 X_C15:G51_X X 15 ? X 51 ? 19 1 1 A G 319 1_555 A C 353 1_555 -0.263 -0.104 -0.188 -2.589 -10.418 4.247 7 X_G16:C50_X X 16 ? X 50 ? 19 1 1 A G 320 1_555 A C 352 1_555 -0.207 -0.124 -0.272 -11.555 -7.250 -0.283 8 X_G17:C49_X X 17 ? X 49 ? 19 1 1 A G 321 1_555 A C 351 1_555 -0.219 -0.174 -0.471 -5.160 -4.038 1.286 9 X_G18:C48_X X 18 ? X 48 ? 19 1 1 A G 322 1_555 A A 350 1_555 -0.055 1.358 -0.607 0.644 -0.200 -26.455 10 X_G19:A47_X X 19 ? X 47 ? 8 1 1 A U 323 1_555 A A 348 1_555 0.159 -0.138 0.285 8.499 5.853 5.382 11 X_U20:A45_X X 20 ? X 45 ? 20 1 1 A U 335 1_555 A U 331 1_555 2.048 0.450 -1.672 -15.448 -48.660 166.598 12 X_U32:U28_X X 32 ? X 28 ? 12 2 1 A G 336 1_555 A C 330 1_555 -0.208 -0.227 -0.358 0.000 1.543 -2.419 13 X_G33:C27_X X 33 ? X 27 ? 19 1 1 A A 337 1_555 A U 329 1_555 0.067 -0.404 -1.216 2.940 1.801 0.395 14 X_A34:U26_X X 34 ? X 26 ? 20 1 1 A A 338 1_555 A U 328 1_555 -0.086 -0.097 0.461 -7.571 7.595 12.225 15 X_A35:U25_X X 35 ? X 25 ? 20 1 1 A G 339 1_555 A C 326 1_555 -0.114 -0.130 -0.267 -15.190 10.843 1.834 16 X_G36:C23_X X 36 ? X 23 ? 19 1 1 A G 340 1_555 A C 325 1_555 -0.201 -0.174 0.415 -6.292 4.375 2.346 17 X_G37:C22_X X 37 ? X 22 ? 19 1 1 A C 341 1_555 A G 324 1_555 0.227 -0.278 0.657 -7.592 10.287 -1.296 18 X_C38:G21_X X 38 ? X 21 ? 19 1 1 A U 342 1_555 A A 346 1_555 3.851 -1.604 0.342 4.246 11.668 -102.762 19 X_U39:A43_X X 39 ? X 43 ? 24 4 1 A A 356 1_555 A A 387 1_555 -4.659 5.170 -0.125 19.037 -6.439 -173.272 20 X_A53:A84_X X 53 ? X 84 ? 2 7 1 A A 359 1_555 A G 386 1_555 -6.614 -4.079 -0.477 4.941 -5.256 -8.760 21 X_A56:G83_X X 56 ? X 83 ? 11 10 1 A C 360 1_555 A G 385 1_555 0.210 -0.286 0.439 4.172 -5.005 -0.137 22 X_C57:G82_X X 57 ? X 82 ? 19 1 1 A C 361 1_555 A G 384 1_555 0.221 -0.268 0.259 -1.032 -11.415 -1.407 23 X_C58:G81_X X 58 ? X 81 ? 19 1 1 A U 362 1_555 A A 383 1_555 -0.101 -0.068 0.060 -5.230 -6.164 -3.849 24 X_U59:A80_X X 59 ? X 80 ? 20 1 1 A G 363 1_555 A G 381 1_555 0.990 3.047 -0.456 -20.774 4.453 -95.220 25 X_G60:G78_X X 60 ? X 78 ? 6 3 1 A A 364 1_555 A C 380 1_555 -1.930 1.836 1.965 10.126 1.683 99.726 26 X_A61:C77_X X 61 ? X 77 ? ? ? 1 A C 366 1_555 A G 379 1_555 0.137 -0.177 -0.595 3.961 -1.533 1.773 27 X_C63:G76_X X 63 ? X 76 ? 19 1 1 A U 367 1_555 A A 378 1_555 -0.137 -0.115 -0.561 3.334 4.624 -0.562 28 X_U64:A75_X X 64 ? X 75 ? 20 1 1 A G 368 1_555 A C 377 1_555 -0.181 -0.092 -0.378 -8.058 0.736 0.851 29 X_G65:C74_X X 65 ? X 74 ? 19 1 1 A G 369 1_555 A C 376 1_555 -0.202 -0.174 -0.337 3.204 1.514 1.273 30 X_G66:C73_X X 66 ? X 73 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 313 1_555 A C 392 1_555 A U 314 1_555 A G 391 1_555 0.482 -1.433 3.570 -1.995 -0.543 41.279 -1.967 -0.916 3.561 -0.769 2.828 41.329 1 XX_G10U11:G88C89_XX X 10 ? X 89 ? X 11 ? X 88 ? 1 A U 314 1_555 A G 391 1_555 A A 315 1_555 A U 390 1_555 -0.774 -1.996 2.447 -2.155 29.594 36.329 -3.906 0.878 0.739 40.248 2.931 46.587 2 XX_U11A12:U87G88_XX X 11 ? X 88 ? X 12 ? X 87 ? 1 A A 315 1_555 A U 390 1_555 A C 316 1_555 A G 389 1_555 -0.662 -1.583 2.963 -2.666 0.137 36.277 -2.553 0.721 2.996 0.219 4.274 36.372 3 XX_A12C13:G86U87_XX X 12 ? X 87 ? X 13 ? X 86 ? 1 A C 316 1_555 A G 389 1_555 A U 317 1_555 A A 388 1_555 0.238 -1.058 3.120 2.745 1.001 34.902 -1.901 -0.003 3.098 1.665 -4.566 35.020 4 XX_C13U14:A85G86_XX X 13 ? X 86 ? X 14 ? X 85 ? 1 A U 317 1_555 A A 388 1_555 A C 318 1_555 A G 354 1_555 0.737 -1.091 3.027 -3.871 5.397 39.264 -2.162 -1.483 2.777 7.962 5.711 39.799 5 XX_U14C15:G51A85_XX X 14 ? X 85 ? X 15 ? X 51 ? 1 A C 318 1_555 A G 354 1_555 A G 319 1_555 A C 353 1_555 0.477 -1.950 3.167 3.835 5.752 26.524 -5.423 -0.137 2.732 12.274 -8.183 27.394 6 XX_C15G16:C50G51_XX X 15 ? X 51 ? X 16 ? X 50 ? 1 A G 319 1_555 A C 353 1_555 A G 320 1_555 A C 352 1_555 -0.871 -1.542 3.464 -4.173 2.482 32.847 -3.140 0.785 3.423 4.360 7.330 33.194 7 XX_G16G17:C49C50_XX X 16 ? X 50 ? X 17 ? X 49 ? 1 A G 320 1_555 A C 352 1_555 A G 321 1_555 A C 351 1_555 -0.161 -1.321 3.129 1.374 8.025 33.430 -3.375 0.468 2.739 13.700 -2.345 34.380 8 XX_G17G18:C48C49_XX X 17 ? X 49 ? X 18 ? X 48 ? 1 A G 321 1_555 A C 351 1_555 A G 322 1_555 A A 350 1_555 -1.446 -0.947 3.113 2.923 2.586 34.138 -1.976 2.871 2.906 4.387 -4.959 34.354 9 XX_G18G19:A47C48_XX X 18 ? X 48 ? X 19 ? X 47 ? 1 A G 322 1_555 A A 350 1_555 A U 323 1_555 A A 348 1_555 0.629 0.485 3.365 -1.342 9.853 9.996 -8.052 -3.929 2.668 44.546 6.070 14.090 10 XX_G19U20:A45A47_XX X 19 ? X 47 ? X 20 ? X 45 ? 1 A U 335 1_555 A U 331 1_555 A G 336 1_555 A C 330 1_555 0.429 2.137 2.858 -23.195 -3.472 111.924 1.311 -0.482 2.730 -2.082 13.908 113.532 11 XX_U32G33:C27U28_XX X 32 ? X 28 ? X 33 ? X 27 ? 1 A G 336 1_555 A C 330 1_555 A A 337 1_555 A U 329 1_555 0.601 -1.168 3.483 1.614 0.944 29.912 -2.465 -0.809 3.473 1.827 -3.122 29.969 12 XX_G33A34:U26C27_XX X 33 ? X 27 ? X 34 ? X 26 ? 1 A A 337 1_555 A U 329 1_555 A A 338 1_555 A U 328 1_555 0.717 -2.254 3.127 -14.980 11.945 33.040 -4.679 -2.632 1.765 19.134 23.997 38.059 13 XX_A34A35:U25U26_XX X 34 ? X 26 ? X 35 ? X 25 ? 1 A A 338 1_555 A U 328 1_555 A G 339 1_555 A C 326 1_555 1.458 -1.961 3.387 9.213 8.007 51.154 -2.759 -1.025 3.266 9.125 -10.499 52.495 14 XX_A35G36:C23U25_XX X 35 ? X 25 ? X 36 ? X 23 ? 1 A G 339 1_555 A C 326 1_555 A G 340 1_555 A C 325 1_555 0.086 -1.868 2.929 -6.595 8.611 29.739 -4.731 -1.156 2.245 16.117 12.345 31.614 15 XX_G36G37:C22C23_XX X 36 ? X 23 ? X 37 ? X 22 ? 1 A G 340 1_555 A C 325 1_555 A C 341 1_555 A G 324 1_555 -0.574 -2.079 3.173 -0.324 8.669 37.813 -4.090 0.829 2.655 13.166 0.493 38.760 16 XX_G37C38:G21C22_XX X 37 ? X 22 ? X 38 ? X 21 ? 1 A C 341 1_555 A G 324 1_555 A U 342 1_555 A A 346 1_555 -3.492 -1.056 2.997 14.072 3.940 65.413 -1.084 3.618 2.231 3.599 -12.855 66.848 17 XX_C38U39:A43G21_XX X 38 ? X 21 ? X 39 ? X 43 ? 1 A A 356 1_555 A A 387 1_555 A A 359 1_555 A G 386 1_555 2.090 -2.508 0.806 95.751 132.585 129.942 -1.363 -0.970 0.392 66.912 -48.322 173.058 18 XX_A53A56:G83A84_XX X 53 ? X 84 ? X 56 ? X 83 ? 1 A A 359 1_555 A G 386 1_555 A C 360 1_555 A G 385 1_555 0.914 -0.959 3.500 -6.423 2.475 64.640 -1.002 -1.133 3.371 2.307 5.989 64.966 19 XX_A56C57:G82G83_XX X 56 ? X 83 ? X 57 ? X 82 ? 1 A C 360 1_555 A G 385 1_555 A C 361 1_555 A G 384 1_555 -1.402 -2.181 2.994 -1.191 9.401 26.473 -6.291 2.661 2.166 19.741 2.502 28.090 20 XX_C57C58:G81G82_XX X 57 ? X 82 ? X 58 ? X 81 ? 1 A C 361 1_555 A G 384 1_555 A U 362 1_555 A A 383 1_555 0.056 -1.638 3.233 0.129 3.670 37.817 -2.967 -0.070 3.067 5.646 -0.199 37.988 21 XX_C58U59:A80G81_XX X 58 ? X 81 ? X 59 ? X 80 ? 1 A U 362 1_555 A A 383 1_555 A G 363 1_555 A G 381 1_555 2.460 -1.942 2.996 16.935 8.048 92.813 -1.464 -1.385 3.174 5.512 -11.599 94.262 22 XX_U59G60:G78A80_XX X 59 ? X 80 ? X 60 ? X 78 ? 1 A G 363 1_555 A G 381 1_555 A A 364 1_555 A C 380 1_555 -2.925 -1.171 1.755 -32.271 168.921 77.335 -1.149 1.357 0.629 85.937 16.417 173.737 23 XX_G60A61:C77G78_XX X 60 ? X 78 ? X 61 ? X 77 ? 1 A A 364 1_555 A C 380 1_555 A C 366 1_555 A G 379 1_555 -3.202 -1.297 -1.039 103.888 -125.053 -15.852 0.607 -1.660 0.893 68.297 56.738 -162.744 24 XX_A61C63:G76C77_XX X 61 ? X 77 ? X 63 ? X 76 ? 1 A C 366 1_555 A G 379 1_555 A U 367 1_555 A A 378 1_555 -0.333 -1.584 3.289 -1.500 6.867 34.054 -3.660 0.337 2.935 11.573 2.527 34.751 25 XX_C63U64:A75G76_XX X 63 ? X 76 ? X 64 ? X 75 ? 1 A U 367 1_555 A A 378 1_555 A G 368 1_555 A C 377 1_555 0.016 -1.510 3.349 0.742 21.447 32.294 -4.659 0.058 2.001 34.249 -1.186 38.616 26 XX_U64G65:C74A75_XX X 64 ? X 75 ? X 65 ? X 74 ? 1 A G 368 1_555 A C 377 1_555 A G 369 1_555 A C 376 1_555 0.128 -1.902 2.842 -0.346 3.627 32.559 -3.896 -0.276 2.619 6.444 0.615 32.757 27 XX_G65G66:C73C74_XX X 65 ? X 74 ? X 66 ? X 73 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R35GM141706 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R35GM122532 2 # _atom_sites.entry_id 9C6K _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N NA O P S # loop_