data_9CWP # _entry.id 9CWP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.409 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9CWP pdb_00009cwp 10.2210/pdb9cwp/pdb WWPDB D_1000286435 ? ? EMDB EMD-45969 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-01-21 ? 2 'EM metadata' 1 0 2026-01-21 ? 3 'Additional map' 1 0 2026-01-21 1 4 'Half map' 1 0 2026-01-21 1 5 'Half map' 1 0 2026-01-21 2 6 Image 1 0 2026-01-21 ? 7 'Primary map' 1 0 2026-01-21 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Additional map' repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9CWP _pdbx_database_status.recvd_initial_deposition_date 2024-07-29 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Local refinement of the SARS-CoV-2 BA.2.86 RBD in complex with TRI2-2 minibinder' _pdbx_database_related.db_id EMD-45969 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email dveesler@uw.edu _pdbx_contact_author.name_first David _pdbx_contact_author.name_last Veesler _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-6019-8675 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lee, J.' 1 ? 'Veesler, D.' 2 ? 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Commun Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2399-3642 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'The computationally designed TRI2-2 miniprotein inhibitor protects against multiple SARS-CoV-2 Omicron variants.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s42003-025-09499-2 _citation.pdbx_database_id_PubMed 41519898 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lee, J.' 1 ? primary 'Case, J.B.' 2 0000-0001-7331-5511 primary 'Park, Y.J.' 3 0000-0003-2901-6949 primary 'Ravichandran, R.' 4 ? primary 'Asarnow, D.' 5 0000-0001-7870-5308 primary 'Tortorici, M.A.' 6 0000-0002-2260-2577 primary 'Brown, J.T.' 7 ? primary 'Sanapala, S.' 8 ? primary 'Carter, L.' 9 ? primary 'Baker, D.' 10 0000-0001-7896-6217 primary 'Diamond, M.S.' 11 0000-0002-8791-3165 primary 'Veesler, D.' 12 0000-0002-6019-8675 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'BA.2.86 spike protein RBD' 21958.820 1 ? ? ? ? 2 polymer man 'Pan-variant miniprotein TRI2-2' 17565.787 1 ? ? ? ? 3 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;NLCPFHEVFNATRFASVYAWNRTRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIKGNEVSQIAPG QTGNIADYNYKLPDDFTGCVIAWNSNKLDSKHSGNYDYWYRLFRKSKLKPFERDISTEIYQAGNKPCKGKGPNCYFPLQS YGFRPTYGVGHQPYRVVVLSFELLHAPATVCGP ; ;NLCPFHEVFNATRFASVYAWNRTRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIKGNEVSQIAPG QTGNIADYNYKLPDDFTGCVIAWNSNKLDSKHSGNYDYWYRLFRKSKLKPFERDISTEIYQAGNKPCKGKGPNCYFPLQS YGFRPTYGVGHQPYRVVVLSFELLHAPATVCGP ; C ? 2 'polypeptide(L)' no no ;ELEEQVMHVLDQVSELAHELLHKLTGEELERAAYFNWWATEMMLELIKSDDEREIREIEEEARRILEHLEELARKGGSEA LEELEKALRELKKSTDELERSTEELEKNPSEDALVENNRLIVENNKIIVEVLRIIAKVLKLEHHHHHH ; ;ELEEQVMHVLDQVSELAHELLHKLTGEELERAAYFNWWATEMMLELIKSDDEREIREIEEEARRILEHLEELARKGGSEA LEELEKALRELKKSTDELERSTEELEKNPSEDALVENNRLIVENNKIIVEVLRIIAKVLKLEHHHHHH ; K ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 LEU n 1 3 CYS n 1 4 PRO n 1 5 PHE n 1 6 HIS n 1 7 GLU n 1 8 VAL n 1 9 PHE n 1 10 ASN n 1 11 ALA n 1 12 THR n 1 13 ARG n 1 14 PHE n 1 15 ALA n 1 16 SER n 1 17 VAL n 1 18 TYR n 1 19 ALA n 1 20 TRP n 1 21 ASN n 1 22 ARG n 1 23 THR n 1 24 ARG n 1 25 ILE n 1 26 SER n 1 27 ASN n 1 28 CYS n 1 29 VAL n 1 30 ALA n 1 31 ASP n 1 32 TYR n 1 33 SER n 1 34 VAL n 1 35 LEU n 1 36 TYR n 1 37 ASN n 1 38 PHE n 1 39 ALA n 1 40 PRO n 1 41 PHE n 1 42 PHE n 1 43 ALA n 1 44 PHE n 1 45 LYS n 1 46 CYS n 1 47 TYR n 1 48 GLY n 1 49 VAL n 1 50 SER n 1 51 PRO n 1 52 THR n 1 53 LYS n 1 54 LEU n 1 55 ASN n 1 56 ASP n 1 57 LEU n 1 58 CYS n 1 59 PHE n 1 60 THR n 1 61 ASN n 1 62 VAL n 1 63 TYR n 1 64 ALA n 1 65 ASP n 1 66 SER n 1 67 PHE n 1 68 VAL n 1 69 ILE n 1 70 LYS n 1 71 GLY n 1 72 ASN n 1 73 GLU n 1 74 VAL n 1 75 SER n 1 76 GLN n 1 77 ILE n 1 78 ALA n 1 79 PRO n 1 80 GLY n 1 81 GLN n 1 82 THR n 1 83 GLY n 1 84 ASN n 1 85 ILE n 1 86 ALA n 1 87 ASP n 1 88 TYR n 1 89 ASN n 1 90 TYR n 1 91 LYS n 1 92 LEU n 1 93 PRO n 1 94 ASP n 1 95 ASP n 1 96 PHE n 1 97 THR n 1 98 GLY n 1 99 CYS n 1 100 VAL n 1 101 ILE n 1 102 ALA n 1 103 TRP n 1 104 ASN n 1 105 SER n 1 106 ASN n 1 107 LYS n 1 108 LEU n 1 109 ASP n 1 110 SER n 1 111 LYS n 1 112 HIS n 1 113 SER n 1 114 GLY n 1 115 ASN n 1 116 TYR n 1 117 ASP n 1 118 TYR n 1 119 TRP n 1 120 TYR n 1 121 ARG n 1 122 LEU n 1 123 PHE n 1 124 ARG n 1 125 LYS n 1 126 SER n 1 127 LYS n 1 128 LEU n 1 129 LYS n 1 130 PRO n 1 131 PHE n 1 132 GLU n 1 133 ARG n 1 134 ASP n 1 135 ILE n 1 136 SER n 1 137 THR n 1 138 GLU n 1 139 ILE n 1 140 TYR n 1 141 GLN n 1 142 ALA n 1 143 GLY n 1 144 ASN n 1 145 LYS n 1 146 PRO n 1 147 CYS n 1 148 LYS n 1 149 GLY n 1 150 LYS n 1 151 GLY n 1 152 PRO n 1 153 ASN n 1 154 CYS n 1 155 TYR n 1 156 PHE n 1 157 PRO n 1 158 LEU n 1 159 GLN n 1 160 SER n 1 161 TYR n 1 162 GLY n 1 163 PHE n 1 164 ARG n 1 165 PRO n 1 166 THR n 1 167 TYR n 1 168 GLY n 1 169 VAL n 1 170 GLY n 1 171 HIS n 1 172 GLN n 1 173 PRO n 1 174 TYR n 1 175 ARG n 1 176 VAL n 1 177 VAL n 1 178 VAL n 1 179 LEU n 1 180 SER n 1 181 PHE n 1 182 GLU n 1 183 LEU n 1 184 LEU n 1 185 HIS n 1 186 ALA n 1 187 PRO n 1 188 ALA n 1 189 THR n 1 190 VAL n 1 191 CYS n 1 192 GLY n 1 193 PRO n 2 1 GLU n 2 2 LEU n 2 3 GLU n 2 4 GLU n 2 5 GLN n 2 6 VAL n 2 7 MET n 2 8 HIS n 2 9 VAL n 2 10 LEU n 2 11 ASP n 2 12 GLN n 2 13 VAL n 2 14 SER n 2 15 GLU n 2 16 LEU n 2 17 ALA n 2 18 HIS n 2 19 GLU n 2 20 LEU n 2 21 LEU n 2 22 HIS n 2 23 LYS n 2 24 LEU n 2 25 THR n 2 26 GLY n 2 27 GLU n 2 28 GLU n 2 29 LEU n 2 30 GLU n 2 31 ARG n 2 32 ALA n 2 33 ALA n 2 34 TYR n 2 35 PHE n 2 36 ASN n 2 37 TRP n 2 38 TRP n 2 39 ALA n 2 40 THR n 2 41 GLU n 2 42 MET n 2 43 MET n 2 44 LEU n 2 45 GLU n 2 46 LEU n 2 47 ILE n 2 48 LYS n 2 49 SER n 2 50 ASP n 2 51 ASP n 2 52 GLU n 2 53 ARG n 2 54 GLU n 2 55 ILE n 2 56 ARG n 2 57 GLU n 2 58 ILE n 2 59 GLU n 2 60 GLU n 2 61 GLU n 2 62 ALA n 2 63 ARG n 2 64 ARG n 2 65 ILE n 2 66 LEU n 2 67 GLU n 2 68 HIS n 2 69 LEU n 2 70 GLU n 2 71 GLU n 2 72 LEU n 2 73 ALA n 2 74 ARG n 2 75 LYS n 2 76 GLY n 2 77 GLY n 2 78 SER n 2 79 GLU n 2 80 ALA n 2 81 LEU n 2 82 GLU n 2 83 GLU n 2 84 LEU n 2 85 GLU n 2 86 LYS n 2 87 ALA n 2 88 LEU n 2 89 ARG n 2 90 GLU n 2 91 LEU n 2 92 LYS n 2 93 LYS n 2 94 SER n 2 95 THR n 2 96 ASP n 2 97 GLU n 2 98 LEU n 2 99 GLU n 2 100 ARG n 2 101 SER n 2 102 THR n 2 103 GLU n 2 104 GLU n 2 105 LEU n 2 106 GLU n 2 107 LYS n 2 108 ASN n 2 109 PRO n 2 110 SER n 2 111 GLU n 2 112 ASP n 2 113 ALA n 2 114 LEU n 2 115 VAL n 2 116 GLU n 2 117 ASN n 2 118 ASN n 2 119 ARG n 2 120 LEU n 2 121 ILE n 2 122 VAL n 2 123 GLU n 2 124 ASN n 2 125 ASN n 2 126 LYS n 2 127 ILE n 2 128 ILE n 2 129 VAL n 2 130 GLU n 2 131 VAL n 2 132 LEU n 2 133 ARG n 2 134 ILE n 2 135 ILE n 2 136 ALA n 2 137 LYS n 2 138 VAL n 2 139 LEU n 2 140 LYS n 2 141 LEU n 2 142 GLU n 2 143 HIS n 2 144 HIS n 2 145 HIS n 2 146 HIS n 2 147 HIS n 2 148 HIS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 193 '2019-nCoV, SARS-CoV-2' ? ? ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 148 ? ? ? ? ? ? ? ? ? 'synthetic construct' 32630 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 334 334 ASN ASN C . n A 1 2 LEU 2 335 335 LEU LEU C . n A 1 3 CYS 3 336 336 CYS CYS C . n A 1 4 PRO 4 337 337 PRO PRO C . n A 1 5 PHE 5 338 338 PHE PHE C . n A 1 6 HIS 6 339 339 HIS HIS C . n A 1 7 GLU 7 340 340 GLU GLU C . n A 1 8 VAL 8 341 341 VAL VAL C . n A 1 9 PHE 9 342 342 PHE PHE C . n A 1 10 ASN 10 343 343 ASN ASN C . n A 1 11 ALA 11 344 344 ALA ALA C . n A 1 12 THR 12 345 345 THR THR C . n A 1 13 ARG 13 346 346 ARG ARG C . n A 1 14 PHE 14 347 347 PHE PHE C . n A 1 15 ALA 15 348 348 ALA ALA C . n A 1 16 SER 16 349 349 SER SER C . n A 1 17 VAL 17 350 350 VAL VAL C . n A 1 18 TYR 18 351 351 TYR TYR C . n A 1 19 ALA 19 352 352 ALA ALA C . n A 1 20 TRP 20 353 353 TRP TRP C . n A 1 21 ASN 21 354 354 ASN ASN C . n A 1 22 ARG 22 355 355 ARG ARG C . n A 1 23 THR 23 356 356 THR THR C . n A 1 24 ARG 24 357 357 ARG ARG C . n A 1 25 ILE 25 358 358 ILE ILE C . n A 1 26 SER 26 359 359 SER SER C . n A 1 27 ASN 27 360 360 ASN ASN C . n A 1 28 CYS 28 361 361 CYS CYS C . n A 1 29 VAL 29 362 362 VAL VAL C . n A 1 30 ALA 30 363 363 ALA ALA C . n A 1 31 ASP 31 364 364 ASP ASP C . n A 1 32 TYR 32 365 365 TYR TYR C . n A 1 33 SER 33 366 366 SER SER C . n A 1 34 VAL 34 367 367 VAL VAL C . n A 1 35 LEU 35 368 368 LEU LEU C . n A 1 36 TYR 36 369 369 TYR TYR C . n A 1 37 ASN 37 370 370 ASN ASN C . n A 1 38 PHE 38 371 371 PHE PHE C . n A 1 39 ALA 39 372 372 ALA ALA C . n A 1 40 PRO 40 373 373 PRO PRO C . n A 1 41 PHE 41 374 374 PHE PHE C . n A 1 42 PHE 42 375 375 PHE PHE C . n A 1 43 ALA 43 376 376 ALA ALA C . n A 1 44 PHE 44 377 377 PHE PHE C . n A 1 45 LYS 45 378 378 LYS LYS C . n A 1 46 CYS 46 379 379 CYS CYS C . n A 1 47 TYR 47 380 380 TYR TYR C . n A 1 48 GLY 48 381 381 GLY GLY C . n A 1 49 VAL 49 382 382 VAL VAL C . n A 1 50 SER 50 383 383 SER SER C . n A 1 51 PRO 51 384 384 PRO PRO C . n A 1 52 THR 52 385 385 THR THR C . n A 1 53 LYS 53 386 386 LYS LYS C . n A 1 54 LEU 54 387 387 LEU LEU C . n A 1 55 ASN 55 388 388 ASN ASN C . n A 1 56 ASP 56 389 389 ASP ASP C . n A 1 57 LEU 57 390 390 LEU LEU C . n A 1 58 CYS 58 391 391 CYS CYS C . n A 1 59 PHE 59 392 392 PHE PHE C . n A 1 60 THR 60 393 393 THR THR C . n A 1 61 ASN 61 394 394 ASN ASN C . n A 1 62 VAL 62 395 395 VAL VAL C . n A 1 63 TYR 63 396 396 TYR TYR C . n A 1 64 ALA 64 397 397 ALA ALA C . n A 1 65 ASP 65 398 398 ASP ASP C . n A 1 66 SER 66 399 399 SER SER C . n A 1 67 PHE 67 400 400 PHE PHE C . n A 1 68 VAL 68 401 401 VAL VAL C . n A 1 69 ILE 69 402 402 ILE ILE C . n A 1 70 LYS 70 403 403 LYS LYS C . n A 1 71 GLY 71 404 404 GLY GLY C . n A 1 72 ASN 72 405 405 ASN ASN C . n A 1 73 GLU 73 406 406 GLU GLU C . n A 1 74 VAL 74 407 407 VAL VAL C . n A 1 75 SER 75 408 408 SER SER C . n A 1 76 GLN 76 409 409 GLN GLN C . n A 1 77 ILE 77 410 410 ILE ILE C . n A 1 78 ALA 78 411 411 ALA ALA C . n A 1 79 PRO 79 412 412 PRO PRO C . n A 1 80 GLY 80 413 413 GLY GLY C . n A 1 81 GLN 81 414 414 GLN GLN C . n A 1 82 THR 82 415 415 THR THR C . n A 1 83 GLY 83 416 416 GLY GLY C . n A 1 84 ASN 84 417 417 ASN ASN C . n A 1 85 ILE 85 418 418 ILE ILE C . n A 1 86 ALA 86 419 419 ALA ALA C . n A 1 87 ASP 87 420 420 ASP ASP C . n A 1 88 TYR 88 421 421 TYR TYR C . n A 1 89 ASN 89 422 422 ASN ASN C . n A 1 90 TYR 90 423 423 TYR TYR C . n A 1 91 LYS 91 424 424 LYS LYS C . n A 1 92 LEU 92 425 425 LEU LEU C . n A 1 93 PRO 93 426 426 PRO PRO C . n A 1 94 ASP 94 427 427 ASP ASP C . n A 1 95 ASP 95 428 428 ASP ASP C . n A 1 96 PHE 96 429 429 PHE PHE C . n A 1 97 THR 97 430 430 THR THR C . n A 1 98 GLY 98 431 431 GLY GLY C . n A 1 99 CYS 99 432 432 CYS CYS C . n A 1 100 VAL 100 433 433 VAL VAL C . n A 1 101 ILE 101 434 434 ILE ILE C . n A 1 102 ALA 102 435 435 ALA ALA C . n A 1 103 TRP 103 436 436 TRP TRP C . n A 1 104 ASN 104 437 437 ASN ASN C . n A 1 105 SER 105 438 438 SER SER C . n A 1 106 ASN 106 439 439 ASN ASN C . n A 1 107 LYS 107 440 440 LYS LYS C . n A 1 108 LEU 108 441 441 LEU LEU C . n A 1 109 ASP 109 442 442 ASP ASP C . n A 1 110 SER 110 443 443 SER SER C . n A 1 111 LYS 111 444 444 LYS LYS C . n A 1 112 HIS 112 445 445 HIS HIS C . n A 1 113 SER 113 446 446 SER SER C . n A 1 114 GLY 114 447 447 GLY GLY C . n A 1 115 ASN 115 448 448 ASN ASN C . n A 1 116 TYR 116 449 449 TYR TYR C . n A 1 117 ASP 117 450 450 ASP ASP C . n A 1 118 TYR 118 451 451 TYR TYR C . n A 1 119 TRP 119 452 452 TRP TRP C . n A 1 120 TYR 120 453 453 TYR TYR C . n A 1 121 ARG 121 454 454 ARG ARG C . n A 1 122 LEU 122 455 455 LEU LEU C . n A 1 123 PHE 123 456 456 PHE PHE C . n A 1 124 ARG 124 457 457 ARG ARG C . n A 1 125 LYS 125 458 458 LYS LYS C . n A 1 126 SER 126 459 459 SER SER C . n A 1 127 LYS 127 460 460 LYS LYS C . n A 1 128 LEU 128 461 461 LEU LEU C . n A 1 129 LYS 129 462 462 LYS LYS C . n A 1 130 PRO 130 463 463 PRO PRO C . n A 1 131 PHE 131 464 464 PHE PHE C . n A 1 132 GLU 132 465 465 GLU GLU C . n A 1 133 ARG 133 466 466 ARG ARG C . n A 1 134 ASP 134 467 467 ASP ASP C . n A 1 135 ILE 135 468 468 ILE ILE C . n A 1 136 SER 136 469 469 SER SER C . n A 1 137 THR 137 470 470 THR THR C . n A 1 138 GLU 138 471 471 GLU GLU C . n A 1 139 ILE 139 472 472 ILE ILE C . n A 1 140 TYR 140 473 473 TYR TYR C . n A 1 141 GLN 141 474 474 GLN GLN C . n A 1 142 ALA 142 475 475 ALA ALA C . n A 1 143 GLY 143 476 476 GLY GLY C . n A 1 144 ASN 144 477 477 ASN ASN C . n A 1 145 LYS 145 478 478 LYS LYS C . n A 1 146 PRO 146 479 479 PRO PRO C . n A 1 147 CYS 147 480 480 CYS CYS C . n A 1 148 LYS 148 481 481 LYS LYS C . n A 1 149 GLY 149 482 482 GLY GLY C . n A 1 150 LYS 150 484 484 LYS LYS C . n A 1 151 GLY 151 485 485 GLY GLY C . n A 1 152 PRO 152 486 486 PRO PRO C . n A 1 153 ASN 153 487 487 ASN ASN C . n A 1 154 CYS 154 488 488 CYS CYS C . n A 1 155 TYR 155 489 489 TYR TYR C . n A 1 156 PHE 156 490 490 PHE PHE C . n A 1 157 PRO 157 491 491 PRO PRO C . n A 1 158 LEU 158 492 492 LEU LEU C . n A 1 159 GLN 159 493 493 GLN GLN C . n A 1 160 SER 160 494 494 SER SER C . n A 1 161 TYR 161 495 495 TYR TYR C . n A 1 162 GLY 162 496 496 GLY GLY C . n A 1 163 PHE 163 497 497 PHE PHE C . n A 1 164 ARG 164 498 498 ARG ARG C . n A 1 165 PRO 165 499 499 PRO PRO C . n A 1 166 THR 166 500 500 THR THR C . n A 1 167 TYR 167 501 501 TYR TYR C . n A 1 168 GLY 168 502 502 GLY GLY C . n A 1 169 VAL 169 503 503 VAL VAL C . n A 1 170 GLY 170 504 504 GLY GLY C . n A 1 171 HIS 171 505 505 HIS HIS C . n A 1 172 GLN 172 506 506 GLN GLN C . n A 1 173 PRO 173 507 507 PRO PRO C . n A 1 174 TYR 174 508 508 TYR TYR C . n A 1 175 ARG 175 509 509 ARG ARG C . n A 1 176 VAL 176 510 510 VAL VAL C . n A 1 177 VAL 177 511 511 VAL VAL C . n A 1 178 VAL 178 512 512 VAL VAL C . n A 1 179 LEU 179 513 513 LEU LEU C . n A 1 180 SER 180 514 514 SER SER C . n A 1 181 PHE 181 515 515 PHE PHE C . n A 1 182 GLU 182 516 516 GLU GLU C . n A 1 183 LEU 183 517 517 LEU LEU C . n A 1 184 LEU 184 518 518 LEU LEU C . n A 1 185 HIS 185 519 519 HIS HIS C . n A 1 186 ALA 186 520 520 ALA ALA C . n A 1 187 PRO 187 521 521 PRO PRO C . n A 1 188 ALA 188 522 522 ALA ALA C . n A 1 189 THR 189 523 523 THR THR C . n A 1 190 VAL 190 524 524 VAL VAL C . n A 1 191 CYS 191 525 525 CYS CYS C . n A 1 192 GLY 192 526 526 GLY GLY C . n A 1 193 PRO 193 527 527 PRO PRO C . n B 2 1 GLU 1 1 1 GLU GLU K . n B 2 2 LEU 2 2 2 LEU LEU K . n B 2 3 GLU 3 3 3 GLU GLU K . n B 2 4 GLU 4 4 4 GLU GLU K . n B 2 5 GLN 5 5 5 GLN GLN K . n B 2 6 VAL 6 6 6 VAL VAL K . n B 2 7 MET 7 7 7 MET MET K . n B 2 8 HIS 8 8 8 HIS HIS K . n B 2 9 VAL 9 9 9 VAL VAL K . n B 2 10 LEU 10 10 10 LEU LEU K . n B 2 11 ASP 11 11 11 ASP ASP K . n B 2 12 GLN 12 12 12 GLN GLN K . n B 2 13 VAL 13 13 13 VAL VAL K . n B 2 14 SER 14 14 14 SER SER K . n B 2 15 GLU 15 15 15 GLU GLU K . n B 2 16 LEU 16 16 16 LEU LEU K . n B 2 17 ALA 17 17 17 ALA ALA K . n B 2 18 HIS 18 18 18 HIS HIS K . n B 2 19 GLU 19 19 19 GLU GLU K . n B 2 20 LEU 20 20 20 LEU LEU K . n B 2 21 LEU 21 21 21 LEU LEU K . n B 2 22 HIS 22 22 22 HIS HIS K . n B 2 23 LYS 23 23 23 LYS LYS K . n B 2 24 LEU 24 24 24 LEU LEU K . n B 2 25 THR 25 25 25 THR THR K . n B 2 26 GLY 26 26 26 GLY GLY K . n B 2 27 GLU 27 27 27 GLU GLU K . n B 2 28 GLU 28 28 28 GLU GLU K . n B 2 29 LEU 29 29 29 LEU LEU K . n B 2 30 GLU 30 30 30 GLU GLU K . n B 2 31 ARG 31 31 31 ARG ARG K . n B 2 32 ALA 32 32 32 ALA ALA K . n B 2 33 ALA 33 33 33 ALA ALA K . n B 2 34 TYR 34 34 34 TYR TYR K . n B 2 35 PHE 35 35 35 PHE PHE K . n B 2 36 ASN 36 36 36 ASN ASN K . n B 2 37 TRP 37 37 37 TRP TRP K . n B 2 38 TRP 38 38 38 TRP TRP K . n B 2 39 ALA 39 39 39 ALA ALA K . n B 2 40 THR 40 40 40 THR THR K . n B 2 41 GLU 41 41 41 GLU GLU K . n B 2 42 MET 42 42 42 MET MET K . n B 2 43 MET 43 43 43 MET MET K . n B 2 44 LEU 44 44 44 LEU LEU K . n B 2 45 GLU 45 45 45 GLU GLU K . n B 2 46 LEU 46 46 46 LEU LEU K . n B 2 47 ILE 47 47 47 ILE ILE K . n B 2 48 LYS 48 48 48 LYS LYS K . n B 2 49 SER 49 49 49 SER SER K . n B 2 50 ASP 50 50 50 ASP ASP K . n B 2 51 ASP 51 51 51 ASP ASP K . n B 2 52 GLU 52 52 52 GLU GLU K . n B 2 53 ARG 53 53 53 ARG ARG K . n B 2 54 GLU 54 54 54 GLU GLU K . n B 2 55 ILE 55 55 55 ILE ILE K . n B 2 56 ARG 56 56 56 ARG ARG K . n B 2 57 GLU 57 57 57 GLU GLU K . n B 2 58 ILE 58 58 58 ILE ILE K . n B 2 59 GLU 59 59 59 GLU GLU K . n B 2 60 GLU 60 60 60 GLU GLU K . n B 2 61 GLU 61 61 61 GLU GLU K . n B 2 62 ALA 62 62 62 ALA ALA K . n B 2 63 ARG 63 63 63 ARG ARG K . n B 2 64 ARG 64 64 64 ARG ARG K . n B 2 65 ILE 65 65 65 ILE ILE K . n B 2 66 LEU 66 66 66 LEU LEU K . n B 2 67 GLU 67 67 67 GLU GLU K . n B 2 68 HIS 68 68 68 HIS HIS K . n B 2 69 LEU 69 69 69 LEU LEU K . n B 2 70 GLU 70 70 70 GLU GLU K . n B 2 71 GLU 71 71 ? ? ? K . n B 2 72 LEU 72 72 ? ? ? K . n B 2 73 ALA 73 73 ? ? ? K . n B 2 74 ARG 74 74 ? ? ? K . n B 2 75 LYS 75 75 ? ? ? K . n B 2 76 GLY 76 76 ? ? ? K . n B 2 77 GLY 77 77 ? ? ? K . n B 2 78 SER 78 78 ? ? ? K . n B 2 79 GLU 79 79 ? ? ? K . n B 2 80 ALA 80 80 ? ? ? K . n B 2 81 LEU 81 81 ? ? ? K . n B 2 82 GLU 82 82 ? ? ? K . n B 2 83 GLU 83 83 ? ? ? K . n B 2 84 LEU 84 84 ? ? ? K . n B 2 85 GLU 85 85 ? ? ? K . n B 2 86 LYS 86 86 ? ? ? K . n B 2 87 ALA 87 87 ? ? ? K . n B 2 88 LEU 88 88 ? ? ? K . n B 2 89 ARG 89 89 ? ? ? K . n B 2 90 GLU 90 90 ? ? ? K . n B 2 91 LEU 91 91 ? ? ? K . n B 2 92 LYS 92 92 ? ? ? K . n B 2 93 LYS 93 93 ? ? ? K . n B 2 94 SER 94 94 ? ? ? K . n B 2 95 THR 95 95 ? ? ? K . n B 2 96 ASP 96 96 ? ? ? K . n B 2 97 GLU 97 97 ? ? ? K . n B 2 98 LEU 98 98 ? ? ? K . n B 2 99 GLU 99 99 ? ? ? K . n B 2 100 ARG 100 100 ? ? ? K . n B 2 101 SER 101 101 ? ? ? K . n B 2 102 THR 102 102 ? ? ? K . n B 2 103 GLU 103 103 ? ? ? K . n B 2 104 GLU 104 104 ? ? ? K . n B 2 105 LEU 105 105 ? ? ? K . n B 2 106 GLU 106 106 ? ? ? K . n B 2 107 LYS 107 107 ? ? ? K . n B 2 108 ASN 108 108 ? ? ? K . n B 2 109 PRO 109 109 ? ? ? K . n B 2 110 SER 110 110 ? ? ? K . n B 2 111 GLU 111 111 ? ? ? K . n B 2 112 ASP 112 112 ? ? ? K . n B 2 113 ALA 113 113 ? ? ? K . n B 2 114 LEU 114 114 ? ? ? K . n B 2 115 VAL 115 115 ? ? ? K . n B 2 116 GLU 116 116 ? ? ? K . n B 2 117 ASN 117 117 ? ? ? K . n B 2 118 ASN 118 118 ? ? ? K . n B 2 119 ARG 119 119 ? ? ? K . n B 2 120 LEU 120 120 ? ? ? K . n B 2 121 ILE 121 121 ? ? ? K . n B 2 122 VAL 122 122 ? ? ? K . n B 2 123 GLU 123 123 ? ? ? K . n B 2 124 ASN 124 124 ? ? ? K . n B 2 125 ASN 125 125 ? ? ? K . n B 2 126 LYS 126 126 ? ? ? K . n B 2 127 ILE 127 127 ? ? ? K . n B 2 128 ILE 128 128 ? ? ? K . n B 2 129 VAL 129 129 ? ? ? K . n B 2 130 GLU 130 130 ? ? ? K . n B 2 131 VAL 131 131 ? ? ? K . n B 2 132 LEU 132 132 ? ? ? K . n B 2 133 ARG 133 133 ? ? ? K . n B 2 134 ILE 134 134 ? ? ? K . n B 2 135 ILE 135 135 ? ? ? K . n B 2 136 ALA 136 136 ? ? ? K . n B 2 137 LYS 137 137 ? ? ? K . n B 2 138 VAL 138 138 ? ? ? K . n B 2 139 LEU 139 139 ? ? ? K . n B 2 140 LYS 140 140 ? ? ? K . n B 2 141 LEU 141 141 ? ? ? K . n B 2 142 GLU 142 142 ? ? ? K . n B 2 143 HIS 143 143 ? ? ? K . n B 2 144 HIS 144 144 ? ? ? K . n B 2 145 HIS 145 145 ? ? ? K . n B 2 146 HIS 146 146 ? ? ? K . n B 2 147 HIS 147 147 ? ? ? K . n B 2 148 HIS 148 148 ? ? ? K . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 601 528 NAG NAG C . D 3 NAG 1 602 529 NAG NAG C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C GLU 340 ? CG ? A GLU 7 CG 2 1 Y 1 C GLU 340 ? CD ? A GLU 7 CD 3 1 Y 1 C GLU 340 ? OE1 ? A GLU 7 OE1 4 1 Y 1 C GLU 340 ? OE2 ? A GLU 7 OE2 5 1 Y 1 C SER 349 ? OG ? A SER 16 OG 6 1 Y 1 C SER 366 ? OG ? A SER 33 OG 7 1 Y 1 C VAL 382 ? CG1 ? A VAL 49 CG1 8 1 Y 1 C VAL 382 ? CG2 ? A VAL 49 CG2 9 1 Y 1 C THR 385 ? OG1 ? A THR 52 OG1 10 1 Y 1 C THR 385 ? CG2 ? A THR 52 CG2 11 1 Y 1 C SER 408 ? OG ? A SER 75 OG 12 1 Y 1 C THR 415 ? OG1 ? A THR 82 OG1 13 1 Y 1 C THR 415 ? CG2 ? A THR 82 CG2 14 1 Y 1 C ASP 428 ? CG ? A ASP 95 CG 15 1 Y 1 C ASP 428 ? OD1 ? A ASP 95 OD1 16 1 Y 1 C ASP 428 ? OD2 ? A ASP 95 OD2 17 1 Y 1 C THR 430 ? OG1 ? A THR 97 OG1 18 1 Y 1 C THR 430 ? CG2 ? A THR 97 CG2 19 1 Y 1 C SER 446 ? OG ? A SER 113 OG 20 1 Y 1 C LYS 458 ? CG ? A LYS 125 CG 21 1 Y 1 C LYS 458 ? CD ? A LYS 125 CD 22 1 Y 1 C LYS 458 ? CE ? A LYS 125 CE 23 1 Y 1 C LYS 458 ? NZ ? A LYS 125 NZ 24 1 Y 1 C SER 459 ? OG ? A SER 126 OG 25 1 Y 1 C LYS 462 ? CG ? A LYS 129 CG 26 1 Y 1 C LYS 462 ? CD ? A LYS 129 CD 27 1 Y 1 C LYS 462 ? CE ? A LYS 129 CE 28 1 Y 1 C LYS 462 ? NZ ? A LYS 129 NZ 29 1 Y 1 C THR 470 ? OG1 ? A THR 137 OG1 30 1 Y 1 C THR 470 ? CG2 ? A THR 137 CG2 31 1 Y 1 C ASN 477 ? CG ? A ASN 144 CG 32 1 Y 1 C ASN 477 ? OD1 ? A ASN 144 OD1 33 1 Y 1 C ASN 477 ? ND2 ? A ASN 144 ND2 34 1 Y 1 C LYS 478 ? CG ? A LYS 145 CG 35 1 Y 1 C LYS 478 ? CD ? A LYS 145 CD 36 1 Y 1 C LYS 478 ? CE ? A LYS 145 CE 37 1 Y 1 C LYS 478 ? NZ ? A LYS 145 NZ 38 1 Y 1 C LYS 481 ? CG ? A LYS 148 CG 39 1 Y 1 C LYS 481 ? CD ? A LYS 148 CD 40 1 Y 1 C LYS 481 ? CE ? A LYS 148 CE 41 1 Y 1 C LYS 481 ? NZ ? A LYS 148 NZ 42 1 Y 1 C LYS 484 ? CG ? A LYS 150 CG 43 1 Y 1 C LYS 484 ? CD ? A LYS 150 CD 44 1 Y 1 C LYS 484 ? CE ? A LYS 150 CE 45 1 Y 1 C LYS 484 ? NZ ? A LYS 150 NZ 46 1 Y 1 C SER 494 ? OG ? A SER 160 OG 47 1 Y 1 C THR 500 ? OG1 ? A THR 166 OG1 48 1 Y 1 C THR 500 ? CG2 ? A THR 166 CG2 49 1 Y 1 C LEU 517 ? CG ? A LEU 183 CG 50 1 Y 1 C LEU 517 ? CD1 ? A LEU 183 CD1 51 1 Y 1 C LEU 517 ? CD2 ? A LEU 183 CD2 52 1 Y 1 C HIS 519 ? CG ? A HIS 185 CG 53 1 Y 1 C HIS 519 ? ND1 ? A HIS 185 ND1 54 1 Y 1 C HIS 519 ? CD2 ? A HIS 185 CD2 55 1 Y 1 C HIS 519 ? CE1 ? A HIS 185 CE1 56 1 Y 1 C HIS 519 ? NE2 ? A HIS 185 NE2 57 1 Y 1 K GLU 1 ? CG ? B GLU 1 CG 58 1 Y 1 K GLU 1 ? CD ? B GLU 1 CD 59 1 Y 1 K GLU 1 ? OE1 ? B GLU 1 OE1 60 1 Y 1 K GLU 1 ? OE2 ? B GLU 1 OE2 61 1 Y 1 K GLU 3 ? CG ? B GLU 3 CG 62 1 Y 1 K GLU 3 ? CD ? B GLU 3 CD 63 1 Y 1 K GLU 3 ? OE1 ? B GLU 3 OE1 64 1 Y 1 K GLU 3 ? OE2 ? B GLU 3 OE2 65 1 Y 1 K GLN 5 ? CG ? B GLN 5 CG 66 1 Y 1 K GLN 5 ? CD ? B GLN 5 CD 67 1 Y 1 K GLN 5 ? OE1 ? B GLN 5 OE1 68 1 Y 1 K GLN 5 ? NE2 ? B GLN 5 NE2 69 1 Y 1 K GLU 15 ? CG ? B GLU 15 CG 70 1 Y 1 K GLU 15 ? CD ? B GLU 15 CD 71 1 Y 1 K GLU 15 ? OE1 ? B GLU 15 OE1 72 1 Y 1 K GLU 15 ? OE2 ? B GLU 15 OE2 73 1 Y 1 K GLU 19 ? CG ? B GLU 19 CG 74 1 Y 1 K GLU 19 ? CD ? B GLU 19 CD 75 1 Y 1 K GLU 19 ? OE1 ? B GLU 19 OE1 76 1 Y 1 K GLU 19 ? OE2 ? B GLU 19 OE2 77 1 Y 1 K LEU 24 ? CG ? B LEU 24 CG 78 1 Y 1 K LEU 24 ? CD1 ? B LEU 24 CD1 79 1 Y 1 K LEU 24 ? CD2 ? B LEU 24 CD2 80 1 Y 1 K THR 25 ? OG1 ? B THR 25 OG1 81 1 Y 1 K THR 25 ? CG2 ? B THR 25 CG2 82 1 Y 1 K GLU 27 ? CG ? B GLU 27 CG 83 1 Y 1 K GLU 27 ? CD ? B GLU 27 CD 84 1 Y 1 K GLU 27 ? OE1 ? B GLU 27 OE1 85 1 Y 1 K GLU 27 ? OE2 ? B GLU 27 OE2 86 1 Y 1 K MET 42 ? CG ? B MET 42 CG 87 1 Y 1 K MET 42 ? SD ? B MET 42 SD 88 1 Y 1 K MET 42 ? CE ? B MET 42 CE 89 1 Y 1 K GLU 45 ? CG ? B GLU 45 CG 90 1 Y 1 K GLU 45 ? CD ? B GLU 45 CD 91 1 Y 1 K GLU 45 ? OE1 ? B GLU 45 OE1 92 1 Y 1 K GLU 45 ? OE2 ? B GLU 45 OE2 93 1 Y 1 K LEU 46 ? CG ? B LEU 46 CG 94 1 Y 1 K LEU 46 ? CD1 ? B LEU 46 CD1 95 1 Y 1 K LEU 46 ? CD2 ? B LEU 46 CD2 96 1 Y 1 K ILE 47 ? CG1 ? B ILE 47 CG1 97 1 Y 1 K ILE 47 ? CG2 ? B ILE 47 CG2 98 1 Y 1 K ILE 47 ? CD1 ? B ILE 47 CD1 99 1 Y 1 K LYS 48 ? CG ? B LYS 48 CG 100 1 Y 1 K LYS 48 ? CD ? B LYS 48 CD 101 1 Y 1 K LYS 48 ? CE ? B LYS 48 CE 102 1 Y 1 K LYS 48 ? NZ ? B LYS 48 NZ 103 1 Y 1 K SER 49 ? OG ? B SER 49 OG 104 1 Y 1 K ASP 50 ? CG ? B ASP 50 CG 105 1 Y 1 K ASP 50 ? OD1 ? B ASP 50 OD1 106 1 Y 1 K ASP 50 ? OD2 ? B ASP 50 OD2 107 1 Y 1 K ASP 51 ? CG ? B ASP 51 CG 108 1 Y 1 K ASP 51 ? OD1 ? B ASP 51 OD1 109 1 Y 1 K ASP 51 ? OD2 ? B ASP 51 OD2 110 1 Y 1 K ARG 53 ? CG ? B ARG 53 CG 111 1 Y 1 K ARG 53 ? CD ? B ARG 53 CD 112 1 Y 1 K ARG 53 ? NE ? B ARG 53 NE 113 1 Y 1 K ARG 53 ? CZ ? B ARG 53 CZ 114 1 Y 1 K ARG 53 ? NH1 ? B ARG 53 NH1 115 1 Y 1 K ARG 53 ? NH2 ? B ARG 53 NH2 116 1 Y 1 K GLU 54 ? CG ? B GLU 54 CG 117 1 Y 1 K GLU 54 ? CD ? B GLU 54 CD 118 1 Y 1 K GLU 54 ? OE1 ? B GLU 54 OE1 119 1 Y 1 K GLU 54 ? OE2 ? B GLU 54 OE2 120 1 Y 1 K ILE 55 ? CG1 ? B ILE 55 CG1 121 1 Y 1 K ILE 55 ? CG2 ? B ILE 55 CG2 122 1 Y 1 K ILE 55 ? CD1 ? B ILE 55 CD1 123 1 Y 1 K ARG 56 ? CG ? B ARG 56 CG 124 1 Y 1 K ARG 56 ? CD ? B ARG 56 CD 125 1 Y 1 K ARG 56 ? NE ? B ARG 56 NE 126 1 Y 1 K ARG 56 ? CZ ? B ARG 56 CZ 127 1 Y 1 K ARG 56 ? NH1 ? B ARG 56 NH1 128 1 Y 1 K ARG 56 ? NH2 ? B ARG 56 NH2 129 1 Y 1 K GLU 57 ? CG ? B GLU 57 CG 130 1 Y 1 K GLU 57 ? CD ? B GLU 57 CD 131 1 Y 1 K GLU 57 ? OE1 ? B GLU 57 OE1 132 1 Y 1 K GLU 57 ? OE2 ? B GLU 57 OE2 133 1 Y 1 K GLU 60 ? CG ? B GLU 60 CG 134 1 Y 1 K GLU 60 ? CD ? B GLU 60 CD 135 1 Y 1 K GLU 60 ? OE1 ? B GLU 60 OE1 136 1 Y 1 K GLU 60 ? OE2 ? B GLU 60 OE2 137 1 Y 1 K ARG 64 ? CG ? B ARG 64 CG 138 1 Y 1 K ARG 64 ? CD ? B ARG 64 CD 139 1 Y 1 K ARG 64 ? NE ? B ARG 64 NE 140 1 Y 1 K ARG 64 ? CZ ? B ARG 64 CZ 141 1 Y 1 K ARG 64 ? NH1 ? B ARG 64 NH1 142 1 Y 1 K ARG 64 ? NH2 ? B ARG 64 NH2 143 1 Y 1 K GLU 67 ? CG ? B GLU 67 CG 144 1 Y 1 K GLU 67 ? CD ? B GLU 67 CD 145 1 Y 1 K GLU 67 ? OE1 ? B GLU 67 OE1 146 1 Y 1 K GLU 67 ? OE2 ? B GLU 67 OE2 147 1 Y 1 K GLU 70 ? CG ? B GLU 70 CG 148 1 Y 1 K GLU 70 ? CD ? B GLU 70 CD 149 1 Y 1 K GLU 70 ? OE1 ? B GLU 70 OE1 150 1 Y 1 K GLU 70 ? OE2 ? B GLU 70 OE2 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9CWP _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9CWP _struct.title 'Local refinement of the SARS-CoV-2 BA.2.86 RBD in complex with TRI2-2 minibinder' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9CWP _struct_keywords.text ;Sarbecoviruses, Spike glycoprotein, Structural Genomic, inhibitor, viral protein, minibinder, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID ; _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 9CWP 9CWP ? 1 ? 1 2 PDB 9CWP 9CWP ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9CWP C 1 ? 193 ? 9CWP 334 ? 527 ? 334 527 2 2 9CWP K 1 ? 148 ? 9CWP 1 ? 148 ? 1 148 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PHE A 5 ? ASN A 10 ? PHE C 338 ASN C 343 1 ? 6 HELX_P HELX_P2 AA2 SER A 16 ? TRP A 20 ? SER C 349 TRP C 353 5 ? 5 HELX_P HELX_P3 AA3 TYR A 32 ? TYR A 36 ? TYR C 365 TYR C 369 5 ? 5 HELX_P HELX_P4 AA4 LYS A 53 ? ASP A 56 ? LYS C 386 ASP C 389 5 ? 4 HELX_P HELX_P5 AA5 ASN A 72 ? ILE A 77 ? ASN C 405 ILE C 410 5 ? 6 HELX_P HELX_P6 AA6 GLY A 83 ? ASN A 89 ? GLY C 416 ASN C 422 1 ? 7 HELX_P HELX_P7 AA7 SER A 105 ? SER A 110 ? SER C 438 SER C 443 1 ? 6 HELX_P HELX_P8 AA8 GLY A 168 ? HIS A 171 ? GLY C 502 HIS C 505 5 ? 4 HELX_P HELX_P9 AA9 LEU B 2 ? LEU B 20 ? LEU K 2 LEU K 20 1 ? 19 HELX_P HELX_P10 AB1 LEU B 21 ? LYS B 23 ? LEU K 21 LYS K 23 5 ? 3 HELX_P HELX_P11 AB2 THR B 25 ? SER B 49 ? THR K 25 SER K 49 1 ? 25 HELX_P HELX_P12 AB3 ASP B 51 ? GLU B 70 ? ASP K 51 GLU K 70 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 28 SG ? ? C CYS 336 C CYS 361 1_555 ? ? ? ? ? ? ? 2.022 ? ? disulf2 disulf ? ? A CYS 46 SG ? ? ? 1_555 A CYS 99 SG ? ? C CYS 379 C CYS 432 1_555 ? ? ? ? ? ? ? 2.103 ? ? disulf3 disulf ? ? A CYS 58 SG ? ? ? 1_555 A CYS 191 SG ? ? C CYS 391 C CYS 525 1_555 ? ? ? ? ? ? ? 2.050 ? ? disulf4 disulf ? ? A CYS 147 SG ? ? ? 1_555 A CYS 154 SG ? ? C CYS 480 C CYS 488 1_555 ? ? ? ? ? ? ? 2.026 ? ? covale1 covale one ? A ASN 10 ND2 ? ? ? 1_555 C NAG . C1 ? ? C ASN 343 C NAG 601 1_555 ? ? ? ? ? ? ? 1.493 ? N-Glycosylation covale2 covale one ? A ASN 21 ND2 ? ? ? 1_555 D NAG . C1 ? ? C ASN 354 C NAG 602 1_555 ? ? ? ? ? ? ? 1.493 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG C . ? ASN A 10 ? NAG C 601 ? 1_555 ASN C 343 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 NAG D . ? ASN A 21 ? NAG C 602 ? 1_555 ASN C 354 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 3 CYS A 3 ? CYS A 28 ? CYS C 336 ? 1_555 CYS C 361 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 46 ? CYS A 99 ? CYS C 379 ? 1_555 CYS C 432 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS A 58 ? CYS A 191 ? CYS C 391 ? 1_555 CYS C 525 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS A 147 ? CYS A 154 ? CYS C 480 ? 1_555 CYS C 488 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 2 ? AA3 ? 2 ? AA4 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASN A 21 ? ILE A 25 ? ASN C 354 ILE C 358 AA1 2 ASN A 61 ? LYS A 70 ? ASN C 394 LYS C 403 AA1 3 PRO A 173 ? GLU A 182 ? PRO C 507 GLU C 516 AA1 4 GLY A 98 ? ASN A 104 ? GLY C 431 ASN C 437 AA1 5 ALA A 43 ? TYR A 47 ? ALA C 376 TYR C 380 AA2 1 CYS A 58 ? PHE A 59 ? CYS C 391 PHE C 392 AA2 2 VAL A 190 ? CYS A 191 ? VAL C 524 CYS C 525 AA3 1 TRP A 119 ? ARG A 121 ? TRP C 452 ARG C 454 AA3 2 LEU A 158 ? SER A 160 ? LEU C 492 SER C 494 AA4 1 TYR A 140 ? GLN A 141 ? TYR C 473 GLN C 474 AA4 2 CYS A 154 ? TYR A 155 ? CYS C 488 TYR C 489 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 23 ? N THR C 356 O ALA A 64 ? O ALA C 397 AA1 2 3 N ILE A 69 ? N ILE C 402 O TYR A 174 ? O TYR C 508 AA1 3 4 O VAL A 177 ? O VAL C 511 N ILE A 101 ? N ILE C 434 AA1 4 5 O GLY A 98 ? O GLY C 431 N TYR A 47 ? N TYR C 380 AA2 1 2 N PHE A 59 ? N PHE C 392 O VAL A 190 ? O VAL C 524 AA3 1 2 N TYR A 120 ? N TYR C 453 O GLN A 159 ? O GLN C 493 AA4 1 2 N TYR A 140 ? N TYR C 473 O TYR A 155 ? O TYR C 489 # _pdbx_entry_details.entry_id 9CWP _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE C 377 ? ? -155.07 71.68 2 1 SER C 446 ? ? 75.93 -3.50 3 1 LEU K 2 ? ? -102.74 -65.33 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NIAID, National Institute of Allergy and Infectious Diseases' _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.initial_of_center SSGCID # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9CWP _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9CWP _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.2 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 299537 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'SARS-CoV-2 BA.2.86 RBD in complex with TRI2-2 minibinder' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2' # _em_imaging.entry_id 9CWP _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 1800 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 9CWP _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9CWP _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 K GLU 71 ? B GLU 71 2 1 Y 1 K LEU 72 ? B LEU 72 3 1 Y 1 K ALA 73 ? B ALA 73 4 1 Y 1 K ARG 74 ? B ARG 74 5 1 Y 1 K LYS 75 ? B LYS 75 6 1 Y 1 K GLY 76 ? B GLY 76 7 1 Y 1 K GLY 77 ? B GLY 77 8 1 Y 1 K SER 78 ? B SER 78 9 1 Y 1 K GLU 79 ? B GLU 79 10 1 Y 1 K ALA 80 ? B ALA 80 11 1 Y 1 K LEU 81 ? B LEU 81 12 1 Y 1 K GLU 82 ? B GLU 82 13 1 Y 1 K GLU 83 ? B GLU 83 14 1 Y 1 K LEU 84 ? B LEU 84 15 1 Y 1 K GLU 85 ? B GLU 85 16 1 Y 1 K LYS 86 ? B LYS 86 17 1 Y 1 K ALA 87 ? B ALA 87 18 1 Y 1 K LEU 88 ? B LEU 88 19 1 Y 1 K ARG 89 ? B ARG 89 20 1 Y 1 K GLU 90 ? B GLU 90 21 1 Y 1 K LEU 91 ? B LEU 91 22 1 Y 1 K LYS 92 ? B LYS 92 23 1 Y 1 K LYS 93 ? B LYS 93 24 1 Y 1 K SER 94 ? B SER 94 25 1 Y 1 K THR 95 ? B THR 95 26 1 Y 1 K ASP 96 ? B ASP 96 27 1 Y 1 K GLU 97 ? B GLU 97 28 1 Y 1 K LEU 98 ? B LEU 98 29 1 Y 1 K GLU 99 ? B GLU 99 30 1 Y 1 K ARG 100 ? B ARG 100 31 1 Y 1 K SER 101 ? B SER 101 32 1 Y 1 K THR 102 ? B THR 102 33 1 Y 1 K GLU 103 ? B GLU 103 34 1 Y 1 K GLU 104 ? B GLU 104 35 1 Y 1 K LEU 105 ? B LEU 105 36 1 Y 1 K GLU 106 ? B GLU 106 37 1 Y 1 K LYS 107 ? B LYS 107 38 1 Y 1 K ASN 108 ? B ASN 108 39 1 Y 1 K PRO 109 ? B PRO 109 40 1 Y 1 K SER 110 ? B SER 110 41 1 Y 1 K GLU 111 ? B GLU 111 42 1 Y 1 K ASP 112 ? B ASP 112 43 1 Y 1 K ALA 113 ? B ALA 113 44 1 Y 1 K LEU 114 ? B LEU 114 45 1 Y 1 K VAL 115 ? B VAL 115 46 1 Y 1 K GLU 116 ? B GLU 116 47 1 Y 1 K ASN 117 ? B ASN 117 48 1 Y 1 K ASN 118 ? B ASN 118 49 1 Y 1 K ARG 119 ? B ARG 119 50 1 Y 1 K LEU 120 ? B LEU 120 51 1 Y 1 K ILE 121 ? B ILE 121 52 1 Y 1 K VAL 122 ? B VAL 122 53 1 Y 1 K GLU 123 ? B GLU 123 54 1 Y 1 K ASN 124 ? B ASN 124 55 1 Y 1 K ASN 125 ? B ASN 125 56 1 Y 1 K LYS 126 ? B LYS 126 57 1 Y 1 K ILE 127 ? B ILE 127 58 1 Y 1 K ILE 128 ? B ILE 128 59 1 Y 1 K VAL 129 ? B VAL 129 60 1 Y 1 K GLU 130 ? B GLU 130 61 1 Y 1 K VAL 131 ? B VAL 131 62 1 Y 1 K LEU 132 ? B LEU 132 63 1 Y 1 K ARG 133 ? B ARG 133 64 1 Y 1 K ILE 134 ? B ILE 134 65 1 Y 1 K ILE 135 ? B ILE 135 66 1 Y 1 K ALA 136 ? B ALA 136 67 1 Y 1 K LYS 137 ? B LYS 137 68 1 Y 1 K VAL 138 ? B VAL 138 69 1 Y 1 K LEU 139 ? B LEU 139 70 1 Y 1 K LYS 140 ? B LYS 140 71 1 Y 1 K LEU 141 ? B LEU 141 72 1 Y 1 K GLU 142 ? B GLU 142 73 1 Y 1 K HIS 143 ? B HIS 143 74 1 Y 1 K HIS 144 ? B HIS 144 75 1 Y 1 K HIS 145 ? B HIS 145 76 1 Y 1 K HIS 146 ? B HIS 146 77 1 Y 1 K HIS 147 ? B HIS 147 78 1 Y 1 K HIS 148 ? B HIS 148 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 NAG C1 C N R 247 NAG C2 C N R 248 NAG C3 C N R 249 NAG C4 C N S 250 NAG C5 C N R 251 NAG C6 C N N 252 NAG C7 C N N 253 NAG C8 C N N 254 NAG N2 N N N 255 NAG O1 O N N 256 NAG O3 O N N 257 NAG O4 O N N 258 NAG O5 O N N 259 NAG O6 O N N 260 NAG O7 O N N 261 NAG H1 H N N 262 NAG H2 H N N 263 NAG H3 H N N 264 NAG H4 H N N 265 NAG H5 H N N 266 NAG H61 H N N 267 NAG H62 H N N 268 NAG H81 H N N 269 NAG H82 H N N 270 NAG H83 H N N 271 NAG HN2 H N N 272 NAG HO1 H N N 273 NAG HO3 H N N 274 NAG HO4 H N N 275 NAG HO6 H N N 276 PHE N N N N 277 PHE CA C N S 278 PHE C C N N 279 PHE O O N N 280 PHE CB C N N 281 PHE CG C Y N 282 PHE CD1 C Y N 283 PHE CD2 C Y N 284 PHE CE1 C Y N 285 PHE CE2 C Y N 286 PHE CZ C Y N 287 PHE OXT O N N 288 PHE H H N N 289 PHE H2 H N N 290 PHE HA H N N 291 PHE HB2 H N N 292 PHE HB3 H N N 293 PHE HD1 H N N 294 PHE HD2 H N N 295 PHE HE1 H N N 296 PHE HE2 H N N 297 PHE HZ H N N 298 PHE HXT H N N 299 PRO N N N N 300 PRO CA C N S 301 PRO C C N N 302 PRO O O N N 303 PRO CB C N N 304 PRO CG C N N 305 PRO CD C N N 306 PRO OXT O N N 307 PRO H H N N 308 PRO HA H N N 309 PRO HB2 H N N 310 PRO HB3 H N N 311 PRO HG2 H N N 312 PRO HG3 H N N 313 PRO HD2 H N N 314 PRO HD3 H N N 315 PRO HXT H N N 316 SER N N N N 317 SER CA C N S 318 SER C C N N 319 SER O O N N 320 SER CB C N N 321 SER OG O N N 322 SER OXT O N N 323 SER H H N N 324 SER H2 H N N 325 SER HA H N N 326 SER HB2 H N N 327 SER HB3 H N N 328 SER HG H N N 329 SER HXT H N N 330 THR N N N N 331 THR CA C N S 332 THR C C N N 333 THR O O N N 334 THR CB C N R 335 THR OG1 O N N 336 THR CG2 C N N 337 THR OXT O N N 338 THR H H N N 339 THR H2 H N N 340 THR HA H N N 341 THR HB H N N 342 THR HG1 H N N 343 THR HG21 H N N 344 THR HG22 H N N 345 THR HG23 H N N 346 THR HXT H N N 347 TRP N N N N 348 TRP CA C N S 349 TRP C C N N 350 TRP O O N N 351 TRP CB C N N 352 TRP CG C Y N 353 TRP CD1 C Y N 354 TRP CD2 C Y N 355 TRP NE1 N Y N 356 TRP CE2 C Y N 357 TRP CE3 C Y N 358 TRP CZ2 C Y N 359 TRP CZ3 C Y N 360 TRP CH2 C Y N 361 TRP OXT O N N 362 TRP H H N N 363 TRP H2 H N N 364 TRP HA H N N 365 TRP HB2 H N N 366 TRP HB3 H N N 367 TRP HD1 H N N 368 TRP HE1 H N N 369 TRP HE3 H N N 370 TRP HZ2 H N N 371 TRP HZ3 H N N 372 TRP HH2 H N N 373 TRP HXT H N N 374 TYR N N N N 375 TYR CA C N S 376 TYR C C N N 377 TYR O O N N 378 TYR CB C N N 379 TYR CG C Y N 380 TYR CD1 C Y N 381 TYR CD2 C Y N 382 TYR CE1 C Y N 383 TYR CE2 C Y N 384 TYR CZ C Y N 385 TYR OH O N N 386 TYR OXT O N N 387 TYR H H N N 388 TYR H2 H N N 389 TYR HA H N N 390 TYR HB2 H N N 391 TYR HB3 H N N 392 TYR HD1 H N N 393 TYR HD2 H N N 394 TYR HE1 H N N 395 TYR HE2 H N N 396 TYR HH H N N 397 TYR HXT H N N 398 VAL N N N N 399 VAL CA C N S 400 VAL C C N N 401 VAL O O N N 402 VAL CB C N N 403 VAL CG1 C N N 404 VAL CG2 C N N 405 VAL OXT O N N 406 VAL H H N N 407 VAL H2 H N N 408 VAL HA H N N 409 VAL HB H N N 410 VAL HG11 H N N 411 VAL HG12 H N N 412 VAL HG13 H N N 413 VAL HG21 H N N 414 VAL HG22 H N N 415 VAL HG23 H N N 416 VAL HXT H N N 417 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 NAG C1 C2 sing N N 235 NAG C1 O1 sing N N 236 NAG C1 O5 sing N N 237 NAG C1 H1 sing N N 238 NAG C2 C3 sing N N 239 NAG C2 N2 sing N N 240 NAG C2 H2 sing N N 241 NAG C3 C4 sing N N 242 NAG C3 O3 sing N N 243 NAG C3 H3 sing N N 244 NAG C4 C5 sing N N 245 NAG C4 O4 sing N N 246 NAG C4 H4 sing N N 247 NAG C5 C6 sing N N 248 NAG C5 O5 sing N N 249 NAG C5 H5 sing N N 250 NAG C6 O6 sing N N 251 NAG C6 H61 sing N N 252 NAG C6 H62 sing N N 253 NAG C7 C8 sing N N 254 NAG C7 N2 sing N N 255 NAG C7 O7 doub N N 256 NAG C8 H81 sing N N 257 NAG C8 H82 sing N N 258 NAG C8 H83 sing N N 259 NAG N2 HN2 sing N N 260 NAG O1 HO1 sing N N 261 NAG O3 HO3 sing N N 262 NAG O4 HO4 sing N N 263 NAG O6 HO6 sing N N 264 PHE N CA sing N N 265 PHE N H sing N N 266 PHE N H2 sing N N 267 PHE CA C sing N N 268 PHE CA CB sing N N 269 PHE CA HA sing N N 270 PHE C O doub N N 271 PHE C OXT sing N N 272 PHE CB CG sing N N 273 PHE CB HB2 sing N N 274 PHE CB HB3 sing N N 275 PHE CG CD1 doub Y N 276 PHE CG CD2 sing Y N 277 PHE CD1 CE1 sing Y N 278 PHE CD1 HD1 sing N N 279 PHE CD2 CE2 doub Y N 280 PHE CD2 HD2 sing N N 281 PHE CE1 CZ doub Y N 282 PHE CE1 HE1 sing N N 283 PHE CE2 CZ sing Y N 284 PHE CE2 HE2 sing N N 285 PHE CZ HZ sing N N 286 PHE OXT HXT sing N N 287 PRO N CA sing N N 288 PRO N CD sing N N 289 PRO N H sing N N 290 PRO CA C sing N N 291 PRO CA CB sing N N 292 PRO CA HA sing N N 293 PRO C O doub N N 294 PRO C OXT sing N N 295 PRO CB CG sing N N 296 PRO CB HB2 sing N N 297 PRO CB HB3 sing N N 298 PRO CG CD sing N N 299 PRO CG HG2 sing N N 300 PRO CG HG3 sing N N 301 PRO CD HD2 sing N N 302 PRO CD HD3 sing N N 303 PRO OXT HXT sing N N 304 SER N CA sing N N 305 SER N H sing N N 306 SER N H2 sing N N 307 SER CA C sing N N 308 SER CA CB sing N N 309 SER CA HA sing N N 310 SER C O doub N N 311 SER C OXT sing N N 312 SER CB OG sing N N 313 SER CB HB2 sing N N 314 SER CB HB3 sing N N 315 SER OG HG sing N N 316 SER OXT HXT sing N N 317 THR N CA sing N N 318 THR N H sing N N 319 THR N H2 sing N N 320 THR CA C sing N N 321 THR CA CB sing N N 322 THR CA HA sing N N 323 THR C O doub N N 324 THR C OXT sing N N 325 THR CB OG1 sing N N 326 THR CB CG2 sing N N 327 THR CB HB sing N N 328 THR OG1 HG1 sing N N 329 THR CG2 HG21 sing N N 330 THR CG2 HG22 sing N N 331 THR CG2 HG23 sing N N 332 THR OXT HXT sing N N 333 TRP N CA sing N N 334 TRP N H sing N N 335 TRP N H2 sing N N 336 TRP CA C sing N N 337 TRP CA CB sing N N 338 TRP CA HA sing N N 339 TRP C O doub N N 340 TRP C OXT sing N N 341 TRP CB CG sing N N 342 TRP CB HB2 sing N N 343 TRP CB HB3 sing N N 344 TRP CG CD1 doub Y N 345 TRP CG CD2 sing Y N 346 TRP CD1 NE1 sing Y N 347 TRP CD1 HD1 sing N N 348 TRP CD2 CE2 doub Y N 349 TRP CD2 CE3 sing Y N 350 TRP NE1 CE2 sing Y N 351 TRP NE1 HE1 sing N N 352 TRP CE2 CZ2 sing Y N 353 TRP CE3 CZ3 doub Y N 354 TRP CE3 HE3 sing N N 355 TRP CZ2 CH2 doub Y N 356 TRP CZ2 HZ2 sing N N 357 TRP CZ3 CH2 sing Y N 358 TRP CZ3 HZ3 sing N N 359 TRP CH2 HH2 sing N N 360 TRP OXT HXT sing N N 361 TYR N CA sing N N 362 TYR N H sing N N 363 TYR N H2 sing N N 364 TYR CA C sing N N 365 TYR CA CB sing N N 366 TYR CA HA sing N N 367 TYR C O doub N N 368 TYR C OXT sing N N 369 TYR CB CG sing N N 370 TYR CB HB2 sing N N 371 TYR CB HB3 sing N N 372 TYR CG CD1 doub Y N 373 TYR CG CD2 sing Y N 374 TYR CD1 CE1 sing Y N 375 TYR CD1 HD1 sing N N 376 TYR CD2 CE2 doub Y N 377 TYR CD2 HD2 sing N N 378 TYR CE1 CZ doub Y N 379 TYR CE1 HE1 sing N N 380 TYR CE2 CZ sing Y N 381 TYR CE2 HE2 sing N N 382 TYR CZ OH sing N N 383 TYR OH HH sing N N 384 TYR OXT HXT sing N N 385 VAL N CA sing N N 386 VAL N H sing N N 387 VAL N H2 sing N N 388 VAL CA C sing N N 389 VAL CA CB sing N N 390 VAL CA HA sing N N 391 VAL C O doub N N 392 VAL C OXT sing N N 393 VAL CB CG1 sing N N 394 VAL CB CG2 sing N N 395 VAL CB HB sing N N 396 VAL CG1 HG11 sing N N 397 VAL CG1 HG12 sing N N 398 VAL CG1 HG13 sing N N 399 VAL CG2 HG21 sing N N 400 VAL CG2 HG22 sing N N 401 VAL CG2 HG23 sing N N 402 VAL OXT HXT sing N N 403 # _em_admin.current_status REL _em_admin.deposition_date 2024-07-29 _em_admin.deposition_site RCSB _em_admin.entry_id 9CWP _em_admin.last_update 2026-01-21 _em_admin.map_release_date 2026-01-21 _em_admin.title 'Local refinement of the SARS-CoV-2 BA.2.86 RBD in complex with TRI2-2 minibinder' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.ncbi_tax_id 2833184 _em_entity_assembly_naturalsource.organism 'Sarbecovirus sp.' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 53.25 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number AI158186 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9CWP _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #