HEADER TRANSFERASE 24-JUL-24 9CSL TITLE STRUCTURE OF MUTANT HUMAN GERANYLGERANYL PYROPHOSPHATE SYNTHASE TITLE 2 (Y246D-C247L) IN COMPLEX WITH ISOPENTENYL PYROPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GERANYLGERANYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GGPP SYNTHASE,GGPPSASE,(2E,6E)-FARNESYL DIPHOSPHATE COMPND 5 SYNTHASE,DIMETHYLALLYLTRANSTRANSFERASE,FARNESYL DIPHOSPHATE SYNTHASE, COMPND 6 FARNESYLTRANSTRANSFERASE,GERANYLGERANYL DIPHOSPHATE SYNTHASE, COMPND 7 GERANYLTRANSTRANSFERASE; COMPND 8 EC: 2.5.1.-,2.5.1.1,2.5.1.29,2.5.1.10; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GGPS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ISOPENTENYL TRANSFERASE, ISOPRENYL SYNTHASE, ISOPRENOID BIOSYNTHESIS, KEYWDS 2 ISOPRENOIDS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.EZEKIEL,J.PARK REVDAT 1 29-JAN-25 9CSL 0 JRNL AUTH S.J.EZEKIEL,M.SEARLE,J.PARK JRNL TITL ENGINEERING DIMER MUTANTS OF HUMAN GERANYLGERANYL JRNL TITL 2 PYROPHOSPHATE SYNTHASE. JRNL REF PLOS ONE V. 20 17437 2025 JRNL REFN ESSN 1932-6203 JRNL PMID 39813274 JRNL DOI 10.1371/JOURNAL.PONE.0317437 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 95.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 60724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 3000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4200 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 185 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4599 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 424 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51400 REMARK 3 B22 (A**2) : 0.51400 REMARK 3 B33 (A**2) : -1.66700 REMARK 3 B12 (A**2) : 0.25700 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.010 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4825 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4527 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6550 ; 1.725 ; 1.840 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10418 ; 0.615 ; 1.765 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 580 ; 5.285 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 23 ; 6.960 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 833 ;14.305 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 735 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5567 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1097 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1226 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 118 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2423 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 394 ; 0.207 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2317 ; 4.620 ; 4.828 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2317 ; 4.619 ; 4.828 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2898 ; 5.972 ; 8.619 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2899 ; 5.971 ; 8.620 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2508 ; 6.324 ; 5.427 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2461 ; 6.053 ; 5.337 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3652 ; 8.980 ; 9.694 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3581 ; 8.828 ; 9.542 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 296 NULL REMARK 3 1 A 1 A 296 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9CSL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1000285589. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60724 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 95.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.60 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 16.90 REMARK 200 R MERGE FOR SHELL (I) : 1.68300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M DI-AMMONIUM PHOSPHATE, 2.2 M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -173.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 LYS A 196 REMARK 465 GLU A 197 REMARK 465 TYR A 198 REMARK 465 SER A 199 REMARK 465 GLU A 200 REMARK 465 ASP A 242 REMARK 465 ILE A 243 REMARK 465 LYS A 244 REMARK 465 LYS A 245 REMARK 465 ASP A 246 REMARK 465 LEU A 247 REMARK 465 VAL A 248 REMARK 465 HIS A 249 REMARK 465 TYR A 250 REMARK 465 LEU A 251 REMARK 465 GLU A 297 REMARK 465 GLU A 298 REMARK 465 ASN A 299 REMARK 465 GLU A 300 REMARK 465 MET B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 465 LEU B 208 REMARK 465 THR B 209 REMARK 465 GLU B 210 REMARK 465 GLY B 211 REMARK 465 ARG B 237 REMARK 465 GLU B 297 REMARK 465 GLU B 298 REMARK 465 ASN B 299 REMARK 465 GLU B 300 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 SER A 195 OG REMARK 470 ASN A 201 CG OD1 ND2 REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 ILE A 241 CG1 CG2 CD1 REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 MET B 1 CG SD CE REMARK 470 GLU B 2 CG CD OE1 OE2 REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 LYS B 25 CE NZ REMARK 470 LYS B 30 CE NZ REMARK 470 LYS B 71 CE NZ REMARK 470 GLU B 197 CG CD OE1 OE2 REMARK 470 GLU B 200 CG CD OE1 OE2 REMARK 470 ASN B 201 CG OD1 ND2 REMARK 470 LYS B 202 CE NZ REMARK 470 LYS B 212 CG CD CE NZ REMARK 470 ARG B 224 CZ NH1 NH2 REMARK 470 THR B 238 OG1 CG2 REMARK 470 GLU B 239 CG CD OE1 OE2 REMARK 470 ILE B 241 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 582 O HOH B 626 1.96 REMARK 500 OE2 GLU B 252 O HOH B 501 2.13 REMARK 500 OH TYR B 96 O HOH B 502 2.16 REMARK 500 O HOH B 641 O HOH B 679 2.18 REMARK 500 NH2 ARG A 117 O HOH A 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 138 CB - CA - C ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 239 48.26 -79.39 REMARK 500 ASN A 281 85.27 -168.06 REMARK 500 MET A 294 -39.56 -35.54 REMARK 500 SER B 203 41.81 -103.58 REMARK 500 ARG B 224 69.51 -117.56 REMARK 500 ASN B 281 86.84 -167.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 730 DISTANCE = 6.58 ANGSTROMS DBREF 9CSL A 1 300 UNP O95749 GGPPS_HUMAN 1 300 DBREF 9CSL B 1 300 UNP O95749 GGPPS_HUMAN 1 300 SEQADV 9CSL MET A -21 UNP O95749 EXPRESSION TAG SEQADV 9CSL HIS A -20 UNP O95749 EXPRESSION TAG SEQADV 9CSL HIS A -19 UNP O95749 EXPRESSION TAG SEQADV 9CSL HIS A -18 UNP O95749 EXPRESSION TAG SEQADV 9CSL HIS A -17 UNP O95749 EXPRESSION TAG SEQADV 9CSL HIS A -16 UNP O95749 EXPRESSION TAG SEQADV 9CSL HIS A -15 UNP O95749 EXPRESSION TAG SEQADV 9CSL SER A -14 UNP O95749 EXPRESSION TAG SEQADV 9CSL SER A -13 UNP O95749 EXPRESSION TAG SEQADV 9CSL GLY A -12 UNP O95749 EXPRESSION TAG SEQADV 9CSL VAL A -11 UNP O95749 EXPRESSION TAG SEQADV 9CSL ASP A -10 UNP O95749 EXPRESSION TAG SEQADV 9CSL LEU A -9 UNP O95749 EXPRESSION TAG SEQADV 9CSL GLY A -8 UNP O95749 EXPRESSION TAG SEQADV 9CSL THR A -7 UNP O95749 EXPRESSION TAG SEQADV 9CSL GLU A -6 UNP O95749 EXPRESSION TAG SEQADV 9CSL ASN A -5 UNP O95749 EXPRESSION TAG SEQADV 9CSL LEU A -4 UNP O95749 EXPRESSION TAG SEQADV 9CSL TYR A -3 UNP O95749 EXPRESSION TAG SEQADV 9CSL PHE A -2 UNP O95749 EXPRESSION TAG SEQADV 9CSL GLN A -1 UNP O95749 EXPRESSION TAG SEQADV 9CSL SER A 0 UNP O95749 EXPRESSION TAG SEQADV 9CSL ASP A 246 UNP O95749 TYR 246 ENGINEERED MUTATION SEQADV 9CSL LEU A 247 UNP O95749 CYS 247 ENGINEERED MUTATION SEQADV 9CSL MET B -21 UNP O95749 EXPRESSION TAG SEQADV 9CSL HIS B -20 UNP O95749 EXPRESSION TAG SEQADV 9CSL HIS B -19 UNP O95749 EXPRESSION TAG SEQADV 9CSL HIS B -18 UNP O95749 EXPRESSION TAG SEQADV 9CSL HIS B -17 UNP O95749 EXPRESSION TAG SEQADV 9CSL HIS B -16 UNP O95749 EXPRESSION TAG SEQADV 9CSL HIS B -15 UNP O95749 EXPRESSION TAG SEQADV 9CSL SER B -14 UNP O95749 EXPRESSION TAG SEQADV 9CSL SER B -13 UNP O95749 EXPRESSION TAG SEQADV 9CSL GLY B -12 UNP O95749 EXPRESSION TAG SEQADV 9CSL VAL B -11 UNP O95749 EXPRESSION TAG SEQADV 9CSL ASP B -10 UNP O95749 EXPRESSION TAG SEQADV 9CSL LEU B -9 UNP O95749 EXPRESSION TAG SEQADV 9CSL GLY B -8 UNP O95749 EXPRESSION TAG SEQADV 9CSL THR B -7 UNP O95749 EXPRESSION TAG SEQADV 9CSL GLU B -6 UNP O95749 EXPRESSION TAG SEQADV 9CSL ASN B -5 UNP O95749 EXPRESSION TAG SEQADV 9CSL LEU B -4 UNP O95749 EXPRESSION TAG SEQADV 9CSL TYR B -3 UNP O95749 EXPRESSION TAG SEQADV 9CSL PHE B -2 UNP O95749 EXPRESSION TAG SEQADV 9CSL GLN B -1 UNP O95749 EXPRESSION TAG SEQADV 9CSL SER B 0 UNP O95749 EXPRESSION TAG SEQADV 9CSL ASP B 246 UNP O95749 TYR 246 ENGINEERED MUTATION SEQADV 9CSL LEU B 247 UNP O95749 CYS 247 ENGINEERED MUTATION SEQRES 1 A 322 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 322 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLU LYS THR SEQRES 3 A 322 GLN GLU THR VAL GLN ARG ILE LEU LEU GLU PRO TYR LYS SEQRES 4 A 322 TYR LEU LEU GLN LEU PRO GLY LYS GLN VAL ARG THR LYS SEQRES 5 A 322 LEU SER GLN ALA PHE ASN HIS TRP LEU LYS VAL PRO GLU SEQRES 6 A 322 ASP LYS LEU GLN ILE ILE ILE GLU VAL THR GLU MET LEU SEQRES 7 A 322 HIS ASN ALA SER LEU LEU ILE ASP ASP ILE GLU ASP ASN SEQRES 8 A 322 SER LYS LEU ARG ARG GLY PHE PRO VAL ALA HIS SER ILE SEQRES 9 A 322 TYR GLY ILE PRO SER VAL ILE ASN SER ALA ASN TYR VAL SEQRES 10 A 322 TYR PHE LEU GLY LEU GLU LYS VAL LEU THR LEU ASP HIS SEQRES 11 A 322 PRO ASP ALA VAL LYS LEU PHE THR ARG GLN LEU LEU GLU SEQRES 12 A 322 LEU HIS GLN GLY GLN GLY LEU ASP ILE TYR TRP ARG ASP SEQRES 13 A 322 ASN TYR THR CYS PRO THR GLU GLU GLU TYR LYS ALA MET SEQRES 14 A 322 VAL LEU GLN LYS THR GLY GLY LEU PHE GLY LEU ALA VAL SEQRES 15 A 322 GLY LEU MET GLN LEU PHE SER ASP TYR LYS GLU ASP LEU SEQRES 16 A 322 LYS PRO LEU LEU ASN THR LEU GLY LEU PHE PHE GLN ILE SEQRES 17 A 322 ARG ASP ASP TYR ALA ASN LEU HIS SER LYS GLU TYR SER SEQRES 18 A 322 GLU ASN LYS SER PHE CYS GLU ASP LEU THR GLU GLY LYS SEQRES 19 A 322 PHE SER PHE PRO THR ILE HIS ALA ILE TRP SER ARG PRO SEQRES 20 A 322 GLU SER THR GLN VAL GLN ASN ILE LEU ARG GLN ARG THR SEQRES 21 A 322 GLU ASN ILE ASP ILE LYS LYS ASP LEU VAL HIS TYR LEU SEQRES 22 A 322 GLU ASP VAL GLY SER PHE GLU TYR THR ARG ASN THR LEU SEQRES 23 A 322 LYS GLU LEU GLU ALA LYS ALA TYR LYS GLN ILE ASP ALA SEQRES 24 A 322 ARG GLY GLY ASN PRO GLU LEU VAL ALA LEU VAL LYS HIS SEQRES 25 A 322 LEU SER LYS MET PHE LYS GLU GLU ASN GLU SEQRES 1 B 322 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 322 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLU LYS THR SEQRES 3 B 322 GLN GLU THR VAL GLN ARG ILE LEU LEU GLU PRO TYR LYS SEQRES 4 B 322 TYR LEU LEU GLN LEU PRO GLY LYS GLN VAL ARG THR LYS SEQRES 5 B 322 LEU SER GLN ALA PHE ASN HIS TRP LEU LYS VAL PRO GLU SEQRES 6 B 322 ASP LYS LEU GLN ILE ILE ILE GLU VAL THR GLU MET LEU SEQRES 7 B 322 HIS ASN ALA SER LEU LEU ILE ASP ASP ILE GLU ASP ASN SEQRES 8 B 322 SER LYS LEU ARG ARG GLY PHE PRO VAL ALA HIS SER ILE SEQRES 9 B 322 TYR GLY ILE PRO SER VAL ILE ASN SER ALA ASN TYR VAL SEQRES 10 B 322 TYR PHE LEU GLY LEU GLU LYS VAL LEU THR LEU ASP HIS SEQRES 11 B 322 PRO ASP ALA VAL LYS LEU PHE THR ARG GLN LEU LEU GLU SEQRES 12 B 322 LEU HIS GLN GLY GLN GLY LEU ASP ILE TYR TRP ARG ASP SEQRES 13 B 322 ASN TYR THR CYS PRO THR GLU GLU GLU TYR LYS ALA MET SEQRES 14 B 322 VAL LEU GLN LYS THR GLY GLY LEU PHE GLY LEU ALA VAL SEQRES 15 B 322 GLY LEU MET GLN LEU PHE SER ASP TYR LYS GLU ASP LEU SEQRES 16 B 322 LYS PRO LEU LEU ASN THR LEU GLY LEU PHE PHE GLN ILE SEQRES 17 B 322 ARG ASP ASP TYR ALA ASN LEU HIS SER LYS GLU TYR SER SEQRES 18 B 322 GLU ASN LYS SER PHE CYS GLU ASP LEU THR GLU GLY LYS SEQRES 19 B 322 PHE SER PHE PRO THR ILE HIS ALA ILE TRP SER ARG PRO SEQRES 20 B 322 GLU SER THR GLN VAL GLN ASN ILE LEU ARG GLN ARG THR SEQRES 21 B 322 GLU ASN ILE ASP ILE LYS LYS ASP LEU VAL HIS TYR LEU SEQRES 22 B 322 GLU ASP VAL GLY SER PHE GLU TYR THR ARG ASN THR LEU SEQRES 23 B 322 LYS GLU LEU GLU ALA LYS ALA TYR LYS GLN ILE ASP ALA SEQRES 24 B 322 ARG GLY GLY ASN PRO GLU LEU VAL ALA LEU VAL LYS HIS SEQRES 25 B 322 LEU SER LYS MET PHE LYS GLU GLU ASN GLU HET IPE A 401 14 HET CL A 402 1 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 B 404 5 HET SO4 B 405 5 HET SO4 B 406 5 HET SO4 B 407 5 HETNAM IPE 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETSYN IPE ISOPENTENYL PYROPHOSPHATE FORMUL 3 IPE C5 H12 O7 P2 FORMUL 4 CL CL 1- FORMUL 5 SO4 12(O4 S 2-) FORMUL 17 HOH *424(H2 O) HELIX 1 AA1 MET A 1 GLN A 21 1 21 HELIX 2 AA2 GLN A 26 LYS A 40 1 15 HELIX 3 AA3 PRO A 42 ASP A 68 1 27 HELIX 4 AA4 VAL A 78 GLY A 84 1 7 HELIX 5 AA5 GLY A 84 THR A 105 1 22 HELIX 6 AA6 ASP A 110 ASN A 135 1 26 HELIX 7 AA7 THR A 140 THR A 152 1 13 HELIX 8 AA8 THR A 152 LEU A 165 1 14 HELIX 9 AA9 LEU A 173 HIS A 194 1 22 HELIX 10 AB1 LYS A 202 GLY A 211 1 10 HELIX 11 AB2 SER A 214 ARG A 224 1 11 HELIX 12 AB3 GLU A 226 ARG A 237 1 12 HELIX 13 AB4 GLY A 255 ALA A 277 1 23 HELIX 14 AB5 ASN A 281 LYS A 293 1 13 HELIX 15 AB6 MET A 294 LYS A 296 5 3 HELIX 16 AB7 GLU B 2 GLN B 21 1 20 HELIX 17 AB8 GLN B 26 LYS B 40 1 15 HELIX 18 AB9 PRO B 42 ASP B 68 1 27 HELIX 19 AC1 VAL B 78 GLY B 84 1 7 HELIX 20 AC2 GLY B 84 THR B 105 1 22 HELIX 21 AC3 ASP B 110 ASN B 135 1 26 HELIX 22 AC4 THR B 140 PHE B 166 1 27 HELIX 23 AC5 LEU B 173 SER B 195 1 23 HELIX 24 AC6 SER B 195 SER B 203 1 9 HELIX 25 AC7 SER B 214 ARG B 224 1 11 HELIX 26 AC8 THR B 228 GLN B 236 1 9 HELIX 27 AC9 GLU B 239 VAL B 254 1 16 HELIX 28 AD1 GLY B 255 ARG B 278 1 24 HELIX 29 AD2 ASN B 281 LYS B 293 1 13 HELIX 30 AD3 MET B 294 LYS B 296 5 3 SHEET 1 AA1 2 LEU A 72 ARG A 73 0 SHEET 2 AA1 2 PHE A 76 PRO A 77 -1 O PHE A 76 N ARG A 73 SHEET 1 AA2 2 LEU B 72 ARG B 73 0 SHEET 2 AA2 2 PHE B 76 PRO B 77 -1 O PHE B 76 N ARG B 73 SSBOND 1 CYS A 205 CYS B 205 1555 10446 2.27 CRYST1 191.110 191.110 96.630 90.00 90.00 120.00 P 6 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005233 0.003021 0.000000 0.00000 SCALE2 0.000000 0.006042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010349 0.00000 CONECT 4662 4663 4664 CONECT 4663 4662 4668 CONECT 4664 4662 4665 CONECT 4665 4664 4666 4667 CONECT 4666 4665 CONECT 4667 4665 CONECT 4668 4663 4669 4670 4671 CONECT 4669 4668 CONECT 4670 4668 CONECT 4671 4668 4672 CONECT 4672 4671 4673 4674 4675 CONECT 4673 4672 CONECT 4674 4672 CONECT 4675 4672 CONECT 4677 4678 4679 4680 4681 CONECT 4678 4677 CONECT 4679 4677 CONECT 4680 4677 CONECT 4681 4677 CONECT 4682 4683 4684 4685 4686 CONECT 4683 4682 CONECT 4684 4682 CONECT 4685 4682 CONECT 4686 4682 CONECT 4687 4688 4689 4690 4691 CONECT 4688 4687 CONECT 4689 4687 CONECT 4690 4687 CONECT 4691 4687 CONECT 4692 4693 4694 4695 4696 CONECT 4693 4692 CONECT 4694 4692 CONECT 4695 4692 CONECT 4696 4692 CONECT 4697 4698 4699 4700 4701 CONECT 4698 4697 CONECT 4699 4697 CONECT 4700 4697 CONECT 4701 4697 CONECT 4702 4703 4704 4705 4706 CONECT 4703 4702 CONECT 4704 4702 CONECT 4705 4702 CONECT 4706 4702 CONECT 4707 4708 4709 4710 4711 CONECT 4708 4707 CONECT 4709 4707 CONECT 4710 4707 CONECT 4711 4707 CONECT 4712 4713 4714 4715 4716 CONECT 4713 4712 CONECT 4714 4712 CONECT 4715 4712 CONECT 4716 4712 CONECT 4717 4718 4719 4720 4721 CONECT 4718 4717 CONECT 4719 4717 CONECT 4720 4717 CONECT 4721 4717 CONECT 4722 4723 4724 4725 4726 CONECT 4723 4722 CONECT 4724 4722 CONECT 4725 4722 CONECT 4726 4722 CONECT 4727 4728 4729 4730 4731 CONECT 4728 4727 CONECT 4729 4727 CONECT 4730 4727 CONECT 4731 4727 CONECT 4732 4733 4734 4735 4736 CONECT 4733 4732 CONECT 4734 4732 CONECT 4735 4732 CONECT 4736 4732 MASTER 458 0 14 30 4 0 0 6 5098 2 74 50 END