HEADER FLUORESCENT PROTEIN 07-JUL-24 9CJM TITLE RED FLUORESCENT PROTEIN MRUBY3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RED FLUORESCENT PROTEIN MRUBY3; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTACMAEA QUADRICOLOR; SOURCE 3 ORGANISM_TAXID: 6118; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA PHAGE ECSZW-2; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 2419741 KEYWDS RED FLUORESCENT PROTEIN, MRUBY3, BIOSENSOR, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.HUANG,H.L.NG,B.V.GEISBRECHT,H.DUAN,M.DENG,J.CHU REVDAT 1 08-OCT-25 9CJM 0 JRNL AUTH M.HUANG,M.DENG,S.ZHANG,B.V.GEISBRECHT,Y.ZOU,H.DUAN,M.LIN, JRNL AUTH 2 H.L.NG,J.CHU JRNL TITL CRYSTAL MODEL OF THE RED FLUORESCENT PROTEIN MRUBY3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 18447 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.280 REMARK 3 R VALUE (WORKING SET) : 0.278 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 958 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1285 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6980 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 22 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.55000 REMARK 3 B22 (A**2) : -2.62000 REMARK 3 B33 (A**2) : 7.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.592 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.473 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.522 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.812 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.766 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7230 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6721 ; 0.018 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9742 ; 1.741 ; 1.676 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15505 ; 1.607 ; 1.599 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 877 ; 7.565 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 401 ;33.564 ;21.895 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1236 ;19.363 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;18.189 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 883 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8207 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1709 ; 0.010 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3514 ; 0.769 ; 1.092 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3513 ; 0.769 ; 1.092 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4389 ; 1.427 ; 1.630 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4390 ; 1.427 ; 1.630 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3716 ; 0.566 ; 1.155 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3717 ; 0.566 ; 1.154 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5354 ; 1.025 ; 1.712 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 29525 ; 4.582 ;20.448 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 29526 ; 4.582 ;20.447 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9CJM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1000285546. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19445 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 91.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM TARTRATE DIBASIC, 20% REMARK 280 (W/V) PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 136.84050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 136.84050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.49900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.74700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.49900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.74700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 136.84050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.49900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.74700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 136.84050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.49900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.74700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -3 REMARK 465 VAL A -2 REMARK 465 SER A -1 REMARK 465 LYS A 0 REMARK 465 ASN A 223 REMARK 465 LEU A 224 REMARK 465 GLY A 225 REMARK 465 GLY A 226 REMARK 465 GLY A 227 REMARK 465 MET A 228 REMARK 465 ASP A 229 REMARK 465 GLU A 230 REMARK 465 LEU A 231 REMARK 465 TYR A 232 REMARK 465 LYS A 233 REMARK 465 MET B -3 REMARK 465 VAL B -2 REMARK 465 SER B -1 REMARK 465 LYS B 0 REMARK 465 ASN B 223 REMARK 465 LEU B 224 REMARK 465 GLY B 225 REMARK 465 GLY B 226 REMARK 465 GLY B 227 REMARK 465 MET B 228 REMARK 465 ASP B 229 REMARK 465 GLU B 230 REMARK 465 LEU B 231 REMARK 465 TYR B 232 REMARK 465 LYS B 233 REMARK 465 MET C -3 REMARK 465 VAL C -2 REMARK 465 SER C -1 REMARK 465 LYS C 0 REMARK 465 SER C 222 REMARK 465 ASN C 223 REMARK 465 LEU C 224 REMARK 465 GLY C 225 REMARK 465 GLY C 226 REMARK 465 GLY C 227 REMARK 465 MET C 228 REMARK 465 ASP C 229 REMARK 465 GLU C 230 REMARK 465 LEU C 231 REMARK 465 TYR C 232 REMARK 465 LYS C 233 REMARK 465 MET D -3 REMARK 465 VAL D -2 REMARK 465 SER D -1 REMARK 465 LYS D 0 REMARK 465 THR D 183 REMARK 465 VAL D 184 REMARK 465 GLY D 185 REMARK 465 ASN D 223 REMARK 465 LEU D 224 REMARK 465 GLY D 225 REMARK 465 GLY D 226 REMARK 465 GLY D 227 REMARK 465 MET D 228 REMARK 465 ASP D 229 REMARK 465 GLU D 230 REMARK 465 LEU D 231 REMARK 465 TYR D 232 REMARK 465 LYS D 233 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 201 OE1 GLU B 204 1.45 REMARK 500 O PHE D 84 NZ LYS D 182 1.60 REMARK 500 OD2 ASP C 75 OH TYR C 221 1.70 REMARK 500 OE2 GLU C 29 NH2 ARG C 42 1.86 REMARK 500 OE2 GLU B 29 NE ARG B 42 2.08 REMARK 500 OD1 ASP A 159 ND2 ASN A 173 2.10 REMARK 500 O3 NRQ A 64 NE2 GLN A 106 2.13 REMARK 500 OE1 GLN B 39 OG SER B 66 2.16 REMARK 500 OE1 GLN A 39 OG SER A 66 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 69 55.90 -100.82 REMARK 500 ALA A 150 106.21 -164.48 REMARK 500 ASP A 165 124.10 -39.98 REMARK 500 PHE B 69 51.59 -99.59 REMARK 500 ALA B 150 102.57 -164.80 REMARK 500 PRO C 52 20.35 -76.57 REMARK 500 ALA C 150 91.80 -161.63 REMARK 500 PHE D 69 58.25 -99.97 REMARK 500 ALA D 150 102.02 -162.45 REMARK 500 ASP D 151 86.88 48.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7RHA RELATED DB: PDB REMARK 900 RELATED ID: 7RHB RELATED DB: PDB REMARK 900 RELATED ID: 7RHC RELATED DB: PDB REMARK 900 RELATED ID: 7RHD RELATED DB: PDB DBREF 9CJM A -3 233 PDB 9CJM 9CJM -3 233 DBREF 9CJM B -3 233 PDB 9CJM 9CJM -3 233 DBREF 9CJM C -3 233 PDB 9CJM 9CJM -3 233 DBREF 9CJM D -3 233 PDB 9CJM 9CJM -3 233 SEQRES 1 A 235 MET VAL SER LYS GLY GLU GLU LEU ILE LYS GLU ASN MET SEQRES 2 A 235 ARG MET LYS VAL VAL MET GLU GLY SER VAL ASN GLY HIS SEQRES 3 A 235 GLN PHE LYS CYS THR GLY GLU GLY GLU GLY ARG PRO TYR SEQRES 4 A 235 GLU GLY VAL GLN THR MET ARG ILE LYS VAL ILE GLU GLY SEQRES 5 A 235 GLY PRO LEU PRO PHE ALA PHE ASP ILE LEU ALA THR SER SEQRES 6 A 235 PHE NRQ SER ARG THR PHE ILE LYS TYR PRO ALA ASP ILE SEQRES 7 A 235 PRO ASP PHE PHE LYS GLN SER PHE PRO GLU GLY PHE THR SEQRES 8 A 235 TRP GLU ARG VAL THR ARG TYR GLU ASP GLY GLY VAL VAL SEQRES 9 A 235 THR VAL THR GLN ASP THR SER LEU GLU ASP GLY GLU LEU SEQRES 10 A 235 VAL TYR ASN VAL LYS VAL ARG GLY VAL ASN PHE PRO SER SEQRES 11 A 235 ASN GLY PRO VAL MET GLN LYS LYS THR LYS GLY TRP GLU SEQRES 12 A 235 PRO ASN THR GLU MET MET TYR PRO ALA ASP GLY GLY LEU SEQRES 13 A 235 ARG GLY TYR THR ASP ILE ALA LEU LYS VAL ASP GLY GLY SEQRES 14 A 235 GLY HIS LEU HIS CYS ASN PHE VAL THR THR TYR ARG SER SEQRES 15 A 235 LYS LYS THR VAL GLY ASN ILE LYS MET PRO GLY VAL HIS SEQRES 16 A 235 ALA VAL ASP HIS ARG LEU GLU ARG ILE GLU GLU SER ASP SEQRES 17 A 235 ASN GLU THR TYR VAL VAL GLN ARG GLU VAL ALA VAL ALA SEQRES 18 A 235 LYS TYR SER ASN LEU GLY GLY GLY MET ASP GLU LEU TYR SEQRES 19 A 235 LYS SEQRES 1 B 235 MET VAL SER LYS GLY GLU GLU LEU ILE LYS GLU ASN MET SEQRES 2 B 235 ARG MET LYS VAL VAL MET GLU GLY SER VAL ASN GLY HIS SEQRES 3 B 235 GLN PHE LYS CYS THR GLY GLU GLY GLU GLY ARG PRO TYR SEQRES 4 B 235 GLU GLY VAL GLN THR MET ARG ILE LYS VAL ILE GLU GLY SEQRES 5 B 235 GLY PRO LEU PRO PHE ALA PHE ASP ILE LEU ALA THR SER SEQRES 6 B 235 PHE NRQ SER ARG THR PHE ILE LYS TYR PRO ALA ASP ILE SEQRES 7 B 235 PRO ASP PHE PHE LYS GLN SER PHE PRO GLU GLY PHE THR SEQRES 8 B 235 TRP GLU ARG VAL THR ARG TYR GLU ASP GLY GLY VAL VAL SEQRES 9 B 235 THR VAL THR GLN ASP THR SER LEU GLU ASP GLY GLU LEU SEQRES 10 B 235 VAL TYR ASN VAL LYS VAL ARG GLY VAL ASN PHE PRO SER SEQRES 11 B 235 ASN GLY PRO VAL MET GLN LYS LYS THR LYS GLY TRP GLU SEQRES 12 B 235 PRO ASN THR GLU MET MET TYR PRO ALA ASP GLY GLY LEU SEQRES 13 B 235 ARG GLY TYR THR ASP ILE ALA LEU LYS VAL ASP GLY GLY SEQRES 14 B 235 GLY HIS LEU HIS CYS ASN PHE VAL THR THR TYR ARG SER SEQRES 15 B 235 LYS LYS THR VAL GLY ASN ILE LYS MET PRO GLY VAL HIS SEQRES 16 B 235 ALA VAL ASP HIS ARG LEU GLU ARG ILE GLU GLU SER ASP SEQRES 17 B 235 ASN GLU THR TYR VAL VAL GLN ARG GLU VAL ALA VAL ALA SEQRES 18 B 235 LYS TYR SER ASN LEU GLY GLY GLY MET ASP GLU LEU TYR SEQRES 19 B 235 LYS SEQRES 1 C 235 MET VAL SER LYS GLY GLU GLU LEU ILE LYS GLU ASN MET SEQRES 2 C 235 ARG MET LYS VAL VAL MET GLU GLY SER VAL ASN GLY HIS SEQRES 3 C 235 GLN PHE LYS CYS THR GLY GLU GLY GLU GLY ARG PRO TYR SEQRES 4 C 235 GLU GLY VAL GLN THR MET ARG ILE LYS VAL ILE GLU GLY SEQRES 5 C 235 GLY PRO LEU PRO PHE ALA PHE ASP ILE LEU ALA THR SER SEQRES 6 C 235 PHE NRQ SER ARG THR PHE ILE LYS TYR PRO ALA ASP ILE SEQRES 7 C 235 PRO ASP PHE PHE LYS GLN SER PHE PRO GLU GLY PHE THR SEQRES 8 C 235 TRP GLU ARG VAL THR ARG TYR GLU ASP GLY GLY VAL VAL SEQRES 9 C 235 THR VAL THR GLN ASP THR SER LEU GLU ASP GLY GLU LEU SEQRES 10 C 235 VAL TYR ASN VAL LYS VAL ARG GLY VAL ASN PHE PRO SER SEQRES 11 C 235 ASN GLY PRO VAL MET GLN LYS LYS THR LYS GLY TRP GLU SEQRES 12 C 235 PRO ASN THR GLU MET MET TYR PRO ALA ASP GLY GLY LEU SEQRES 13 C 235 ARG GLY TYR THR ASP ILE ALA LEU LYS VAL ASP GLY GLY SEQRES 14 C 235 GLY HIS LEU HIS CYS ASN PHE VAL THR THR TYR ARG SER SEQRES 15 C 235 LYS LYS THR VAL GLY ASN ILE LYS MET PRO GLY VAL HIS SEQRES 16 C 235 ALA VAL ASP HIS ARG LEU GLU ARG ILE GLU GLU SER ASP SEQRES 17 C 235 ASN GLU THR TYR VAL VAL GLN ARG GLU VAL ALA VAL ALA SEQRES 18 C 235 LYS TYR SER ASN LEU GLY GLY GLY MET ASP GLU LEU TYR SEQRES 19 C 235 LYS SEQRES 1 D 235 MET VAL SER LYS GLY GLU GLU LEU ILE LYS GLU ASN MET SEQRES 2 D 235 ARG MET LYS VAL VAL MET GLU GLY SER VAL ASN GLY HIS SEQRES 3 D 235 GLN PHE LYS CYS THR GLY GLU GLY GLU GLY ARG PRO TYR SEQRES 4 D 235 GLU GLY VAL GLN THR MET ARG ILE LYS VAL ILE GLU GLY SEQRES 5 D 235 GLY PRO LEU PRO PHE ALA PHE ASP ILE LEU ALA THR SER SEQRES 6 D 235 PHE NRQ SER ARG THR PHE ILE LYS TYR PRO ALA ASP ILE SEQRES 7 D 235 PRO ASP PHE PHE LYS GLN SER PHE PRO GLU GLY PHE THR SEQRES 8 D 235 TRP GLU ARG VAL THR ARG TYR GLU ASP GLY GLY VAL VAL SEQRES 9 D 235 THR VAL THR GLN ASP THR SER LEU GLU ASP GLY GLU LEU SEQRES 10 D 235 VAL TYR ASN VAL LYS VAL ARG GLY VAL ASN PHE PRO SER SEQRES 11 D 235 ASN GLY PRO VAL MET GLN LYS LYS THR LYS GLY TRP GLU SEQRES 12 D 235 PRO ASN THR GLU MET MET TYR PRO ALA ASP GLY GLY LEU SEQRES 13 D 235 ARG GLY TYR THR ASP ILE ALA LEU LYS VAL ASP GLY GLY SEQRES 14 D 235 GLY HIS LEU HIS CYS ASN PHE VAL THR THR TYR ARG SER SEQRES 15 D 235 LYS LYS THR VAL GLY ASN ILE LYS MET PRO GLY VAL HIS SEQRES 16 D 235 ALA VAL ASP HIS ARG LEU GLU ARG ILE GLU GLU SER ASP SEQRES 17 D 235 ASN GLU THR TYR VAL VAL GLN ARG GLU VAL ALA VAL ALA SEQRES 18 D 235 LYS TYR SER ASN LEU GLY GLY GLY MET ASP GLU LEU TYR SEQRES 19 D 235 LYS HET NRQ A 64 23 HET NRQ B 64 23 HET NRQ C 64 23 HET NRQ D 64 23 HET EDO A 301 4 HETNAM NRQ {(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO) HETNAM 2 NRQ PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 NRQ YL}ACETIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN NRQ CHROMOPHORE (MET-TYR-GLY) HETSYN EDO ETHYLENE GLYCOL FORMUL 1 NRQ 4(C16 H17 N3 O4 S) FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *22(H2 O) HELIX 1 AA1 PHE A 55 THR A 60 1 6 HELIX 2 AA2 PHE A 80 PHE A 84 5 5 HELIX 3 AA3 PHE B 55 THR B 60 1 6 HELIX 4 AA4 SER B 61 PHE B 62 5 2 HELIX 5 AA5 SER B 66 THR B 68 5 3 HELIX 6 AA6 PHE B 80 PHE B 84 5 5 HELIX 7 AA7 PHE C 55 THR C 60 1 6 HELIX 8 AA8 PHE C 80 PHE C 84 5 5 HELIX 9 AA9 PHE D 55 THR D 60 1 6 HELIX 10 AB1 PHE D 80 PHE D 84 5 5 SHEET 1 AA113 THR A 137 TRP A 140 0 SHEET 2 AA113 GLY A 153 VAL A 164 -1 O LYS A 163 N GLY A 139 SHEET 3 AA113 HIS A 169 SER A 180 -1 O LEU A 170 N LEU A 162 SHEET 4 AA113 PHE A 88 TYR A 96 -1 N THR A 89 O ARG A 179 SHEET 5 AA113 VAL A 101 GLU A 111 -1 O VAL A 102 N THR A 94 SHEET 6 AA113 GLU A 114 VAL A 124 -1 O VAL A 116 N SER A 109 SHEET 7 AA113 MET A 9 VAL A 19 1 N SER A 18 O GLY A 123 SHEET 8 AA113 HIS A 22 ARG A 33 -1 O CYS A 26 N MET A 15 SHEET 9 AA113 VAL A 38 GLU A 47 -1 O ARG A 42 N GLU A 29 SHEET 10 AA113 TYR A 210 LYS A 220 -1 O VAL A 211 N ILE A 43 SHEET 11 AA113 HIS A 193 SER A 205 -1 N GLU A 200 O ARG A 214 SHEET 12 AA113 ASN A 143 ALA A 150 -1 N ASN A 143 O HIS A 197 SHEET 13 AA113 GLY A 153 VAL A 164 -1 O ARG A 155 N TYR A 148 SHEET 1 AA211 ILE B 70 LYS B 71 0 SHEET 2 AA211 TYR B 210 LYS B 220 1 O ALA B 219 N LYS B 71 SHEET 3 AA211 VAL B 38 GLU B 47 -1 N ILE B 43 O VAL B 211 SHEET 4 AA211 HIS B 22 ARG B 33 -1 N GLU B 29 O ARG B 42 SHEET 5 AA211 MET B 9 VAL B 19 -1 N MET B 15 O CYS B 26 SHEET 6 AA211 GLU B 114 VAL B 124 1 O GLY B 123 N SER B 18 SHEET 7 AA211 VAL B 101 GLU B 111 -1 N SER B 109 O VAL B 116 SHEET 8 AA211 PHE B 88 TYR B 96 -1 N THR B 94 O VAL B 102 SHEET 9 AA211 HIS B 169 SER B 180 -1 O ARG B 179 N THR B 89 SHEET 10 AA211 GLY B 153 VAL B 164 -1 N LEU B 162 O LEU B 170 SHEET 11 AA211 THR B 137 TRP B 140 -1 N GLY B 139 O LYS B 163 SHEET 1 AA3 6 ILE B 70 LYS B 71 0 SHEET 2 AA3 6 TYR B 210 LYS B 220 1 O ALA B 219 N LYS B 71 SHEET 3 AA3 6 HIS B 193 SER B 205 -1 N GLU B 200 O ARG B 214 SHEET 4 AA3 6 ASN B 143 ALA B 150 -1 N ASN B 143 O HIS B 197 SHEET 5 AA3 6 GLY B 153 VAL B 164 -1 O ARG B 155 N TYR B 148 SHEET 6 AA3 6 THR B 137 TRP B 140 -1 N GLY B 139 O LYS B 163 SHEET 1 AA413 THR C 137 TRP C 140 0 SHEET 2 AA413 GLY C 153 VAL C 164 -1 O LYS C 163 N GLY C 139 SHEET 3 AA413 HIS C 169 SER C 180 -1 O LEU C 170 N LEU C 162 SHEET 4 AA413 PHE C 88 TYR C 96 -1 N THR C 89 O ARG C 179 SHEET 5 AA413 VAL C 101 GLU C 111 -1 O VAL C 102 N THR C 94 SHEET 6 AA413 GLU C 114 VAL C 124 -1 O VAL C 116 N SER C 109 SHEET 7 AA413 MET C 9 VAL C 19 1 N SER C 18 O GLY C 123 SHEET 8 AA413 HIS C 22 ARG C 33 -1 O CYS C 26 N MET C 15 SHEET 9 AA413 VAL C 38 GLU C 47 -1 O LYS C 44 N THR C 27 SHEET 10 AA413 TYR C 210 LYS C 220 -1 O VAL C 211 N ILE C 43 SHEET 11 AA413 HIS C 193 SER C 205 -1 N GLU C 200 O ARG C 214 SHEET 12 AA413 ASN C 143 ALA C 150 -1 N MET C 147 O HIS C 193 SHEET 13 AA413 GLY C 153 VAL C 164 -1 O TYR C 157 N MET C 146 SHEET 1 AA513 THR D 137 TRP D 140 0 SHEET 2 AA513 GLY D 153 VAL D 164 -1 O LYS D 163 N GLY D 139 SHEET 3 AA513 HIS D 169 SER D 180 -1 O LEU D 170 N LEU D 162 SHEET 4 AA513 PHE D 88 TYR D 96 -1 N THR D 89 O ARG D 179 SHEET 5 AA513 VAL D 101 GLU D 111 -1 O VAL D 102 N THR D 94 SHEET 6 AA513 GLU D 114 VAL D 124 -1 O ARG D 122 N THR D 103 SHEET 7 AA513 MET D 9 VAL D 19 1 N SER D 18 O GLY D 123 SHEET 8 AA513 HIS D 22 ARG D 33 -1 O CYS D 26 N MET D 15 SHEET 9 AA513 VAL D 38 GLU D 47 -1 O ARG D 42 N GLU D 29 SHEET 10 AA513 TYR D 210 LYS D 220 -1 O VAL D 211 N ILE D 43 SHEET 11 AA513 HIS D 193 SER D 205 -1 N GLU D 200 O ARG D 214 SHEET 12 AA513 ASN D 143 PRO D 149 -1 N ASN D 143 O HIS D 197 SHEET 13 AA513 GLY D 153 VAL D 164 -1 O ARG D 155 N TYR D 148 LINK C PHE A 62 N1 NRQ A 64 1555 1555 1.42 LINK C3 NRQ A 64 N SER A 66 1555 1555 1.41 LINK C PHE B 62 N1 NRQ B 64 1555 1555 1.44 LINK C3 NRQ B 64 N SER B 66 1555 1555 1.40 LINK C PHE C 62 N1 NRQ C 64 1555 1555 1.44 LINK C3 NRQ C 64 N SER C 66 1555 1555 1.38 LINK C PHE D 62 N1 NRQ D 64 1555 1555 1.40 LINK C3 NRQ D 64 N SER D 66 1555 1555 1.38 CISPEP 1 GLY A 49 PRO A 50 0 -15.98 CISPEP 2 PHE A 84 PRO A 85 0 8.82 CISPEP 3 GLY B 49 PRO B 50 0 -5.48 CISPEP 4 PHE B 84 PRO B 85 0 8.33 CISPEP 5 GLY C 49 PRO C 50 0 -13.24 CISPEP 6 PHE C 84 PRO C 85 0 8.59 CISPEP 7 GLY D 49 PRO D 50 0 -1.71 CISPEP 8 PHE D 84 PRO D 85 0 8.72 CRYST1 72.998 101.494 273.681 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013699 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009853 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003654 0.00000 CONECT 470 479 CONECT 479 470 484 CONECT 480 481 CONECT 481 480 482 CONECT 482 481 483 CONECT 483 482 484 CONECT 484 479 483 485 CONECT 485 484 486 498 CONECT 486 485 495 CONECT 487 490 CONECT 488 489 493 CONECT 489 488 490 CONECT 490 487 489 491 CONECT 491 490 492 CONECT 492 491 493 CONECT 493 488 492 494 CONECT 494 493 495 CONECT 495 486 494 496 CONECT 496 495 497 498 CONECT 497 496 CONECT 498 485 496 499 CONECT 499 498 500 CONECT 500 499 501 502 CONECT 501 500 CONECT 502 500 CONECT 2255 2264 CONECT 2264 2255 2269 CONECT 2265 2266 CONECT 2266 2265 2267 CONECT 2267 2266 2268 CONECT 2268 2267 2269 CONECT 2269 2264 2268 2270 CONECT 2270 2269 2271 2283 CONECT 2271 2270 2280 CONECT 2272 2275 CONECT 2273 2274 2278 CONECT 2274 2273 2275 CONECT 2275 2272 2274 2276 CONECT 2276 2275 2277 CONECT 2277 2276 2278 CONECT 2278 2273 2277 2279 CONECT 2279 2278 2280 CONECT 2280 2271 2279 2281 CONECT 2281 2280 2282 2283 CONECT 2282 2281 CONECT 2283 2270 2281 2284 CONECT 2284 2283 2285 CONECT 2285 2284 2286 2287 CONECT 2286 2285 CONECT 2287 2285 CONECT 4029 4038 CONECT 4038 4029 4043 CONECT 4039 4040 CONECT 4040 4039 4041 CONECT 4041 4040 4042 CONECT 4042 4041 4043 CONECT 4043 4038 4042 4044 CONECT 4044 4043 4045 4057 CONECT 4045 4044 4054 CONECT 4046 4049 CONECT 4047 4048 4052 CONECT 4048 4047 4049 CONECT 4049 4046 4048 4050 CONECT 4050 4049 4051 CONECT 4051 4050 4052 CONECT 4052 4047 4051 4053 CONECT 4053 4052 4054 CONECT 4054 4045 4053 4055 CONECT 4055 4054 4056 4057 CONECT 4056 4055 CONECT 4057 4044 4055 4058 CONECT 4058 4057 4059 CONECT 4059 4058 4060 4061 CONECT 4060 4059 CONECT 4061 4059 CONECT 5786 5795 CONECT 5795 5786 5800 CONECT 5796 5797 CONECT 5797 5796 5798 CONECT 5798 5797 5799 CONECT 5799 5798 5800 CONECT 5800 5795 5799 5801 CONECT 5801 5800 5802 5814 CONECT 5802 5801 5811 CONECT 5803 5806 CONECT 5804 5805 5809 CONECT 5805 5804 5806 CONECT 5806 5803 5805 5807 CONECT 5807 5806 5808 CONECT 5808 5807 5809 CONECT 5809 5804 5808 5810 CONECT 5810 5809 5811 CONECT 5811 5802 5810 5812 CONECT 5812 5811 5813 5814 CONECT 5813 5812 CONECT 5814 5801 5812 5815 CONECT 5815 5814 5816 CONECT 5816 5815 5817 5818 CONECT 5817 5816 CONECT 5818 5816 CONECT 7061 7062 7063 CONECT 7062 7061 CONECT 7063 7061 7064 CONECT 7064 7063 MASTER 401 0 5 10 56 0 0 6 7006 4 104 76 END