HEADER OXYGEN BINDING 11-JUL-24 9CLO TITLE DOSP R97A WITH C-DI-GMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXYGEN SENSOR PROTEIN DOSP; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DIRECT OXYGEN-SENSING PHOSPHODIESTERASE,DIRECT OXYGEN SENSOR COMPND 5 PROTEIN,EC DOS,HEME-REGULATED CYCLIC DI-GMP PHOSPHODIESTERASE; COMPND 6 EC: 3.1.4.52; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: DOSP, DOS, PDEO, YDDU, B1489, JW1484; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEME, DOSP, PHOSPHODIESTERASE, C-DI-GMP, OXYGEN BINDING EXPDTA ELECTRON MICROSCOPY AUTHOR P.KUMAR,D.L.KOBER REVDAT 3 14-MAY-25 9CLO 1 REMARK REVDAT 2 27-NOV-24 9CLO 1 JRNL REVDAT 1 20-NOV-24 9CLO 0 JRNL AUTH W.WU,P.KUMAR,C.A.BRAUTIGAM,S.C.TSO,H.R.BANIASADI,D.L.KOBER, JRNL AUTH 2 M.A.GILLES-GONZALEZ JRNL TITL STRUCTURES OF THE MULTI-DOMAIN OXYGEN SENSOR DOSP: REMOTE JRNL TITL 2 CONTROL OF A C-DI-GMP PHOSPHODIESTERASE BY A REGULATORY PAS JRNL TITL 3 DOMAIN. JRNL REF NAT COMMUN V. 15 9653 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 39511182 JRNL DOI 10.1038/S41467-024-53942-7 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX, CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.100 REMARK 3 NUMBER OF PARTICLES : 186761 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9CLO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1000285861. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : DIMER OF DOSP REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 544 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 77 -38.96 -150.52 REMARK 500 PRO A 196 -173.46 -66.93 REMARK 500 PHE A 198 107.36 -56.94 REMARK 500 SER A 276 72.76 59.47 REMARK 500 PRO A 388 0.84 -68.29 REMARK 500 LYS A 511 -62.48 -120.50 REMARK 500 ASN A 512 160.77 178.47 REMARK 500 ASN A 530 59.07 -96.85 REMARK 500 SER A 539 76.57 53.96 REMARK 500 PRO A 540 -4.24 -54.74 REMARK 500 ILE A 637 74.94 41.71 REMARK 500 ASN A 652 49.50 -87.84 REMARK 500 ASP A 668 142.44 -38.74 REMARK 500 ASP A 706 162.99 65.55 REMARK 500 PRO B 189 44.07 -86.53 REMARK 500 GLN B 217 148.98 -170.97 REMARK 500 GLU B 296 60.43 60.27 REMARK 500 GLN B 333 -166.77 -78.80 REMARK 500 PRO B 388 42.82 -83.27 REMARK 500 TYR B 507 119.36 -160.46 REMARK 500 SER B 539 147.26 73.29 REMARK 500 ALA B 541 -14.62 73.46 REMARK 500 ILE B 637 75.13 42.12 REMARK 500 ASP B 668 143.58 -39.80 REMARK 500 ASP B 706 167.55 64.43 REMARK 500 ASN B 756 64.20 60.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 903 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 584 OE2 REMARK 620 2 C2E A 902 O2P 126.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 904 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 705 OD2 REMARK 620 2 GLU A 762 OE1 84.8 REMARK 620 3 C2E A 902 O1P 118.2 95.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 903 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 584 OE2 REMARK 620 2 ASN B 643 OD1 90.4 REMARK 620 3 C2E B 901 O2P 95.1 100.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 904 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 705 OD2 REMARK 620 2 ASP B 728 OD1 107.5 REMARK 620 3 C2E B 901 O1P 91.5 123.4 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-45670 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-45667 RELATED DB: EMDB REMARK 900 C-TERMINAL MAP REMARK 900 RELATED ID: EMD-45669 RELATED DB: EMDB REMARK 900 N-TERMINAL MAP REMARK 900 RELATED ID: EMD-45727 RELATED DB: EMDB REMARK 900 DOSP R97A WITH C-DI-GMP DBREF 9CLO A 20 806 UNP P76129 DOSP_ECOLI 12 798 DBREF 9CLO B 20 806 UNP P76129 DOSP_ECOLI 12 798 SEQADV 9CLO ALA A 97 UNP P76129 ARG 89 ENGINEERED MUTATION SEQADV 9CLO THR A 195 UNP P76129 ILE 187 CONFLICT SEQADV 9CLO ALA B 97 UNP P76129 ARG 89 ENGINEERED MUTATION SEQADV 9CLO THR B 195 UNP P76129 ILE 187 CONFLICT SEQRES 1 A 787 GLY ILE PHE PHE PRO ALA LEU GLU GLN ASN MET MET GLY SEQRES 2 A 787 ALA VAL LEU ILE ASN GLU ASN ASP GLU VAL MET PHE PHE SEQRES 3 A 787 ASN PRO ALA ALA GLU LYS LEU TRP GLY TYR LYS ARG GLU SEQRES 4 A 787 GLU VAL ILE GLY ASN ASN ILE ASP MET LEU ILE PRO ARG SEQRES 5 A 787 ASP LEU ARG PRO ALA HIS PRO GLU TYR ILE ARG HIS ASN SEQRES 6 A 787 ARG GLU GLY GLY LYS ALA ARG VAL GLU GLY MET SER ALA SEQRES 7 A 787 GLU LEU GLN LEU GLU LYS LYS ASP GLY SER LYS ILE TRP SEQRES 8 A 787 THR ARG PHE ALA LEU SER LYS VAL SER ALA GLU GLY LYS SEQRES 9 A 787 VAL TYR TYR LEU ALA LEU VAL ARG ASP ALA SER VAL GLU SEQRES 10 A 787 MET ALA GLN LYS GLU GLN THR ARG GLN LEU ILE ILE ALA SEQRES 11 A 787 VAL ASP HIS LEU ASP ARG PRO VAL ILE VAL LEU ASP PRO SEQRES 12 A 787 GLU ARG HIS ILE VAL GLN CYS ASN ARG ALA PHE THR GLU SEQRES 13 A 787 MET PHE GLY TYR CYS ILE SER GLU ALA SER GLY MET GLN SEQRES 14 A 787 PRO ASP THR LEU LEU ASN THR PRO GLU PHE PRO ALA ASP SEQRES 15 A 787 ASN ARG ILE ARG LEU GLN GLN LEU LEU TRP LYS THR ALA SEQRES 16 A 787 ARG ASP GLN ASP GLU PHE LEU LEU LEU THR ARG THR GLY SEQRES 17 A 787 GLU LYS ILE TRP ILE LYS ALA SER ILE SER PRO VAL TYR SEQRES 18 A 787 ASP VAL LEU ALA HIS LEU GLN ASN LEU VAL MET THR PHE SEQRES 19 A 787 SER ASP ILE THR GLU GLU ARG GLN ILE ARG GLN LEU GLU SEQRES 20 A 787 GLY ASN ILE LEU ALA ALA MET CYS SER SER PRO PRO PHE SEQRES 21 A 787 HIS GLU MET GLY GLU ILE ILE CYS ARG ASN ILE GLU SER SEQRES 22 A 787 VAL LEU ASN GLU SER HIS VAL SER LEU PHE ALA LEU ARG SEQRES 23 A 787 ASN GLY MET PRO ILE HIS TRP ALA SER SER SER HIS GLY SEQRES 24 A 787 ALA GLU ILE GLN ASN ALA GLN SER TRP SER ALA THR ILE SEQRES 25 A 787 ARG GLN ARG ASP GLY ALA PRO ALA GLY ILE LEU GLN ILE SEQRES 26 A 787 LYS THR SER SER GLY ALA GLU THR SER ALA PHE ILE GLU SEQRES 27 A 787 ARG VAL ALA ASP ILE SER GLN HIS MET ALA ALA LEU ALA SEQRES 28 A 787 LEU GLU GLN GLU LYS SER ARG GLN HIS ILE GLU GLN LEU SEQRES 29 A 787 ILE GLN PHE ASP PRO MET THR GLY LEU PRO ASN ARG ASN SEQRES 30 A 787 ASN LEU HIS ASN TYR LEU ASP ASP LEU VAL ASP LYS ALA SEQRES 31 A 787 VAL SER PRO VAL VAL TYR LEU ILE GLY VAL ASP HIS ILE SEQRES 32 A 787 GLN ASP VAL ILE ASP SER LEU GLY TYR ALA TRP ALA ASP SEQRES 33 A 787 GLN ALA LEU LEU GLU VAL VAL ASN ARG PHE ARG GLU LYS SEQRES 34 A 787 LEU LYS PRO ASP GLN TYR LEU CYS ARG ILE GLU GLY THR SEQRES 35 A 787 GLN PHE VAL LEU VAL SER LEU GLU ASN ASP VAL SER ASN SEQRES 36 A 787 ILE THR GLN ILE ALA ASP GLU LEU ARG ASN VAL VAL SER SEQRES 37 A 787 LYS PRO ILE MET ILE ASP ASP LYS PRO PHE PRO LEU THR SEQRES 38 A 787 LEU SER ILE GLY ILE SER TYR ASP LEU GLY LYS ASN ARG SEQRES 39 A 787 ASP TYR LEU LEU SER THR ALA HIS ASN ALA MET ASP TYR SEQRES 40 A 787 ILE ARG LYS ASN GLY GLY ASN GLY TRP GLN PHE PHE SER SEQRES 41 A 787 PRO ALA MET ASN GLU MET VAL LYS GLU ARG LEU VAL LEU SEQRES 42 A 787 GLY ALA ALA LEU LYS GLU ALA ILE SER ASN ASN GLN LEU SEQRES 43 A 787 LYS LEU VAL TYR GLN PRO GLN ILE PHE ALA GLU THR GLY SEQRES 44 A 787 GLU LEU TYR GLY ILE GLU ALA LEU ALA ARG TRP HIS ASP SEQRES 45 A 787 PRO LEU HIS GLY HIS VAL PRO PRO SER ARG PHE ILE PRO SEQRES 46 A 787 LEU ALA GLU GLU ILE GLY GLU ILE GLU ASN ILE GLY ARG SEQRES 47 A 787 TRP VAL ILE ALA GLU ALA CYS ARG GLN LEU ALA GLU TRP SEQRES 48 A 787 ARG SER GLN ASN ILE HIS ILE PRO ALA LEU SER VAL ASN SEQRES 49 A 787 LEU SER ALA LEU HIS PHE ARG SER ASN GLN LEU PRO ASN SEQRES 50 A 787 GLN VAL SER ASP ALA MET HIS ALA TRP GLY ILE ASP GLY SEQRES 51 A 787 HIS GLN LEU THR VAL GLU ILE THR GLU SER MET MET MET SEQRES 52 A 787 GLU HIS ASP THR GLU ILE PHE LYS ARG ILE GLN ILE LEU SEQRES 53 A 787 ARG ASP MET GLY VAL GLY LEU SER VAL ASP ASP PHE GLY SEQRES 54 A 787 THR GLY PHE SER GLY LEU SER ARG LEU VAL SER LEU PRO SEQRES 55 A 787 VAL THR GLU ILE LYS ILE ASP LYS SER PHE VAL ASP ARG SEQRES 56 A 787 CYS LEU THR GLU LYS ARG ILE LEU ALA LEU LEU GLU ALA SEQRES 57 A 787 ILE THR SER ILE GLY GLN SER LEU ASN LEU THR VAL VAL SEQRES 58 A 787 ALA GLU GLY VAL GLU THR LYS GLU GLN PHE GLU MET LEU SEQRES 59 A 787 ARG LYS ILE HIS CYS ARG VAL ILE GLN GLY TYR PHE PHE SEQRES 60 A 787 SER ARG PRO LEU PRO ALA GLU GLU ILE PRO GLY TRP MET SEQRES 61 A 787 SER SER VAL LEU PRO LEU LYS SEQRES 1 B 787 GLY ILE PHE PHE PRO ALA LEU GLU GLN ASN MET MET GLY SEQRES 2 B 787 ALA VAL LEU ILE ASN GLU ASN ASP GLU VAL MET PHE PHE SEQRES 3 B 787 ASN PRO ALA ALA GLU LYS LEU TRP GLY TYR LYS ARG GLU SEQRES 4 B 787 GLU VAL ILE GLY ASN ASN ILE ASP MET LEU ILE PRO ARG SEQRES 5 B 787 ASP LEU ARG PRO ALA HIS PRO GLU TYR ILE ARG HIS ASN SEQRES 6 B 787 ARG GLU GLY GLY LYS ALA ARG VAL GLU GLY MET SER ALA SEQRES 7 B 787 GLU LEU GLN LEU GLU LYS LYS ASP GLY SER LYS ILE TRP SEQRES 8 B 787 THR ARG PHE ALA LEU SER LYS VAL SER ALA GLU GLY LYS SEQRES 9 B 787 VAL TYR TYR LEU ALA LEU VAL ARG ASP ALA SER VAL GLU SEQRES 10 B 787 MET ALA GLN LYS GLU GLN THR ARG GLN LEU ILE ILE ALA SEQRES 11 B 787 VAL ASP HIS LEU ASP ARG PRO VAL ILE VAL LEU ASP PRO SEQRES 12 B 787 GLU ARG HIS ILE VAL GLN CYS ASN ARG ALA PHE THR GLU SEQRES 13 B 787 MET PHE GLY TYR CYS ILE SER GLU ALA SER GLY MET GLN SEQRES 14 B 787 PRO ASP THR LEU LEU ASN THR PRO GLU PHE PRO ALA ASP SEQRES 15 B 787 ASN ARG ILE ARG LEU GLN GLN LEU LEU TRP LYS THR ALA SEQRES 16 B 787 ARG ASP GLN ASP GLU PHE LEU LEU LEU THR ARG THR GLY SEQRES 17 B 787 GLU LYS ILE TRP ILE LYS ALA SER ILE SER PRO VAL TYR SEQRES 18 B 787 ASP VAL LEU ALA HIS LEU GLN ASN LEU VAL MET THR PHE SEQRES 19 B 787 SER ASP ILE THR GLU GLU ARG GLN ILE ARG GLN LEU GLU SEQRES 20 B 787 GLY ASN ILE LEU ALA ALA MET CYS SER SER PRO PRO PHE SEQRES 21 B 787 HIS GLU MET GLY GLU ILE ILE CYS ARG ASN ILE GLU SER SEQRES 22 B 787 VAL LEU ASN GLU SER HIS VAL SER LEU PHE ALA LEU ARG SEQRES 23 B 787 ASN GLY MET PRO ILE HIS TRP ALA SER SER SER HIS GLY SEQRES 24 B 787 ALA GLU ILE GLN ASN ALA GLN SER TRP SER ALA THR ILE SEQRES 25 B 787 ARG GLN ARG ASP GLY ALA PRO ALA GLY ILE LEU GLN ILE SEQRES 26 B 787 LYS THR SER SER GLY ALA GLU THR SER ALA PHE ILE GLU SEQRES 27 B 787 ARG VAL ALA ASP ILE SER GLN HIS MET ALA ALA LEU ALA SEQRES 28 B 787 LEU GLU GLN GLU LYS SER ARG GLN HIS ILE GLU GLN LEU SEQRES 29 B 787 ILE GLN PHE ASP PRO MET THR GLY LEU PRO ASN ARG ASN SEQRES 30 B 787 ASN LEU HIS ASN TYR LEU ASP ASP LEU VAL ASP LYS ALA SEQRES 31 B 787 VAL SER PRO VAL VAL TYR LEU ILE GLY VAL ASP HIS ILE SEQRES 32 B 787 GLN ASP VAL ILE ASP SER LEU GLY TYR ALA TRP ALA ASP SEQRES 33 B 787 GLN ALA LEU LEU GLU VAL VAL ASN ARG PHE ARG GLU LYS SEQRES 34 B 787 LEU LYS PRO ASP GLN TYR LEU CYS ARG ILE GLU GLY THR SEQRES 35 B 787 GLN PHE VAL LEU VAL SER LEU GLU ASN ASP VAL SER ASN SEQRES 36 B 787 ILE THR GLN ILE ALA ASP GLU LEU ARG ASN VAL VAL SER SEQRES 37 B 787 LYS PRO ILE MET ILE ASP ASP LYS PRO PHE PRO LEU THR SEQRES 38 B 787 LEU SER ILE GLY ILE SER TYR ASP LEU GLY LYS ASN ARG SEQRES 39 B 787 ASP TYR LEU LEU SER THR ALA HIS ASN ALA MET ASP TYR SEQRES 40 B 787 ILE ARG LYS ASN GLY GLY ASN GLY TRP GLN PHE PHE SER SEQRES 41 B 787 PRO ALA MET ASN GLU MET VAL LYS GLU ARG LEU VAL LEU SEQRES 42 B 787 GLY ALA ALA LEU LYS GLU ALA ILE SER ASN ASN GLN LEU SEQRES 43 B 787 LYS LEU VAL TYR GLN PRO GLN ILE PHE ALA GLU THR GLY SEQRES 44 B 787 GLU LEU TYR GLY ILE GLU ALA LEU ALA ARG TRP HIS ASP SEQRES 45 B 787 PRO LEU HIS GLY HIS VAL PRO PRO SER ARG PHE ILE PRO SEQRES 46 B 787 LEU ALA GLU GLU ILE GLY GLU ILE GLU ASN ILE GLY ARG SEQRES 47 B 787 TRP VAL ILE ALA GLU ALA CYS ARG GLN LEU ALA GLU TRP SEQRES 48 B 787 ARG SER GLN ASN ILE HIS ILE PRO ALA LEU SER VAL ASN SEQRES 49 B 787 LEU SER ALA LEU HIS PHE ARG SER ASN GLN LEU PRO ASN SEQRES 50 B 787 GLN VAL SER ASP ALA MET HIS ALA TRP GLY ILE ASP GLY SEQRES 51 B 787 HIS GLN LEU THR VAL GLU ILE THR GLU SER MET MET MET SEQRES 52 B 787 GLU HIS ASP THR GLU ILE PHE LYS ARG ILE GLN ILE LEU SEQRES 53 B 787 ARG ASP MET GLY VAL GLY LEU SER VAL ASP ASP PHE GLY SEQRES 54 B 787 THR GLY PHE SER GLY LEU SER ARG LEU VAL SER LEU PRO SEQRES 55 B 787 VAL THR GLU ILE LYS ILE ASP LYS SER PHE VAL ASP ARG SEQRES 56 B 787 CYS LEU THR GLU LYS ARG ILE LEU ALA LEU LEU GLU ALA SEQRES 57 B 787 ILE THR SER ILE GLY GLN SER LEU ASN LEU THR VAL VAL SEQRES 58 B 787 ALA GLU GLY VAL GLU THR LYS GLU GLN PHE GLU MET LEU SEQRES 59 B 787 ARG LYS ILE HIS CYS ARG VAL ILE GLN GLY TYR PHE PHE SEQRES 60 B 787 SER ARG PRO LEU PRO ALA GLU GLU ILE PRO GLY TRP MET SEQRES 61 B 787 SER SER VAL LEU PRO LEU LYS HET HEM A 901 43 HET C2E A 902 46 HET MG A 903 1 HET MG A 904 1 HET C2E B 901 46 HET HEM B 902 43 HET MG B 903 1 HET MG B 904 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETNAM MG MAGNESIUM ION HETSYN HEM HEME HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 C2E 2(C20 H24 N10 O14 P2) FORMUL 5 MG 4(MG 2+) HELIX 1 AA1 ILE A 21 GLN A 28 1 8 HELIX 2 AA2 ASN A 46 GLY A 54 1 9 HELIX 3 AA3 LYS A 56 ILE A 61 1 6 HELIX 4 AA4 ASN A 64 LEU A 68 5 5 HELIX 5 AA5 PRO A 70 ARG A 74 5 5 HELIX 6 AA6 HIS A 77 GLU A 86 1 10 HELIX 7 AA7 ALA A 133 LEU A 153 1 21 HELIX 8 AA8 ASN A 170 GLY A 178 1 9 HELIX 9 AA9 ASP A 201 LEU A 210 1 10 HELIX 10 AB1 ILE A 256 CYS A 274 1 19 HELIX 11 AB2 PRO A 278 LEU A 294 1 17 HELIX 12 AB3 THR A 352 GLN A 382 1 31 HELIX 13 AB4 ASN A 394 LYS A 408 1 15 HELIX 14 AB5 ILE A 422 LEU A 429 1 8 HELIX 15 AB6 GLY A 430 LYS A 448 1 19 HELIX 16 AB7 ASP A 471 VAL A 486 1 16 HELIX 17 AB8 ASN A 512 ASN A 530 1 19 HELIX 18 AB9 SER A 539 MET A 542 5 4 HELIX 19 AC1 ASN A 543 ASN A 563 1 21 HELIX 20 AC2 PRO A 598 GLY A 610 1 13 HELIX 21 AC3 GLU A 611 GLN A 633 1 23 HELIX 22 AC4 SER A 645 SER A 651 1 7 HELIX 23 AC5 GLN A 653 GLY A 666 1 14 HELIX 24 AC6 THR A 677 GLU A 683 1 7 HELIX 25 AC7 ASP A 685 MET A 698 1 14 HELIX 26 AC8 GLY A 710 LEU A 720 1 11 HELIX 27 AC9 ASP A 728 CYS A 735 1 8 HELIX 28 AD1 GLU A 738 ARG A 740 5 3 HELIX 29 AD2 ILE A 741 ASN A 756 1 16 HELIX 30 AD3 THR A 766 LYS A 775 1 10 HELIX 31 AD4 GLU A 794 VAL A 802 1 9 HELIX 32 AD5 ASN B 46 GLY B 54 1 9 HELIX 33 AD6 HIS B 77 GLY B 88 1 12 HELIX 34 AD7 ALA B 133 HIS B 152 1 20 HELIX 35 AD8 ASN B 170 GLY B 178 1 9 HELIX 36 AD9 CYS B 180 SER B 185 1 6 HELIX 37 AE1 ASN B 202 GLN B 208 1 7 HELIX 38 AE2 GLN B 208 THR B 213 1 6 HELIX 39 AE3 ILE B 256 CYS B 274 1 19 HELIX 40 AE4 PRO B 278 LEU B 294 1 17 HELIX 41 AE5 THR B 352 ILE B 384 1 33 HELIX 42 AE6 ASN B 394 LYS B 408 1 15 HELIX 43 AE7 ILE B 422 GLY B 430 1 9 HELIX 44 AE8 GLY B 430 LEU B 449 1 20 HELIX 45 AE9 ASP B 471 VAL B 485 1 15 HELIX 46 AF1 ASN B 512 GLY B 531 1 20 HELIX 47 AF2 ALA B 541 ASN B 563 1 23 HELIX 48 AF3 PRO B 598 GLY B 610 1 13 HELIX 49 AF4 GLU B 611 GLN B 633 1 23 HELIX 50 AF5 SER B 645 ARG B 650 1 6 HELIX 51 AF6 GLN B 653 ALA B 664 1 12 HELIX 52 AF7 THR B 677 GLU B 683 1 7 HELIX 53 AF8 ASP B 685 MET B 698 1 14 HELIX 54 AF9 GLY B 710 LEU B 720 1 11 HELIX 55 AG1 ASP B 728 GLU B 738 1 11 HELIX 56 AG2 ILE B 741 ASN B 756 1 16 HELIX 57 AG3 THR B 766 LYS B 775 1 10 HELIX 58 AG4 GLU B 794 VAL B 802 1 9 SHEET 1 AA1 3 GLY A 32 ALA A 33 0 SHEET 2 AA1 3 LYS A 123 VAL A 130 -1 O VAL A 130 N GLY A 32 SHEET 3 AA1 3 LEU A 115 ALA A 120 -1 N VAL A 118 O TYR A 125 SHEET 1 AA2 2 LEU A 99 GLU A 102 0 SHEET 2 AA2 2 LYS A 108 THR A 111 -1 O THR A 111 N LEU A 99 SHEET 1 AA3 5 ILE A 166 GLN A 168 0 SHEET 2 AA3 5 VAL A 157 LEU A 160 -1 N VAL A 159 O VAL A 167 SHEET 3 AA3 5 LEU A 246 ASP A 255 -1 O MET A 251 N ILE A 158 SHEET 4 AA3 5 LYS A 229 TYR A 240 -1 N VAL A 239 O ASN A 248 SHEET 5 AA3 5 ASP A 216 LEU A 223 -1 N ASP A 216 O ILE A 236 SHEET 1 AA4 4 MET A 308 SER A 314 0 SHEET 2 AA4 4 HIS A 298 ARG A 305 -1 N ALA A 303 O ILE A 310 SHEET 3 AA4 4 PRO A 338 SER A 347 -1 O LYS A 345 N HIS A 298 SHEET 4 AA4 4 ALA A 324 ARG A 332 -1 N ILE A 331 O ALA A 339 SHEET 1 AA5 5 TYR A 454 GLU A 459 0 SHEET 2 AA5 5 GLN A 462 SER A 467 -1 O VAL A 466 N TYR A 454 SHEET 3 AA5 5 VAL A 413 ASP A 420 -1 N VAL A 413 O SER A 467 SHEET 4 AA5 5 THR A 500 SER A 506 -1 O GLY A 504 N LEU A 416 SHEET 5 AA5 5 GLY A 534 PHE A 537 1 O GLY A 534 N ILE A 503 SHEET 1 AA6 2 ILE A 490 ILE A 492 0 SHEET 2 AA6 2 LYS A 495 PHE A 497 -1 O PHE A 497 N ILE A 490 SHEET 1 AA710 LEU A 790 PRO A 791 0 SHEET 2 AA710 LYS A 566 PHE A 574 -1 N TYR A 569 O LEU A 790 SHEET 3 AA710 VAL A 780 GLY A 783 -1 O ILE A 781 N ILE A 573 SHEET 4 AA710 THR A 758 VAL A 764 1 N VAL A 759 O VAL A 780 SHEET 5 AA710 GLU A 724 ILE A 727 1 N ILE A 725 O VAL A 760 SHEET 6 AA710 GLY A 701 ASP A 705 1 N VAL A 704 O LYS A 726 SHEET 7 AA710 LEU A 672 ILE A 676 1 N VAL A 674 O SER A 703 SHEET 8 AA710 LEU A 640 ASN A 643 1 N VAL A 642 O THR A 673 SHEET 9 AA710 LEU A 580 ARG A 588 1 N ALA A 585 O SER A 641 SHEET 10 AA710 LYS A 566 PHE A 574 -1 N GLN A 572 O GLY A 582 SHEET 1 AA8 2 HIS A 590 ASP A 591 0 SHEET 2 AA8 2 GLY A 595 HIS A 596 -1 O GLY A 595 N ASP A 591 SHEET 1 AA9 5 VAL B 42 PHE B 44 0 SHEET 2 AA9 5 LEU B 35 ILE B 36 -1 N LEU B 35 O MET B 43 SHEET 3 AA9 5 LYS B 123 ARG B 131 -1 O TYR B 126 N ILE B 36 SHEET 4 AA9 5 LYS B 108 ALA B 120 -1 N SER B 116 O LEU B 127 SHEET 5 AA9 5 LEU B 99 GLU B 102 -1 N LEU B 99 O THR B 111 SHEET 1 AB1 5 ILE B 166 GLN B 168 0 SHEET 2 AB1 5 VAL B 157 LEU B 160 -1 N VAL B 159 O VAL B 167 SHEET 3 AB1 5 LEU B 246 ASP B 255 -1 O LEU B 249 N LEU B 160 SHEET 4 AB1 5 ILE B 232 TYR B 240 -1 N VAL B 239 O ASN B 248 SHEET 5 AB1 5 GLU B 219 PHE B 220 -1 N PHE B 220 O ILE B 232 SHEET 1 AB2 4 MET B 308 SER B 314 0 SHEET 2 AB2 4 SER B 297 ARG B 305 -1 N LEU B 301 O ALA B 313 SHEET 3 AB2 4 PRO B 338 SER B 347 -1 O LYS B 345 N HIS B 298 SHEET 4 AB2 4 ALA B 324 ARG B 332 -1 N ILE B 331 O ALA B 339 SHEET 1 AB3 5 TYR B 454 GLU B 459 0 SHEET 2 AB3 5 GLN B 462 SER B 467 -1 O GLN B 462 N GLU B 459 SHEET 3 AB3 5 VAL B 413 ASP B 420 -1 N VAL B 413 O SER B 467 SHEET 4 AB3 5 THR B 500 SER B 506 -1 O GLY B 504 N LEU B 416 SHEET 5 AB3 5 GLY B 534 PHE B 537 1 O GLN B 536 N ILE B 505 SHEET 1 AB4 4 GLY B 595 HIS B 596 0 SHEET 2 AB4 4 LEU B 580 ASP B 591 -1 N ASP B 591 O GLY B 595 SHEET 3 AB4 4 LEU B 565 PHE B 574 -1 N LYS B 566 O ARG B 588 SHEET 4 AB4 4 LEU B 790 PRO B 791 -1 O LEU B 790 N TYR B 569 SHEET 1 AB510 GLY B 595 HIS B 596 0 SHEET 2 AB510 LEU B 580 ASP B 591 -1 N ASP B 591 O GLY B 595 SHEET 3 AB510 LEU B 640 ASN B 643 1 O SER B 641 N ALA B 585 SHEET 4 AB510 LEU B 672 ILE B 676 1 O THR B 673 N LEU B 640 SHEET 5 AB510 GLY B 701 ASP B 705 1 O SER B 703 N ILE B 676 SHEET 6 AB510 GLU B 724 ILE B 727 1 O LYS B 726 N VAL B 704 SHEET 7 AB510 THR B 758 VAL B 764 1 O GLU B 762 N ILE B 727 SHEET 8 AB510 VAL B 780 GLY B 783 1 O GLN B 782 N ALA B 761 SHEET 9 AB510 LEU B 565 PHE B 574 -1 N ILE B 573 O ILE B 781 SHEET 10 AB510 LEU B 790 PRO B 791 -1 O LEU B 790 N TYR B 569 LINK OE2 GLU A 584 MG MG A 903 1555 1555 2.27 LINK OD2 ASP A 705 MG MG A 904 1555 1555 2.64 LINK OE1 GLU A 762 MG MG A 904 1555 1555 2.22 LINK O2P C2E A 902 MG MG A 903 1555 1555 2.06 LINK O1P C2E A 902 MG MG A 904 1555 1555 2.76 LINK OE2 GLU B 584 MG MG B 903 1555 1555 2.78 LINK OD1 ASN B 643 MG MG B 903 1555 1555 2.31 LINK OD2 ASP B 705 MG MG B 904 1555 1555 2.73 LINK OD1 ASP B 728 MG MG B 904 1555 1555 2.90 LINK O2P C2E B 901 MG MG B 903 1555 1555 2.06 LINK O1P C2E B 901 MG MG B 904 1555 1555 2.99 CISPEP 1 LEU A 803 PRO A 804 0 -4.96 CISPEP 2 LEU B 803 PRO B 804 0 -5.81 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 449212590 CONECT 545812591 CONECT 588912591 CONECT1074012681 CONECT1121412681 CONECT1170612682 CONECT1187712682 CONECT125011250512532 CONECT125021250812515 CONECT125031251812522 CONECT125041252512529 CONECT12505125011250612539 CONECT12506125051250712510 CONECT12507125061250812509 CONECT12508125021250712539 CONECT1250912507 CONECT125101250612511 CONECT125111251012512 CONECT12512125111251312514 CONECT1251312512 CONECT1251412512 CONECT12515125021251612540 CONECT12516125151251712519 CONECT12517125161251812520 CONECT12518125031251712540 CONECT1251912516 CONECT125201251712521 CONECT1252112520 CONECT12522125031252312541 CONECT12523125221252412526 CONECT12524125231252512527 CONECT12525125041252412541 CONECT1252612523 CONECT125271252412528 CONECT1252812527 CONECT12529125041253012542 CONECT12530125291253112533 CONECT12531125301253212534 CONECT12532125011253112542 CONECT1253312530 CONECT125341253112535 CONECT125351253412536 CONECT12536125351253712538 CONECT1253712536 CONECT1253812536 CONECT12539125051250812543 CONECT12540125151251812543 CONECT12541125221252512543 CONECT12542125291253212543 CONECT1254312539125401254112542 CONECT1254412545125461254712575 CONECT125451254412590 CONECT125461254412591 CONECT125471254412548 CONECT125481254712549 CONECT12549125481255012551 CONECT125501254912555 CONECT12551125491255212553 CONECT125521255112567 CONECT12553125511255412555 CONECT1255412553 CONECT12555125501255312556 CONECT12556125551255712566 CONECT125571255612558 CONECT125581255712559 CONECT12559125581256012566 CONECT12560125591256112562 CONECT1256112560 CONECT125621256012563 CONECT12563125621256412565 CONECT1256412563 CONECT125651256312566 CONECT12566125561255912565 CONECT1256712552125681256912570 CONECT1256812567 CONECT1256912567 CONECT125701256712571 CONECT125711257012572 CONECT12572125711257312574 CONECT125731257212578 CONECT12574125721257512576 CONECT125751254412574 CONECT12576125741257712578 CONECT1257712576 CONECT12578125731257612579 CONECT12579125781258012589 CONECT125801257912581 CONECT125811258012582 CONECT12582125811258312589 CONECT12583125821258412585 CONECT1258412583 CONECT125851258312586 CONECT12586125851258712588 CONECT1258712586 CONECT125881258612589 CONECT12589125791258212588 CONECT12590 449212545 CONECT12591 5458 588912546 CONECT1259212593125941259512623 CONECT125931259212681 CONECT125941259212682 CONECT125951259212596 CONECT125961259512597 CONECT12597125961259812599 CONECT125981259712603 CONECT12599125971260012601 CONECT126001259912615 CONECT12601125991260212603 CONECT1260212601 CONECT12603125981260112604 CONECT12604126031260512614 CONECT126051260412606 CONECT126061260512607 CONECT12607126061260812614 CONECT12608126071260912610 CONECT1260912608 CONECT126101260812611 CONECT12611126101261212613 CONECT1261212611 CONECT126131261112614 CONECT12614126041260712613 CONECT1261512600126161261712618 CONECT1261612615 CONECT1261712615 CONECT126181261512619 CONECT126191261812620 CONECT12620126191262112622 CONECT126211262012626 CONECT12622126201262312624 CONECT126231259212622 CONECT12624126221262512626 CONECT1262512624 CONECT12626126211262412627 CONECT12627126261262812637 CONECT126281262712629 CONECT126291262812630 CONECT12630126291263112637 CONECT12631126301263212633 CONECT1263212631 CONECT126331263112634 CONECT12634126331263512636 CONECT1263512634 CONECT126361263412637 CONECT12637126271263012636 CONECT126381264212669 CONECT126391264512652 CONECT126401265512659 CONECT126411266212666 CONECT12642126381264312676 CONECT12643126421264412647 CONECT12644126431264512646 CONECT12645126391264412676 CONECT1264612644 CONECT126471264312648 CONECT126481264712649 CONECT12649126481265012651 CONECT1265012649 CONECT1265112649 CONECT12652126391265312677 CONECT12653126521265412656 CONECT12654126531265512657 CONECT12655126401265412677 CONECT1265612653 CONECT126571265412658 CONECT1265812657 CONECT12659126401266012678 CONECT12660126591266112663 CONECT12661126601266212664 CONECT12662126411266112678 CONECT1266312660 CONECT126641266112665 CONECT1266512664 CONECT12666126411266712679 CONECT12667126661266812670 CONECT12668126671266912671 CONECT12669126381266812679 CONECT1267012667 CONECT126711266812672 CONECT126721267112673 CONECT12673126721267412675 CONECT1267412673 CONECT1267512673 CONECT12676126421264512680 CONECT12677126521265512680 CONECT12678126591266212680 CONECT12679126661266912680 CONECT1268012676126771267812679 CONECT12681107401121412593 CONECT12682117061187712594 MASTER 188 0 8 58 66 0 0 612680 2 189 122 END