HEADER ELECTRON TRANSPORT 26-JUL-24 9CUF TITLE ROOM TEMPERATURE SSX STRUCTURE OF CCNIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C-552; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 28-466; COMPND 5 SYNONYM: AMMONIA-FORMING CYTOCHROME C NITRITE REDUCTASE, CYTOCHROME C COMPND 6 NITRITE REDUCTASE; COMPND 7 EC: 1.7.2.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 70863; SOURCE 4 GENE: NRFA, SO_3980; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYTOCHROME C NITRITE REDUCTASE, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR T.N.MALLA,M.SCHMIDT REVDAT 1 15-JAN-25 9CUF 0 JRNL AUTH T.N.MALLA,S.MUNIYAPPAN,D.MENENDEZ,F.OGUKWE,A.N.DALE, JRNL AUTH 2 J.D.CLAYTON,D.D.WEATHERALL,P.KARKI,S.DANGI,V.MANDELLA, JRNL AUTH 3 A.A.PACHECO,E.A.STOJKOVIC,S.L.ROSE,J.ORLANS,S.BASU, JRNL AUTH 4 D.DE SANCTIS,M.SCHMIDT JRNL TITL EXPLOITING FOURTH-GENERATION SYNCHROTRON RADIATION FOR JRNL TITL 2 ENZYME AND PHOTORECEPTOR CHARACTERIZATION. JRNL REF IUCRJ 2025 JRNL REFN ESSN 2052-2525 JRNL PMID 39575537 JRNL DOI 10.1107/S2052252524010868 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21_5207 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 16703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1657 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.4900 - 7.5500 1.00 1426 173 0.1376 0.2167 REMARK 3 2 7.5400 - 6.0000 1.00 1338 153 0.1863 0.2699 REMARK 3 3 5.9900 - 5.2400 1.00 1340 139 0.1900 0.2952 REMARK 3 4 5.2400 - 4.7600 1.00 1320 125 0.1840 0.2673 REMARK 3 5 4.7600 - 4.4200 1.00 1334 131 0.1959 0.3263 REMARK 3 6 4.4200 - 4.1600 1.00 1283 140 0.2371 0.3283 REMARK 3 7 4.1600 - 3.9500 1.00 1309 133 0.2546 0.3520 REMARK 3 8 3.9500 - 3.7800 1.00 1285 155 0.2926 0.3598 REMARK 3 9 3.7800 - 3.6300 0.99 1257 136 0.3350 0.4034 REMARK 3 10 3.6300 - 3.5100 0.98 1250 171 0.3602 0.4804 REMARK 3 11 3.5100 - 3.4000 0.74 940 95 0.3961 0.3623 REMARK 3 12 3.4000 - 3.3000 0.74 964 106 0.3546 0.3976 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.709 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 113.4 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 98.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 7658 REMARK 3 ANGLE : 1.434 10463 REMARK 3 CHIRALITY : 0.050 1004 REMARK 3 PLANARITY : 0.009 1302 REMARK 3 DIHEDRAL : 19.622 2802 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9CUF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1000286364. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-23 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI JUNGFRAU 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17548 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 59.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.37 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.39 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 4K, 200 MM SODIUM MALONATE, REMARK 280 100 MM MES, PH 6.5, BATCH MODE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.42000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.10000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.73500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 114.10000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.42000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.73500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -260.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 325 O2A HEC B 505 1.31 REMARK 500 CB CYS B 307 CAB HEC B 505 1.56 REMARK 500 SG CYS B 275 CBB HEC B 504 1.74 REMARK 500 O SER A 380 N GLY A 382 2.08 REMARK 500 O ARG A 302 OG1 THR A 306 2.10 REMARK 500 CB CYS A 202 CAC HEC A 503 2.10 REMARK 500 SG CYS B 307 CBB HEC B 505 2.12 REMARK 500 OG SER A 124 O ASN A 153 2.12 REMARK 500 OH TYR A 207 OH TYR A 234 2.12 REMARK 500 O MET B 197 N ALA B 200 2.13 REMARK 500 CE LYS A 123 FE HEC A 501 2.13 REMARK 500 N SER A 32 O GLU A 132 2.15 REMARK 500 O SER B 158 NH2 ARG B 169 2.15 REMARK 500 OG SER B 124 O ASN B 153 2.16 REMARK 500 OD2 ASP B 69 NZ LYS B 333 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 220 C PRO A 221 N 0.134 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 307 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 36 108.48 -162.53 REMARK 500 TRP A 53 -38.64 -36.46 REMARK 500 SER A 59 88.85 -163.56 REMARK 500 ALA A 65 7.58 -58.18 REMARK 500 ASP A 69 84.42 -170.86 REMARK 500 PRO A 70 -9.90 -58.40 REMARK 500 TRP A 76 54.04 -95.16 REMARK 500 MET A 92 5.77 -68.98 REMARK 500 ASN A 109 -103.76 -114.45 REMARK 500 ALA A 110 2.14 -163.44 REMARK 500 ASP A 112 -157.78 -100.47 REMARK 500 PRO A 116 -165.65 -104.72 REMARK 500 ALA A 118 1.30 -55.73 REMARK 500 ASP A 126 -6.92 -53.02 REMARK 500 GLN A 134 -19.90 -167.63 REMARK 500 TYR A 139 -76.78 -77.54 REMARK 500 LYS A 141 85.46 -64.97 REMARK 500 THR A 152 -58.52 -127.14 REMARK 500 CYS A 157 -75.99 -36.31 REMARK 500 SER A 158 0.34 -63.66 REMARK 500 LYS A 163 101.24 -36.63 REMARK 500 LYS A 188 -91.71 -48.07 REMARK 500 ALA A 189 87.57 28.92 REMARK 500 PRO A 221 43.11 -80.34 REMARK 500 ASP A 236 -77.61 -82.09 REMARK 500 GLU A 239 41.16 72.83 REMARK 500 LEU A 247 -60.49 -99.51 REMARK 500 HIS A 257 71.34 23.47 REMARK 500 VAL A 273 76.80 -110.08 REMARK 500 SER A 274 153.78 -42.03 REMARK 500 ARG A 302 71.02 -150.06 REMARK 500 GLU A 305 -45.69 60.79 REMARK 500 THR A 306 -120.63 -83.49 REMARK 500 THR A 309 14.95 -69.67 REMARK 500 CYS A 310 -40.35 -149.75 REMARK 500 SER A 312 66.34 -105.43 REMARK 500 THR A 322 -3.84 -59.51 REMARK 500 GLU A 346 0.37 -65.64 REMARK 500 LEU A 353 13.65 -68.30 REMARK 500 MET A 360 21.05 -69.33 REMARK 500 GLN A 371 5.44 -66.35 REMARK 500 HIS A 381 26.61 -50.32 REMARK 500 HIS A 386 -71.23 -80.57 REMARK 500 THR A 419 -33.62 -136.44 REMARK 500 ASP A 454 -89.44 -82.73 REMARK 500 MET A 455 22.16 -62.60 REMARK 500 ALA A 461 -70.15 -65.80 REMARK 500 THR A 469 31.21 -80.80 REMARK 500 LYS B 45 -4.36 85.66 REMARK 500 PHE B 46 60.22 -151.90 REMARK 500 REMARK 500 THIS ENTRY HAS 110 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 503 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 91 NE2 REMARK 620 2 HEC A 503 NA 101.3 REMARK 620 3 HEC A 503 NB 89.7 85.3 REMARK 620 4 HEC A 503 NC 79.9 174.6 89.4 REMARK 620 5 HEC A 503 ND 90.6 89.9 175.2 95.3 REMARK 620 6 HIS A 203 NE2 152.8 99.4 74.6 77.8 106.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 161 NE2 REMARK 620 2 HEC A 502 NA 73.7 REMARK 620 3 HEC A 502 NB 84.1 90.4 REMARK 620 4 HEC A 502 NC 109.2 177.1 90.0 REMARK 620 5 HEC A 502 ND 94.1 87.7 177.7 92.0 REMARK 620 6 HIS A 294 NE2 167.0 94.9 102.6 82.2 78.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 506 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 205 OE2 REMARK 620 2 ASP A 242 OD1 154.9 REMARK 620 3 ASP A 242 OD2 150.7 42.2 REMARK 620 4 LYS A 254 O 66.5 97.9 93.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 505 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 268 NE2 REMARK 620 2 HEC A 505 NA 84.1 REMARK 620 3 HEC A 505 NB 96.3 90.0 REMARK 620 4 HEC A 505 NC 103.8 172.0 89.5 REMARK 620 5 HEC A 505 ND 91.9 83.8 169.1 95.5 REMARK 620 6 HIS A 311 NE2 153.1 75.1 100.5 97.2 69.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 504 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 279 NE2 REMARK 620 2 HEC A 504 NA 106.2 REMARK 620 3 HEC A 504 NB 78.9 84.5 REMARK 620 4 HEC A 504 NC 62.3 168.2 90.3 REMARK 620 5 HEC A 504 ND 89.8 100.0 168.6 83.2 REMARK 620 6 HIS A 386 NE2 127.8 112.6 71.7 75.6 115.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 503 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 91 NE2 REMARK 620 2 HEC B 503 NA 72.4 REMARK 620 3 HEC B 503 NB 93.5 88.1 REMARK 620 4 HEC B 503 NC 100.2 170.0 85.7 REMARK 620 5 HEC B 503 ND 73.5 88.0 166.9 96.4 REMARK 620 6 HIS B 203 NE2 149.2 78.0 93.8 110.2 97.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 161 NE2 REMARK 620 2 HEC B 502 NA 72.8 REMARK 620 3 HEC B 502 NB 117.0 92.2 REMARK 620 4 HEC B 502 NC 116.5 168.2 89.6 REMARK 620 5 HEC B 502 ND 73.2 88.6 169.5 87.5 REMARK 620 6 HIS B 294 NE2 139.9 72.3 83.5 96.4 86.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 506 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 206 O REMARK 620 2 TYR B 235 OH 96.5 REMARK 620 3 LYS B 254 O 124.5 125.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 504 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 279 NE2 REMARK 620 2 HEC B 504 NA 86.1 REMARK 620 3 HEC B 504 NB 97.5 89.6 REMARK 620 4 HEC B 504 NC 86.8 169.0 82.9 REMARK 620 5 HEC B 504 ND 76.5 92.2 173.5 94.4 REMARK 620 6 HIS B 386 NE2 163.2 109.0 76.0 77.1 109.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 505 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 311 NE2 REMARK 620 2 HEC B 505 NA 101.6 REMARK 620 3 HEC B 505 NB 71.8 93.4 REMARK 620 4 HEC B 505 NC 81.9 175.3 84.7 REMARK 620 5 HEC B 505 ND 113.8 91.1 171.9 90.3 REMARK 620 N 1 2 3 4 DBREF 9CUF A 32 470 UNP Q8EAC7 NRFA_SHEON 28 466 DBREF 9CUF B 32 470 UNP Q8EAC7 NRFA_SHEON 28 466 SEQRES 1 A 439 SER ASP LYS THR GLU PRO ARG ASN GLU VAL TYR LYS ASP SEQRES 2 A 439 LYS PHE LYS ASN GLN TYR ASN SER TRP HIS ASP THR ALA SEQRES 3 A 439 LYS SER GLU GLU LEU VAL ASP ALA LEU GLU GLN ASP PRO SEQRES 4 A 439 ASN MET VAL ILE LEU TRP ALA GLY TYR ALA PHE ALA LYS SEQRES 5 A 439 ASP TYR LYS ALA PRO ARG GLY HIS MET TYR ALA VAL THR SEQRES 6 A 439 ASP VAL ARG ASN THR LEU ARG THR GLY ALA PRO LYS ASN SEQRES 7 A 439 ALA GLU ASP GLY PRO LEU PRO MET ALA CYS TRP SER CYS SEQRES 8 A 439 LYS SER PRO ASP VAL PRO ARG LEU ILE GLU GLU GLN GLY SEQRES 9 A 439 GLU ASP GLY TYR PHE LYS GLY LYS TRP ALA LYS GLY GLY SEQRES 10 A 439 PRO GLU VAL THR ASN THR ILE GLY CYS SER ASP CYS HIS SEQRES 11 A 439 GLU LYS GLY SER PRO LYS LEU ARG ILE SER ARG PRO TYR SEQRES 12 A 439 VAL ASP ARG ALA LEU ASP ALA ILE GLY THR PRO PHE SER SEQRES 13 A 439 LYS ALA SER LYS GLN ASP LYS GLU SER MET VAL CYS ALA SEQRES 14 A 439 GLN CYS HIS VAL GLU TYR TYR PHE GLU LYS LYS GLU ASP SEQRES 15 A 439 LYS LYS GLY PHE VAL LYS PHE PRO TRP ASP MET GLY VAL SEQRES 16 A 439 THR VAL ASP GLN MET GLU VAL TYR TYR ASP GLY ILE GLU SEQRES 17 A 439 PHE SER ASP TRP THR HIS ALA LEU SER LYS THR PRO MET SEQRES 18 A 439 LEU LYS ALA GLN HIS PRO GLU TYR GLU THR TRP LYS MET SEQRES 19 A 439 GLY ILE HIS GLY LYS ASN ASN VAL SER CYS VAL ASP CYS SEQRES 20 A 439 HIS MET PRO LYS VAL THR SER PRO GLU GLY LYS LYS PHE SEQRES 21 A 439 THR ASP HIS LYS VAL GLY ASN PRO PHE ASP ARG PHE GLU SEQRES 22 A 439 GLU THR CYS ALA THR CYS HIS SER GLN THR LYS GLU PHE SEQRES 23 A 439 LEU VAL GLY VAL THR ASN GLU ARG LYS ALA LYS VAL LYS SEQRES 24 A 439 GLU MET LYS LEU LYS ALA GLU GLU GLN LEU VAL LYS ALA SEQRES 25 A 439 HIS PHE GLU ALA ALA LYS ALA TRP GLU LEU GLY ALA THR SEQRES 26 A 439 GLU ALA GLU MET LYS PRO ILE LEU THR ASP ILE ARG HIS SEQRES 27 A 439 ALA GLN TRP ARG TRP ASP LEU ALA ILE ALA SER HIS GLY SEQRES 28 A 439 VAL ALA ALA HIS ALA PRO GLU GLU ALA LEU ARG VAL LEU SEQRES 29 A 439 GLY THR SER VAL ASN LYS ALA ALA ASP ALA ARG VAL LYS SEQRES 30 A 439 LEU ALA GLN LEU LEU ALA LYS LYS GLY LEU THR ASP PRO SEQRES 31 A 439 VAL ALA ILE PRO ASP ILE SER THR LYS ALA LYS ALA GLN SEQRES 32 A 439 ALA VAL LEU GLY MET ASP MET GLU LYS MET ASN ALA GLU SEQRES 33 A 439 LYS GLU ALA PHE LYS LYS ASP MET LEU PRO LYS TRP ASP SEQRES 34 A 439 ALA GLU ALA LYS LYS ARG GLU ALA THR TYR SEQRES 1 B 439 SER ASP LYS THR GLU PRO ARG ASN GLU VAL TYR LYS ASP SEQRES 2 B 439 LYS PHE LYS ASN GLN TYR ASN SER TRP HIS ASP THR ALA SEQRES 3 B 439 LYS SER GLU GLU LEU VAL ASP ALA LEU GLU GLN ASP PRO SEQRES 4 B 439 ASN MET VAL ILE LEU TRP ALA GLY TYR ALA PHE ALA LYS SEQRES 5 B 439 ASP TYR LYS ALA PRO ARG GLY HIS MET TYR ALA VAL THR SEQRES 6 B 439 ASP VAL ARG ASN THR LEU ARG THR GLY ALA PRO LYS ASN SEQRES 7 B 439 ALA GLU ASP GLY PRO LEU PRO MET ALA CYS TRP SER CYS SEQRES 8 B 439 LYS SER PRO ASP VAL PRO ARG LEU ILE GLU GLU GLN GLY SEQRES 9 B 439 GLU ASP GLY TYR PHE LYS GLY LYS TRP ALA LYS GLY GLY SEQRES 10 B 439 PRO GLU VAL THR ASN THR ILE GLY CYS SER ASP CYS HIS SEQRES 11 B 439 GLU LYS GLY SER PRO LYS LEU ARG ILE SER ARG PRO TYR SEQRES 12 B 439 VAL ASP ARG ALA LEU ASP ALA ILE GLY THR PRO PHE SER SEQRES 13 B 439 LYS ALA SER LYS GLN ASP LYS GLU SER MET VAL CYS ALA SEQRES 14 B 439 GLN CYS HIS VAL GLU TYR TYR PHE GLU LYS LYS GLU ASP SEQRES 15 B 439 LYS LYS GLY PHE VAL LYS PHE PRO TRP ASP MET GLY VAL SEQRES 16 B 439 THR VAL ASP GLN MET GLU VAL TYR TYR ASP GLY ILE GLU SEQRES 17 B 439 PHE SER ASP TRP THR HIS ALA LEU SER LYS THR PRO MET SEQRES 18 B 439 LEU LYS ALA GLN HIS PRO GLU TYR GLU THR TRP LYS MET SEQRES 19 B 439 GLY ILE HIS GLY LYS ASN ASN VAL SER CYS VAL ASP CYS SEQRES 20 B 439 HIS MET PRO LYS VAL THR SER PRO GLU GLY LYS LYS PHE SEQRES 21 B 439 THR ASP HIS LYS VAL GLY ASN PRO PHE ASP ARG PHE GLU SEQRES 22 B 439 GLU THR CYS ALA THR CYS HIS SER GLN THR LYS GLU PHE SEQRES 23 B 439 LEU VAL GLY VAL THR ASN GLU ARG LYS ALA LYS VAL LYS SEQRES 24 B 439 GLU MET LYS LEU LYS ALA GLU GLU GLN LEU VAL LYS ALA SEQRES 25 B 439 HIS PHE GLU ALA ALA LYS ALA TRP GLU LEU GLY ALA THR SEQRES 26 B 439 GLU ALA GLU MET LYS PRO ILE LEU THR ASP ILE ARG HIS SEQRES 27 B 439 ALA GLN TRP ARG TRP ASP LEU ALA ILE ALA SER HIS GLY SEQRES 28 B 439 VAL ALA ALA HIS ALA PRO GLU GLU ALA LEU ARG VAL LEU SEQRES 29 B 439 GLY THR SER VAL ASN LYS ALA ALA ASP ALA ARG VAL LYS SEQRES 30 B 439 LEU ALA GLN LEU LEU ALA LYS LYS GLY LEU THR ASP PRO SEQRES 31 B 439 VAL ALA ILE PRO ASP ILE SER THR LYS ALA LYS ALA GLN SEQRES 32 B 439 ALA VAL LEU GLY MET ASP MET GLU LYS MET ASN ALA GLU SEQRES 33 B 439 LYS GLU ALA PHE LYS LYS ASP MET LEU PRO LYS TRP ASP SEQRES 34 B 439 ALA GLU ALA LYS LYS ARG GLU ALA THR TYR HET HEC A 501 43 HET HEC A 502 43 HET HEC A 503 43 HET HEC A 504 43 HET HEC A 505 43 HET CA A 506 1 HET HEC B 501 43 HET HEC B 502 43 HET HEC B 503 43 HET HEC B 504 43 HET HEC B 505 43 HET CA B 506 1 HET PE3 B 507 43 HETNAM HEC HEME C HETNAM CA CALCIUM ION HETNAM PE3 3,6,9,12,15,18,21,24,27,30,33,36,39- HETNAM 2 PE3 TRIDECAOXAHENTETRACONTANE-1,41-DIOL HETSYN PE3 POLYETHYLENE GLYCOL FORMUL 3 HEC 10(C34 H34 FE N4 O4) FORMUL 8 CA 2(CA 2+) FORMUL 15 PE3 C28 H58 O15 HELIX 1 AA1 LYS A 47 SER A 52 1 6 HELIX 2 AA2 TRP A 53 LYS A 58 5 6 HELIX 3 AA3 ASP A 69 TRP A 76 1 8 HELIX 4 AA4 TYR A 79 LYS A 83 5 5 HELIX 5 AA5 GLY A 90 MET A 92 5 3 HELIX 6 AA6 TYR A 93 VAL A 98 1 6 HELIX 7 AA7 PRO A 116 LYS A 123 5 8 HELIX 8 AA8 VAL A 127 GLY A 135 1 9 HELIX 9 AA9 GLY A 135 LYS A 141 1 7 HELIX 10 AB1 LYS A 143 VAL A 151 5 9 HELIX 11 AB2 GLY A 156 ASP A 159 5 4 HELIX 12 AB3 ARG A 172 ASP A 180 1 9 HELIX 13 AB4 SER A 190 VAL A 198 1 9 HELIX 14 AB5 LYS A 211 LYS A 215 5 5 HELIX 15 AB6 THR A 227 ILE A 238 1 12 HELIX 16 AB7 GLU A 259 GLY A 266 1 8 HELIX 17 AB8 HIS A 268 ASN A 272 5 5 HELIX 18 AB9 SER A 274 MET A 280 1 7 HELIX 19 AC1 THR A 306 CYS A 310 5 5 HELIX 20 AC2 GLU A 316 LEU A 353 1 38 HELIX 21 AC3 MET A 360 ILE A 378 1 19 HELIX 22 AC4 GLY A 382 ALA A 387 1 6 HELIX 23 AC5 ALA A 387 LYS A 416 1 30 HELIX 24 AC6 THR A 429 ALA A 435 1 7 HELIX 25 AC7 MET A 441 LYS A 452 1 12 HELIX 26 AC8 LYS A 458 GLU A 467 1 10 HELIX 27 AC9 PHE B 46 ASP B 55 1 10 HELIX 28 AD1 THR B 56 LYS B 58 5 3 HELIX 29 AD2 ASP B 64 ASP B 69 1 6 HELIX 30 AD3 TYR B 79 LYS B 83 5 5 HELIX 31 AD4 GLY B 90 MET B 92 5 3 HELIX 32 AD5 TYR B 93 THR B 101 1 9 HELIX 33 AD6 PRO B 116 TRP B 120 5 5 HELIX 34 AD7 VAL B 127 GLU B 133 1 7 HELIX 35 AD8 GLU B 136 LYS B 141 1 6 HELIX 36 AD9 GLY B 147 VAL B 151 5 5 HELIX 37 AE1 GLY B 156 HIS B 161 1 6 HELIX 38 AE2 ARG B 172 GLY B 183 1 12 HELIX 39 AE3 SER B 190 VAL B 198 1 9 HELIX 40 AE4 LYS B 211 LYS B 215 5 5 HELIX 41 AE5 THR B 227 ILE B 238 1 12 HELIX 42 AE6 PRO B 258 LYS B 264 1 7 HELIX 43 AE7 HIS B 268 ASN B 272 5 5 HELIX 44 AE8 SER B 274 MET B 280 1 7 HELIX 45 AE9 THR B 314 LEU B 353 1 40 HELIX 46 AF1 MET B 360 ILE B 378 1 19 HELIX 47 AF2 GLY B 382 ALA B 387 1 6 HELIX 48 AF3 ALA B 387 LYS B 415 1 29 HELIX 49 AF4 THR B 429 VAL B 436 1 8 HELIX 50 AF5 ASP B 440 LYS B 452 1 13 HELIX 51 AF6 MET B 455 GLU B 467 1 13 SHEET 1 AA1 2 HIS A 161 GLU A 162 0 SHEET 2 AA1 2 SER A 165 LEU A 168 -1 O SER A 165 N GLU A 162 SHEET 1 AA2 2 TYR A 207 PHE A 208 0 SHEET 2 AA2 2 VAL A 218 LYS A 219 -1 O LYS A 219 N TYR A 207 SHEET 1 AA3 2 TRP A 243 THR A 244 0 SHEET 2 AA3 2 PRO A 251 MET A 252 -1 O MET A 252 N TRP A 243 SHEET 1 AA4 2 TRP B 243 THR B 244 0 SHEET 2 AA4 2 PRO B 251 MET B 252 -1 O MET B 252 N TRP B 243 LINK SG CYS A 119 CAB HEC A 501 1555 1555 1.77 LINK SG CYS A 122 CAC HEC A 501 1555 1555 1.76 LINK SG CYS A 157 CAB HEC A 502 1555 1555 1.77 LINK SG CYS A 160 CAC HEC A 502 1555 1555 1.77 LINK SG CYS A 199 CAB HEC A 503 1555 1555 1.76 LINK SG CYS A 202 CAC HEC A 503 1555 1555 1.77 LINK SG CYS A 275 CAB HEC A 504 1555 1555 1.76 LINK SG CYS A 278 CAC HEC A 504 1555 1555 1.76 LINK SG CYS A 307 CAB HEC A 505 1555 1555 1.77 LINK SG CYS A 310 CAC HEC A 505 1555 1555 1.76 LINK SG CYS B 119 CAB HEC B 501 1555 1555 1.77 LINK SG CYS B 122 CAC HEC B 501 1555 1555 1.77 LINK SG CYS B 157 CAB HEC B 502 1555 1555 1.77 LINK SG CYS B 160 CAC HEC B 502 1555 1555 1.77 LINK SG CYS B 199 CAB HEC B 503 1555 1555 1.77 LINK SG CYS B 202 CAC HEC B 503 1555 1555 1.77 LINK SG CYS B 275 CAB HEC B 504 1555 1555 1.76 LINK SG CYS B 307 CAB HEC B 505 1555 1555 1.77 LINK SG CYS B 310 CAC HEC B 505 1555 1555 1.77 LINK NE2 HIS A 91 FE HEC A 503 1555 1555 2.56 LINK NE2 HIS A 161 FE HEC A 502 1555 1555 2.35 LINK NE2 HIS A 203 FE HEC A 503 1555 1555 1.86 LINK OE2 GLU A 205 CA CA A 506 1555 1555 3.04 LINK OD1 ASP A 242 CA CA A 506 1555 1555 3.10 LINK OD2 ASP A 242 CA CA A 506 1555 1555 3.03 LINK O LYS A 254 CA CA A 506 1555 1555 3.07 LINK NE2 HIS A 268 FE HEC A 505 1555 1555 2.66 LINK NE2 HIS A 279 FE HEC A 504 1555 1555 2.22 LINK NE2 HIS A 294 FE HEC A 502 1555 1555 1.93 LINK NE2 HIS A 311 FE HEC A 505 1555 1555 1.99 LINK NE2 HIS A 386 FE HEC A 504 1555 1555 2.47 LINK NE2 HIS B 91 FE HEC B 503 1555 1555 2.46 LINK NE2 HIS B 161 FE HEC B 502 1555 1555 2.58 LINK NE2 HIS B 203 FE HEC B 503 1555 1555 2.10 LINK O TYR B 206 CA CA B 506 1555 1555 2.45 LINK OH TYR B 235 CA CA B 506 1555 1555 3.19 LINK O LYS B 254 CA CA B 506 1555 1555 2.98 LINK NE2 HIS B 279 FE HEC B 504 1555 1555 2.56 LINK NE2 HIS B 294 FE HEC B 502 1555 1555 2.37 LINK NE2 HIS B 311 FE HEC B 505 1555 1555 2.47 LINK NE2 HIS B 386 FE HEC B 504 1555 1555 1.99 CISPEP 1 MET A 224 GLY A 225 0 -3.23 CRYST1 50.840 95.470 228.200 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019670 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004382 0.00000