HEADER TRANSFERASE 03-AUG-24 9CYZ TITLE CRYSTAL STRUCTURE OF HUMAN FARNESYL PYROPHOSPHATE SYNTHASE IN COMPLEX TITLE 2 WITH A CRYPTIC POCKET LIGAND, CL02134 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: F; COMPND 4 FRAGMENT: RESIDUES 67-419; COMPND 5 SYNONYM: FPS,(2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE, COMPND 6 DIMETHYLALLYLTRANSTRANSFERASE,FARNESYL DIPHOSPHATE SYNTHASE, COMPND 7 GERANYLTRANSTRANSFERASE; COMPND 8 EC: 2.5.1.10,2.5.1.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRANSFERASE, ENZYME-LIGAND COMPLEX, CRYPTIC POCKET BINDER, ISOPRENOID KEYWDS 2 BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR V.R.PANDYA,J.PARK REVDAT 2 08-APR-26 9CYZ 1 JRNL REVDAT 1 29-OCT-25 9CYZ 0 JRNL AUTH V.PANDYA,K.A.WILSON,C.Y.LEUNG,Y.S.TSANTRIZOS,J.PARK JRNL TITL DISCOVERY AND COMPUTATIONAL CHARACTERIZATION OF A NOVEL JRNL TITL 2 CRYPTIC POCKET IN HUMAN FARNESYL PYROPHOSPHATE SYNTHASE. JRNL REF J.STRUCT.BIOL. 08316 2026 JRNL REFN ESSN 1095-8657 JRNL PMID 41865847 JRNL DOI 10.1016/J.JSB.2026.108316 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 21810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.181 REMARK 3 FREE R VALUE TEST SET COUNT : 1130 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1508 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2675 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 106 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.80700 REMARK 3 B22 (A**2) : -4.80700 REMARK 3 B33 (A**2) : 9.61400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.222 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.191 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.273 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2842 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2610 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3877 ; 1.627 ; 1.833 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5986 ; 0.521 ; 1.741 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 334 ; 6.249 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 18 ;10.402 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 446 ;14.436 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 430 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3269 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 654 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 657 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 85 ; 0.166 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1407 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 116 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1345 ; 3.118 ; 4.652 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1345 ; 3.109 ; 4.652 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1676 ; 4.463 ; 8.350 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1677 ; 4.462 ; 8.352 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1497 ; 4.366 ; 5.307 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1498 ; 4.365 ; 5.309 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2192 ; 6.369 ; 9.648 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2193 ; 6.368 ; 9.649 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 8 F 179 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1758 84.6715 16.4420 REMARK 3 T TENSOR REMARK 3 T11: 0.0987 T22: 0.1412 REMARK 3 T33: 0.1258 T12: -0.0854 REMARK 3 T13: -0.1052 T23: 0.0702 REMARK 3 L TENSOR REMARK 3 L11: 5.4927 L22: 2.5773 REMARK 3 L33: 2.7794 L12: 0.3670 REMARK 3 L13: -2.0762 L23: -0.2573 REMARK 3 S TENSOR REMARK 3 S11: -0.0237 S12: 0.4578 S13: -0.2499 REMARK 3 S21: -0.4187 S22: 0.2230 S23: 0.4269 REMARK 3 S31: 0.2744 S32: -0.6015 S33: -0.1993 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 184 F 350 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9370 75.9031 39.1623 REMARK 3 T TENSOR REMARK 3 T11: 0.1367 T22: 0.2920 REMARK 3 T33: 0.0880 T12: -0.0235 REMARK 3 T13: 0.0147 T23: 0.0570 REMARK 3 L TENSOR REMARK 3 L11: 4.0672 L22: 4.4514 REMARK 3 L33: 3.7857 L12: -0.9316 REMARK 3 L13: 0.6891 L23: -2.2780 REMARK 3 S TENSOR REMARK 3 S11: 0.0400 S12: -0.4191 S13: -0.4088 REMARK 3 S21: 0.3099 S22: -0.0394 S23: -0.0102 REMARK 3 S31: 0.3048 S32: 0.2807 S33: -0.0006 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9CYZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1000286401. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21853 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 55.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.80 REMARK 200 R MERGE FOR SHELL (I) : 1.04300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.085 M TRI-SODIUM CITRATE (PH 5.6), REMARK 280 0.425 M AMMONIUM SULFATE, 0.85 M LITHIUM SULFATE, 15% (V/V) REMARK 280 GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.75000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.37500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.37500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.37500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.37500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.37500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.12500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.37500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.37500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 19.37500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.37500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.37500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.12500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.75000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 110.75000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 110.75000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 38.75000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET F -21 REMARK 465 GLY F -20 REMARK 465 SER F -19 REMARK 465 SER F -18 REMARK 465 HIS F -17 REMARK 465 HIS F -16 REMARK 465 HIS F -15 REMARK 465 HIS F -14 REMARK 465 HIS F -13 REMARK 465 HIS F -12 REMARK 465 SER F -11 REMARK 465 SER F -10 REMARK 465 GLY F -9 REMARK 465 ARG F -8 REMARK 465 GLU F -7 REMARK 465 ASN F -6 REMARK 465 LEU F -5 REMARK 465 TYR F -4 REMARK 465 PHE F -3 REMARK 465 GLN F -2 REMARK 465 GLY F -1 REMARK 465 HIS F 0 REMARK 465 MET F 1 REMARK 465 ASN F 2 REMARK 465 GLY F 3 REMARK 465 ASP F 4 REMARK 465 GLN F 5 REMARK 465 ASN F 6 REMARK 465 SER F 7 REMARK 465 ASP F 31 REMARK 465 GLU F 32 REMARK 465 GLN F 180 REMARK 465 GLY F 181 REMARK 465 ASN F 182 REMARK 465 VAL F 183 REMARK 465 ARG F 351 REMARK 465 ARG F 352 REMARK 465 LYS F 353 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU F 30 CG CD OE1 OE2 REMARK 470 MET F 33 CG SD CE REMARK 470 LYS F 57 CD CE NZ REMARK 470 GLU F 73 CD OE1 OE2 REMARK 470 ARG F 75 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 76 CE NZ REMARK 470 LYS F 191 CG CD CE NZ REMARK 470 LYS F 257 CG CD CE NZ REMARK 470 LYS F 293 CG CD CE NZ REMARK 470 GLU F 296 CD OE1 OE2 REMARK 470 LYS F 297 CD CE NZ REMARK 470 ARG F 300 CG CD NE CZ NH1 NH2 REMARK 470 ARG F 346 CD NE CZ NH1 NH2 REMARK 470 LYS F 350 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH F 583 O HOH F 591 2.02 REMARK 500 OE1 GLN F 284 O HOH F 501 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN F 77 55.45 -114.69 REMARK 500 VAL F 124 -67.17 -99.88 REMARK 500 THR F 260 24.10 -141.18 REMARK 500 ASN F 265 39.70 71.23 REMARK 500 REMARK 500 REMARK: NULL DBREF 9CYZ F 1 353 UNP P14324 FPPS_HUMAN 67 419 SEQADV 9CYZ MET F -21 UNP P14324 INITIATING METHIONINE SEQADV 9CYZ GLY F -20 UNP P14324 EXPRESSION TAG SEQADV 9CYZ SER F -19 UNP P14324 EXPRESSION TAG SEQADV 9CYZ SER F -18 UNP P14324 EXPRESSION TAG SEQADV 9CYZ HIS F -17 UNP P14324 EXPRESSION TAG SEQADV 9CYZ HIS F -16 UNP P14324 EXPRESSION TAG SEQADV 9CYZ HIS F -15 UNP P14324 EXPRESSION TAG SEQADV 9CYZ HIS F -14 UNP P14324 EXPRESSION TAG SEQADV 9CYZ HIS F -13 UNP P14324 EXPRESSION TAG SEQADV 9CYZ HIS F -12 UNP P14324 EXPRESSION TAG SEQADV 9CYZ SER F -11 UNP P14324 EXPRESSION TAG SEQADV 9CYZ SER F -10 UNP P14324 EXPRESSION TAG SEQADV 9CYZ GLY F -9 UNP P14324 EXPRESSION TAG SEQADV 9CYZ ARG F -8 UNP P14324 EXPRESSION TAG SEQADV 9CYZ GLU F -7 UNP P14324 EXPRESSION TAG SEQADV 9CYZ ASN F -6 UNP P14324 EXPRESSION TAG SEQADV 9CYZ LEU F -5 UNP P14324 EXPRESSION TAG SEQADV 9CYZ TYR F -4 UNP P14324 EXPRESSION TAG SEQADV 9CYZ PHE F -3 UNP P14324 EXPRESSION TAG SEQADV 9CYZ GLN F -2 UNP P14324 EXPRESSION TAG SEQADV 9CYZ GLY F -1 UNP P14324 EXPRESSION TAG SEQADV 9CYZ HIS F 0 UNP P14324 EXPRESSION TAG SEQRES 1 F 375 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 F 375 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASN GLY ASP SEQRES 3 F 375 GLN ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP PHE SEQRES 4 F 375 VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR GLU SEQRES 5 F 375 ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE ALA SEQRES 6 F 375 ARG LEU LYS GLU VAL LEU GLU TYR ASN ALA ILE GLY GLY SEQRES 7 F 375 LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE ARG SEQRES 8 F 375 GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER LEU SEQRES 9 F 375 GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU LEU SEQRES 10 F 375 GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SER SEQRES 11 F 375 SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN LYS SEQRES 12 F 375 PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN LEU SEQRES 13 F 375 LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR CYS SEQRES 14 F 375 ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU PHE SEQRES 15 F 375 LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR LEU SEQRES 16 F 375 ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU VAL SEQRES 17 F 375 ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS TYR SEQRES 18 F 375 LYS THR ALA PHE TYR SER PHE TYR LEU PRO ILE ALA ALA SEQRES 19 F 375 ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU HIS SEQRES 20 F 375 ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU PHE SEQRES 21 F 375 PHE GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY ASP SEQRES 22 F 375 PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN ASP SEQRES 23 F 375 ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN ARG SEQRES 24 F 375 ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN TYR SEQRES 25 F 375 GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS ALA SEQRES 26 F 375 LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU GLN SEQRES 27 F 375 TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU ILE SEQRES 28 F 375 GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE LEU SEQRES 29 F 375 GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS HET GOL F 401 6 HET SO4 F 402 10 HET SO4 F 403 5 HET YL2 F 404 28 HET YL2 F 405 28 HET YL2 F 406 28 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM YL2 ({[6-(4-CYCLOPROPYLPHENYL)THIENO[2,3-D]PYRIMIDIN-4- HETNAM 2 YL2 YL]AMINO}METHANEDIYL)BIS(PHOSPHONIC ACID) HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 YL2 3(C16 H17 N3 O6 P2 S) FORMUL 8 HOH *106(H2 O) HELIX 1 AA1 ASP F 8 LEU F 28 1 21 HELIX 2 AA2 HIS F 35 GLU F 37 5 3 HELIX 3 AA3 ILE F 38 ALA F 53 1 16 HELIX 4 AA4 TYR F 58 VAL F 72 1 15 HELIX 5 AA5 GLU F 73 GLN F 77 5 5 HELIX 6 AA6 ASP F 78 SER F 108 1 31 HELIX 7 AA7 CYS F 117 LYS F 121 5 5 HELIX 8 AA8 VAL F 124 LEU F 126 5 3 HELIX 9 AA9 ASP F 127 ARG F 148 1 22 HELIX 10 AB1 TYR F 152 ALA F 178 1 27 HELIX 11 AB2 ASP F 184 PHE F 188 5 5 HELIX 12 AB3 THR F 189 THR F 201 1 13 HELIX 13 AB4 THR F 201 PHE F 206 1 6 HELIX 14 AB5 PHE F 206 ALA F 217 1 12 HELIX 15 AB6 GLY F 221 GLY F 250 1 30 HELIX 16 AB7 ASP F 251 GLY F 256 1 6 HELIX 17 AB8 SER F 268 ALA F 278 1 11 HELIX 18 AB9 THR F 279 TYR F 290 1 12 HELIX 19 AC1 GLU F 294 LEU F 308 1 15 HELIX 20 AC2 ASP F 309 ALA F 333 1 25 HELIX 21 AC3 PRO F 337 TYR F 349 1 13 CISPEP 1 ALA F 334 PRO F 335 0 6.50 CRYST1 110.750 110.750 77.500 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009029 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009029 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012903 0.00000 CONECT 2677 2678 2679 CONECT 2678 2677 CONECT 2679 2677 2680 2681 CONECT 2680 2679 CONECT 2681 2679 2682 CONECT 2682 2681 CONECT 2683 2685 2687 2689 2691 CONECT 2684 2686 2688 2690 2692 CONECT 2685 2683 CONECT 2686 2684 CONECT 2687 2683 CONECT 2688 2684 CONECT 2689 2683 CONECT 2690 2684 CONECT 2691 2683 CONECT 2692 2684 CONECT 2693 2694 2695 2696 2697 CONECT 2694 2693 CONECT 2695 2693 CONECT 2696 2693 CONECT 2697 2693 CONECT 2698 2699 CONECT 2699 2698 2700 2701 2702 CONECT 2700 2699 CONECT 2701 2699 CONECT 2702 2699 2703 2707 CONECT 2703 2702 2704 2705 2706 CONECT 2704 2703 CONECT 2705 2703 CONECT 2706 2703 CONECT 2707 2702 2708 CONECT 2708 2707 2709 2714 CONECT 2709 2708 2710 CONECT 2710 2709 2711 CONECT 2711 2710 2712 CONECT 2712 2711 2713 2714 CONECT 2713 2712 2716 CONECT 2714 2708 2712 2715 CONECT 2715 2714 2716 CONECT 2716 2713 2715 2717 CONECT 2717 2716 2718 2720 CONECT 2718 2717 2719 CONECT 2719 2718 2722 CONECT 2720 2717 2721 CONECT 2721 2720 2722 CONECT 2722 2719 2721 2723 CONECT 2723 2722 2724 2725 CONECT 2724 2723 2725 CONECT 2725 2723 2724 CONECT 2726 2727 CONECT 2727 2726 2728 2729 2730 CONECT 2728 2727 CONECT 2729 2727 CONECT 2730 2727 2731 2735 CONECT 2731 2730 2732 2733 2734 CONECT 2732 2731 CONECT 2733 2731 CONECT 2734 2731 CONECT 2735 2730 2736 CONECT 2736 2735 2737 2742 CONECT 2737 2736 2738 CONECT 2738 2737 2739 CONECT 2739 2738 2740 CONECT 2740 2739 2741 2742 CONECT 2741 2740 2744 CONECT 2742 2736 2740 2743 CONECT 2743 2742 2744 CONECT 2744 2741 2743 2745 CONECT 2745 2744 2746 2748 CONECT 2746 2745 2747 CONECT 2747 2746 2750 CONECT 2748 2745 2749 CONECT 2749 2748 2750 CONECT 2750 2747 2749 2751 CONECT 2751 2750 2752 2753 CONECT 2752 2751 2753 CONECT 2753 2751 2752 CONECT 2754 2755 CONECT 2755 2754 2756 2757 2758 CONECT 2756 2755 CONECT 2757 2755 CONECT 2758 2755 2759 2763 CONECT 2759 2758 2760 2761 2762 CONECT 2760 2759 CONECT 2761 2759 CONECT 2762 2759 CONECT 2763 2758 2764 CONECT 2764 2763 2765 2770 CONECT 2765 2764 2766 CONECT 2766 2765 2767 CONECT 2767 2766 2768 CONECT 2768 2767 2769 2770 CONECT 2769 2768 2772 CONECT 2770 2764 2768 2771 CONECT 2771 2770 2772 CONECT 2772 2769 2771 2773 CONECT 2773 2772 2774 2776 CONECT 2774 2773 2775 CONECT 2775 2774 2778 CONECT 2776 2773 2777 CONECT 2777 2776 2778 CONECT 2778 2775 2777 2779 CONECT 2779 2778 2780 2781 CONECT 2780 2779 2781 CONECT 2781 2779 2780 MASTER 392 0 6 21 0 0 0 6 2881 1 105 29 END