HEADER MEMBRANE PROTEIN 11-JUN-24 9C7U TITLE STRUCTURE OF THE HUMAN TRUNCATED BOS COMPLEX IN GDN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICALIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NICASTRIN-LIKE PROTEIN, BOS COMPLEX SUBUNIT NCLN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BOS COMPLEX SUBUNIT NOMO2; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 1-36,873-1222 (IG DOMAINS 1-9 DELETED); COMPND 10 SYNONYM: NODAL MODULATOR 2,PM5 PROTEIN 2; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: TRANSMEMBRANE PROTEIN 147; COMPND 14 CHAIN: C; COMPND 15 SYNONYM: PROTEIN NIFIE 14, BOS COMPLEX SUBUNIT TMEM147; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NCLN; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: NOMO2; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 GENE: TMEM147; SOURCE 22 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 23 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS MEMBRANE PROTEIN BIOGENESIS, MEMBRANE PROTEIN COMPLEX, MEMBRANE KEYWDS 2 PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR V.N.NGUYEN,G.P.TOMALERI,R.M.VOORHEES REVDAT 2 04-SEP-24 9C7U 1 JRNL REVDAT 1 21-AUG-24 9C7U 0 JRNL AUTH K.R.PAGE,V.N.NGUYEN,T.PLEINER,G.P.TOMALERI,M.L.WANG,A.GUNA, JRNL AUTH 2 M.HAZU,T.Y.WANG,T.F.CHOU,R.M.VOORHEES JRNL TITL ROLE OF A HOLO-INSERTASE COMPLEX IN THE BIOGENESIS OF JRNL TITL 2 BIOPHYSICALLY DIVERSE ER MEMBRANE PROTEINS. JRNL REF MOL.CELL 2024 JRNL REFN ISSN 1097-2765 JRNL PMID 39173640 JRNL DOI 10.1016/J.MOLCEL.2024.08.005 REMARK 2 REMARK 2 RESOLUTION. 3.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, UCSF CHIMERAX, CRYOSPARC, REMARK 3 CRYOSPARC, CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.650 REMARK 3 NUMBER OF PARTICLES : 115841 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9C7U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-24. REMARK 100 THE DEPOSITION ID IS D_1000284942. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN TRUNCATED BOS COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 4.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : HUMAN BOS COMPLEX OF TRUNCATED REMARK 245 NOMO (DELTA IG 1-9), TMEM147, AND NCLN REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 15929 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : DARK FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 VAL A 8 REMARK 465 LEU A 9 REMARK 465 GLU A 10 REMARK 465 ASN A 11 REMARK 465 MET A 12 REMARK 465 LEU A 13 REMARK 465 LYS A 14 REMARK 465 ALA A 15 REMARK 465 SER A 16 REMARK 465 CYS A 17 REMARK 465 LEU A 18 REMARK 465 PRO A 19 REMARK 465 LEU A 20 REMARK 465 GLY A 21 REMARK 465 PHE A 22 REMARK 465 ILE A 23 REMARK 465 VAL A 24 REMARK 465 PHE A 25 REMARK 465 LEU A 26 REMARK 465 PRO A 27 REMARK 465 ALA A 28 REMARK 465 VAL A 29 REMARK 465 LEU A 30 REMARK 465 LEU A 31 REMARK 465 LEU A 32 REMARK 465 VAL A 33 REMARK 465 ALA A 34 REMARK 465 PRO A 35 REMARK 465 PRO A 36 REMARK 465 LEU A 37 REMARK 465 PRO A 38 REMARK 465 ALA A 39 REMARK 465 ALA A 40 REMARK 465 ASP A 41 REMARK 465 ALA A 42 REMARK 465 GLN A 166 REMARK 465 GLY A 167 REMARK 465 SER A 168 REMARK 465 ALA A 169 REMARK 465 SER A 170 REMARK 465 ALA A 171 REMARK 465 GLN A 554 REMARK 465 ARG A 555 REMARK 465 LEU A 556 REMARK 465 LEU A 557 REMARK 465 VAL A 558 REMARK 465 LYS A 559 REMARK 465 ALA A 560 REMARK 465 LYS A 561 REMARK 465 THR A 562 REMARK 465 GLN A 563 REMARK 465 MET B 541 REMARK 465 LEU B 542 REMARK 465 VAL B 543 REMARK 465 GLY B 544 REMARK 465 GLN B 545 REMARK 465 GLY B 546 REMARK 465 ALA B 547 REMARK 465 GLY B 548 REMARK 465 LEU B 549 REMARK 465 LEU B 550 REMARK 465 GLY B 551 REMARK 465 PRO B 552 REMARK 465 ALA B 553 REMARK 465 VAL B 554 REMARK 465 VAL B 555 REMARK 465 THR B 556 REMARK 465 ALA B 557 REMARK 465 ALA B 558 REMARK 465 VAL B 559 REMARK 465 VAL B 560 REMARK 465 LEU B 561 REMARK 465 LEU B 562 REMARK 465 LEU B 563 REMARK 465 SER B 564 REMARK 465 GLY B 565 REMARK 465 VAL B 566 REMARK 465 GLY B 567 REMARK 465 PRO B 568 REMARK 465 ALA B 569 REMARK 465 HIS B 570 REMARK 465 GLY B 571 REMARK 465 SER B 572 REMARK 465 GLU B 573 REMARK 465 ASP B 574 REMARK 465 ILE B 575 REMARK 465 VAL B 576 REMARK 465 TYR B 577 REMARK 465 ALA B 578 REMARK 465 LEU B 579 REMARK 465 ALA B 580 REMARK 465 GLY B 581 REMARK 465 VAL B 582 REMARK 465 SER B 583 REMARK 465 PHE B 584 REMARK 465 GLU B 585 REMARK 465 ILE B 586 REMARK 465 LYS B 587 REMARK 465 ALA B 588 REMARK 465 GLU B 589 REMARK 465 ASP B 590 REMARK 465 ASP B 591 REMARK 465 GLN B 592 REMARK 465 PRO B 593 REMARK 465 LEU B 594 REMARK 465 PRO B 595 REMARK 465 GLY B 596 REMARK 465 VAL B 597 REMARK 465 LEU B 598 REMARK 465 LEU B 599 REMARK 465 SER B 600 REMARK 465 LEU B 601 REMARK 465 SER B 602 REMARK 465 GLY B 603 REMARK 465 GLY B 604 REMARK 465 LEU B 605 REMARK 465 PHE B 606 REMARK 465 ARG B 607 REMARK 465 SER B 608 REMARK 465 ASN B 609 REMARK 465 LEU B 610 REMARK 465 LEU B 611 REMARK 465 THR B 612 REMARK 465 GLN B 613 REMARK 465 ASP B 614 REMARK 465 ASN B 615 REMARK 465 GLY B 616 REMARK 465 ILE B 617 REMARK 465 LEU B 618 REMARK 465 THR B 619 REMARK 465 PHE B 620 REMARK 465 SER B 621 REMARK 465 ASN B 622 REMARK 465 LEU B 623 REMARK 465 SER B 624 REMARK 465 PRO B 625 REMARK 465 GLY B 626 REMARK 465 GLN B 627 REMARK 465 TYR B 628 REMARK 465 TYR B 629 REMARK 465 PHE B 630 REMARK 465 LYS B 631 REMARK 465 PRO B 632 REMARK 465 MET B 633 REMARK 465 MET B 634 REMARK 465 LYS B 635 REMARK 465 GLU B 636 REMARK 465 PHE B 637 REMARK 465 ARG B 638 REMARK 465 PHE B 639 REMARK 465 GLU B 640 REMARK 465 PRO B 641 REMARK 465 SER B 642 REMARK 465 SER B 643 REMARK 465 GLN B 644 REMARK 465 MET B 645 REMARK 465 ILE B 646 REMARK 465 GLU B 647 REMARK 465 VAL B 648 REMARK 465 GLN B 649 REMARK 465 GLU B 650 REMARK 465 GLY B 651 REMARK 465 GLN B 652 REMARK 465 ASN B 653 REMARK 465 LEU B 654 REMARK 465 LYS B 655 REMARK 465 ILE B 656 REMARK 465 THR B 657 REMARK 465 ILE B 658 REMARK 465 THR B 659 REMARK 465 GLY B 660 REMARK 465 TYR B 661 REMARK 465 ARG B 662 REMARK 465 THR B 663 REMARK 465 ALA B 664 REMARK 465 TYR B 665 REMARK 465 SER B 666 REMARK 465 CYS B 667 REMARK 465 LYS B 854 REMARK 465 LEU B 855 REMARK 465 PRO B 856 REMARK 465 GLU B 857 REMARK 465 GLN B 858 REMARK 465 ASP B 859 REMARK 465 ILE B 860 REMARK 465 ALA B 861 REMARK 465 GLN B 862 REMARK 465 GLY B 863 REMARK 465 SER B 864 REMARK 465 TYR B 865 REMARK 465 ILE B 866 REMARK 465 ALA B 867 REMARK 465 LEU B 868 REMARK 465 PRO B 869 REMARK 465 LEU B 870 REMARK 465 THR B 871 REMARK 465 LEU B 872 REMARK 465 LEU B 873 REMARK 465 VAL B 874 REMARK 465 LEU B 875 REMARK 465 LEU B 876 REMARK 465 ALA B 877 REMARK 465 GLY B 878 REMARK 465 TYR B 879 REMARK 465 ASN B 880 REMARK 465 HIS B 881 REMARK 465 ASP B 882 REMARK 465 LYS B 883 REMARK 465 LEU B 884 REMARK 465 ILE B 885 REMARK 465 PRO B 886 REMARK 465 LEU B 887 REMARK 465 LEU B 888 REMARK 465 LEU B 889 REMARK 465 GLN B 890 REMARK 465 LEU B 891 REMARK 465 THR B 892 REMARK 465 SER B 893 REMARK 465 ARG B 894 REMARK 465 LEU B 895 REMARK 465 GLN B 896 REMARK 465 GLY B 897 REMARK 465 VAL B 898 REMARK 465 GLY B 899 REMARK 465 ALA B 900 REMARK 465 LEU B 901 REMARK 465 GLY B 902 REMARK 465 GLN B 903 REMARK 465 ALA B 904 REMARK 465 ALA B 905 REMARK 465 SER B 906 REMARK 465 ASP B 907 REMARK 465 ASN B 908 REMARK 465 SER B 909 REMARK 465 GLY B 910 REMARK 465 PRO B 911 REMARK 465 GLU B 912 REMARK 465 ASP B 913 REMARK 465 ALA B 914 REMARK 465 LYS B 915 REMARK 465 ARG B 916 REMARK 465 GLN B 917 REMARK 465 ALA B 918 REMARK 465 LYS B 919 REMARK 465 LYS B 920 REMARK 465 GLN B 921 REMARK 465 LYS B 922 REMARK 465 THR B 923 REMARK 465 ARG B 924 REMARK 465 ARG B 925 REMARK 465 THR B 926 REMARK 465 MET C 1 REMARK 465 PHE C 57 REMARK 465 PRO C 58 REMARK 465 THR C 59 REMARK 465 TRP C 60 REMARK 465 GLU C 61 REMARK 465 GLY C 62 REMARK 465 GLY C 63 REMARK 465 ILE C 64 REMARK 465 TYR C 65 REMARK 465 ASP C 66 REMARK 465 PHE C 67 REMARK 465 LEU C 161 REMARK 465 TYR C 162 REMARK 465 SER C 191 REMARK 465 LEU C 192 REMARK 465 VAL C 222 REMARK 465 HIS C 223 REMARK 465 SER C 224 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 545 CG ND1 CD2 CE1 NE2 REMARK 470 PHE A 546 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 547 OG REMARK 470 LEU A 548 CG CD1 CD2 REMARK 470 LEU A 549 CG CD1 CD2 REMARK 470 TYR A 550 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 551 CG CD CE NZ REMARK 470 THR A 552 OG1 CG2 REMARK 470 VAL A 553 CG1 CG2 REMARK 470 PHE C 32 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TRP C 33 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 33 CZ3 CH2 REMARK 470 LYS C 34 CG CD CE NZ REMARK 470 CYS C 35 SG REMARK 470 VAL C 36 CG1 CG2 REMARK 470 GLN C 37 CG CD OE1 NE2 REMARK 470 VAL C 40 CG1 CG2 REMARK 470 THR C 41 OG1 CG2 REMARK 470 TYR C 42 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU C 43 CG CD1 CD2 REMARK 470 PHE C 44 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL C 45 CG1 CG2 REMARK 470 GLN C 46 CG CD OE1 NE2 REMARK 470 LEU C 47 CG CD1 CD2 REMARK 470 CYS C 48 SG REMARK 470 LYS C 49 CG CD CE NZ REMARK 470 MET C 50 CG SD CE REMARK 470 LEU C 51 CG CD1 CD2 REMARK 470 PHE C 52 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU C 53 CG CD1 CD2 REMARK 470 THR C 55 OG1 CG2 REMARK 470 PHE C 56 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE C 68 CG1 CG2 CD1 REMARK 470 GLU C 70 CG CD OE1 OE2 REMARK 470 PHE C 71 CG CD1 CD2 CE1 CE2 CZ REMARK 470 MET C 72 CG SD CE REMARK 470 LYS C 73 CG CD CE NZ REMARK 470 SER C 75 OG REMARK 470 VAL C 76 CG1 CG2 REMARK 470 ASP C 77 CG OD1 OD2 REMARK 470 VAL C 78 CG1 CG2 REMARK 470 ASP C 80 CG OD1 OD2 REMARK 470 LEU C 81 CG CD1 CD2 REMARK 470 ILE C 82 CG1 CG2 CD1 REMARK 470 LEU C 84 CG CD1 CD2 REMARK 470 ASN C 85 CG OD1 ND2 REMARK 470 LEU C 86 CG CD1 CD2 REMARK 470 VAL C 87 CG1 CG2 REMARK 470 MET C 88 CG SD CE REMARK 470 SER C 89 OG REMARK 470 ARG C 90 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 158 CG CD NE CZ NH1 NH2 REMARK 470 TYR C 159 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP C 160 CG OD1 OD2 REMARK 470 HIS C 163 CG ND1 CD2 CE1 NE2 REMARK 470 THR C 164 OG1 CG2 REMARK 470 PHE C 165 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG C 166 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 169 CG1 CG2 REMARK 470 LEU C 170 CG CD1 CD2 REMARK 470 LEU C 171 CG CD1 CD2 REMARK 470 LEU C 172 CG CD1 CD2 REMARK 470 MET C 173 CG SD CE REMARK 470 PHE C 174 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU C 175 CG CD1 CD2 REMARK 470 SER C 176 OG REMARK 470 VAL C 177 CG1 CG2 REMARK 470 TYR C 178 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS C 179 CG CD CE NZ REMARK 470 PHE C 181 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL C 182 CG1 CG2 REMARK 470 MET C 183 CG SD CE REMARK 470 GLU C 184 CG CD OE1 OE2 REMARK 470 THR C 185 OG1 CG2 REMARK 470 PHE C 186 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL C 187 CG1 CG2 REMARK 470 HIS C 188 CG ND1 CD2 CE1 NE2 REMARK 470 LEU C 189 CG CD1 CD2 REMARK 470 CYS C 190 SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 258 OG1 THR A 264 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 57 15.39 57.39 REMARK 500 ALA A 66 28.42 -140.78 REMARK 500 GLU A 78 -165.91 -79.59 REMARK 500 MET A 116 14.74 58.04 REMARK 500 GLU A 138 39.49 -99.42 REMARK 500 LEU A 211 -60.13 -90.55 REMARK 500 SER A 240 -168.42 -75.05 REMARK 500 ASN A 241 -7.03 -58.79 REMARK 500 SER A 299 157.46 79.44 REMARK 500 ASP A 303 -70.14 -63.35 REMARK 500 ASN A 304 45.60 -142.86 REMARK 500 THR A 313 57.45 37.08 REMARK 500 ALA A 369 -105.10 46.15 REMARK 500 ARG A 378 49.02 -89.26 REMARK 500 SER A 397 -106.06 60.84 REMARK 500 SER A 398 72.40 60.94 REMARK 500 GLU A 431 51.89 -95.80 REMARK 500 THR A 434 74.33 40.11 REMARK 500 GLN A 444 -8.27 71.74 REMARK 500 MET A 445 16.79 -142.20 REMARK 500 LYS A 496 -78.64 -84.82 REMARK 500 ALA A 497 -1.16 -153.52 REMARK 500 ASP A 498 -8.53 67.09 REMARK 500 LYS A 499 7.54 55.37 REMARK 500 ASP A 501 72.51 51.72 REMARK 500 GLN A 509 60.80 60.65 REMARK 500 ASN B 690 -138.82 57.02 REMARK 500 ARG B 710 -169.78 -126.44 REMARK 500 ASN B 744 51.05 -90.41 REMARK 500 ASN B 745 -174.82 -170.55 REMARK 500 THR B 776 35.20 -99.65 REMARK 500 PHE B 801 116.13 -161.77 REMARK 500 PHE B 804 132.54 -37.52 REMARK 500 THR B 837 122.36 -37.49 REMARK 500 ALA C 31 4.26 -67.00 REMARK 500 MET C 113 -158.28 -75.77 REMARK 500 SER C 114 28.02 -73.55 REMARK 500 ALA C 123 -179.95 58.85 REMARK 500 ARG C 124 -6.62 67.16 REMARK 500 ARG C 158 61.63 61.23 REMARK 500 TYR C 159 177.90 64.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-45293 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-45294 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-45295 RELATED DB: EMDB DBREF 9C7U A 1 563 UNP Q969V3 NCLN_HUMAN 1 563 DBREF 9C7U B 541 576 UNP Q5JPE7 NOMO2_HUMAN 1 36 DBREF 9C7U B 577 926 UNP Q5JPE7 NOMO2_HUMAN 873 1222 DBREF 9C7U C 1 224 UNP Q9BVK8 TM147_HUMAN 1 224 SEQRES 1 A 563 MET LEU GLU GLU ALA GLY GLU VAL LEU GLU ASN MET LEU SEQRES 2 A 563 LYS ALA SER CYS LEU PRO LEU GLY PHE ILE VAL PHE LEU SEQRES 3 A 563 PRO ALA VAL LEU LEU LEU VAL ALA PRO PRO LEU PRO ALA SEQRES 4 A 563 ALA ASP ALA ALA HIS GLU PHE THR VAL TYR ARG MET GLN SEQRES 5 A 563 GLN TYR ASP LEU GLN GLY GLN PRO TYR GLY THR ARG ASN SEQRES 6 A 563 ALA VAL LEU ASN THR GLU ALA ARG THR MET ALA ALA GLU SEQRES 7 A 563 VAL LEU SER ARG ARG CYS VAL LEU MET ARG LEU LEU ASP SEQRES 8 A 563 PHE SER TYR GLU GLN TYR GLN LYS ALA LEU ARG GLN SER SEQRES 9 A 563 ALA GLY ALA VAL VAL ILE ILE LEU PRO ARG ALA MET ALA SEQRES 10 A 563 ALA VAL PRO GLN ASP VAL VAL ARG GLN PHE MET GLU ILE SEQRES 11 A 563 GLU PRO GLU MET LEU ALA MET GLU THR ALA VAL PRO VAL SEQRES 12 A 563 TYR PHE ALA VAL GLU ASP GLU ALA LEU LEU SER ILE TYR SEQRES 13 A 563 LYS GLN THR GLN ALA ALA SER ALA SER GLN GLY SER ALA SEQRES 14 A 563 SER ALA ALA GLU VAL LEU LEU ARG THR ALA THR ALA ASN SEQRES 15 A 563 GLY PHE GLN MET VAL THR SER GLY VAL GLN SER LYS ALA SEQRES 16 A 563 VAL SER ASP TRP LEU ILE ALA SER VAL GLU GLY ARG LEU SEQRES 17 A 563 THR GLY LEU GLY GLY GLU ASP LEU PRO THR ILE VAL ILE SEQRES 18 A 563 VAL ALA HIS TYR ASP ALA PHE GLY VAL ALA PRO TRP LEU SEQRES 19 A 563 SER LEU GLY ALA ASP SER ASN GLY SER GLY VAL SER VAL SEQRES 20 A 563 LEU LEU GLU LEU ALA ARG LEU PHE SER ARG LEU TYR THR SEQRES 21 A 563 TYR LYS ARG THR HIS ALA ALA TYR ASN LEU LEU PHE PHE SEQRES 22 A 563 ALA SER GLY GLY GLY LYS PHE ASN TYR GLN GLY THR LYS SEQRES 23 A 563 ARG TRP LEU GLU ASP ASN LEU ASP HIS THR ASP SER SER SEQRES 24 A 563 LEU LEU GLN ASP ASN VAL ALA PHE VAL LEU CYS LEU ASP SEQRES 25 A 563 THR VAL GLY ARG GLY SER SER LEU HIS LEU HIS VAL SER SEQRES 26 A 563 LYS PRO PRO ARG GLU GLY THR LEU GLN HIS ALA PHE LEU SEQRES 27 A 563 ARG GLU LEU GLU THR VAL ALA ALA HIS GLN PHE PRO GLU SEQRES 28 A 563 VAL ARG PHE SER MET VAL HIS LYS ARG ILE ASN LEU ALA SEQRES 29 A 563 GLU ASP VAL LEU ALA TRP GLU HIS GLU ARG PHE ALA ILE SEQRES 30 A 563 ARG ARG LEU PRO ALA PHE THR LEU SER HIS LEU GLU SER SEQRES 31 A 563 HIS ARG ASP GLY GLN ARG SER SER ILE MET ASP VAL ARG SEQRES 32 A 563 SER ARG VAL ASP SER LYS THR LEU THR ARG ASN THR ARG SEQRES 33 A 563 ILE ILE ALA GLU ALA LEU THR ARG VAL ILE TYR ASN LEU SEQRES 34 A 563 THR GLU LYS GLY THR PRO PRO ASP MET PRO VAL PHE THR SEQRES 35 A 563 GLU GLN MET GLN ILE GLN GLN GLU GLN LEU ASP SER VAL SEQRES 36 A 563 MET ASP TRP LEU THR ASN GLN PRO ARG ALA ALA GLN LEU SEQRES 37 A 563 VAL ASP LYS ASP SER THR PHE LEU SER THR LEU GLU HIS SEQRES 38 A 563 HIS LEU SER ARG TYR LEU LYS ASP VAL LYS GLN HIS HIS SEQRES 39 A 563 VAL LYS ALA ASP LYS ARG ASP PRO GLU PHE VAL PHE TYR SEQRES 40 A 563 ASP GLN LEU LYS GLN VAL MET ASN ALA TYR ARG VAL LYS SEQRES 41 A 563 PRO ALA VAL PHE ASP LEU LEU LEU ALA VAL GLY ILE ALA SEQRES 42 A 563 ALA TYR LEU GLY MET ALA TYR VAL ALA VAL GLN HIS PHE SEQRES 43 A 563 SER LEU LEU TYR LYS THR VAL GLN ARG LEU LEU VAL LYS SEQRES 44 A 563 ALA LYS THR GLN SEQRES 1 B 386 MET LEU VAL GLY GLN GLY ALA GLY LEU LEU GLY PRO ALA SEQRES 2 B 386 VAL VAL THR ALA ALA VAL VAL LEU LEU LEU SER GLY VAL SEQRES 3 B 386 GLY PRO ALA HIS GLY SER GLU ASP ILE VAL TYR ALA LEU SEQRES 4 B 386 ALA GLY VAL SER PHE GLU ILE LYS ALA GLU ASP ASP GLN SEQRES 5 B 386 PRO LEU PRO GLY VAL LEU LEU SER LEU SER GLY GLY LEU SEQRES 6 B 386 PHE ARG SER ASN LEU LEU THR GLN ASP ASN GLY ILE LEU SEQRES 7 B 386 THR PHE SER ASN LEU SER PRO GLY GLN TYR TYR PHE LYS SEQRES 8 B 386 PRO MET MET LYS GLU PHE ARG PHE GLU PRO SER SER GLN SEQRES 9 B 386 MET ILE GLU VAL GLN GLU GLY GLN ASN LEU LYS ILE THR SEQRES 10 B 386 ILE THR GLY TYR ARG THR ALA TYR SER CYS TYR GLY THR SEQRES 11 B 386 VAL SER SER LEU ASN GLY GLU PRO GLU GLN GLY VAL ALA SEQRES 12 B 386 MET GLU ALA VAL GLY GLN ASN ASP CYS SER ILE TYR GLY SEQRES 13 B 386 GLU ASP THR VAL THR ASP GLU GLU GLY LYS PHE ARG LEU SEQRES 14 B 386 ARG GLY LEU LEU PRO GLY CYS VAL TYR HIS VAL GLN LEU SEQRES 15 B 386 LYS ALA GLU GLY ASN ASP HIS ILE GLU ARG ALA LEU PRO SEQRES 16 B 386 HIS HIS ARG VAL ILE GLU VAL GLY ASN ASN ASP ILE ASP SEQRES 17 B 386 ASP VAL ASN ILE ILE VAL PHE ARG GLN ILE ASN GLN PHE SEQRES 18 B 386 ASP LEU SER GLY ASN VAL ILE THR SER SER GLU TYR LEU SEQRES 19 B 386 PRO THR LEU TRP VAL LYS LEU TYR LYS SER GLU ASN LEU SEQRES 20 B 386 ASP ASN PRO ILE GLN THR VAL SER LEU GLY GLN SER LEU SEQRES 21 B 386 PHE PHE HIS PHE PRO PRO LEU LEU ARG ASP GLY GLU ASN SEQRES 22 B 386 TYR VAL VAL LEU LEU ASP SER THR LEU PRO ARG SER GLN SEQRES 23 B 386 TYR ASP TYR ILE LEU PRO GLN VAL SER PHE THR ALA VAL SEQRES 24 B 386 GLY TYR HIS LYS HIS ILE THR LEU ILE PHE ASN PRO THR SEQRES 25 B 386 ARG LYS LEU PRO GLU GLN ASP ILE ALA GLN GLY SER TYR SEQRES 26 B 386 ILE ALA LEU PRO LEU THR LEU LEU VAL LEU LEU ALA GLY SEQRES 27 B 386 TYR ASN HIS ASP LYS LEU ILE PRO LEU LEU LEU GLN LEU SEQRES 28 B 386 THR SER ARG LEU GLN GLY VAL GLY ALA LEU GLY GLN ALA SEQRES 29 B 386 ALA SER ASP ASN SER GLY PRO GLU ASP ALA LYS ARG GLN SEQRES 30 B 386 ALA LYS LYS GLN LYS THR ARG ARG THR SEQRES 1 C 224 MET THR LEU PHE HIS PHE GLY ASN CYS PHE ALA LEU ALA SEQRES 2 C 224 TYR PHE PRO TYR PHE ILE THR TYR LYS CYS SER GLY LEU SEQRES 3 C 224 SER GLU TYR ASN ALA PHE TRP LYS CYS VAL GLN ALA GLY SEQRES 4 C 224 VAL THR TYR LEU PHE VAL GLN LEU CYS LYS MET LEU PHE SEQRES 5 C 224 LEU ALA THR PHE PHE PRO THR TRP GLU GLY GLY ILE TYR SEQRES 6 C 224 ASP PHE ILE GLY GLU PHE MET LYS ALA SER VAL ASP VAL SEQRES 7 C 224 ALA ASP LEU ILE GLY LEU ASN LEU VAL MET SER ARG ASN SEQRES 8 C 224 ALA GLY LYS GLY GLU TYR LYS ILE MET VAL ALA ALA LEU SEQRES 9 C 224 GLY TRP ALA THR ALA GLU LEU ILE MET SER ARG CYS ILE SEQRES 10 C 224 PRO LEU TRP VAL GLY ALA ARG GLY ILE GLU PHE ASP TRP SEQRES 11 C 224 LYS TYR ILE GLN MET SER ILE ASP SER ASN ILE SER LEU SEQRES 12 C 224 VAL HIS TYR ILE VAL ALA SER ALA GLN VAL TRP MET ILE SEQRES 13 C 224 THR ARG TYR ASP LEU TYR HIS THR PHE ARG PRO ALA VAL SEQRES 14 C 224 LEU LEU LEU MET PHE LEU SER VAL TYR LYS ALA PHE VAL SEQRES 15 C 224 MET GLU THR PHE VAL HIS LEU CYS SER LEU GLY SER TRP SEQRES 16 C 224 ALA ALA LEU LEU ALA ARG ALA VAL VAL THR GLY LEU LEU SEQRES 17 C 224 ALA LEU SER THR LEU ALA LEU TYR VAL ALA VAL VAL ASN SEQRES 18 C 224 VAL HIS SER HET NAG A 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG C8 H15 N O6 HELIX 1 AA1 LEU A 90 PHE A 92 5 3 HELIX 2 AA2 SER A 93 GLN A 103 1 11 HELIX 3 AA3 PRO A 120 ALA A 136 1 17 HELIX 4 AA4 ASP A 149 SER A 165 1 17 HELIX 5 AA5 GLU A 173 THR A 180 1 8 HELIX 6 AA6 ALA A 231 SER A 235 5 5 HELIX 7 AA7 ASN A 241 TYR A 261 1 21 HELIX 8 AA8 LYS A 262 HIS A 265 5 4 HELIX 9 AA9 TYR A 282 ASN A 292 1 11 HELIX 10 AB1 THR A 332 GLN A 348 1 17 HELIX 11 AB2 GLU A 371 ARG A 378 1 8 HELIX 12 AB3 VAL A 402 VAL A 406 5 5 HELIX 13 AB4 ASP A 407 TYR A 427 1 21 HELIX 14 AB5 LEU A 429 GLY A 433 5 5 HELIX 15 AB6 GLN A 448 GLN A 462 1 15 HELIX 16 AB7 SER A 473 ARG A 485 1 13 HELIX 17 AB8 PRO A 521 VAL A 553 1 33 HELIX 18 AB9 GLN B 689 TYR B 695 5 7 HELIX 19 AC1 TYR B 773 PRO B 775 5 3 HELIX 20 AC2 LEU C 3 SER C 24 1 22 HELIX 21 AC3 GLY C 25 TYR C 29 5 5 HELIX 22 AC4 ALA C 31 PHE C 56 1 26 HELIX 23 AC5 GLY C 69 ASN C 91 1 23 HELIX 24 AC6 LYS C 94 MET C 113 1 20 HELIX 25 AC7 CYS C 116 GLY C 122 1 7 HELIX 26 AC8 TRP C 130 THR C 157 1 28 HELIX 27 AC9 PHE C 165 VAL C 177 1 13 HELIX 28 AD1 TYR C 178 CYS C 190 1 13 HELIX 29 AD2 SER C 194 VAL C 220 1 27 SHEET 1 AA1 4 HIS A 44 THR A 47 0 SHEET 2 AA1 4 VAL A 513 TYR A 517 -1 O ALA A 516 N HIS A 44 SHEET 3 AA1 4 GLN A 185 THR A 188 -1 N GLN A 185 O TYR A 517 SHEET 4 AA1 4 ASN A 69 GLU A 71 -1 N THR A 70 O MET A 186 SHEET 1 AA2 4 TYR A 49 ARG A 50 0 SHEET 2 AA2 4 VAL A 143 VAL A 147 -1 O PHE A 145 N TYR A 49 SHEET 3 AA2 4 ALA A 107 LEU A 112 1 N VAL A 108 O TYR A 144 SHEET 4 AA2 4 CYS A 84 ARG A 88 1 N VAL A 85 O ALA A 107 SHEET 1 AA3 2 ASP A 55 LEU A 56 0 SHEET 2 AA3 2 GLN A 59 PRO A 60 -1 O GLN A 59 N LEU A 56 SHEET 1 AA4 8 ARG A 353 HIS A 358 0 SHEET 2 AA4 8 SER A 319 VAL A 324 1 N VAL A 324 O VAL A 357 SHEET 3 AA4 8 ALA A 382 SER A 386 -1 O THR A 384 N HIS A 323 SHEET 4 AA4 8 VAL A 308 LEU A 311 1 N CYS A 310 O LEU A 385 SHEET 5 AA4 8 THR A 218 VAL A 222 1 N VAL A 220 O LEU A 309 SHEET 6 AA4 8 ASN A 269 SER A 275 1 O LEU A 271 N ILE A 219 SHEET 7 AA4 8 ILE A 201 ARG A 207 -1 N GLY A 206 O PHE A 272 SHEET 8 AA4 8 LYS A 488 VAL A 495 -1 O LYS A 488 N ARG A 207 SHEET 1 AA5 3 GLY B 669 SER B 672 0 SHEET 2 AA5 3 VAL B 750 ARG B 756 1 O ILE B 752 N THR B 670 SHEET 3 AA5 3 ILE B 730 ALA B 733 -1 N ARG B 732 O PHE B 755 SHEET 1 AA6 4 ASP B 698 VAL B 700 0 SHEET 2 AA6 4 ALA B 683 ALA B 686 -1 N MET B 684 O THR B 699 SHEET 3 AA6 4 TYR B 718 GLN B 721 -1 O GLN B 721 N GLU B 685 SHEET 4 AA6 4 ARG B 738 ILE B 740 -1 O ILE B 740 N TYR B 718 SHEET 1 AA7 2 LEU B 777 VAL B 779 0 SHEET 2 AA7 2 LEU B 818 SER B 820 -1 O ASP B 819 N TRP B 778 SSBOND 1 CYS B 692 CYS B 716 1555 1555 2.03 LINK ND2 ASN A 428 C1 NAG A 601 1555 1555 1.44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000