HEADER VIRAL PROTEIN 11-JUL-24 9CLJ TITLE HIV-2 CA T=1 ICOSAHEDRON; ASSEMBLED VIA LIPID TEMPLATING COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN P24; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CA; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: FULL LENGTH HIV-2 GL-AN CAPSID PROTEIN WITH A C- COMPND 7 TERMINAL GLY-SER-SER LINKER TO A HEXAHISTIDINE TAG FOLLOWING COMPND 8 PROTEOLYTIC PROCESSING OF N-TERMINAL MET. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 2; SOURCE 3 ORGANISM_TAXID: 11709; SOURCE 4 STRAIN: GL-AN; SOURCE 5 GENE: GAG-POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HIV-2, CAPSID, IP6, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR M.COOK,C.FRENIERE,Y.XIONG REVDAT 1 05-MAR-25 9CLJ 0 JRNL AUTH M.COOK,C.FRENIERE,C.WU,F.LOZANO,Y.XIONG JRNL TITL STRUCTURAL INSIGHTS INTO HIV-2 CA LATTICE FORMATION AND JRNL TITL 2 FG-POCKET BINDING REVEALED BY SINGLE-PARTICLE CRYO-EM. JRNL REF CELL REP V. 44 15245 2025 JRNL REFN ESSN 2211-1247 JRNL PMID 39864060 JRNL DOI 10.1016/J.CELREP.2025.115245 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, EPU, CRYOSPARC, COOT, COOT, REMARK 3 CRYOSPARC, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 8CKW REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : CROSS-CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : AN HIV-1 CA CHAIN FROM PENTAMERS (PDB: 8CKW) REMARK 3 WAS INITIALLY FIT INTO THE DENSITY BY RIGID BODY FITTING. IT WAS REMARK 3 THEN MUTATED TO MATCH THE HIV-2 SEQUENCE, WITH UNMODELED REMARK 3 RESIDUES BEING REPLACED BEFORE FLEXIBLE FITTING AND REFINEMENT REMARK 3 INTO THE MAP VOLUME. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 1.980 REMARK 3 NUMBER OF PARTICLES : 74821 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9CLJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1000285822. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HIV-2 CAPSID PROTEIN ASSEMBLED REMARK 245 INTO A LATTICE VIA LIPID REMARK 245 TEMPLATING. REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 10.70 REMARK 245 SAMPLE SUPPORT DETAILS : 15 MA DISCHARGE CURRENT. REMARK 245 SAMPLE VITRIFICATION DETAILS : GRIDS WERE DUAL-SIDE BLOTTED REMARK 245 WITH BLOT FORCE 0 FOR 5.5 SEC REMARK 245 BEFORE PLUNGE FREEZING IN REMARK 245 LIQUID ETHANE. REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : C-TERMINALLY HEXAHISTIDINE REMARK 245 TAGGED HIV-2 CA ASSOCIATED WITH A MICELLE DECORATED WITH NINTA REMARK 245 HEADGROUPS WHICH RESULTS IN THE ASSEMBLY OF AN ICOSAHEDRAL REMARK 245 LATTICE OF CA. REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 81000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.809017 0.499998 0.309020 -110.89032 REMARK 350 BIOMT2 2 -0.500002 0.309017 0.809016 68.53440 REMARK 350 BIOMT3 2 0.309014 -0.809018 0.500000 179.42478 REMARK 350 BIOMT1 3 0.500000 0.309012 0.809019 -110.88957 REMARK 350 BIOMT2 3 -0.309022 -0.809017 0.499997 290.31554 REMARK 350 BIOMT3 3 0.809015 -0.500003 -0.309017 179.42494 REMARK 350 BIOMT1 4 0.500000 -0.309022 0.809015 0.00123 REMARK 350 BIOMT2 4 0.309012 -0.809017 -0.500003 358.84944 REMARK 350 BIOMT3 4 0.809019 0.499997 -0.309017 0.00026 REMARK 350 BIOMT1 5 0.809017 -0.500002 0.309014 68.53475 REMARK 350 BIOMT2 5 0.499998 0.309017 -0.809018 179.42456 REMARK 350 BIOMT3 5 0.309020 0.809016 0.500000 -110.89045 REMARK 350 BIOMT1 6 1.000000 -0.000008 0.000000 0.00142 REMARK 350 BIOMT2 6 -0.000008 -1.000000 0.000000 358.84934 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 358.84800 REMARK 350 BIOMT1 7 0.809021 0.499996 0.309014 -110.88947 REMARK 350 BIOMT2 7 0.499996 -0.309021 -0.809018 290.31580 REMARK 350 BIOMT3 7 -0.309014 0.809018 -0.500000 179.42324 REMARK 350 BIOMT1 8 0.500002 0.309018 0.809015 -110.89042 REMARK 350 BIOMT2 8 0.309018 0.809015 -0.500003 68.53465 REMARK 350 BIOMT3 8 -0.809015 0.500003 0.309017 179.42308 REMARK 350 BIOMT1 9 0.499998 -0.309016 0.809019 -0.00013 REMARK 350 BIOMT2 9 -0.309016 0.809019 0.499997 -0.00010 REMARK 350 BIOMT3 9 -0.809019 -0.499997 0.309017 358.84774 REMARK 350 BIOMT1 10 0.809013 -0.500004 0.309020 68.53480 REMARK 350 BIOMT2 10 -0.500004 -0.309013 0.809016 179.42425 REMARK 350 BIOMT3 10 -0.309020 -0.809016 -0.500000 469.73844 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 358.84793 REMARK 350 BIOMT2 11 0.000000 -1.000000 0.000000 358.84795 REMARK 350 BIOMT3 11 0.000000 0.000000 1.000000 -0.00003 REMARK 350 BIOMT1 12 -0.809017 -0.499998 -0.309020 469.73828 REMARK 350 BIOMT2 12 0.500002 -0.309017 -0.809016 290.31356 REMARK 350 BIOMT3 12 0.309014 -0.809018 0.500000 179.42473 REMARK 350 BIOMT1 13 -0.500000 -0.309012 -0.809019 469.73752 REMARK 350 BIOMT2 13 0.309022 0.809017 -0.499997 68.53241 REMARK 350 BIOMT3 13 0.809015 -0.500003 -0.309017 179.42488 REMARK 350 BIOMT1 14 -0.500000 0.309022 -0.809015 358.84670 REMARK 350 BIOMT2 14 -0.309012 0.809017 0.500003 -0.00148 REMARK 350 BIOMT3 14 0.809019 0.499997 -0.309017 0.00022 REMARK 350 BIOMT1 15 -0.809017 0.500002 -0.309014 290.31316 REMARK 350 BIOMT2 15 -0.499998 -0.309017 0.809018 179.42339 REMARK 350 BIOMT3 15 0.309020 0.809016 0.500000 -110.89047 REMARK 350 BIOMT1 16 -1.000000 0.000008 0.000000 358.84657 REMARK 350 BIOMT2 16 0.000008 1.000000 0.000000 -0.00139 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 358.84797 REMARK 350 BIOMT1 17 -0.809021 -0.499996 -0.309014 469.73743 REMARK 350 BIOMT2 17 -0.499996 0.309021 0.809018 68.53215 REMARK 350 BIOMT3 17 -0.309014 0.809018 -0.500000 179.42319 REMARK 350 BIOMT1 18 -0.500003 -0.309018 -0.809015 469.73838 REMARK 350 BIOMT2 18 -0.309018 -0.809015 0.500003 290.31330 REMARK 350 BIOMT3 18 -0.809015 0.500003 0.309017 179.42303 REMARK 350 BIOMT1 19 -0.499998 0.309016 -0.809019 358.84812 REMARK 350 BIOMT2 19 0.309016 -0.809019 -0.499997 358.84805 REMARK 350 BIOMT3 19 -0.809019 -0.499997 0.309017 358.84771 REMARK 350 BIOMT1 20 -0.809013 0.500004 -0.309020 290.31321 REMARK 350 BIOMT2 20 0.500004 0.309013 -0.809016 179.42371 REMARK 350 BIOMT3 20 -0.309020 -0.809016 -0.500000 469.73842 REMARK 350 BIOMT1 21 -0.000004 0.000000 1.000000 0.00069 REMARK 350 BIOMT2 21 -1.000000 0.000004 -0.000004 358.84794 REMARK 350 BIOMT3 21 -0.000004 -1.000000 0.000000 358.84867 REMARK 350 BIOMT1 22 0.309011 -0.809020 0.499999 179.42588 REMARK 350 BIOMT2 22 -0.809020 -0.499994 -0.309019 469.73785 REMARK 350 BIOMT3 22 0.499999 -0.309019 -0.809017 290.31469 REMARK 350 BIOMT1 23 0.809013 -0.500004 -0.309020 179.42601 REMARK 350 BIOMT2 23 -0.500004 -0.309013 -0.809016 469.73795 REMARK 350 BIOMT3 23 0.309020 0.809016 -0.500000 68.53354 REMARK 350 BIOMT1 24 0.809017 0.499998 -0.309020 0.00091 REMARK 350 BIOMT2 24 -0.500002 0.309017 -0.809016 358.84810 REMARK 350 BIOMT3 24 -0.309014 0.809018 0.500000 -0.00077 REMARK 350 BIOMT1 25 0.309017 0.809018 0.499999 -110.89004 REMARK 350 BIOMT2 25 -0.809016 0.500000 -0.309019 290.31430 REMARK 350 BIOMT3 25 -0.500001 -0.309015 0.809017 179.42385 REMARK 350 BIOMT1 26 -0.000004 0.000000 -1.000000 358.84866 REMARK 350 BIOMT2 26 -1.000000 0.000004 0.000004 358.84655 REMARK 350 BIOMT3 26 0.000004 1.000000 0.000000 -0.00070 REMARK 350 BIOMT1 27 -0.309017 0.809016 -0.500001 179.42432 REMARK 350 BIOMT2 27 -0.809018 -0.500000 -0.309015 469.73785 REMARK 350 BIOMT3 27 -0.499999 0.309019 0.809017 68.53328 REMARK 350 BIOMT1 28 -0.809017 0.500002 0.309014 179.42418 REMARK 350 BIOMT2 28 -0.499998 -0.309017 -0.809018 469.73795 REMARK 350 BIOMT3 28 -0.309020 -0.809016 0.500000 290.31443 REMARK 350 BIOMT1 29 -0.809021 -0.499996 0.309014 358.84843 REMARK 350 BIOMT2 29 -0.499996 0.309021 -0.809018 358.84671 REMARK 350 BIOMT3 29 0.309014 -0.809018 -0.500000 358.84874 REMARK 350 BIOMT1 30 -0.309023 -0.809014 -0.500001 469.73885 REMARK 350 BIOMT2 30 -0.809014 0.500006 -0.309015 290.31206 REMARK 350 BIOMT3 30 0.500001 0.309015 -0.809017 179.42412 REMARK 350 BIOMT1 31 0.000004 0.000000 1.000000 -0.00073 REMARK 350 BIOMT2 31 1.000000 -0.000004 -0.000004 0.00140 REMARK 350 BIOMT3 31 0.000004 1.000000 0.000000 -0.00067 REMARK 350 BIOMT1 32 0.309017 -0.809016 0.500001 179.42362 REMARK 350 BIOMT2 32 0.809018 0.500000 0.309015 -110.88990 REMARK 350 BIOMT3 32 -0.499999 0.309019 0.809017 68.53328 REMARK 350 BIOMT1 33 0.809017 -0.500002 -0.309014 179.42379 REMARK 350 BIOMT2 33 0.499998 0.309017 0.809018 -110.89000 REMARK 350 BIOMT3 33 -0.309020 -0.809016 0.500000 290.31443 REMARK 350 BIOMT1 34 0.809021 0.499996 -0.309014 -0.00044 REMARK 350 BIOMT2 34 0.499996 -0.309021 0.809018 0.00124 REMARK 350 BIOMT3 34 0.309014 -0.809018 -0.500000 358.84877 REMARK 350 BIOMT1 35 0.309023 0.809014 0.500001 -110.89090 REMARK 350 BIOMT2 35 0.809014 -0.500006 0.309015 68.53589 REMARK 350 BIOMT3 35 0.500001 0.309015 -0.809017 179.42417 REMARK 350 BIOMT1 36 0.000004 0.000000 -1.000000 358.84730 REMARK 350 BIOMT2 36 1.000000 -0.000004 0.000004 0.00001 REMARK 350 BIOMT3 36 -0.000004 -1.000000 0.000000 358.84864 REMARK 350 BIOMT1 37 -0.309011 0.809020 -0.499999 179.42210 REMARK 350 BIOMT2 37 0.809020 0.499994 0.309019 -110.88990 REMARK 350 BIOMT3 37 0.499999 -0.309019 -0.809017 290.31469 REMARK 350 BIOMT1 38 -0.809013 0.500004 0.309020 179.42192 REMARK 350 BIOMT2 38 0.500004 0.309013 0.809016 -110.89000 REMARK 350 BIOMT3 38 0.309020 0.809016 -0.500000 68.53354 REMARK 350 BIOMT1 39 -0.809017 -0.499998 0.309020 358.84701 REMARK 350 BIOMT2 39 0.500002 -0.309017 0.809016 -0.00014 REMARK 350 BIOMT3 39 -0.309014 0.809018 0.500000 -0.00080 REMARK 350 BIOMT1 40 -0.309017 -0.809018 -0.499999 469.73800 REMARK 350 BIOMT2 40 0.809016 -0.500000 0.309019 68.53365 REMARK 350 BIOMT3 40 -0.500001 -0.309015 0.809017 179.42380 REMARK 350 BIOMT1 41 -0.000004 -1.000000 -0.000004 358.84933 REMARK 350 BIOMT2 41 0.000000 0.000004 -1.000000 358.84728 REMARK 350 BIOMT3 41 1.000000 -0.000004 0.000000 0.00070 REMARK 350 BIOMT1 42 0.499998 -0.309016 -0.809019 290.31466 REMARK 350 BIOMT2 42 -0.309016 0.809019 -0.499997 179.42278 REMARK 350 BIOMT3 42 0.809019 0.499997 0.309017 -110.88990 REMARK 350 BIOMT1 43 0.309017 0.809018 -0.499999 68.53351 REMARK 350 BIOMT2 43 -0.809016 0.500000 0.309019 179.42348 REMARK 350 BIOMT3 43 0.500001 0.309015 0.809017 -110.88998 REMARK 350 BIOMT1 44 -0.309017 0.809016 0.500001 -0.00011 REMARK 350 BIOMT2 44 -0.809018 -0.500000 0.309015 358.84841 REMARK 350 BIOMT3 44 0.499999 -0.309019 0.809017 0.00057 REMARK 350 BIOMT1 45 -0.500002 -0.309018 0.809015 179.42493 REMARK 350 BIOMT2 45 -0.309018 -0.809015 -0.500003 469.73842 REMARK 350 BIOMT3 45 0.809015 -0.500003 0.309017 68.53478 REMARK 350 BIOMT1 46 0.000004 1.000000 0.000004 -0.00140 REMARK 350 BIOMT2 46 0.000000 -0.000004 1.000000 0.00067 REMARK 350 BIOMT3 46 1.000000 -0.000004 0.000000 0.00073 REMARK 350 BIOMT1 47 -0.499997 0.309016 0.809019 68.53325 REMARK 350 BIOMT2 47 0.309016 -0.809019 0.499997 179.42517 REMARK 350 BIOMT3 47 0.809019 0.499997 0.309017 -110.88988 REMARK 350 BIOMT1 48 -0.309017 -0.809018 0.499999 290.31440 REMARK 350 BIOMT2 48 0.809016 -0.500000 -0.309019 179.42447 REMARK 350 BIOMT3 48 0.500001 0.309015 0.809017 -110.89000 REMARK 350 BIOMT1 49 0.309017 -0.809016 -0.500001 358.84804 REMARK 350 BIOMT2 49 0.809018 0.500000 -0.309015 -0.00046 REMARK 350 BIOMT3 49 0.499999 -0.309019 0.809017 0.00054 REMARK 350 BIOMT1 50 0.500002 0.309018 -0.809015 179.42301 REMARK 350 BIOMT2 50 0.309018 0.809015 0.500003 -110.89047 REMARK 350 BIOMT3 50 0.809015 -0.500003 0.309017 68.53478 REMARK 350 BIOMT1 51 0.000004 1.000000 -0.000004 0.00002 REMARK 350 BIOMT2 51 0.000000 -0.000004 -1.000000 358.84867 REMARK 350 BIOMT3 51 -1.000000 0.000004 0.000000 358.84727 REMARK 350 BIOMT1 52 -0.500000 0.309022 0.809015 68.53330 REMARK 350 BIOMT2 52 -0.309012 0.809017 -0.500003 179.42364 REMARK 350 BIOMT3 52 -0.809019 -0.499997 -0.309017 469.73787 REMARK 350 BIOMT1 53 -0.309023 -0.809014 0.500001 290.31445 REMARK 350 BIOMT2 53 -0.809014 0.500006 0.309015 179.42262 REMARK 350 BIOMT3 53 -0.500001 -0.309015 -0.809017 469.73795 REMARK 350 BIOMT1 54 0.309011 -0.809020 -0.499999 358.84946 REMARK 350 BIOMT2 54 -0.809020 -0.499994 0.309019 358.84703 REMARK 350 BIOMT3 54 -0.499999 0.309019 -0.809017 358.84740 REMARK 350 BIOMT1 55 0.500000 0.309012 -0.809019 179.42527 REMARK 350 BIOMT2 55 -0.309022 -0.809017 -0.499997 469.73842 REMARK 350 BIOMT3 55 -0.809015 0.500003 -0.309017 290.31319 REMARK 350 BIOMT1 56 -0.000004 -1.000000 0.000004 358.84797 REMARK 350 BIOMT2 56 0.000000 0.000004 1.000000 -0.00072 REMARK 350 BIOMT3 56 -1.000000 0.000004 0.000000 358.84724 REMARK 350 BIOMT1 57 0.500000 -0.309022 -0.809015 290.31471 REMARK 350 BIOMT2 57 0.309012 -0.809017 0.500003 179.42432 REMARK 350 BIOMT3 57 -0.809019 -0.499997 -0.309017 469.73785 REMARK 350 BIOMT1 58 0.309023 0.809014 -0.500001 68.53356 REMARK 350 BIOMT2 58 0.809014 -0.500006 -0.309015 179.42533 REMARK 350 BIOMT3 58 -0.500001 -0.309015 -0.809017 469.73797 REMARK 350 BIOMT1 59 -0.309011 0.809020 0.499999 -0.00147 REMARK 350 BIOMT2 59 0.809020 0.499994 -0.309019 0.00093 REMARK 350 BIOMT3 59 -0.499999 0.309019 -0.809017 358.84743 REMARK 350 BIOMT1 60 -0.500000 -0.309012 0.809019 179.42271 REMARK 350 BIOMT2 60 0.309022 0.809017 0.499997 -110.89047 REMARK 350 BIOMT3 60 -0.809015 0.500003 -0.309017 290.31319 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 223 REMARK 465 PRO A 224 REMARK 465 GLY A 225 REMARK 465 GLN A 226 REMARK 465 LYS A 227 REMARK 465 ALA A 228 REMARK 465 ARG A 229 REMARK 465 LEU A 230 REMARK 465 MET A 231 REMARK 465 GLY A 232 REMARK 465 SER A 233 REMARK 465 SER A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 465 HIS A 237 REMARK 465 HIS A 238 REMARK 465 HIS A 239 REMARK 465 HIS A 240 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 121 -77.89 -96.46 REMARK 500 ASN A 122 72.67 -119.54 REMARK 500 ASN A 193 40.81 -105.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 18 0.10 SIDE CHAIN REMARK 500 ARG A 132 0.09 SIDE CHAIN REMARK 500 ARG A 167 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-45676 RELATED DB: EMDB REMARK 900 HIV-2 CA T=1 ICOSAHEDRON; ASSEMBLED VIA LIPID TEMPLATING DBREF 9CLJ A 1 231 UNP P18042 POL_HV2G1 136 366 SEQADV 9CLJ GLY A 232 UNP P18042 EXPRESSION TAG SEQADV 9CLJ SER A 233 UNP P18042 EXPRESSION TAG SEQADV 9CLJ SER A 234 UNP P18042 EXPRESSION TAG SEQADV 9CLJ HIS A 235 UNP P18042 EXPRESSION TAG SEQADV 9CLJ HIS A 236 UNP P18042 EXPRESSION TAG SEQADV 9CLJ HIS A 237 UNP P18042 EXPRESSION TAG SEQADV 9CLJ HIS A 238 UNP P18042 EXPRESSION TAG SEQADV 9CLJ HIS A 239 UNP P18042 EXPRESSION TAG SEQADV 9CLJ HIS A 240 UNP P18042 EXPRESSION TAG SEQRES 1 A 240 PRO VAL GLN GLN THR GLY GLY GLY ASN TYR ILE HIS VAL SEQRES 2 A 240 PRO LEU SER PRO ARG THR LEU ASN ALA TRP VAL LYS LEU SEQRES 3 A 240 VAL GLU ASP LYS LYS PHE GLY ALA GLU VAL VAL PRO GLY SEQRES 4 A 240 PHE GLN ALA LEU SER GLU GLY CYS THR PRO TYR ASP ILE SEQRES 5 A 240 ASN GLN MET LEU ASN CYS VAL GLY ASP HIS GLN ALA ALA SEQRES 6 A 240 MET GLN ILE ILE ARG GLU ILE ILE ASN ASP GLU ALA ALA SEQRES 7 A 240 ASP TRP ASP ALA GLN HIS PRO ILE PRO GLY PRO LEU PRO SEQRES 8 A 240 ALA GLY GLN LEU ARG ASP PRO ARG GLY SER ASP ILE ALA SEQRES 9 A 240 GLY THR THR SER THR VAL GLU GLU GLN ILE GLN TRP MET SEQRES 10 A 240 TYR ARG PRO GLN ASN PRO VAL PRO VAL GLY ASN ILE TYR SEQRES 11 A 240 ARG ARG TRP ILE GLN ILE GLY LEU GLN LYS CYS VAL ARG SEQRES 12 A 240 MET TYR ASN PRO THR ASN ILE LEU ASP VAL LYS GLN GLY SEQRES 13 A 240 PRO LYS GLU PRO PHE GLN SER TYR VAL ASP ARG PHE TYR SEQRES 14 A 240 LYS SER LEU ARG ALA GLU GLN THR ASP PRO ALA VAL LYS SEQRES 15 A 240 ASN TRP MET THR GLN THR LEU LEU ILE GLN ASN ALA ASN SEQRES 16 A 240 PRO ASP CYS LYS LEU VAL LEU LYS GLY LEU GLY MET ASN SEQRES 17 A 240 PRO THR LEU GLU GLU MET LEU THR ALA CYS GLN GLY VAL SEQRES 18 A 240 GLY GLY PRO GLY GLN LYS ALA ARG LEU MET GLY SER SER SEQRES 19 A 240 HIS HIS HIS HIS HIS HIS HET IHP A 301 36 HET IHP A 302 36 HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 2 IHP 2(C6 H18 O24 P6) FORMUL 4 HOH *130(H2 O) HELIX 1 AA1 SER A 16 LYS A 30 1 15 HELIX 2 AA2 GLU A 35 SER A 44 1 10 HELIX 3 AA3 THR A 48 VAL A 59 1 12 HELIX 4 AA4 HIS A 62 HIS A 84 1 23 HELIX 5 AA5 ARG A 99 GLY A 105 1 7 HELIX 6 AA6 THR A 109 TYR A 118 1 10 HELIX 7 AA7 PRO A 125 ASN A 146 1 22 HELIX 8 AA8 PRO A 160 GLU A 175 1 16 HELIX 9 AA9 ASP A 178 THR A 188 1 11 HELIX 10 AB1 THR A 188 ASN A 193 1 6 HELIX 11 AB2 ASN A 195 GLY A 206 1 12 HELIX 12 AB3 THR A 210 GLN A 219 1 10 SHEET 1 AA1 2 VAL A 2 GLN A 4 0 SHEET 2 AA1 2 TYR A 10 HIS A 12 -1 O ILE A 11 N GLN A 3 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000