HEADER LYASE 01-AUG-24 9CYA TITLE C387S VARIANT OF D-ORNITHINE/D-LYSINE DECARBOXYLASE COMPLEXED WITH TITLE 2 HEPES AND PUTRESCINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ORNITHINE/D-LYSINE DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: D-ORN/D-LYS DECARBOXYLASE,DOKDC; COMPND 5 EC: 4.1.1.116; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 90371; SOURCE 5 GENE: DOKD, STM2360; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PYRIDOXAL-5'-PHOSPHATE, FOLD III, DECARBOXYLASE, D-AMINO ACID, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR R.S.PHILLIPS,S.BLANKENSHIP REVDAT 1 06-AUG-25 9CYA 0 JRNL AUTH R.S.PHILLIPS,S.BLANKENSHIP JRNL TITL STRUCTURE OF C387S VARIANT OF D-ORNITHINE/D-LYSINE JRNL TITL 2 DECARBOXYLASE COMPLEXED WITH HEPES AND PUTRESCINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX REMARK 1 REF ACTA CRYSTALLOGR., SECT. D: V. 75 861 2019 REMARK 1 REF 2 BIOL. CRYSTALLOGR. REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.1_5286 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 83915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 4232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.8200 - 4.3600 0.99 2810 141 0.1576 0.1840 REMARK 3 2 4.3600 - 3.4600 0.99 2753 150 0.1279 0.1426 REMARK 3 3 3.4600 - 3.0200 0.99 2723 150 0.1329 0.1695 REMARK 3 4 3.0200 - 2.7500 0.99 2721 163 0.1362 0.1554 REMARK 3 5 2.7500 - 2.5500 1.00 2705 141 0.1339 0.1572 REMARK 3 6 2.5500 - 2.4000 1.00 2687 169 0.1277 0.1720 REMARK 3 7 2.4000 - 2.2800 1.00 2746 139 0.1280 0.1644 REMARK 3 8 2.2800 - 2.1800 1.00 2735 131 0.1311 0.1647 REMARK 3 9 2.1800 - 2.1000 1.00 2705 160 0.1340 0.1573 REMARK 3 10 2.1000 - 2.0200 1.00 2714 136 0.1342 0.1647 REMARK 3 11 2.0200 - 1.9600 1.00 2744 123 0.1408 0.1701 REMARK 3 12 1.9600 - 1.9000 1.00 2707 154 0.1511 0.1717 REMARK 3 13 1.9000 - 1.8500 1.00 2685 145 0.1625 0.2092 REMARK 3 14 1.8500 - 1.8100 0.99 2690 134 0.1597 0.1953 REMARK 3 15 1.8100 - 1.7700 1.00 2733 148 0.1595 0.1842 REMARK 3 16 1.7700 - 1.7300 1.00 2676 171 0.1606 0.2021 REMARK 3 17 1.7300 - 1.6900 0.99 2689 147 0.1592 0.1977 REMARK 3 18 1.6900 - 1.6600 0.99 2679 146 0.1711 0.2198 REMARK 3 19 1.6600 - 1.6300 0.99 2712 117 0.1784 0.2533 REMARK 3 20 1.6300 - 1.6100 0.99 2683 171 0.1973 0.2299 REMARK 3 21 1.6100 - 1.5800 1.00 2692 136 0.2041 0.2855 REMARK 3 22 1.5800 - 1.5600 0.99 2734 128 0.2145 0.2153 REMARK 3 23 1.5600 - 1.5300 0.99 2654 126 0.2284 0.2537 REMARK 3 24 1.5300 - 1.5100 0.99 2713 123 0.2372 0.2514 REMARK 3 25 1.5100 - 1.4900 0.98 2661 139 0.2484 0.2769 REMARK 3 26 1.4900 - 1.4700 0.95 2571 145 0.2610 0.2581 REMARK 3 27 1.4700 - 1.4500 0.93 2497 129 0.2686 0.3481 REMARK 3 28 1.4500 - 1.4400 0.91 2475 138 0.2879 0.3309 REMARK 3 29 1.4400 - 1.4200 0.85 2293 118 0.3036 0.3356 REMARK 3 30 1.4200 - 1.4000 0.78 2096 114 0.3063 0.2945 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.371 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4123 REMARK 3 ANGLE : 1.003 5612 REMARK 3 CHIRALITY : 0.081 601 REMARK 3 PLANARITY : 0.010 739 REMARK 3 DIHEDRAL : 13.108 1571 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4723 -5.3589 22.0988 REMARK 3 T TENSOR REMARK 3 T11: 0.1923 T22: 0.6004 REMARK 3 T33: 0.1718 T12: -0.0372 REMARK 3 T13: 0.0402 T23: 0.0626 REMARK 3 L TENSOR REMARK 3 L11: 0.3997 L22: 0.1881 REMARK 3 L33: 0.8404 L12: 0.0670 REMARK 3 L13: 0.1546 L23: -0.0401 REMARK 3 S TENSOR REMARK 3 S11: 0.0776 S12: -0.6479 S13: -0.1594 REMARK 3 S21: 0.0667 S22: -0.0497 S23: 0.1513 REMARK 3 S31: 0.0879 S32: -0.4814 S33: -0.1334 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1692 3.2046 15.9145 REMARK 3 T TENSOR REMARK 3 T11: 0.1841 T22: 0.0951 REMARK 3 T33: 0.1229 T12: -0.0228 REMARK 3 T13: 0.0081 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 2.2775 L22: 0.1998 REMARK 3 L33: 1.3703 L12: -0.0047 REMARK 3 L13: 0.6159 L23: -0.0926 REMARK 3 S TENSOR REMARK 3 S11: -0.0725 S12: -0.1856 S13: 0.1097 REMARK 3 S21: 0.0333 S22: -0.0109 S23: -0.0458 REMARK 3 S31: -0.1493 S32: 0.0298 S33: 0.0477 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5230 -10.6765 8.6410 REMARK 3 T TENSOR REMARK 3 T11: 0.2119 T22: 0.2155 REMARK 3 T33: 0.1743 T12: 0.0721 REMARK 3 T13: 0.0341 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 3.6608 L22: 2.1178 REMARK 3 L33: 4.9058 L12: -1.4443 REMARK 3 L13: 0.2735 L23: -0.1457 REMARK 3 S TENSOR REMARK 3 S11: 0.1421 S12: 0.4755 S13: -0.4874 REMARK 3 S21: -0.1151 S22: -0.0524 S23: -0.2239 REMARK 3 S31: 0.3705 S32: 0.6335 S33: -0.1126 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1845 -11.5590 21.4169 REMARK 3 T TENSOR REMARK 3 T11: 0.1918 T22: 0.1376 REMARK 3 T33: 0.1961 T12: -0.0323 REMARK 3 T13: -0.0165 T23: 0.0697 REMARK 3 L TENSOR REMARK 3 L11: 2.5051 L22: 0.4527 REMARK 3 L33: 1.0384 L12: 0.1845 REMARK 3 L13: 0.5291 L23: -0.2679 REMARK 3 S TENSOR REMARK 3 S11: 0.1832 S12: -0.2911 S13: -0.4229 REMARK 3 S21: 0.0754 S22: -0.0052 S23: 0.0155 REMARK 3 S31: 0.1569 S32: -0.0375 S33: -0.0144 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 310 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3317 -9.9336 4.8964 REMARK 3 T TENSOR REMARK 3 T11: 0.1823 T22: 0.2414 REMARK 3 T33: 0.1834 T12: -0.0432 REMARK 3 T13: 0.0119 T23: 0.0616 REMARK 3 L TENSOR REMARK 3 L11: 2.7291 L22: 0.4268 REMARK 3 L33: 0.8151 L12: 0.3235 REMARK 3 L13: 0.4648 L23: -0.0872 REMARK 3 S TENSOR REMARK 3 S11: 0.0684 S12: -0.1711 S13: -0.3868 REMARK 3 S21: -0.0775 S22: 0.0678 S23: 0.0195 REMARK 3 S31: 0.1323 S32: -0.4171 S33: -0.1123 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 355 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1641 -5.7618 9.9669 REMARK 3 T TENSOR REMARK 3 T11: 0.1585 T22: 0.2298 REMARK 3 T33: 0.1424 T12: -0.0138 REMARK 3 T13: 0.0217 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 1.1143 L22: 0.4588 REMARK 3 L33: 1.0779 L12: 0.0591 REMARK 3 L13: 0.1113 L23: -0.0592 REMARK 3 S TENSOR REMARK 3 S11: 0.0288 S12: -0.3781 S13: -0.1318 REMARK 3 S21: 0.0023 S22: 0.0249 S23: 0.0206 REMARK 3 S31: 0.0137 S32: -0.3505 S33: -0.0148 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 447 THROUGH 469 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8780 14.2755 -1.7194 REMARK 3 T TENSOR REMARK 3 T11: 0.2322 T22: 0.0577 REMARK 3 T33: 0.2303 T12: 0.0134 REMARK 3 T13: -0.0528 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 3.3124 L22: 1.7010 REMARK 3 L33: 1.5558 L12: -0.1998 REMARK 3 L13: -1.1423 L23: 1.4705 REMARK 3 S TENSOR REMARK 3 S11: -0.0742 S12: 0.1656 S13: 0.4176 REMARK 3 S21: -0.1975 S22: 0.0748 S23: 0.1137 REMARK 3 S31: -0.2212 S32: -0.1487 S33: 0.0283 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9CYA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1000286518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979493 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84295 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 59.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES-K, PH 7.5, 0.2-0.4 M REMARK 280 SODIUM ACETATE, 20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 69.69350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.29550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 69.69350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.29550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C ACT A 507 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 968 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1003 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 175 REMARK 465 SER A 176 REMARK 465 ALA A 177 REMARK 465 THR A 178 REMARK 465 HIS A 179 REMARK 465 ALA A 180 REMARK 465 GLU A 181 REMARK 465 LEU A 182 REMARK 465 ALA A 470 REMARK 465 LEU A 471 REMARK 465 GLU A 472 REMARK 465 HIS A 473 REMARK 465 HIS A 474 REMARK 465 HIS A 475 REMARK 465 HIS A 476 REMARK 465 HIS A 477 REMARK 465 HIS A 478 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 82 122.64 -173.74 REMARK 500 ASP A 388 114.29 -168.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 328 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 510 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 46 OG1 REMARK 620 2 GLU A 322 OE1 101.6 REMARK 620 3 GLU A 322 OE1 99.9 39.2 REMARK 620 4 HOH A 667 O 95.6 140.6 103.2 REMARK 620 5 HOH A 945 O 75.9 122.4 160.7 96.0 REMARK 620 6 HOH A1010 O 164.9 89.2 95.2 82.2 89.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 204 O REMARK 620 2 LEU A 205 O 75.2 REMARK 620 3 MET A 207 O 94.8 90.2 REMARK 620 4 VAL A 210 O 96.1 170.8 93.4 REMARK 620 5 HOH A 990 O 97.8 96.1 167.0 82.0 REMARK 620 6 HOH A 999 O 170.1 101.0 94.4 87.1 73.3 REMARK 620 N 1 2 3 4 5 DBREF 9CYA A 1 465 UNP Q8ZNC4 DOKDC_SALTY 1 465 SEQADV 9CYA SER A 387 UNP Q8ZNC4 CYS 387 ENGINEERED MUTATION SEQADV 9CYA LEU A 466 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9CYA LEU A 467 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9CYA ALA A 468 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9CYA ALA A 469 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9CYA ALA A 470 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9CYA LEU A 471 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9CYA GLU A 472 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9CYA HIS A 473 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9CYA HIS A 474 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9CYA HIS A 475 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9CYA HIS A 476 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9CYA HIS A 477 UNP Q8ZNC4 EXPRESSION TAG SEQADV 9CYA HIS A 478 UNP Q8ZNC4 EXPRESSION TAG SEQRES 1 A 478 MET THR ASP SER ILE MET GLN ASN TYR ASN GLN LEU ARG SEQRES 2 A 478 GLU GLN VAL ILE ASN GLY ASP ARG ARG PHE GLN HIS LYS SEQRES 3 A 478 ASP GLY HIS LEU CYS PHE GLU GLY VAL ASP LEU ASP ALA SEQRES 4 A 478 LEU ALA ARG GLN TYR PRO THR PRO PHE TYR VAL PHE SER SEQRES 5 A 478 GLU PRO GLU ILE ILE ARG ASN ILE HIS GLU ILE GLN GLN SEQRES 6 A 478 ALA PHE ALA ALA HIS LYS ASN THR LYS THR PHE PHE ALA SEQRES 7 A 478 SER LLP THR CYS SER VAL MET GLY VAL LEU LYS ALA ILE SEQRES 8 A 478 ARG ASP ALA GLY ILE CYS ALA GLU ALA ASN SER GLN TYR SEQRES 9 A 478 GLU VAL ARG LYS CYS LEU GLU ILE GLY PHE ARG GLY ASP SEQRES 10 A 478 GLN ILE VAL PHE ASN GLY VAL VAL LYS LYS PRO ALA ASP SEQRES 11 A 478 LEU GLU TYR ALA ILE ALA ASN ASP LEU TYR LEU ILE ASN SEQRES 12 A 478 VAL ASP SER LEU TYR GLU LEU GLU HIS ILE ASP ALA ILE SEQRES 13 A 478 SER ARG LYS LEU LYS LYS VAL ALA ASN VAL CYS VAL ARG SEQRES 14 A 478 VAL GLU PRO ASN VAL PRO SER ALA THR HIS ALA GLU LEU SEQRES 15 A 478 VAL THR ALA PHE HIS ALA LYS SER GLY LEU ASP LEU GLU SEQRES 16 A 478 GLN ALA GLU GLU THR CYS ARG ARG ILE LEU ALA MET PRO SEQRES 17 A 478 TYR VAL HIS LEU ARG GLY LEU HIS MET HIS VAL GLY ASP SEQRES 18 A 478 GLN VAL PRO GLU SER GLU PRO PHE ALA LYS ALA THR LYS SEQRES 19 A 478 VAL LEU VAL ASP GLU SER ARG ARG LEU GLU GLU VAL LEU SEQRES 20 A 478 GLY ILE LYS PHE ASP LEU ILE ASN VAL GLY GLY GLY ILE SEQRES 21 A 478 PRO VAL PRO TYR LYS TYR ASP ASP GLU ASN GLY ASP PRO SEQRES 22 A 478 LEU LYS ASP ASN MET TYR ALA GLY ILE THR ALA GLN ASP SEQRES 23 A 478 PHE ALA ASP ALA VAL ILE ARG GLU VAL HIS LYS TRP ARG SEQRES 24 A 478 THR ASP VAL GLU ILE CYS ILE GLU PRO GLY ARG LYS VAL SEQRES 25 A 478 THR GLY SER ALA ALA VAL LEU LEU THR GLU VAL SER CYS SEQRES 26 A 478 GLU LYS ARG LYS THR ASN TYR ASP LEU ASN GLY ASN VAL SEQRES 27 A 478 GLU CYS HIS VAL GLU TRP LYS PHE VAL ASP ALA GLY TYR SEQRES 28 A 478 SER VAL LEU SER ASP SER GLN HIS PHE ASP TRP PHE PHE SEQRES 29 A 478 TYR VAL TYR ASN ALA SER ARG MET THR ALA ALA HIS ASP SEQRES 30 A 478 ALA TRP ILE LYS LEU ALA GLY PRO LEU SER ASP GLY GLY SEQRES 31 A 478 ASP TYR PHE HIS MET GLY VAL LYS GLY GLU GLU PHE LEU SEQRES 32 A 478 LEU PRO LYS GLU THR HIS VAL GLY ASP ILE VAL ALA PHE SEQRES 33 A 478 LEU ASP ALA GLY ALA TYR THR ILE GLU SER GLN THR VAL SEQRES 34 A 478 TYR ASN ASN ARG PRO ARG THR GLY VAL VAL MET ILE ASP SEQRES 35 A 478 LYS ASN GLY ASP THR ARG LEU ILE ARG ARG GLU ASP SER SEQRES 36 A 478 TYR GLU ASP MET VAL LYS TYR ASP ILE TYR LEU LEU ALA SEQRES 37 A 478 ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS MODRES 9CYA LLP A 80 LYS MODIFIED RESIDUE HET LLP A 80 41 HET CL A 501 1 HET NA A 502 1 HET PUT A 503 18 HET EPE A 504 32 HET DMS A 505 10 HET DMS A 506 10 HET ACT A 507 7 HET EDO A 508 10 HET EDO A 509 10 HET NA A 510 1 HET GOL A 511 14 HET CL A 512 1 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM PUT 1,4-DIAMINOBUTANE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM DMS DIMETHYL SULFOXIDE HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN PUT PUTRESCINE HETSYN EPE HEPES HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 2 CL 2(CL 1-) FORMUL 3 NA 2(NA 1+) FORMUL 4 PUT C4 H12 N2 FORMUL 5 EPE C8 H18 N2 O4 S FORMUL 6 DMS 2(C2 H6 O S) FORMUL 8 ACT C2 H3 O2 1- FORMUL 9 EDO 2(C2 H6 O2) FORMUL 12 GOL C3 H8 O3 FORMUL 14 HOH *489(H2 O) HELIX 1 AA1 MET A 1 ASN A 18 1 18 HELIX 2 AA2 LEU A 37 TYR A 44 1 8 HELIX 3 AA3 GLU A 53 PHE A 67 1 15 HELIX 4 AA4 LLP A 80 CYS A 82 5 3 HELIX 5 AA5 VAL A 84 ALA A 94 1 11 HELIX 6 AA6 SER A 102 GLY A 113 1 12 HELIX 7 AA7 ARG A 115 ASP A 117 5 3 HELIX 8 AA8 LYS A 127 ASN A 137 1 11 HELIX 9 AA9 SER A 146 LYS A 161 1 16 HELIX 10 AB1 THR A 184 ALA A 188 1 5 HELIX 11 AB2 ASP A 193 GLU A 195 5 3 HELIX 12 AB3 GLN A 196 MET A 207 1 12 HELIX 13 AB4 SER A 226 GLY A 248 1 23 HELIX 14 AB5 ASP A 267 GLY A 271 5 5 HELIX 15 AB6 THR A 283 LYS A 297 1 15 HELIX 16 AB7 GLY A 309 GLY A 314 1 6 HELIX 17 AB8 SER A 355 PHE A 360 1 6 HELIX 18 AB9 SER A 370 MET A 372 5 3 HELIX 19 AC1 VAL A 429 ARG A 433 5 5 HELIX 20 AC2 SER A 455 TYR A 462 1 8 SHEET 1 AA1 3 PHE A 23 LYS A 26 0 SHEET 2 AA1 3 HIS A 29 PHE A 32 -1 O HIS A 29 N LYS A 26 SHEET 3 AA1 3 VAL A 35 ASP A 36 -1 O VAL A 35 N PHE A 32 SHEET 1 AA2 6 VAL A 366 ASN A 368 0 SHEET 2 AA2 6 ILE A 413 PHE A 416 -1 O ALA A 415 N TYR A 367 SHEET 3 AA2 6 ALA A 317 TYR A 332 -1 N THR A 321 O VAL A 414 SHEET 4 AA2 6 VAL A 338 VAL A 347 -1 O VAL A 342 N LYS A 329 SHEET 5 AA2 6 ALA A 378 ALA A 383 1 O ALA A 383 N VAL A 347 SHEET 6 AA2 6 PHE A 402 LEU A 404 -1 O PHE A 402 N ILE A 380 SHEET 1 AA3 6 VAL A 366 ASN A 368 0 SHEET 2 AA3 6 ILE A 413 PHE A 416 -1 O ALA A 415 N TYR A 367 SHEET 3 AA3 6 ALA A 317 TYR A 332 -1 N THR A 321 O VAL A 414 SHEET 4 AA3 6 PHE A 48 SER A 52 -1 N PHE A 48 O LEU A 320 SHEET 5 AA3 6 GLY A 437 ILE A 441 1 O VAL A 439 N TYR A 49 SHEET 6 AA3 6 THR A 447 ARG A 451 -1 O ILE A 450 N VAL A 438 SHEET 1 AA4 9 THR A 73 ALA A 78 0 SHEET 2 AA4 9 CYS A 97 ALA A 100 1 O GLU A 99 N PHE A 77 SHEET 3 AA4 9 ILE A 119 PHE A 121 1 O VAL A 120 N ALA A 100 SHEET 4 AA4 9 LEU A 141 VAL A 144 1 O LEU A 141 N PHE A 121 SHEET 5 AA4 9 ALA A 164 ARG A 169 1 O ARG A 169 N VAL A 144 SHEET 6 AA4 9 VAL A 210 HIS A 216 1 O ARG A 213 N VAL A 166 SHEET 7 AA4 9 LEU A 253 ASN A 255 1 O ASN A 255 N LEU A 215 SHEET 8 AA4 9 GLU A 303 ILE A 306 1 O CYS A 305 N ILE A 254 SHEET 9 AA4 9 THR A 73 ALA A 78 1 N PHE A 76 O ILE A 306 LINK C ASER A 79 N LLP A 80 1555 1555 1.33 LINK C BSER A 79 N LLP A 80 1555 1555 1.33 LINK C LLP A 80 N THR A 81 1555 1555 1.35 LINK OG1 THR A 46 NA NA A 510 1555 1555 2.50 LINK O ILE A 204 NA NA A 502 1555 1555 2.45 LINK O LEU A 205 NA NA A 502 1555 1555 3.01 LINK O MET A 207 NA NA A 502 1555 1555 2.48 LINK O VAL A 210 NA NA A 502 1555 1555 2.35 LINK OE1AGLU A 322 NA NA A 510 1555 1555 2.58 LINK OE1BGLU A 322 NA NA A 510 1555 1555 2.34 LINK NA NA A 502 O HOH A 990 1555 1555 2.91 LINK NA NA A 502 O HOH A 999 1555 1555 2.43 LINK NA NA A 510 O HOH A 667 1555 1555 2.56 LINK NA NA A 510 O HOH A 945 1555 1555 2.48 LINK NA NA A 510 O HOH A1010 1555 1555 2.40 CISPEP 1 THR A 46 PRO A 47 0 -4.16 CRYST1 139.387 50.591 73.308 90.00 120.88 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007174 0.000000 0.004290 0.00000 SCALE2 0.000000 0.019766 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015894 0.00000 CONECT 748 8019 CONECT 1372 1405 CONECT 1373 1405 CONECT 1390 1391 1398 CONECT 1391 1390 1392 1393 CONECT 1392 1391 1414 1415 1416 CONECT 1393 1391 1394 1395 CONECT 1394 1393 CONECT 1395 1393 1396 1397 CONECT 1396 1395 1411 1417 CONECT 1397 1395 1398 1399 CONECT 1398 1390 1397 1418 CONECT 1399 1397 1400 1419 1420 CONECT 1400 1399 1401 CONECT 1401 1400 1402 1403 1404 CONECT 1402 1401 CONECT 1403 1401 CONECT 1404 1401 CONECT 1405 1372 1373 1406 1421 CONECT 1406 1405 1407 1412 1422 CONECT 1407 1406 1408 1423 1424 CONECT 1408 1407 1409 1425 1426 CONECT 1409 1408 1410 1427 1428 CONECT 1410 1409 1411 1429 1430 CONECT 1411 1396 1410 CONECT 1412 1406 1413 1431 CONECT 1413 1412 CONECT 1414 1392 CONECT 1415 1392 CONECT 1416 1392 CONECT 1417 1396 CONECT 1418 1398 CONECT 1419 1399 CONECT 1420 1399 CONECT 1421 1405 CONECT 1422 1406 CONECT 1423 1407 CONECT 1424 1407 CONECT 1425 1408 CONECT 1426 1408 CONECT 1427 1409 CONECT 1428 1409 CONECT 1429 1410 CONECT 1430 1410 CONECT 1431 1412 CONECT 3415 7921 CONECT 3434 7921 CONECT 3463 7921 CONECT 3533 7921 CONECT 5422 8019 CONECT 5423 8019 CONECT 7921 3415 3434 3463 3533 CONECT 7921 8424 8433 CONECT 7922 7923 7928 7929 CONECT 7923 7922 7924 7930 7931 CONECT 7924 7923 7925 7932 7933 CONECT 7925 7924 7926 7934 7935 CONECT 7926 7925 7927 7936 7937 CONECT 7927 7926 7938 7939 CONECT 7928 7922 CONECT 7929 7922 CONECT 7930 7923 CONECT 7931 7923 CONECT 7932 7924 CONECT 7933 7924 CONECT 7934 7925 CONECT 7935 7925 CONECT 7936 7926 CONECT 7937 7926 CONECT 7938 7927 CONECT 7939 7927 CONECT 7940 7941 7945 7949 CONECT 7941 7940 7942 7955 7956 CONECT 7942 7941 7943 7957 7958 CONECT 7943 7942 7944 7946 CONECT 7944 7943 7945 7959 7960 CONECT 7945 7940 7944 7961 7962 CONECT 7946 7943 7947 7963 7964 CONECT 7947 7946 7948 7965 7966 CONECT 7948 7947 7967 CONECT 7949 7940 7950 7968 7969 CONECT 7950 7949 7951 7970 7971 CONECT 7951 7950 7952 7953 7954 CONECT 7952 7951 CONECT 7953 7951 CONECT 7954 7951 CONECT 7955 7941 CONECT 7956 7941 CONECT 7957 7942 CONECT 7958 7942 CONECT 7959 7944 CONECT 7960 7944 CONECT 7961 7945 CONECT 7962 7945 CONECT 7963 7946 CONECT 7964 7946 CONECT 7965 7947 CONECT 7966 7947 CONECT 7967 7948 CONECT 7968 7949 CONECT 7969 7949 CONECT 7970 7950 CONECT 7971 7950 CONECT 7972 7973 7974 7975 CONECT 7973 7972 CONECT 7974 7972 7976 7977 7978 CONECT 7975 7972 7979 7980 7981 CONECT 7976 7974 CONECT 7977 7974 CONECT 7978 7974 CONECT 7979 7975 CONECT 7980 7975 CONECT 7981 7975 CONECT 7982 7983 7984 7985 CONECT 7983 7982 CONECT 7984 7982 7986 7987 7988 CONECT 7985 7982 7989 7990 7991 CONECT 7986 7984 CONECT 7987 7984 CONECT 7988 7984 CONECT 7989 7985 CONECT 7990 7985 CONECT 7991 7985 CONECT 7992 7993 7994 7995 CONECT 7993 7992 CONECT 7994 7992 CONECT 7995 7992 7996 7997 7998 CONECT 7996 7995 CONECT 7997 7995 CONECT 7998 7995 CONECT 7999 8000 8001 8003 8004 CONECT 8000 7999 8005 CONECT 8001 7999 8002 8006 8007 CONECT 8002 8001 8008 CONECT 8003 7999 CONECT 8004 7999 CONECT 8005 8000 CONECT 8006 8001 CONECT 8007 8001 CONECT 8008 8002 CONECT 8009 8010 8011 8013 8014 CONECT 8010 8009 8015 CONECT 8011 8009 8012 8016 8017 CONECT 8012 8011 8018 CONECT 8013 8009 CONECT 8014 8009 CONECT 8015 8010 CONECT 8016 8011 CONECT 8017 8011 CONECT 8018 8012 CONECT 8019 748 5422 5423 8101 CONECT 8019 8379 8444 CONECT 8020 8021 8022 8026 8027 CONECT 8021 8020 8028 CONECT 8022 8020 8023 8024 8029 CONECT 8023 8022 8030 CONECT 8024 8022 8025 8031 8032 CONECT 8025 8024 8033 CONECT 8026 8020 CONECT 8027 8020 CONECT 8028 8021 CONECT 8029 8022 CONECT 8030 8023 CONECT 8031 8024 CONECT 8032 8024 CONECT 8033 8025 CONECT 8101 8019 CONECT 8379 8019 CONECT 8424 7921 CONECT 8433 7921 CONECT 8444 8019 MASTER 440 0 13 20 24 0 0 6 4225 1 171 37 END