HEADER TRANSFERASE 30-JUL-24 9CWU TITLE CRYSTAL STRUCTURE OF HUMAN RIBOKINASE IN COMPLEX WITH K+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RK; COMPND 5 EC: 2.7.1.15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBKS, RBSK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS RIBOKINASE, TRANSFERASE, RIBOSE METABOLISM EXPDTA X-RAY DIFFRACTION AUTHOR J.PARK,N.N.AKANMORI REVDAT 1 06-AUG-25 9CWU 0 JRNL AUTH J.PARK,N.N.AKANMORI JRNL TITL TO BE PUBLISHED JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 102148 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.989 REMARK 3 FREE R VALUE TEST SET COUNT : 5096 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7134 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 394 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4607 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 635 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.36500 REMARK 3 B22 (A**2) : -1.82200 REMARK 3 B33 (A**2) : -0.62800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.83300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.018 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4826 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4652 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6578 ; 1.743 ; 1.802 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10734 ; 0.619 ; 1.727 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 653 ; 6.408 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 15 ;16.997 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 800 ;12.310 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 800 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5664 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1012 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 918 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 53 ; 0.225 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2388 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 417 ; 0.190 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.119 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 8 ; 0.107 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2570 ; 7.146 ; 2.431 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2570 ; 7.142 ; 2.431 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3237 ; 9.351 ; 4.373 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3238 ; 9.353 ; 4.373 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2256 ; 8.310 ; 2.790 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2257 ; 8.308 ; 2.790 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3341 ;11.499 ; 4.995 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3342 ;11.498 ; 4.995 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 9478 ; 5.379 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 15 A 321 NULL REMARK 3 1 A 15 A 321 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9CWU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-24. REMARK 100 THE DEPOSITION ID IS D_1000286439. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102166 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 55.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.65100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRISHCL (PH 8.5), 25% (W/V) PEG REMARK 280 2000 MME, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.43500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 GLU A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 465 ARG A 9 REMARK 465 GLN A 10 REMARK 465 TRP A 11 REMARK 465 GLN A 12 REMARK 465 GLU A 13 REMARK 465 GLU A 14 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 GLY B 5 REMARK 465 GLU B 6 REMARK 465 PRO B 7 REMARK 465 GLN B 8 REMARK 465 ARG B 9 REMARK 465 GLN B 10 REMARK 465 TRP B 11 REMARK 465 GLN B 12 REMARK 465 GLU B 13 REMARK 465 LEU B 323 REMARK 465 GLU B 324 REMARK 465 HIS B 325 REMARK 465 HIS B 326 REMARK 465 HIS B 327 REMARK 465 HIS B 328 REMARK 465 HIS B 329 REMARK 465 HIS B 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 137 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 260 CD CE NZ REMARK 470 GLU B 14 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 544 O HOH A 749 2.06 REMARK 500 O HOH B 666 O HOH B 797 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 96 CG - CD - OE1 ANGL. DEV. = 12.8 DEGREES REMARK 500 GLU A 96 CG - CD - OE2 ANGL. DEV. = -13.0 DEGREES REMARK 500 PHE B 322 CA - C - O ANGL. DEV. = -13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 152 -159.33 -131.36 REMARK 500 GLN A 152 -159.33 -131.89 REMARK 500 ASP A 184 72.13 -112.41 REMARK 500 ASP A 263 109.44 -160.04 REMARK 500 THR A 307 -87.78 -97.68 REMARK 500 ILE B 155 -167.28 -119.83 REMARK 500 ASP B 184 67.47 -117.30 REMARK 500 ASP B 263 111.26 -162.36 REMARK 500 THR B 307 -86.64 -97.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 293 0.08 SIDE CHAIN REMARK 500 ARG B 34 0.24 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 808 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 809 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 810 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A 811 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B 821 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B 822 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B 823 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B 824 DISTANCE = 6.13 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 403 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 263 O REMARK 620 2 THR A 265 O 88.4 REMARK 620 3 SER A 301 O 91.4 128.5 REMARK 620 4 ALA A 304 O 86.3 159.1 72.0 REMARK 620 5 GLY A 306 O 127.8 74.9 137.5 92.5 REMARK 620 6 SER A 310 OG 160.5 95.7 71.2 96.1 71.6 REMARK 620 7 HOH A 619 O 76.6 56.6 73.3 140.7 125.9 89.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 402 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 263 O REMARK 620 2 THR B 265 O 86.6 REMARK 620 3 SER B 301 O 92.5 130.0 REMARK 620 4 ALA B 304 O 85.4 155.5 73.5 REMARK 620 5 GLY B 306 O 127.5 75.5 136.4 91.2 REMARK 620 6 SER B 310 OG 161.6 96.6 71.5 98.2 70.7 REMARK 620 7 HOH B 610 O 77.8 56.0 74.9 143.4 124.7 89.0 REMARK 620 N 1 2 3 4 5 6 DBREF 9CWU A 1 322 UNP Q9H477 RBSK_HUMAN 1 322 DBREF 9CWU B 1 322 UNP Q9H477 RBSK_HUMAN 1 322 SEQADV 9CWU LEU A 323 UNP Q9H477 EXPRESSION TAG SEQADV 9CWU GLU A 324 UNP Q9H477 EXPRESSION TAG SEQADV 9CWU HIS A 325 UNP Q9H477 EXPRESSION TAG SEQADV 9CWU HIS A 326 UNP Q9H477 EXPRESSION TAG SEQADV 9CWU HIS A 327 UNP Q9H477 EXPRESSION TAG SEQADV 9CWU HIS A 328 UNP Q9H477 EXPRESSION TAG SEQADV 9CWU HIS A 329 UNP Q9H477 EXPRESSION TAG SEQADV 9CWU HIS A 330 UNP Q9H477 EXPRESSION TAG SEQADV 9CWU LEU B 323 UNP Q9H477 EXPRESSION TAG SEQADV 9CWU GLU B 324 UNP Q9H477 EXPRESSION TAG SEQADV 9CWU HIS B 325 UNP Q9H477 EXPRESSION TAG SEQADV 9CWU HIS B 326 UNP Q9H477 EXPRESSION TAG SEQADV 9CWU HIS B 327 UNP Q9H477 EXPRESSION TAG SEQADV 9CWU HIS B 328 UNP Q9H477 EXPRESSION TAG SEQADV 9CWU HIS B 329 UNP Q9H477 EXPRESSION TAG SEQADV 9CWU HIS B 330 UNP Q9H477 EXPRESSION TAG SEQRES 1 A 330 MET ALA ALA SER GLY GLU PRO GLN ARG GLN TRP GLN GLU SEQRES 2 A 330 GLU VAL ALA ALA VAL VAL VAL VAL GLY SER CYS MET THR SEQRES 3 A 330 ASP LEU VAL SER LEU THR SER ARG LEU PRO LYS THR GLY SEQRES 4 A 330 GLU THR ILE HIS GLY HIS LYS PHE PHE ILE GLY PHE GLY SEQRES 5 A 330 GLY LYS GLY ALA ASN GLN CYS VAL GLN ALA ALA ARG LEU SEQRES 6 A 330 GLY ALA MET THR SER MET VAL CYS LYS VAL GLY LYS ASP SEQRES 7 A 330 SER PHE GLY ASN ASP TYR ILE GLU ASN LEU LYS GLN ASN SEQRES 8 A 330 ASP ILE SER THR GLU PHE THR TYR GLN THR LYS ASP ALA SEQRES 9 A 330 ALA THR GLY THR ALA SER ILE ILE VAL ASN ASN GLU GLY SEQRES 10 A 330 GLN ASN ILE ILE VAL ILE VAL ALA GLY ALA ASN LEU LEU SEQRES 11 A 330 LEU ASN THR GLU ASP LEU ARG ALA ALA ALA ASN VAL ILE SEQRES 12 A 330 SER ARG ALA LYS VAL MET VAL CYS GLN LEU GLU ILE THR SEQRES 13 A 330 PRO ALA THR SER LEU GLU ALA LEU THR MET ALA ARG ARG SEQRES 14 A 330 SER GLY VAL LYS THR LEU PHE ASN PRO ALA PRO ALA ILE SEQRES 15 A 330 ALA ASP LEU ASP PRO GLN PHE TYR THR LEU SER ASP VAL SEQRES 16 A 330 PHE CYS CYS ASN GLU SER GLU ALA GLU ILE LEU THR GLY SEQRES 17 A 330 LEU THR VAL GLY SER ALA ALA ASP ALA GLY GLU ALA ALA SEQRES 18 A 330 LEU VAL LEU LEU LYS ARG GLY CYS GLN VAL VAL ILE ILE SEQRES 19 A 330 THR LEU GLY ALA GLU GLY CYS VAL VAL LEU SER GLN THR SEQRES 20 A 330 GLU PRO GLU PRO LYS HIS ILE PRO THR GLU LYS VAL LYS SEQRES 21 A 330 ALA VAL ASP THR THR GLY ALA GLY ASP SER PHE VAL GLY SEQRES 22 A 330 ALA LEU ALA PHE TYR LEU ALA TYR TYR PRO ASN LEU SER SEQRES 23 A 330 LEU GLU ASP MET LEU ASN ARG SER ASN PHE ILE ALA ALA SEQRES 24 A 330 VAL SER VAL GLN ALA ALA GLY THR GLN SER SER TYR PRO SEQRES 25 A 330 TYR LYS LYS ASP LEU PRO LEU THR LEU PHE LEU GLU HIS SEQRES 26 A 330 HIS HIS HIS HIS HIS SEQRES 1 B 330 MET ALA ALA SER GLY GLU PRO GLN ARG GLN TRP GLN GLU SEQRES 2 B 330 GLU VAL ALA ALA VAL VAL VAL VAL GLY SER CYS MET THR SEQRES 3 B 330 ASP LEU VAL SER LEU THR SER ARG LEU PRO LYS THR GLY SEQRES 4 B 330 GLU THR ILE HIS GLY HIS LYS PHE PHE ILE GLY PHE GLY SEQRES 5 B 330 GLY LYS GLY ALA ASN GLN CYS VAL GLN ALA ALA ARG LEU SEQRES 6 B 330 GLY ALA MET THR SER MET VAL CYS LYS VAL GLY LYS ASP SEQRES 7 B 330 SER PHE GLY ASN ASP TYR ILE GLU ASN LEU LYS GLN ASN SEQRES 8 B 330 ASP ILE SER THR GLU PHE THR TYR GLN THR LYS ASP ALA SEQRES 9 B 330 ALA THR GLY THR ALA SER ILE ILE VAL ASN ASN GLU GLY SEQRES 10 B 330 GLN ASN ILE ILE VAL ILE VAL ALA GLY ALA ASN LEU LEU SEQRES 11 B 330 LEU ASN THR GLU ASP LEU ARG ALA ALA ALA ASN VAL ILE SEQRES 12 B 330 SER ARG ALA LYS VAL MET VAL CYS GLN LEU GLU ILE THR SEQRES 13 B 330 PRO ALA THR SER LEU GLU ALA LEU THR MET ALA ARG ARG SEQRES 14 B 330 SER GLY VAL LYS THR LEU PHE ASN PRO ALA PRO ALA ILE SEQRES 15 B 330 ALA ASP LEU ASP PRO GLN PHE TYR THR LEU SER ASP VAL SEQRES 16 B 330 PHE CYS CYS ASN GLU SER GLU ALA GLU ILE LEU THR GLY SEQRES 17 B 330 LEU THR VAL GLY SER ALA ALA ASP ALA GLY GLU ALA ALA SEQRES 18 B 330 LEU VAL LEU LEU LYS ARG GLY CYS GLN VAL VAL ILE ILE SEQRES 19 B 330 THR LEU GLY ALA GLU GLY CYS VAL VAL LEU SER GLN THR SEQRES 20 B 330 GLU PRO GLU PRO LYS HIS ILE PRO THR GLU LYS VAL LYS SEQRES 21 B 330 ALA VAL ASP THR THR GLY ALA GLY ASP SER PHE VAL GLY SEQRES 22 B 330 ALA LEU ALA PHE TYR LEU ALA TYR TYR PRO ASN LEU SER SEQRES 23 B 330 LEU GLU ASP MET LEU ASN ARG SER ASN PHE ILE ALA ALA SEQRES 24 B 330 VAL SER VAL GLN ALA ALA GLY THR GLN SER SER TYR PRO SEQRES 25 B 330 TYR LYS LYS ASP LEU PRO LEU THR LEU PHE LEU GLU HIS SEQRES 26 B 330 HIS HIS HIS HIS HIS HET GOL A 401 6 HET GOL A 402 6 HET K A 403 1 HET GOL B 401 6 HET K B 402 1 HETNAM GOL GLYCEROL HETNAM K POTASSIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 5 K 2(K 1+) FORMUL 8 HOH *635(H2 O) HELIX 1 AA1 GLY A 53 LEU A 65 1 13 HELIX 2 AA2 ASP A 78 ASN A 91 1 14 HELIX 3 AA3 GLY A 126 LEU A 131 5 6 HELIX 4 AA4 ASN A 132 ALA A 139 1 8 HELIX 5 AA5 ALA A 139 ARG A 145 1 7 HELIX 6 AA6 THR A 156 SER A 170 1 15 HELIX 7 AA7 ASP A 186 LEU A 192 1 7 HELIX 8 AA8 ASN A 199 GLY A 208 1 10 HELIX 9 AA9 SER A 213 ARG A 227 1 15 HELIX 10 AB1 GLY A 237 GLU A 239 5 3 HELIX 11 AB2 GLY A 266 TYR A 282 1 17 HELIX 12 AB3 SER A 286 VAL A 302 1 17 HELIX 13 AB4 THR A 307 TYR A 311 5 5 HELIX 14 AB5 TYR A 313 LEU A 317 5 5 HELIX 15 AB6 PRO A 318 LEU A 323 5 6 HELIX 16 AB7 GLY B 53 LEU B 65 1 13 HELIX 17 AB8 ASP B 78 ASN B 91 1 14 HELIX 18 AB9 ALA B 125 LEU B 131 5 7 HELIX 19 AC1 ASN B 132 ALA B 139 1 8 HELIX 20 AC2 ALA B 139 ARG B 145 1 7 HELIX 21 AC3 THR B 156 SER B 170 1 15 HELIX 22 AC4 PRO B 187 LEU B 192 1 6 HELIX 23 AC5 GLU B 200 GLY B 208 1 9 HELIX 24 AC6 SER B 213 ARG B 227 1 15 HELIX 25 AC7 GLY B 237 GLU B 239 5 3 HELIX 26 AC8 GLY B 266 TYR B 282 1 17 HELIX 27 AC9 SER B 286 VAL B 302 1 17 HELIX 28 AD1 THR B 307 TYR B 311 5 5 HELIX 29 AD2 TYR B 313 LEU B 317 5 5 HELIX 30 AD3 PRO B 318 PHE B 322 5 5 SHEET 1 AA1 9 THR A 98 THR A 101 0 SHEET 2 AA1 9 THR A 69 GLY A 76 1 N CYS A 73 O TYR A 99 SHEET 3 AA1 9 VAL A 18 VAL A 21 1 N VAL A 20 O VAL A 72 SHEET 4 AA1 9 VAL A 148 CYS A 151 1 O VAL A 148 N VAL A 19 SHEET 5 AA1 9 LYS A 173 PHE A 176 1 O LEU A 175 N MET A 149 SHEET 6 AA1 9 VAL A 195 CYS A 198 1 O VAL A 195 N PHE A 176 SHEET 7 AA1 9 VAL A 231 THR A 235 1 O ILE A 233 N PHE A 196 SHEET 8 AA1 9 CYS A 241 SER A 245 -1 O VAL A 242 N ILE A 234 SHEET 9 AA1 9 LYS A 252 ILE A 254 -1 O ILE A 254 N CYS A 241 SHEET 1 AA2 5 LYS A 46 GLY A 52 0 SHEET 2 AA2 5 MET A 25 LEU A 31 -1 N MET A 25 O GLY A 52 SHEET 3 AA2 5 THR A 108 VAL A 113 1 O ALA A 109 N LEU A 28 SHEET 4 AA2 5 ASN A 119 VAL A 124 -1 O VAL A 122 N SER A 110 SHEET 5 AA2 5 THR B 41 GLY B 44 1 O ILE B 42 N ILE A 123 SHEET 1 AA3 5 THR A 41 HIS A 43 0 SHEET 2 AA3 5 ASN B 119 VAL B 124 1 O ILE B 123 N ILE A 42 SHEET 3 AA3 5 GLY B 107 VAL B 113 -1 N SER B 110 O VAL B 122 SHEET 4 AA3 5 MET B 25 LEU B 31 1 N LEU B 28 O ALA B 109 SHEET 5 AA3 5 LYS B 46 GLY B 52 -1 O GLY B 50 N ASP B 27 SHEET 1 AA4 9 THR B 98 THR B 101 0 SHEET 2 AA4 9 THR B 69 GLY B 76 1 N CYS B 73 O TYR B 99 SHEET 3 AA4 9 VAL B 18 VAL B 21 1 N VAL B 20 O VAL B 72 SHEET 4 AA4 9 VAL B 148 CYS B 151 1 O VAL B 148 N VAL B 19 SHEET 5 AA4 9 LYS B 173 PHE B 176 1 O LEU B 175 N MET B 149 SHEET 6 AA4 9 VAL B 195 ASN B 199 1 O VAL B 195 N PHE B 176 SHEET 7 AA4 9 VAL B 231 THR B 235 1 O ILE B 233 N PHE B 196 SHEET 8 AA4 9 CYS B 241 SER B 245 -1 O LEU B 244 N VAL B 232 SHEET 9 AA4 9 LYS B 252 ILE B 254 -1 O ILE B 254 N CYS B 241 LINK O ASP A 263 K K A 403 1555 1555 2.67 LINK O THR A 265 K K A 403 1555 1555 3.18 LINK O SER A 301 K K A 403 1555 1555 2.81 LINK O ALA A 304 K K A 403 1555 1555 2.74 LINK O GLY A 306 K K A 403 1555 1555 2.61 LINK OG SER A 310 K K A 403 1555 1555 2.95 LINK K K A 403 O HOH A 619 1555 1555 2.80 LINK O ASP B 263 K K B 402 1555 1555 2.70 LINK O THR B 265 K K B 402 1555 1555 3.18 LINK O SER B 301 K K B 402 1555 1555 2.76 LINK O ALA B 304 K K B 402 1555 1555 2.70 LINK O GLY B 306 K K B 402 1555 1555 2.65 LINK OG SER B 310 K K B 402 1555 1555 2.93 LINK K K B 402 O HOH B 610 1555 1555 2.72 CISPEP 1 ALA A 179 PRO A 180 0 -11.81 CISPEP 2 ALA B 179 PRO B 180 0 -10.58 CRYST1 45.560 70.870 91.120 90.00 93.06 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021949 0.000000 0.001173 0.00000 SCALE2 0.000000 0.014110 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010990 0.00000 CONECT 1895 4740 CONECT 1910 4740 CONECT 2183 4740 CONECT 2205 4740 CONECT 2215 4740 CONECT 2243 4740 CONECT 4272 4747 CONECT 4287 4747 CONECT 4560 4747 CONECT 4582 4747 CONECT 4592 4747 CONECT 4620 4747 CONECT 4728 4729 4730 CONECT 4729 4728 CONECT 4730 4728 4731 4732 CONECT 4731 4730 CONECT 4732 4730 4733 CONECT 4733 4732 CONECT 4734 4735 4736 CONECT 4735 4734 CONECT 4736 4734 4737 4738 CONECT 4737 4736 CONECT 4738 4736 4739 CONECT 4739 4738 CONECT 4740 1895 1910 2183 2205 CONECT 4740 2215 2243 4868 CONECT 4741 4742 4743 CONECT 4742 4741 CONECT 4743 4741 4744 4745 CONECT 4744 4743 CONECT 4745 4743 4746 CONECT 4746 4745 CONECT 4747 4272 4287 4560 4582 CONECT 4747 4592 4620 5170 CONECT 4868 4740 CONECT 5170 4747 MASTER 415 0 5 30 28 0 0 6 5262 2 36 52 END