data_9CLJ # _entry.id 9CLJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.402 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9CLJ pdb_00009clj 10.2210/pdb9clj/pdb WWPDB D_1000285822 ? ? EMDB EMD-45676 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-03-05 ? 2 'EM metadata' 1 0 2025-03-05 ? 3 FSC 1 0 2025-03-05 ? 4 'Half map' 1 0 2025-03-05 1 5 'Half map' 1 0 2025-03-05 2 6 Image 1 0 2025-03-05 ? 7 'Primary map' 1 0 2025-03-05 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9CLJ _pdbx_database_status.recvd_initial_deposition_date 2024-07-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'HIV-2 CA T=1 Icosahedron; assembled via lipid templating' _pdbx_database_related.db_id EMD-45676 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email yong.xiong@yale.edu _pdbx_contact_author.name_first Yong _pdbx_contact_author.name_last Xiong _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-9625-9313 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Cook, M.' 1 0000-0002-8641-820X 'Freniere, C.' 2 0000-0003-2846-669X 'Xiong, Y.' 3 0000-0001-9625-9313 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2211-1247 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 44 _citation.language ? _citation.page_first 115245 _citation.page_last 115245 _citation.title 'Structural insights into HIV-2 CA lattice formation and FG-pocket binding revealed by single-particle cryo-EM.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.celrep.2025.115245 _citation.pdbx_database_id_PubMed 39864060 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cook, M.' 1 ? primary 'Freniere, C.' 2 ? primary 'Wu, C.' 3 ? primary 'Lozano, F.' 4 ? primary 'Xiong, Y.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Capsid protein p24' 26809.490 1 ? ? ? ;Full length HIV-2 GL-AN capsid protein with a C-terminal Gly-Ser-Ser linker to a hexahistidine tag following proteolytic processing of N-terminal Met. ; 2 non-polymer syn 'INOSITOL HEXAKISPHOSPHATE' 660.035 2 ? ? ? ? 3 water nat water 18.015 130 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name CA # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PVQQTGGGNYIHVPLSPRTLNAWVKLVEDKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIREIINDEAADW DAQHPIPGPLPAGQLRDPRGSDIAGTTSTVEEQIQWMYRPQNPVPVGNIYRRWIQIGLQKCVRMYNPTNILDVKQGPKEP FQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGVGGPGQKARLMGSSHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;PVQQTGGGNYIHVPLSPRTLNAWVKLVEDKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIREIINDEAADW DAQHPIPGPLPAGQLRDPRGSDIAGTTSTVEEQIQWMYRPQNPVPVGNIYRRWIQIGLQKCVRMYNPTNILDVKQGPKEP FQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGVGGPGQKARLMGSSHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'INOSITOL HEXAKISPHOSPHATE' IHP 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 VAL n 1 3 GLN n 1 4 GLN n 1 5 THR n 1 6 GLY n 1 7 GLY n 1 8 GLY n 1 9 ASN n 1 10 TYR n 1 11 ILE n 1 12 HIS n 1 13 VAL n 1 14 PRO n 1 15 LEU n 1 16 SER n 1 17 PRO n 1 18 ARG n 1 19 THR n 1 20 LEU n 1 21 ASN n 1 22 ALA n 1 23 TRP n 1 24 VAL n 1 25 LYS n 1 26 LEU n 1 27 VAL n 1 28 GLU n 1 29 ASP n 1 30 LYS n 1 31 LYS n 1 32 PHE n 1 33 GLY n 1 34 ALA n 1 35 GLU n 1 36 VAL n 1 37 VAL n 1 38 PRO n 1 39 GLY n 1 40 PHE n 1 41 GLN n 1 42 ALA n 1 43 LEU n 1 44 SER n 1 45 GLU n 1 46 GLY n 1 47 CYS n 1 48 THR n 1 49 PRO n 1 50 TYR n 1 51 ASP n 1 52 ILE n 1 53 ASN n 1 54 GLN n 1 55 MET n 1 56 LEU n 1 57 ASN n 1 58 CYS n 1 59 VAL n 1 60 GLY n 1 61 ASP n 1 62 HIS n 1 63 GLN n 1 64 ALA n 1 65 ALA n 1 66 MET n 1 67 GLN n 1 68 ILE n 1 69 ILE n 1 70 ARG n 1 71 GLU n 1 72 ILE n 1 73 ILE n 1 74 ASN n 1 75 ASP n 1 76 GLU n 1 77 ALA n 1 78 ALA n 1 79 ASP n 1 80 TRP n 1 81 ASP n 1 82 ALA n 1 83 GLN n 1 84 HIS n 1 85 PRO n 1 86 ILE n 1 87 PRO n 1 88 GLY n 1 89 PRO n 1 90 LEU n 1 91 PRO n 1 92 ALA n 1 93 GLY n 1 94 GLN n 1 95 LEU n 1 96 ARG n 1 97 ASP n 1 98 PRO n 1 99 ARG n 1 100 GLY n 1 101 SER n 1 102 ASP n 1 103 ILE n 1 104 ALA n 1 105 GLY n 1 106 THR n 1 107 THR n 1 108 SER n 1 109 THR n 1 110 VAL n 1 111 GLU n 1 112 GLU n 1 113 GLN n 1 114 ILE n 1 115 GLN n 1 116 TRP n 1 117 MET n 1 118 TYR n 1 119 ARG n 1 120 PRO n 1 121 GLN n 1 122 ASN n 1 123 PRO n 1 124 VAL n 1 125 PRO n 1 126 VAL n 1 127 GLY n 1 128 ASN n 1 129 ILE n 1 130 TYR n 1 131 ARG n 1 132 ARG n 1 133 TRP n 1 134 ILE n 1 135 GLN n 1 136 ILE n 1 137 GLY n 1 138 LEU n 1 139 GLN n 1 140 LYS n 1 141 CYS n 1 142 VAL n 1 143 ARG n 1 144 MET n 1 145 TYR n 1 146 ASN n 1 147 PRO n 1 148 THR n 1 149 ASN n 1 150 ILE n 1 151 LEU n 1 152 ASP n 1 153 VAL n 1 154 LYS n 1 155 GLN n 1 156 GLY n 1 157 PRO n 1 158 LYS n 1 159 GLU n 1 160 PRO n 1 161 PHE n 1 162 GLN n 1 163 SER n 1 164 TYR n 1 165 VAL n 1 166 ASP n 1 167 ARG n 1 168 PHE n 1 169 TYR n 1 170 LYS n 1 171 SER n 1 172 LEU n 1 173 ARG n 1 174 ALA n 1 175 GLU n 1 176 GLN n 1 177 THR n 1 178 ASP n 1 179 PRO n 1 180 ALA n 1 181 VAL n 1 182 LYS n 1 183 ASN n 1 184 TRP n 1 185 MET n 1 186 THR n 1 187 GLN n 1 188 THR n 1 189 LEU n 1 190 LEU n 1 191 ILE n 1 192 GLN n 1 193 ASN n 1 194 ALA n 1 195 ASN n 1 196 PRO n 1 197 ASP n 1 198 CYS n 1 199 LYS n 1 200 LEU n 1 201 VAL n 1 202 LEU n 1 203 LYS n 1 204 GLY n 1 205 LEU n 1 206 GLY n 1 207 MET n 1 208 ASN n 1 209 PRO n 1 210 THR n 1 211 LEU n 1 212 GLU n 1 213 GLU n 1 214 MET n 1 215 LEU n 1 216 THR n 1 217 ALA n 1 218 CYS n 1 219 GLN n 1 220 GLY n 1 221 VAL n 1 222 GLY n 1 223 GLY n 1 224 PRO n 1 225 GLY n 1 226 GLN n 1 227 LYS n 1 228 ALA n 1 229 ARG n 1 230 LEU n 1 231 MET n 1 232 GLY n 1 233 SER n 1 234 SER n 1 235 HIS n 1 236 HIS n 1 237 HIS n 1 238 HIS n 1 239 HIS n 1 240 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 240 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene gag-pol _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain GL-AN _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 2' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11709 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 IHP non-polymer . 'INOSITOL HEXAKISPHOSPHATE' 'MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' 'C6 H18 O24 P6' 660.035 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 HIS 12 12 12 HIS HIS A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 TRP 23 23 23 TRP TRP A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 PHE 32 32 32 PHE PHE A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 CYS 47 47 47 CYS CYS A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 ASN 53 53 53 ASN ASN A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 MET 55 55 55 MET MET A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 CYS 58 58 58 CYS CYS A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 HIS 62 62 62 HIS HIS A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 MET 66 66 66 MET MET A . n A 1 67 GLN 67 67 67 GLN GLN A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 TRP 80 80 80 TRP TRP A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 HIS 84 84 84 HIS HIS A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 PRO 89 89 89 PRO PRO A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 GLN 94 94 94 GLN GLN A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 ILE 103 103 103 ILE ILE A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 GLN 113 113 113 GLN GLN A . n A 1 114 ILE 114 114 114 ILE ILE A . n A 1 115 GLN 115 115 115 GLN GLN A . n A 1 116 TRP 116 116 116 TRP TRP A . n A 1 117 MET 117 117 117 MET MET A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 ARG 119 119 119 ARG ARG A . n A 1 120 PRO 120 120 120 PRO PRO A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 ASN 122 122 122 ASN ASN A . n A 1 123 PRO 123 123 123 PRO PRO A . n A 1 124 VAL 124 124 124 VAL VAL A . n A 1 125 PRO 125 125 125 PRO PRO A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 ASN 128 128 128 ASN ASN A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 TYR 130 130 130 TYR TYR A . n A 1 131 ARG 131 131 131 ARG ARG A . n A 1 132 ARG 132 132 132 ARG ARG A . n A 1 133 TRP 133 133 133 TRP TRP A . n A 1 134 ILE 134 134 134 ILE ILE A . n A 1 135 GLN 135 135 135 GLN GLN A . n A 1 136 ILE 136 136 136 ILE ILE A . n A 1 137 GLY 137 137 137 GLY GLY A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 GLN 139 139 139 GLN GLN A . n A 1 140 LYS 140 140 140 LYS LYS A . n A 1 141 CYS 141 141 141 CYS CYS A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 ARG 143 143 143 ARG ARG A . n A 1 144 MET 144 144 144 MET MET A . n A 1 145 TYR 145 145 145 TYR TYR A . n A 1 146 ASN 146 146 146 ASN ASN A . n A 1 147 PRO 147 147 147 PRO PRO A . n A 1 148 THR 148 148 148 THR THR A . n A 1 149 ASN 149 149 149 ASN ASN A . n A 1 150 ILE 150 150 150 ILE ILE A . n A 1 151 LEU 151 151 151 LEU LEU A . n A 1 152 ASP 152 152 152 ASP ASP A . n A 1 153 VAL 153 153 153 VAL VAL A . n A 1 154 LYS 154 154 154 LYS LYS A . n A 1 155 GLN 155 155 155 GLN GLN A . n A 1 156 GLY 156 156 156 GLY GLY A . n A 1 157 PRO 157 157 157 PRO PRO A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 GLU 159 159 159 GLU GLU A . n A 1 160 PRO 160 160 160 PRO PRO A . n A 1 161 PHE 161 161 161 PHE PHE A . n A 1 162 GLN 162 162 162 GLN GLN A . n A 1 163 SER 163 163 163 SER SER A . n A 1 164 TYR 164 164 164 TYR TYR A . n A 1 165 VAL 165 165 165 VAL VAL A . n A 1 166 ASP 166 166 166 ASP ASP A . n A 1 167 ARG 167 167 167 ARG ARG A . n A 1 168 PHE 168 168 168 PHE PHE A . n A 1 169 TYR 169 169 169 TYR TYR A . n A 1 170 LYS 170 170 170 LYS LYS A . n A 1 171 SER 171 171 171 SER SER A . n A 1 172 LEU 172 172 172 LEU LEU A . n A 1 173 ARG 173 173 173 ARG ARG A . n A 1 174 ALA 174 174 174 ALA ALA A . n A 1 175 GLU 175 175 175 GLU GLU A . n A 1 176 GLN 176 176 176 GLN GLN A . n A 1 177 THR 177 177 177 THR THR A . n A 1 178 ASP 178 178 178 ASP ASP A . n A 1 179 PRO 179 179 179 PRO PRO A . n A 1 180 ALA 180 180 180 ALA ALA A . n A 1 181 VAL 181 181 181 VAL VAL A . n A 1 182 LYS 182 182 182 LYS LYS A . n A 1 183 ASN 183 183 183 ASN ASN A . n A 1 184 TRP 184 184 184 TRP TRP A . n A 1 185 MET 185 185 185 MET MET A . n A 1 186 THR 186 186 186 THR THR A . n A 1 187 GLN 187 187 187 GLN GLN A . n A 1 188 THR 188 188 188 THR THR A . n A 1 189 LEU 189 189 189 LEU LEU A . n A 1 190 LEU 190 190 190 LEU LEU A . n A 1 191 ILE 191 191 191 ILE ILE A . n A 1 192 GLN 192 192 192 GLN GLN A . n A 1 193 ASN 193 193 193 ASN ASN A . n A 1 194 ALA 194 194 194 ALA ALA A . n A 1 195 ASN 195 195 195 ASN ASN A . n A 1 196 PRO 196 196 196 PRO PRO A . n A 1 197 ASP 197 197 197 ASP ASP A . n A 1 198 CYS 198 198 198 CYS CYS A . n A 1 199 LYS 199 199 199 LYS LYS A . n A 1 200 LEU 200 200 200 LEU LEU A . n A 1 201 VAL 201 201 201 VAL VAL A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 LYS 203 203 203 LYS LYS A . n A 1 204 GLY 204 204 204 GLY GLY A . n A 1 205 LEU 205 205 205 LEU LEU A . n A 1 206 GLY 206 206 206 GLY GLY A . n A 1 207 MET 207 207 207 MET MET A . n A 1 208 ASN 208 208 208 ASN ASN A . n A 1 209 PRO 209 209 209 PRO PRO A . n A 1 210 THR 210 210 210 THR THR A . n A 1 211 LEU 211 211 211 LEU LEU A . n A 1 212 GLU 212 212 212 GLU GLU A . n A 1 213 GLU 213 213 213 GLU GLU A . n A 1 214 MET 214 214 214 MET MET A . n A 1 215 LEU 215 215 215 LEU LEU A . n A 1 216 THR 216 216 216 THR THR A . n A 1 217 ALA 217 217 217 ALA ALA A . n A 1 218 CYS 218 218 218 CYS CYS A . n A 1 219 GLN 219 219 219 GLN GLN A . n A 1 220 GLY 220 220 220 GLY GLY A . n A 1 221 VAL 221 221 221 VAL VAL A . n A 1 222 GLY 222 222 222 GLY GLY A . n A 1 223 GLY 223 223 ? ? ? A . n A 1 224 PRO 224 224 ? ? ? A . n A 1 225 GLY 225 225 ? ? ? A . n A 1 226 GLN 226 226 ? ? ? A . n A 1 227 LYS 227 227 ? ? ? A . n A 1 228 ALA 228 228 ? ? ? A . n A 1 229 ARG 229 229 ? ? ? A . n A 1 230 LEU 230 230 ? ? ? A . n A 1 231 MET 231 231 ? ? ? A . n A 1 232 GLY 232 232 ? ? ? A . n A 1 233 SER 233 233 ? ? ? A . n A 1 234 SER 234 234 ? ? ? A . n A 1 235 HIS 235 235 ? ? ? A . n A 1 236 HIS 236 236 ? ? ? A . n A 1 237 HIS 237 237 ? ? ? A . n A 1 238 HIS 238 238 ? ? ? A . n A 1 239 HIS 239 239 ? ? ? A . n A 1 240 HIS 240 240 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IHP 1 301 301 IHP IHP A . C 2 IHP 1 302 302 IHP IHP A . D 3 HOH 1 401 401 HOH HOH A . D 3 HOH 2 402 402 HOH HOH A . D 3 HOH 3 403 403 HOH HOH A . D 3 HOH 4 404 404 HOH HOH A . D 3 HOH 5 405 405 HOH HOH A . D 3 HOH 6 406 406 HOH HOH A . D 3 HOH 7 407 407 HOH HOH A . D 3 HOH 8 408 408 HOH HOH A . D 3 HOH 9 409 409 HOH HOH A . D 3 HOH 10 410 410 HOH HOH A . D 3 HOH 11 411 411 HOH HOH A . D 3 HOH 12 412 412 HOH HOH A . D 3 HOH 13 413 413 HOH HOH A . D 3 HOH 14 414 414 HOH HOH A . D 3 HOH 15 415 415 HOH HOH A . D 3 HOH 16 416 416 HOH HOH A . D 3 HOH 17 417 417 HOH HOH A . D 3 HOH 18 418 418 HOH HOH A . D 3 HOH 19 419 419 HOH HOH A . D 3 HOH 20 420 420 HOH HOH A . D 3 HOH 21 421 421 HOH HOH A . D 3 HOH 22 422 422 HOH HOH A . D 3 HOH 23 423 423 HOH HOH A . D 3 HOH 24 424 424 HOH HOH A . D 3 HOH 25 425 425 HOH HOH A . D 3 HOH 26 426 426 HOH HOH A . D 3 HOH 27 427 427 HOH HOH A . D 3 HOH 28 428 428 HOH HOH A . D 3 HOH 29 429 429 HOH HOH A . D 3 HOH 30 430 430 HOH HOH A . D 3 HOH 31 431 431 HOH HOH A . D 3 HOH 32 432 432 HOH HOH A . D 3 HOH 33 433 433 HOH HOH A . D 3 HOH 34 434 434 HOH HOH A . D 3 HOH 35 435 435 HOH HOH A . D 3 HOH 36 436 436 HOH HOH A . D 3 HOH 37 437 437 HOH HOH A . D 3 HOH 38 438 438 HOH HOH A . D 3 HOH 39 439 439 HOH HOH A . D 3 HOH 40 440 440 HOH HOH A . D 3 HOH 41 441 441 HOH HOH A . D 3 HOH 42 442 442 HOH HOH A . D 3 HOH 43 443 443 HOH HOH A . D 3 HOH 44 444 444 HOH HOH A . D 3 HOH 45 445 445 HOH HOH A . D 3 HOH 46 446 446 HOH HOH A . D 3 HOH 47 447 447 HOH HOH A . D 3 HOH 48 448 448 HOH HOH A . D 3 HOH 49 449 449 HOH HOH A . D 3 HOH 50 450 450 HOH HOH A . D 3 HOH 51 451 451 HOH HOH A . D 3 HOH 52 452 452 HOH HOH A . D 3 HOH 53 453 453 HOH HOH A . D 3 HOH 54 454 454 HOH HOH A . D 3 HOH 55 455 455 HOH HOH A . D 3 HOH 56 456 456 HOH HOH A . D 3 HOH 57 457 457 HOH HOH A . D 3 HOH 58 458 458 HOH HOH A . D 3 HOH 59 459 459 HOH HOH A . D 3 HOH 60 460 460 HOH HOH A . D 3 HOH 61 461 461 HOH HOH A . D 3 HOH 62 462 462 HOH HOH A . D 3 HOH 63 463 463 HOH HOH A . D 3 HOH 64 464 464 HOH HOH A . D 3 HOH 65 465 465 HOH HOH A . D 3 HOH 66 466 466 HOH HOH A . D 3 HOH 67 467 467 HOH HOH A . D 3 HOH 68 468 468 HOH HOH A . D 3 HOH 69 469 469 HOH HOH A . D 3 HOH 70 470 470 HOH HOH A . D 3 HOH 71 471 471 HOH HOH A . D 3 HOH 72 472 472 HOH HOH A . D 3 HOH 73 473 473 HOH HOH A . D 3 HOH 74 474 474 HOH HOH A . D 3 HOH 75 475 475 HOH HOH A . D 3 HOH 76 476 476 HOH HOH A . D 3 HOH 77 477 477 HOH HOH A . D 3 HOH 78 478 478 HOH HOH A . D 3 HOH 79 479 479 HOH HOH A . D 3 HOH 80 480 480 HOH HOH A . D 3 HOH 81 481 481 HOH HOH A . D 3 HOH 82 482 482 HOH HOH A . D 3 HOH 83 483 483 HOH HOH A . D 3 HOH 84 484 484 HOH HOH A . D 3 HOH 85 485 485 HOH HOH A . D 3 HOH 86 486 486 HOH HOH A . D 3 HOH 87 487 487 HOH HOH A . D 3 HOH 88 488 488 HOH HOH A . D 3 HOH 89 489 489 HOH HOH A . D 3 HOH 90 490 490 HOH HOH A . D 3 HOH 91 491 491 HOH HOH A . D 3 HOH 92 492 492 HOH HOH A . D 3 HOH 93 493 493 HOH HOH A . D 3 HOH 94 494 494 HOH HOH A . D 3 HOH 95 495 495 HOH HOH A . D 3 HOH 96 496 496 HOH HOH A . D 3 HOH 97 497 497 HOH HOH A . D 3 HOH 98 498 498 HOH HOH A . D 3 HOH 99 499 499 HOH HOH A . D 3 HOH 100 500 500 HOH HOH A . D 3 HOH 101 501 501 HOH HOH A . D 3 HOH 102 502 502 HOH HOH A . D 3 HOH 103 503 503 HOH HOH A . D 3 HOH 104 504 504 HOH HOH A . D 3 HOH 105 505 505 HOH HOH A . D 3 HOH 106 506 506 HOH HOH A . D 3 HOH 107 507 507 HOH HOH A . D 3 HOH 108 508 508 HOH HOH A . D 3 HOH 109 509 509 HOH HOH A . D 3 HOH 110 510 510 HOH HOH A . D 3 HOH 111 511 511 HOH HOH A . D 3 HOH 112 512 512 HOH HOH A . D 3 HOH 113 513 513 HOH HOH A . D 3 HOH 114 514 514 HOH HOH A . D 3 HOH 115 515 515 HOH HOH A . D 3 HOH 116 516 516 HOH HOH A . D 3 HOH 117 517 517 HOH HOH A . D 3 HOH 118 518 518 HOH HOH A . D 3 HOH 119 519 519 HOH HOH A . D 3 HOH 120 520 520 HOH HOH A . D 3 HOH 121 521 521 HOH HOH A . D 3 HOH 122 522 522 HOH HOH A . D 3 HOH 123 523 523 HOH HOH A . D 3 HOH 124 524 524 HOH HOH A . D 3 HOH 125 525 525 HOH HOH A . D 3 HOH 126 526 526 HOH HOH A . D 3 HOH 127 527 527 HOH HOH A . D 3 HOH 128 528 528 HOH HOH A . D 3 HOH 129 529 529 HOH HOH A . D 3 HOH 130 530 530 HOH HOH A . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9CLJ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9CLJ _struct.title 'HIV-2 CA T=1 Icosahedron; assembled via lipid templating' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9CLJ _struct_keywords.text 'HIV-2, Capsid, IP6, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_HV2G1 _struct_ref.pdbx_db_accession P18042 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PVQQTGGGNYIHVPLSPRTLNAWVKLVEDKKFGAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIREIINDEAADW DAQHPIPGPLPAGQLRDPRGSDIAGTTSTVEEQIQWMYRPQNPVPVGNIYRRWIQIGLQKCVRMYNPTNILDVKQGPKEP FQSYVDRFYKSLRAEQTDPAVKNWMTQTLLIQNANPDCKLVLKGLGMNPTLEEMLTACQGVGGPGQKARLM ; _struct_ref.pdbx_align_begin 136 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9CLJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 231 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P18042 _struct_ref_seq.db_align_beg 136 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 366 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 231 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9CLJ GLY A 232 ? UNP P18042 ? ? 'expression tag' 232 1 1 9CLJ SER A 233 ? UNP P18042 ? ? 'expression tag' 233 2 1 9CLJ SER A 234 ? UNP P18042 ? ? 'expression tag' 234 3 1 9CLJ HIS A 235 ? UNP P18042 ? ? 'expression tag' 235 4 1 9CLJ HIS A 236 ? UNP P18042 ? ? 'expression tag' 236 5 1 9CLJ HIS A 237 ? UNP P18042 ? ? 'expression tag' 237 6 1 9CLJ HIS A 238 ? UNP P18042 ? ? 'expression tag' 238 7 1 9CLJ HIS A 239 ? UNP P18042 ? ? 'expression tag' 239 8 1 9CLJ HIS A 240 ? UNP P18042 ? ? 'expression tag' 240 9 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 60-meric 60 2 'icosahedral asymmetric unit' ? monomeric 1 3 'icosahedral pentamer' ? pentameric 5 4 'icosahedral 23 hexamer' ? hexameric 6 5 'icosahedral asymmetric unit, std point frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B,C,D 2 1 A,B,C,D 3 '(1-5)' A,B,C,D 4 '(1,2,6,10,23,24)' A,B,C,D 5 P A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'Assembly of HIV-2 CA, templated on functionalized micelles, consisting of a T=1 icosahedral array of 12 pentamers.' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.00000386 1.00000000 0.00000000 -179.42467 -0.00000009 0.00000000 -1.00000000 179.42400 -1.00000000 0.00000386 0.00000009 179.42327 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.80901705 0.49999800 0.30902009 -110.89032 -0.50000186 0.30901699 0.80901585 68.53440 0.30901384 -0.80901823 0.49999994 179.42478 3 'point symmetry operation' ? ? 0.50000015 0.30901190 0.80901885 -110.88957 -0.30902200 -0.80901699 0.49999690 290.31554 0.80901499 -0.50000315 -0.30901714 179.42494 4 'point symmetry operation' ? ? 0.50000015 -0.30902200 0.80901499 0.00123 0.30901190 -0.80901699 -0.50000315 358.84944 0.80901885 0.49999691 -0.30901714 0.00026 5 'point symmetry operation' ? ? 0.80901705 -0.50000186 0.30901384 68.53475 0.49999800 0.30901699 -0.80901823 179.42456 0.30902009 0.80901585 0.49999994 -110.89045 6 'point symmetry operation' ? ? 1.00000000 -0.00000772 -0.00000018 0.00142 -0.00000772 -1.00000000 0.00000000 358.84934 -0.00000018 0.00000000 -1.00000000 358.84800 7 'point symmetry operation' ? ? 0.80902085 0.49999576 0.30901375 -110.88947 0.49999561 -0.30902085 -0.80901823 290.31580 -0.30901399 0.80901814 -0.50000000 179.42324 8 'point symmetry operation' ? ? 0.50000239 0.30901823 0.80901505 -110.89042 0.30901814 0.80901461 -0.50000315 68.53465 -0.80901508 0.50000309 0.30901699 179.42308 9 'point symmetry operation' ? ? 0.49999761 -0.30901585 0.80901891 -0.00013 -0.30901576 0.80901938 0.49999690 -0.00010 -0.80901894 -0.49999685 0.30901699 358.84774 10 'point symmetry operation' ? ? 0.80901313 -0.50000439 0.30902000 68.53480 -0.50000424 -0.30901313 0.80901585 179.42425 -0.30902023 -0.80901576 -0.50000000 469.73844 11 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000018 358.84793 0.00000000 -1.00000000 0.00000000 358.84795 0.00000018 0.00000000 1.00000000 -0.00003 12 'point symmetry operation' ? ? -0.80901699 -0.49999814 -0.30902000 469.73828 0.50000186 -0.30901699 -0.80901585 290.31356 0.30901399 -0.80901814 0.50000000 179.42473 13 'point symmetry operation' ? ? -0.50000000 -0.30901199 -0.80901891 469.73752 0.30902200 0.80901699 -0.49999690 68.53241 0.80901508 -0.50000309 -0.30901699 179.42488 14 'point symmetry operation' ? ? -0.50000000 0.30902209 -0.80901505 358.84670 -0.30901190 0.80901699 0.50000315 -0.00148 0.80901894 0.49999685 -0.30901699 0.00022 15 'point symmetry operation' ? ? -0.80901699 0.50000200 -0.30901375 290.31316 -0.49999800 -0.30901699 0.80901823 179.42339 0.30902023 0.80901576 0.50000000 -110.89047 16 'point symmetry operation' ? ? -1.00000000 0.00000772 0.00000000 358.84657 0.00000772 1.00000000 0.00000000 -0.00139 0.00000000 0.00000000 -1.00000000 358.84797 17 'point symmetry operation' ? ? -0.80902091 -0.49999561 -0.30901384 469.73743 -0.49999561 0.30902085 0.80901823 68.53215 -0.30901384 0.80901823 -0.49999994 179.42319 18 'point symmetry operation' ? ? -0.50000253 -0.30901814 -0.80901499 469.73838 -0.30901814 -0.80901461 0.50000315 290.31330 -0.80901499 0.50000315 0.30901714 179.42303 19 'point symmetry operation' ? ? -0.49999776 0.30901576 -0.80901885 358.84812 0.30901576 -0.80901938 -0.49999690 358.84805 -0.80901885 -0.49999691 0.30901714 358.84771 20 'point symmetry operation' ? ? -0.80901319 0.50000424 -0.30902009 290.31321 0.50000424 0.30901313 -0.80901585 179.42371 -0.30902009 -0.80901585 -0.49999994 469.73842 21 'point symmetry operation' ? ? -0.00000377 -0.00000009 1.00000000 0.00069 -1.00000000 0.00000386 -0.00000377 358.84794 -0.00000386 -1.00000000 -0.00000009 358.84867 22 'point symmetry operation' ? ? 0.30901084 -0.80902014 0.49999871 179.42588 -0.80902014 -0.49999375 -0.30901885 469.73785 0.49999871 -0.30901885 -0.80901708 290.31469 23 'point symmetry operation' ? ? 0.80901313 -0.50000424 -0.30902023 179.42601 -0.50000439 -0.30901313 -0.80901576 469.73795 0.30902000 0.80901585 -0.50000000 68.53354 24 'point symmetry operation' ? ? 0.80901694 0.49999814 -0.30902014 0.00091 -0.50000200 0.30901699 -0.80901576 358.84810 -0.30901390 0.80901814 0.50000006 -0.00077 25 'point symmetry operation' ? ? 0.30901699 0.80901770 0.49999885 -110.89004 -0.80901628 0.50000000 -0.30901885 290.31430 -0.50000115 -0.30901514 0.80901699 179.42385 26 'point symmetry operation' ? ? -0.00000395 0.00000009 -1.00000000 358.84866 -1.00000000 0.00000386 0.00000395 358.84655 0.00000386 1.00000000 0.00000009 -0.00070 27 'point symmetry operation' ? ? -0.30901708 0.80901628 -0.50000109 179.42432 -0.80901776 -0.50000000 -0.30901499 469.73785 -0.49999871 0.30901885 0.80901708 68.53328 28 'point symmetry operation' ? ? -0.80901699 0.50000186 0.30901399 179.42418 -0.49999814 -0.30901699 -0.80901814 469.73795 -0.30902000 -0.80901585 0.50000000 290.31443 29 'point symmetry operation' ? ? -0.80902080 -0.49999576 0.30901390 358.84843 -0.49999576 0.30902085 -0.80901814 358.84671 0.30901390 -0.80901814 -0.50000006 358.84874 30 'point symmetry operation' ? ? -0.30902324 -0.80901384 -0.50000124 469.73885 -0.80901390 0.50000625 -0.30901499 290.31206 0.50000115 0.30901514 -0.80901699 179.42412 31 'point symmetry operation' ? ? 0.00000395 0.00000009 1.00000000 -0.00073 1.00000000 -0.00000386 -0.00000395 0.00140 0.00000386 1.00000000 -0.00000009 -0.00067 32 'point symmetry operation' ? ? 0.30901699 -0.80901623 0.50000124 179.42362 0.80901776 0.50000000 0.30901499 -110.88990 -0.49999876 0.30901900 0.80901699 68.53328 33 'point symmetry operation' ? ? 0.80901694 -0.50000200 -0.30901390 179.42379 0.49999814 0.30901699 0.80901814 -110.89000 -0.30902014 -0.80901576 0.50000006 290.31443 34 'point symmetry operation' ? ? 0.80902085 0.49999561 -0.30901399 -0.00044 0.49999576 -0.30902085 0.80901814 0.00124 0.30901375 -0.80901823 -0.50000000 358.84877 35 'point symmetry operation' ? ? 0.30902333 0.80901390 0.50000109 -110.89090 0.80901390 -0.50000625 0.30901499 68.53589 0.50000109 0.30901499 -0.80901708 179.42417 36 'point symmetry operation' ? ? 0.00000377 -0.00000009 -1.00000000 358.84730 1.00000000 -0.00000386 0.00000377 0.00001 -0.00000386 -1.00000000 0.00000009 358.84864 37 'point symmetry operation' ? ? -0.30901075 0.80902009 -0.49999885 179.42210 0.80902014 0.49999375 0.30901885 -110.88990 0.49999876 -0.30901900 -0.80901699 290.31469 38 'point symmetry operation' ? ? -0.80901308 0.50000439 0.30902014 179.42192 0.50000439 0.30901313 0.80901576 -110.89000 0.30902014 0.80901576 -0.50000006 68.53354 39 'point symmetry operation' ? ? -0.80901699 -0.49999800 0.30902023 358.84701 0.50000200 -0.30901699 0.80901576 -0.00014 -0.30901375 0.80901823 0.50000000 -0.00080 40 'point symmetry operation' ? ? -0.30901708 -0.80901776 -0.49999871 469.73800 0.80901628 -0.50000000 0.30901885 68.53365 -0.50000109 -0.30901499 0.80901708 179.42380 41 'point symmetry operation' ? ? -0.00000377 -1.00000000 -0.00000386 358.84933 -0.00000009 0.00000386 -1.00000000 358.84728 1.00000000 -0.00000377 -0.00000009 0.00070 42 'point symmetry operation' ? ? 0.49999761 -0.30901576 -0.80901894 290.31466 -0.30901585 0.80901938 -0.49999685 179.42278 0.80901891 0.49999691 0.30901699 -110.88990 43 'point symmetry operation' ? ? 0.30901699 0.80901776 -0.49999876 68.53351 -0.80901623 0.50000000 0.30901900 179.42348 0.50000124 0.30901499 0.80901699 -110.88998 44 'point symmetry operation' ? ? -0.30901690 0.80901623 0.50000129 -0.00011 -0.80901770 -0.50000000 0.30901514 358.84841 0.49999891 -0.30901900 0.80901690 0.00057 45 'point symmetry operation' ? ? -0.50000224 -0.30901823 0.80901514 179.42493 -0.30901823 -0.80901461 -0.50000309 469.73842 0.80901514 -0.50000309 0.30901685 68.53478 46 'point symmetry operation' ? ? 0.00000395 1.00000000 0.00000386 -0.00140 0.00000009 -0.00000386 1.00000000 0.00067 1.00000000 -0.00000395 -0.00000009 0.00073 47 'point symmetry operation' ? ? -0.49999747 0.30901585 0.80901900 68.53325 0.30901585 -0.80901938 0.49999685 179.42517 0.80901900 0.49999685 0.30901685 -110.88988 48 'point symmetry operation' ? ? -0.30901690 -0.80901770 0.49999891 290.31440 0.80901623 -0.50000000 -0.30901900 179.42447 0.50000129 0.30901514 0.80901690 -110.89000 49 'point symmetry operation' ? ? 0.30901699 -0.80901628 -0.50000115 358.84804 0.80901770 0.50000000 -0.30901514 -0.00046 0.49999885 -0.30901885 0.80901699 0.00054 50 'point symmetry operation' ? ? 0.50000239 0.30901814 -0.80901508 179.42301 0.30901823 0.80901461 0.50000309 -110.89047 0.80901505 -0.50000315 0.30901699 68.53478 51 'point symmetry operation' ? ? 0.00000377 1.00000000 -0.00000386 0.00002 -0.00000009 -0.00000386 -1.00000000 358.84867 -1.00000000 0.00000377 0.00000009 358.84727 52 'point symmetry operation' ? ? -0.50000000 0.30902200 0.80901508 68.53330 -0.30901199 0.80901699 -0.50000309 179.42364 -0.80901891 -0.49999691 -0.30901699 469.73787 53 'point symmetry operation' ? ? -0.30902324 -0.80901390 0.50000115 290.31445 -0.80901384 0.50000625 0.30901514 179.42262 -0.50000124 -0.30901499 -0.80901699 469.73795 54 'point symmetry operation' ? ? 0.30901066 -0.80902009 -0.49999891 358.84946 -0.80902009 -0.49999375 0.30901900 358.84703 -0.49999891 0.30901900 -0.80901690 358.84740 55 'point symmetry operation' ? ? 0.49999985 0.30901199 -0.80901900 179.42527 -0.30902209 -0.80901699 -0.49999685 469.73842 -0.80901514 0.50000309 -0.30901685 290.31319 56 'point symmetry operation' ? ? -0.00000395 -1.00000000 0.00000386 358.84797 0.00000009 0.00000386 1.00000000 -0.00072 -1.00000000 0.00000395 0.00000009 358.84724 57 'point symmetry operation' ? ? 0.49999985 -0.30902209 -0.80901514 290.31471 0.30901199 -0.80901699 0.50000309 179.42432 -0.80901900 -0.49999685 -0.30901685 469.73785 58 'point symmetry operation' ? ? 0.30902315 0.80901384 -0.50000129 68.53356 0.80901384 -0.50000625 -0.30901514 179.42533 -0.50000129 -0.30901514 -0.80901690 469.73797 59 'point symmetry operation' ? ? -0.30901075 0.80902014 0.49999876 -0.00147 0.80902009 0.49999375 -0.30901900 0.00093 -0.49999885 0.30901885 -0.80901699 358.84743 60 'point symmetry operation' ? ? -0.50000000 -0.30901190 0.80901894 179.42271 0.30902209 0.80901699 0.49999685 -110.89047 -0.80901505 0.50000315 -0.30901699 290.31319 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 16 ? LYS A 30 ? SER A 16 LYS A 30 1 ? 15 HELX_P HELX_P2 AA2 GLU A 35 ? SER A 44 ? GLU A 35 SER A 44 1 ? 10 HELX_P HELX_P3 AA3 THR A 48 ? VAL A 59 ? THR A 48 VAL A 59 1 ? 12 HELX_P HELX_P4 AA4 HIS A 62 ? HIS A 84 ? HIS A 62 HIS A 84 1 ? 23 HELX_P HELX_P5 AA5 ARG A 99 ? GLY A 105 ? ARG A 99 GLY A 105 1 ? 7 HELX_P HELX_P6 AA6 THR A 109 ? TYR A 118 ? THR A 109 TYR A 118 1 ? 10 HELX_P HELX_P7 AA7 PRO A 125 ? ASN A 146 ? PRO A 125 ASN A 146 1 ? 22 HELX_P HELX_P8 AA8 PRO A 160 ? GLU A 175 ? PRO A 160 GLU A 175 1 ? 16 HELX_P HELX_P9 AA9 ASP A 178 ? THR A 188 ? ASP A 178 THR A 188 1 ? 11 HELX_P HELX_P10 AB1 THR A 188 ? ASN A 193 ? THR A 188 ASN A 193 1 ? 6 HELX_P HELX_P11 AB2 ASN A 195 ? GLY A 206 ? ASN A 195 GLY A 206 1 ? 12 HELX_P HELX_P12 AB3 THR A 210 ? GLN A 219 ? THR A 210 GLN A 219 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 2 ? GLN A 4 ? VAL A 2 GLN A 4 AA1 2 TYR A 10 ? HIS A 12 ? TYR A 10 HIS A 12 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id GLN _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 3 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id GLN _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 3 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ILE _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 11 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 11 # _pdbx_entry_details.entry_id 9CLJ _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 121 ? ? -96.46 -77.89 2 1 ASN A 122 ? ? -119.54 72.67 3 1 ASN A 193 ? ? -105.06 40.81 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 18 ? ? 0.101 'SIDE CHAIN' 2 1 ARG A 132 ? ? 0.087 'SIDE CHAIN' 3 1 ARG A 167 ? ? 0.097 'SIDE CHAIN' # _pdbx_point_symmetry.entry_id 9CLJ _pdbx_point_symmetry.Schoenflies_symbol I # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9CLJ _em_3d_fitting.method ? _em_3d_fitting.target_criteria 'Cross-correlation coefficient' _em_3d_fitting.details ;An HIV-1 CA chain from pentamers (PDB: 8CKW) was initially fit into the density by rigid body fitting. It was then mutated to match the HIV-2 sequence, with unmodeled residues being replaced before flexible fitting and refinement into the map volume. ; _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 8CKW _em_3d_fitting_list.pdb_chain_id A _em_3d_fitting_list.pdb_chain_residue_range 1-221 _em_3d_fitting_list.details 'Due to structural similarities expected between HIV-2 and HIV-1, an HIV-1 model was used for initial fitting.' _em_3d_fitting_list.chain_id A _em_3d_fitting_list.chain_residue_range 1-221 _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 8CKW _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 9CLJ _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 1.98 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 74821 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details 'The mixed buffer of storage buffer for the protein and lipid components with IP6 supplemented.' _em_buffer.pH 7 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'HIV-2 capsid protein assembled into a lattice via lipid templating.' _em_entity_assembly.details ;C-terminally hexahistidine tagged HIV-2 CA associated with a micelle decorated with NiNTA headgroups which results in the assembly of an icosahedral lattice of CA. ; _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9CLJ _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 81000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 30 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R2/1' _em_sample_support.details '15 mA discharge current.' _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9CLJ _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 298 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details 'Grids were dual-side blotted with blot force 0 for 5.5 sec before plunge freezing in liquid ethane.' # _em_experiment.entry_id 9CLJ _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 9CLJ _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry I # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 223 ? A GLY 223 2 1 Y 1 A PRO 224 ? A PRO 224 3 1 Y 1 A GLY 225 ? A GLY 225 4 1 Y 1 A GLN 226 ? A GLN 226 5 1 Y 1 A LYS 227 ? A LYS 227 6 1 Y 1 A ALA 228 ? A ALA 228 7 1 Y 1 A ARG 229 ? A ARG 229 8 1 Y 1 A LEU 230 ? A LEU 230 9 1 Y 1 A MET 231 ? A MET 231 10 1 Y 1 A GLY 232 ? A GLY 232 11 1 Y 1 A SER 233 ? A SER 233 12 1 Y 1 A SER 234 ? A SER 234 13 1 Y 1 A HIS 235 ? A HIS 235 14 1 Y 1 A HIS 236 ? A HIS 236 15 1 Y 1 A HIS 237 ? A HIS 237 16 1 Y 1 A HIS 238 ? A HIS 238 17 1 Y 1 A HIS 239 ? A HIS 239 18 1 Y 1 A HIS 240 ? A HIS 240 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 IHP C1 C N N 161 IHP C2 C N N 162 IHP C3 C N N 163 IHP C4 C N N 164 IHP C5 C N N 165 IHP C6 C N N 166 IHP O11 O N N 167 IHP P1 P N N 168 IHP O21 O N N 169 IHP O31 O N N 170 IHP O41 O N N 171 IHP O12 O N N 172 IHP P2 P N N 173 IHP O22 O N N 174 IHP O32 O N N 175 IHP O42 O N N 176 IHP O13 O N N 177 IHP P3 P N N 178 IHP O23 O N N 179 IHP O33 O N N 180 IHP O43 O N N 181 IHP O14 O N N 182 IHP P4 P N N 183 IHP O24 O N N 184 IHP O34 O N N 185 IHP O44 O N N 186 IHP O15 O N N 187 IHP P5 P N N 188 IHP O25 O N N 189 IHP O35 O N N 190 IHP O45 O N N 191 IHP O16 O N N 192 IHP P6 P N N 193 IHP O26 O N N 194 IHP O36 O N N 195 IHP O46 O N N 196 IHP H1 H N N 197 IHP H2 H N N 198 IHP H3 H N N 199 IHP H4 H N N 200 IHP H5 H N N 201 IHP H6 H N N 202 IHP H31 H N N 203 IHP H41 H N N 204 IHP H32 H N N 205 IHP H42 H N N 206 IHP H33 H N N 207 IHP H43 H N N 208 IHP H34 H N N 209 IHP H44 H N N 210 IHP H35 H N N 211 IHP H45 H N N 212 IHP H36 H N N 213 IHP H46 H N N 214 ILE N N N N 215 ILE CA C N S 216 ILE C C N N 217 ILE O O N N 218 ILE CB C N S 219 ILE CG1 C N N 220 ILE CG2 C N N 221 ILE CD1 C N N 222 ILE OXT O N N 223 ILE H H N N 224 ILE H2 H N N 225 ILE HA H N N 226 ILE HB H N N 227 ILE HG12 H N N 228 ILE HG13 H N N 229 ILE HG21 H N N 230 ILE HG22 H N N 231 ILE HG23 H N N 232 ILE HD11 H N N 233 ILE HD12 H N N 234 ILE HD13 H N N 235 ILE HXT H N N 236 LEU N N N N 237 LEU CA C N S 238 LEU C C N N 239 LEU O O N N 240 LEU CB C N N 241 LEU CG C N N 242 LEU CD1 C N N 243 LEU CD2 C N N 244 LEU OXT O N N 245 LEU H H N N 246 LEU H2 H N N 247 LEU HA H N N 248 LEU HB2 H N N 249 LEU HB3 H N N 250 LEU HG H N N 251 LEU HD11 H N N 252 LEU HD12 H N N 253 LEU HD13 H N N 254 LEU HD21 H N N 255 LEU HD22 H N N 256 LEU HD23 H N N 257 LEU HXT H N N 258 LYS N N N N 259 LYS CA C N S 260 LYS C C N N 261 LYS O O N N 262 LYS CB C N N 263 LYS CG C N N 264 LYS CD C N N 265 LYS CE C N N 266 LYS NZ N N N 267 LYS OXT O N N 268 LYS H H N N 269 LYS H2 H N N 270 LYS HA H N N 271 LYS HB2 H N N 272 LYS HB3 H N N 273 LYS HG2 H N N 274 LYS HG3 H N N 275 LYS HD2 H N N 276 LYS HD3 H N N 277 LYS HE2 H N N 278 LYS HE3 H N N 279 LYS HZ1 H N N 280 LYS HZ2 H N N 281 LYS HZ3 H N N 282 LYS HXT H N N 283 MET N N N N 284 MET CA C N S 285 MET C C N N 286 MET O O N N 287 MET CB C N N 288 MET CG C N N 289 MET SD S N N 290 MET CE C N N 291 MET OXT O N N 292 MET H H N N 293 MET H2 H N N 294 MET HA H N N 295 MET HB2 H N N 296 MET HB3 H N N 297 MET HG2 H N N 298 MET HG3 H N N 299 MET HE1 H N N 300 MET HE2 H N N 301 MET HE3 H N N 302 MET HXT H N N 303 PHE N N N N 304 PHE CA C N S 305 PHE C C N N 306 PHE O O N N 307 PHE CB C N N 308 PHE CG C Y N 309 PHE CD1 C Y N 310 PHE CD2 C Y N 311 PHE CE1 C Y N 312 PHE CE2 C Y N 313 PHE CZ C Y N 314 PHE OXT O N N 315 PHE H H N N 316 PHE H2 H N N 317 PHE HA H N N 318 PHE HB2 H N N 319 PHE HB3 H N N 320 PHE HD1 H N N 321 PHE HD2 H N N 322 PHE HE1 H N N 323 PHE HE2 H N N 324 PHE HZ H N N 325 PHE HXT H N N 326 PRO N N N N 327 PRO CA C N S 328 PRO C C N N 329 PRO O O N N 330 PRO CB C N N 331 PRO CG C N N 332 PRO CD C N N 333 PRO OXT O N N 334 PRO H H N N 335 PRO HA H N N 336 PRO HB2 H N N 337 PRO HB3 H N N 338 PRO HG2 H N N 339 PRO HG3 H N N 340 PRO HD2 H N N 341 PRO HD3 H N N 342 PRO HXT H N N 343 SER N N N N 344 SER CA C N S 345 SER C C N N 346 SER O O N N 347 SER CB C N N 348 SER OG O N N 349 SER OXT O N N 350 SER H H N N 351 SER H2 H N N 352 SER HA H N N 353 SER HB2 H N N 354 SER HB3 H N N 355 SER HG H N N 356 SER HXT H N N 357 THR N N N N 358 THR CA C N S 359 THR C C N N 360 THR O O N N 361 THR CB C N R 362 THR OG1 O N N 363 THR CG2 C N N 364 THR OXT O N N 365 THR H H N N 366 THR H2 H N N 367 THR HA H N N 368 THR HB H N N 369 THR HG1 H N N 370 THR HG21 H N N 371 THR HG22 H N N 372 THR HG23 H N N 373 THR HXT H N N 374 TRP N N N N 375 TRP CA C N S 376 TRP C C N N 377 TRP O O N N 378 TRP CB C N N 379 TRP CG C Y N 380 TRP CD1 C Y N 381 TRP CD2 C Y N 382 TRP NE1 N Y N 383 TRP CE2 C Y N 384 TRP CE3 C Y N 385 TRP CZ2 C Y N 386 TRP CZ3 C Y N 387 TRP CH2 C Y N 388 TRP OXT O N N 389 TRP H H N N 390 TRP H2 H N N 391 TRP HA H N N 392 TRP HB2 H N N 393 TRP HB3 H N N 394 TRP HD1 H N N 395 TRP HE1 H N N 396 TRP HE3 H N N 397 TRP HZ2 H N N 398 TRP HZ3 H N N 399 TRP HH2 H N N 400 TRP HXT H N N 401 TYR N N N N 402 TYR CA C N S 403 TYR C C N N 404 TYR O O N N 405 TYR CB C N N 406 TYR CG C Y N 407 TYR CD1 C Y N 408 TYR CD2 C Y N 409 TYR CE1 C Y N 410 TYR CE2 C Y N 411 TYR CZ C Y N 412 TYR OH O N N 413 TYR OXT O N N 414 TYR H H N N 415 TYR H2 H N N 416 TYR HA H N N 417 TYR HB2 H N N 418 TYR HB3 H N N 419 TYR HD1 H N N 420 TYR HD2 H N N 421 TYR HE1 H N N 422 TYR HE2 H N N 423 TYR HH H N N 424 TYR HXT H N N 425 VAL N N N N 426 VAL CA C N S 427 VAL C C N N 428 VAL O O N N 429 VAL CB C N N 430 VAL CG1 C N N 431 VAL CG2 C N N 432 VAL OXT O N N 433 VAL H H N N 434 VAL H2 H N N 435 VAL HA H N N 436 VAL HB H N N 437 VAL HG11 H N N 438 VAL HG12 H N N 439 VAL HG13 H N N 440 VAL HG21 H N N 441 VAL HG22 H N N 442 VAL HG23 H N N 443 VAL HXT H N N 444 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 IHP C1 C2 sing N N 152 IHP C1 C6 sing N N 153 IHP C1 O11 sing N N 154 IHP C1 H1 sing N N 155 IHP C2 C3 sing N N 156 IHP C2 O12 sing N N 157 IHP C2 H2 sing N N 158 IHP C3 C4 sing N N 159 IHP C3 O13 sing N N 160 IHP C3 H3 sing N N 161 IHP C4 C5 sing N N 162 IHP C4 O14 sing N N 163 IHP C4 H4 sing N N 164 IHP C5 C6 sing N N 165 IHP C5 O15 sing N N 166 IHP C5 H5 sing N N 167 IHP C6 O16 sing N N 168 IHP C6 H6 sing N N 169 IHP O11 P1 sing N N 170 IHP P1 O21 doub N N 171 IHP P1 O31 sing N N 172 IHP P1 O41 sing N N 173 IHP O31 H31 sing N N 174 IHP O41 H41 sing N N 175 IHP O12 P2 sing N N 176 IHP P2 O22 doub N N 177 IHP P2 O32 sing N N 178 IHP P2 O42 sing N N 179 IHP O32 H32 sing N N 180 IHP O42 H42 sing N N 181 IHP O13 P3 sing N N 182 IHP P3 O23 doub N N 183 IHP P3 O33 sing N N 184 IHP P3 O43 sing N N 185 IHP O33 H33 sing N N 186 IHP O43 H43 sing N N 187 IHP O14 P4 sing N N 188 IHP P4 O24 doub N N 189 IHP P4 O34 sing N N 190 IHP P4 O44 sing N N 191 IHP O34 H34 sing N N 192 IHP O44 H44 sing N N 193 IHP O15 P5 sing N N 194 IHP P5 O25 doub N N 195 IHP P5 O35 sing N N 196 IHP P5 O45 sing N N 197 IHP O35 H35 sing N N 198 IHP O45 H45 sing N N 199 IHP O16 P6 sing N N 200 IHP P6 O26 doub N N 201 IHP P6 O36 sing N N 202 IHP P6 O46 sing N N 203 IHP O36 H36 sing N N 204 IHP O46 H46 sing N N 205 ILE N CA sing N N 206 ILE N H sing N N 207 ILE N H2 sing N N 208 ILE CA C sing N N 209 ILE CA CB sing N N 210 ILE CA HA sing N N 211 ILE C O doub N N 212 ILE C OXT sing N N 213 ILE CB CG1 sing N N 214 ILE CB CG2 sing N N 215 ILE CB HB sing N N 216 ILE CG1 CD1 sing N N 217 ILE CG1 HG12 sing N N 218 ILE CG1 HG13 sing N N 219 ILE CG2 HG21 sing N N 220 ILE CG2 HG22 sing N N 221 ILE CG2 HG23 sing N N 222 ILE CD1 HD11 sing N N 223 ILE CD1 HD12 sing N N 224 ILE CD1 HD13 sing N N 225 ILE OXT HXT sing N N 226 LEU N CA sing N N 227 LEU N H sing N N 228 LEU N H2 sing N N 229 LEU CA C sing N N 230 LEU CA CB sing N N 231 LEU CA HA sing N N 232 LEU C O doub N N 233 LEU C OXT sing N N 234 LEU CB CG sing N N 235 LEU CB HB2 sing N N 236 LEU CB HB3 sing N N 237 LEU CG CD1 sing N N 238 LEU CG CD2 sing N N 239 LEU CG HG sing N N 240 LEU CD1 HD11 sing N N 241 LEU CD1 HD12 sing N N 242 LEU CD1 HD13 sing N N 243 LEU CD2 HD21 sing N N 244 LEU CD2 HD22 sing N N 245 LEU CD2 HD23 sing N N 246 LEU OXT HXT sing N N 247 LYS N CA sing N N 248 LYS N H sing N N 249 LYS N H2 sing N N 250 LYS CA C sing N N 251 LYS CA CB sing N N 252 LYS CA HA sing N N 253 LYS C O doub N N 254 LYS C OXT sing N N 255 LYS CB CG sing N N 256 LYS CB HB2 sing N N 257 LYS CB HB3 sing N N 258 LYS CG CD sing N N 259 LYS CG HG2 sing N N 260 LYS CG HG3 sing N N 261 LYS CD CE sing N N 262 LYS CD HD2 sing N N 263 LYS CD HD3 sing N N 264 LYS CE NZ sing N N 265 LYS CE HE2 sing N N 266 LYS CE HE3 sing N N 267 LYS NZ HZ1 sing N N 268 LYS NZ HZ2 sing N N 269 LYS NZ HZ3 sing N N 270 LYS OXT HXT sing N N 271 MET N CA sing N N 272 MET N H sing N N 273 MET N H2 sing N N 274 MET CA C sing N N 275 MET CA CB sing N N 276 MET CA HA sing N N 277 MET C O doub N N 278 MET C OXT sing N N 279 MET CB CG sing N N 280 MET CB HB2 sing N N 281 MET CB HB3 sing N N 282 MET CG SD sing N N 283 MET CG HG2 sing N N 284 MET CG HG3 sing N N 285 MET SD CE sing N N 286 MET CE HE1 sing N N 287 MET CE HE2 sing N N 288 MET CE HE3 sing N N 289 MET OXT HXT sing N N 290 PHE N CA sing N N 291 PHE N H sing N N 292 PHE N H2 sing N N 293 PHE CA C sing N N 294 PHE CA CB sing N N 295 PHE CA HA sing N N 296 PHE C O doub N N 297 PHE C OXT sing N N 298 PHE CB CG sing N N 299 PHE CB HB2 sing N N 300 PHE CB HB3 sing N N 301 PHE CG CD1 doub Y N 302 PHE CG CD2 sing Y N 303 PHE CD1 CE1 sing Y N 304 PHE CD1 HD1 sing N N 305 PHE CD2 CE2 doub Y N 306 PHE CD2 HD2 sing N N 307 PHE CE1 CZ doub Y N 308 PHE CE1 HE1 sing N N 309 PHE CE2 CZ sing Y N 310 PHE CE2 HE2 sing N N 311 PHE CZ HZ sing N N 312 PHE OXT HXT sing N N 313 PRO N CA sing N N 314 PRO N CD sing N N 315 PRO N H sing N N 316 PRO CA C sing N N 317 PRO CA CB sing N N 318 PRO CA HA sing N N 319 PRO C O doub N N 320 PRO C OXT sing N N 321 PRO CB CG sing N N 322 PRO CB HB2 sing N N 323 PRO CB HB3 sing N N 324 PRO CG CD sing N N 325 PRO CG HG2 sing N N 326 PRO CG HG3 sing N N 327 PRO CD HD2 sing N N 328 PRO CD HD3 sing N N 329 PRO OXT HXT sing N N 330 SER N CA sing N N 331 SER N H sing N N 332 SER N H2 sing N N 333 SER CA C sing N N 334 SER CA CB sing N N 335 SER CA HA sing N N 336 SER C O doub N N 337 SER C OXT sing N N 338 SER CB OG sing N N 339 SER CB HB2 sing N N 340 SER CB HB3 sing N N 341 SER OG HG sing N N 342 SER OXT HXT sing N N 343 THR N CA sing N N 344 THR N H sing N N 345 THR N H2 sing N N 346 THR CA C sing N N 347 THR CA CB sing N N 348 THR CA HA sing N N 349 THR C O doub N N 350 THR C OXT sing N N 351 THR CB OG1 sing N N 352 THR CB CG2 sing N N 353 THR CB HB sing N N 354 THR OG1 HG1 sing N N 355 THR CG2 HG21 sing N N 356 THR CG2 HG22 sing N N 357 THR CG2 HG23 sing N N 358 THR OXT HXT sing N N 359 TRP N CA sing N N 360 TRP N H sing N N 361 TRP N H2 sing N N 362 TRP CA C sing N N 363 TRP CA CB sing N N 364 TRP CA HA sing N N 365 TRP C O doub N N 366 TRP C OXT sing N N 367 TRP CB CG sing N N 368 TRP CB HB2 sing N N 369 TRP CB HB3 sing N N 370 TRP CG CD1 doub Y N 371 TRP CG CD2 sing Y N 372 TRP CD1 NE1 sing Y N 373 TRP CD1 HD1 sing N N 374 TRP CD2 CE2 doub Y N 375 TRP CD2 CE3 sing Y N 376 TRP NE1 CE2 sing Y N 377 TRP NE1 HE1 sing N N 378 TRP CE2 CZ2 sing Y N 379 TRP CE3 CZ3 doub Y N 380 TRP CE3 HE3 sing N N 381 TRP CZ2 CH2 doub Y N 382 TRP CZ2 HZ2 sing N N 383 TRP CZ3 CH2 sing Y N 384 TRP CZ3 HZ3 sing N N 385 TRP CH2 HH2 sing N N 386 TRP OXT HXT sing N N 387 TYR N CA sing N N 388 TYR N H sing N N 389 TYR N H2 sing N N 390 TYR CA C sing N N 391 TYR CA CB sing N N 392 TYR CA HA sing N N 393 TYR C O doub N N 394 TYR C OXT sing N N 395 TYR CB CG sing N N 396 TYR CB HB2 sing N N 397 TYR CB HB3 sing N N 398 TYR CG CD1 doub Y N 399 TYR CG CD2 sing Y N 400 TYR CD1 CE1 sing Y N 401 TYR CD1 HD1 sing N N 402 TYR CD2 CE2 doub Y N 403 TYR CD2 HD2 sing N N 404 TYR CE1 CZ doub Y N 405 TYR CE1 HE1 sing N N 406 TYR CE2 CZ sing Y N 407 TYR CE2 HE2 sing N N 408 TYR CZ OH sing N N 409 TYR OH HH sing N N 410 TYR OXT HXT sing N N 411 VAL N CA sing N N 412 VAL N H sing N N 413 VAL N H2 sing N N 414 VAL CA C sing N N 415 VAL CA CB sing N N 416 VAL CA HA sing N N 417 VAL C O doub N N 418 VAL C OXT sing N N 419 VAL CB CG1 sing N N 420 VAL CB CG2 sing N N 421 VAL CB HB sing N N 422 VAL CG1 HG11 sing N N 423 VAL CG1 HG12 sing N N 424 VAL CG1 HG13 sing N N 425 VAL CG2 HG21 sing N N 426 VAL CG2 HG22 sing N N 427 VAL CG2 HG23 sing N N 428 VAL OXT HXT sing N N 429 # _em_admin.current_status REL _em_admin.deposition_date 2024-07-11 _em_admin.deposition_site RCSB _em_admin.entry_id 9CLJ _em_admin.last_update 2025-03-05 _em_admin.map_release_date 2025-03-05 _em_admin.title 'HIV-2 CA T=1 Icosahedron; assembled via lipid templating' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 20 mM ? 1 HEPES 1 250 mM NaCl 2 'Sodium chloride' 1 0.1 mM ? 3 TCEP 1 4 mM ? 4 IP6 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units KILODALTONS/NANOMETER _em_entity_assembly_molwt.value 26.9 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 11709 _em_entity_assembly_naturalsource.organism 'Human immunodeficiency virus 2' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain GL-AN _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 15 _em_imaging_optics.energyfilter_name 'GIF Quantum LS' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 690629 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC ? 'IMAGE ACQUISITION' 'Collected at Brookhaven National Laboratory' 2 ? ? 1 EPU ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot ? OTHER ? 8 ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? Coot ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? cryoSPARC ? CLASSIFICATION ? 12 1 ? ? cryoSPARC ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? # _em_specimen.concentration 10.7 _em_specimen.details ;Sample was prepared with 400 uM HIV-2 CA-6xHis protein, 5.9 mM lipid mix (described in publication), and 4 mM IP6. Sample was well-distributed on the grid, mostly monodisperse. Perhaps slightly more particles on carbon versus in the hole. ; _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' T32GM008283 1 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' U54AI170791 2 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' P50AI150481 3 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8CKW _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9CLJ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_