HEADER LIGASE 07-AUG-24 9D1I TITLE STRUCTURE OF UBIQUITIN BOUND TO KLHDC3-ELOB/C COMPND MOL_ID: 1; COMPND 2 MOLECULE: KELCH DOMAIN-CONTAINING PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TESTIS INTRACELLULAR MEDIATOR PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ELONGIN-B; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: ELOB,ELONGIN 18 KDA SUBUNIT,RNA POLYMERASE II TRANSCRIPTION COMPND 10 FACTOR SIII SUBUNIT B,SIII P18,TRANSCRIPTION ELONGATION FACTOR B COMPND 11 POLYPEPTIDE 2; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: ELONGIN-C; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: ELOC,ELONGIN 15 KDA SUBUNIT,RNA POLYMERASE II TRANSCRIPTION COMPND 17 FACTOR SIII SUBUNIT C,SIII P15,TRANSCRIPTION ELONGATION FACTOR B COMPND 18 POLYPEPTIDE 1; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: UBIQUITIN; COMPND 22 CHAIN: D; COMPND 23 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KLHDC3, PEAS; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: ELOB, TCEB2; SOURCE 13 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: ELOC, TCEB1; SOURCE 20 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 GENE: UBB; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KLHDC3, UBIQUITIN, C-DEGRON, CULLIN-RING, E3, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR B.A.SCHULMAN,D.C.SCOTT REVDAT 1 20-NOV-24 9D1I 0 JRNL AUTH D.C.SCOTT,S.CHITTORI,N.PURSER,M.T.KING,S.MAIWALD,K.CHURION, JRNL AUTH 2 A.NOURSE,C.LEE,J.A.PAULO,D.J.MILLER,S.J.ELLEDGE,J.W.HARPER, JRNL AUTH 3 G.KLEIGER,B.A.SCHULMAN JRNL TITL STRUCTURAL BASIS FOR C-DEGRON SELECTIVITY ACROSS JRNL TITL 2 KLHDCX-FAMILY E3 UBIQUITIN LIGASES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21_5207 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 70047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2900 - 5.8500 0.94 2766 128 0.1820 0.1850 REMARK 3 2 5.8400 - 4.6400 0.99 2765 150 0.1519 0.1864 REMARK 3 3 4.6400 - 4.0500 0.99 2743 158 0.1240 0.1501 REMARK 3 4 4.0500 - 3.6800 0.99 2764 139 0.1452 0.1696 REMARK 3 5 3.6800 - 3.4200 1.00 2766 133 0.1615 0.1689 REMARK 3 6 3.4200 - 3.2200 0.99 2673 175 0.1665 0.1696 REMARK 3 7 3.2200 - 3.0600 0.99 2711 150 0.1690 0.1940 REMARK 3 8 3.0600 - 2.9200 0.99 2736 160 0.1754 0.1748 REMARK 3 9 2.9200 - 2.8100 0.99 2688 137 0.1785 0.2006 REMARK 3 10 2.8100 - 2.7200 0.99 2704 154 0.1710 0.2062 REMARK 3 11 2.7100 - 2.6300 0.99 2712 145 0.1746 0.2105 REMARK 3 12 2.6300 - 2.5500 0.98 2690 130 0.1817 0.2378 REMARK 3 13 2.5500 - 2.4900 0.98 2678 131 0.1902 0.2356 REMARK 3 14 2.4900 - 2.4300 0.98 2655 154 0.1854 0.2346 REMARK 3 15 2.4300 - 2.3700 0.97 2683 137 0.1829 0.2277 REMARK 3 16 2.3700 - 2.3200 0.97 2626 141 0.1690 0.1894 REMARK 3 17 2.3200 - 2.2700 0.97 2655 134 0.1675 0.2038 REMARK 3 18 2.2700 - 2.2300 0.97 2641 143 0.1717 0.1895 REMARK 3 19 2.2300 - 2.1900 0.97 2605 132 0.1784 0.1658 REMARK 3 20 2.1900 - 2.1500 0.96 2617 134 0.1730 0.2442 REMARK 3 21 2.1500 - 2.1200 0.95 2598 144 0.1779 0.2178 REMARK 3 22 2.1200 - 2.0900 0.95 2572 127 0.1915 0.2525 REMARK 3 23 2.0900 - 2.0600 0.94 2573 120 0.1975 0.2258 REMARK 3 24 2.0600 - 2.0300 0.92 2495 131 0.2221 0.1945 REMARK 3 25 2.0300 - 2.0000 0.88 2412 132 0.2449 0.2398 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5039 REMARK 3 ANGLE : 0.899 6845 REMARK 3 CHIRALITY : 0.058 752 REMARK 3 PLANARITY : 0.008 888 REMARK 3 DIHEDRAL : 15.841 1811 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 23 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7984 -9.8494 -13.9350 REMARK 3 T TENSOR REMARK 3 T11: 0.2174 T22: 0.2112 REMARK 3 T33: 0.1974 T12: -0.0328 REMARK 3 T13: -0.0093 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 3.0385 L22: 1.8071 REMARK 3 L33: 1.4761 L12: -1.5275 REMARK 3 L13: 0.3827 L23: -0.5544 REMARK 3 S TENSOR REMARK 3 S11: 0.0631 S12: -0.0357 S13: -0.1304 REMARK 3 S21: -0.1709 S22: 0.0600 S23: 0.0777 REMARK 3 S31: 0.0385 S32: -0.1828 S33: -0.1271 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.6546 -6.0288 -19.4342 REMARK 3 T TENSOR REMARK 3 T11: 0.2468 T22: 0.3984 REMARK 3 T33: 0.3175 T12: -0.0264 REMARK 3 T13: -0.0786 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 2.6123 L22: 4.3768 REMARK 3 L33: 1.9841 L12: -0.1290 REMARK 3 L13: -1.8353 L23: 1.1776 REMARK 3 S TENSOR REMARK 3 S11: -0.0356 S12: 0.4997 S13: -0.0370 REMARK 3 S21: -0.5708 S22: -0.0382 S23: 0.7575 REMARK 3 S31: -0.0893 S32: -0.7398 S33: 0.0314 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.1353 -4.9870 -7.3090 REMARK 3 T TENSOR REMARK 3 T11: 0.1773 T22: 0.3297 REMARK 3 T33: 0.3023 T12: 0.0077 REMARK 3 T13: 0.0460 T23: 0.0677 REMARK 3 L TENSOR REMARK 3 L11: 5.0028 L22: 5.9020 REMARK 3 L33: 2.9574 L12: -3.0818 REMARK 3 L13: 0.9260 L23: -0.0148 REMARK 3 S TENSOR REMARK 3 S11: -0.0452 S12: -0.3193 S13: -0.5608 REMARK 3 S21: 0.0510 S22: 0.2290 S23: 1.0030 REMARK 3 S31: -0.1222 S32: -0.7281 S33: -0.1533 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.7254 5.3578 -16.5150 REMARK 3 T TENSOR REMARK 3 T11: 0.2465 T22: 0.2508 REMARK 3 T33: 0.2476 T12: 0.0666 REMARK 3 T13: -0.0095 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: 2.4313 L22: 3.8428 REMARK 3 L33: 3.9547 L12: 1.1495 REMARK 3 L13: 0.1139 L23: 0.6514 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: 0.1031 S13: 0.1003 REMARK 3 S21: -0.0217 S22: 0.0764 S23: 0.3176 REMARK 3 S31: -0.1823 S32: -0.3217 S33: -0.0962 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9853 8.7956 -17.2575 REMARK 3 T TENSOR REMARK 3 T11: 0.1986 T22: 0.3232 REMARK 3 T33: 0.2607 T12: 0.0464 REMARK 3 T13: -0.0386 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 2.1396 L22: 5.0544 REMARK 3 L33: 4.2608 L12: -1.1773 REMARK 3 L13: -1.2254 L23: -0.7500 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: 0.2180 S13: -0.0224 REMARK 3 S21: -0.3117 S22: 0.0284 S23: 0.2598 REMARK 3 S31: -0.3419 S32: -0.7272 S33: 0.0096 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5402 7.9218 -28.6342 REMARK 3 T TENSOR REMARK 3 T11: 0.3247 T22: 0.2307 REMARK 3 T33: 0.2046 T12: -0.0162 REMARK 3 T13: 0.0199 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 1.6219 L22: 1.7870 REMARK 3 L33: 1.6520 L12: -0.5816 REMARK 3 L13: 0.1229 L23: -0.3132 REMARK 3 S TENSOR REMARK 3 S11: 0.0254 S12: 0.2062 S13: 0.1429 REMARK 3 S21: -0.3163 S22: 0.0090 S23: -0.0843 REMARK 3 S31: -0.1248 S32: -0.0745 S33: -0.0354 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 281 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8551 -6.7726 -26.7228 REMARK 3 T TENSOR REMARK 3 T11: 0.2620 T22: 0.1925 REMARK 3 T33: 0.1975 T12: 0.0081 REMARK 3 T13: 0.0659 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 5.1879 L22: 3.4893 REMARK 3 L33: 3.5295 L12: 1.2410 REMARK 3 L13: 2.0758 L23: 0.1945 REMARK 3 S TENSOR REMARK 3 S11: 0.0832 S12: 0.1963 S13: -0.1594 REMARK 3 S21: -0.1964 S22: -0.0443 S23: -0.2682 REMARK 3 S31: 0.2968 S32: 0.1140 S33: -0.0628 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 282 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8654 -11.5546 -18.3840 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.1521 REMARK 3 T33: 0.1816 T12: -0.0127 REMARK 3 T13: 0.0127 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 5.3010 L22: 1.5774 REMARK 3 L33: 5.0720 L12: 0.2226 REMARK 3 L13: 3.3727 L23: -0.2200 REMARK 3 S TENSOR REMARK 3 S11: 0.0778 S12: 0.1003 S13: -0.2502 REMARK 3 S21: -0.1288 S22: -0.0415 S23: -0.0647 REMARK 3 S31: 0.1242 S32: -0.0113 S33: -0.0365 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 307 THROUGH 348 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7960 -18.5176 -15.2755 REMARK 3 T TENSOR REMARK 3 T11: 0.2072 T22: 0.1498 REMARK 3 T33: 0.2092 T12: 0.0004 REMARK 3 T13: 0.0349 T23: -0.0307 REMARK 3 L TENSOR REMARK 3 L11: 4.7892 L22: 2.7011 REMARK 3 L33: 5.2644 L12: -2.0345 REMARK 3 L13: 3.5768 L23: -3.0793 REMARK 3 S TENSOR REMARK 3 S11: 0.0819 S12: 0.1274 S13: -0.2817 REMARK 3 S21: -0.2861 S22: -0.0214 S23: 0.0529 REMARK 3 S31: 0.3614 S32: -0.0193 S33: -0.0885 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 349 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9148 -24.8731 -3.5868 REMARK 3 T TENSOR REMARK 3 T11: 0.2433 T22: 0.2549 REMARK 3 T33: 0.3574 T12: -0.0616 REMARK 3 T13: 0.0196 T23: 0.0633 REMARK 3 L TENSOR REMARK 3 L11: 3.9961 L22: 4.2240 REMARK 3 L33: 2.9151 L12: -2.3127 REMARK 3 L13: 1.5356 L23: -1.8724 REMARK 3 S TENSOR REMARK 3 S11: 0.0479 S12: -0.2489 S13: -0.4283 REMARK 3 S21: -0.0938 S22: 0.1155 S23: 0.0958 REMARK 3 S31: 0.3252 S32: -0.2078 S33: -0.2306 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0474 -23.3676 -2.5954 REMARK 3 T TENSOR REMARK 3 T11: 0.1575 T22: 0.2957 REMARK 3 T33: 0.4427 T12: 0.0127 REMARK 3 T13: 0.0330 T23: 0.0546 REMARK 3 L TENSOR REMARK 3 L11: 8.4651 L22: 5.3068 REMARK 3 L33: 7.6135 L12: -1.9989 REMARK 3 L13: 3.9472 L23: 4.3279 REMARK 3 S TENSOR REMARK 3 S11: 0.1693 S12: 1.0193 S13: 0.5400 REMARK 3 S21: -0.3216 S22: -0.1521 S23: -0.1667 REMARK 3 S31: -0.4997 S32: 0.6686 S33: 0.0129 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3789 -23.6886 0.3884 REMARK 3 T TENSOR REMARK 3 T11: 0.1999 T22: 0.2246 REMARK 3 T33: 0.4487 T12: 0.0162 REMARK 3 T13: -0.0152 T23: 0.0679 REMARK 3 L TENSOR REMARK 3 L11: 6.0022 L22: 2.7287 REMARK 3 L33: 5.0999 L12: -1.7347 REMARK 3 L13: 0.1091 L23: -1.5902 REMARK 3 S TENSOR REMARK 3 S11: -0.1173 S12: 0.4132 S13: 0.6457 REMARK 3 S21: -0.0955 S22: -0.1024 S23: -0.5559 REMARK 3 S31: -0.1228 S32: 0.3773 S33: 0.2018 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 61 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7808 -25.9513 -5.6838 REMARK 3 T TENSOR REMARK 3 T11: 0.2909 T22: 0.3206 REMARK 3 T33: 0.3501 T12: 0.0552 REMARK 3 T13: 0.0253 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 7.2083 L22: 4.2221 REMARK 3 L33: 5.2584 L12: -3.6846 REMARK 3 L13: 4.3956 L23: -2.3647 REMARK 3 S TENSOR REMARK 3 S11: 0.3598 S12: 1.0694 S13: -0.0097 REMARK 3 S21: -0.4777 S22: -0.4221 S23: -0.0679 REMARK 3 S31: 0.2988 S32: 0.6134 S33: 0.0666 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3065 -33.5310 10.6063 REMARK 3 T TENSOR REMARK 3 T11: 0.3213 T22: 0.3394 REMARK 3 T33: 0.3135 T12: 0.0236 REMARK 3 T13: -0.0050 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 9.3609 L22: 9.5401 REMARK 3 L33: 9.4735 L12: -4.7495 REMARK 3 L13: 1.6644 L23: -4.2512 REMARK 3 S TENSOR REMARK 3 S11: -0.0868 S12: -0.9899 S13: -0.0880 REMARK 3 S21: 0.4187 S22: 0.0788 S23: -0.1559 REMARK 3 S31: -0.5517 S32: 0.5434 S33: 0.0389 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4490 -36.3722 5.3116 REMARK 3 T TENSOR REMARK 3 T11: 0.2914 T22: 0.3916 REMARK 3 T33: 0.7811 T12: 0.0026 REMARK 3 T13: -0.0092 T23: 0.0747 REMARK 3 L TENSOR REMARK 3 L11: 2.4759 L22: 5.3720 REMARK 3 L33: 6.5843 L12: 3.5360 REMARK 3 L13: -0.6762 L23: 0.4548 REMARK 3 S TENSOR REMARK 3 S11: 0.1307 S12: -0.4677 S13: -1.9937 REMARK 3 S21: 0.2064 S22: -0.0181 S23: 1.0518 REMARK 3 S31: 0.7363 S32: -1.0101 S33: -0.0796 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 17 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4025 -19.5528 8.0430 REMARK 3 T TENSOR REMARK 3 T11: 0.2120 T22: 0.2726 REMARK 3 T33: 0.2957 T12: 0.1121 REMARK 3 T13: -0.0007 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 7.2919 L22: 3.2873 REMARK 3 L33: 4.0837 L12: 1.2448 REMARK 3 L13: 1.6710 L23: 0.7987 REMARK 3 S TENSOR REMARK 3 S11: -0.3527 S12: -0.6122 S13: 0.2956 REMARK 3 S21: 0.3143 S22: 0.1636 S23: -0.5540 REMARK 3 S31: -0.3161 S32: -0.0557 S33: 0.1604 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 39 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1538 -14.1496 14.1638 REMARK 3 T TENSOR REMARK 3 T11: 0.3918 T22: 0.4611 REMARK 3 T33: 0.4633 T12: 0.1435 REMARK 3 T13: -0.0470 T23: -0.0873 REMARK 3 L TENSOR REMARK 3 L11: 1.5162 L22: 4.3758 REMARK 3 L33: 8.0141 L12: -0.7684 REMARK 3 L13: -2.7339 L23: 4.7370 REMARK 3 S TENSOR REMARK 3 S11: -0.4035 S12: -0.8849 S13: 0.6092 REMARK 3 S21: 0.4125 S22: 0.0684 S23: -0.3447 REMARK 3 S31: -0.2289 S32: -0.0580 S33: 0.3689 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 62 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5497 -22.6002 1.2759 REMARK 3 T TENSOR REMARK 3 T11: 0.2098 T22: 0.2110 REMARK 3 T33: 0.3201 T12: 0.0341 REMARK 3 T13: 0.0109 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: 5.6084 L22: 4.9075 REMARK 3 L33: 1.8574 L12: -1.0645 REMARK 3 L13: 0.6155 L23: -0.9671 REMARK 3 S TENSOR REMARK 3 S11: -0.1210 S12: -0.3359 S13: -0.0617 REMARK 3 S21: 0.1241 S22: 0.1282 S23: 0.2255 REMARK 3 S31: 0.0366 S32: -0.0642 S33: 0.0231 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 84 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1798 -22.9677 -3.5823 REMARK 3 T TENSOR REMARK 3 T11: 0.1684 T22: 0.1586 REMARK 3 T33: 0.2908 T12: 0.0737 REMARK 3 T13: 0.0114 T23: 0.0778 REMARK 3 L TENSOR REMARK 3 L11: 6.6340 L22: 3.4975 REMARK 3 L33: 7.5576 L12: -0.5991 REMARK 3 L13: 0.5127 L23: 0.1291 REMARK 3 S TENSOR REMARK 3 S11: 0.1189 S12: 0.1180 S13: -0.1445 REMARK 3 S21: -0.1419 S22: -0.1355 S23: -0.1823 REMARK 3 S31: -0.1652 S32: -0.1766 S33: 0.1331 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.2003 -10.8442 -50.8382 REMARK 3 T TENSOR REMARK 3 T11: 1.1988 T22: 0.9268 REMARK 3 T33: 0.6873 T12: -0.1101 REMARK 3 T13: -0.1504 T23: -0.1094 REMARK 3 L TENSOR REMARK 3 L11: 7.0182 L22: 2.1111 REMARK 3 L33: 0.7513 L12: 1.3953 REMARK 3 L13: -1.5893 L23: 0.5283 REMARK 3 S TENSOR REMARK 3 S11: -0.2373 S12: 1.6071 S13: -1.1667 REMARK 3 S21: -0.3641 S22: -0.0725 S23: 0.1377 REMARK 3 S31: -0.1573 S32: -0.0271 S33: 0.3253 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 17 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.3389 -4.2560 -47.1360 REMARK 3 T TENSOR REMARK 3 T11: 0.9892 T22: 1.0724 REMARK 3 T33: 0.7440 T12: -0.1498 REMARK 3 T13: -0.3304 T23: -0.0956 REMARK 3 L TENSOR REMARK 3 L11: 5.6989 L22: 2.6801 REMARK 3 L33: 2.4231 L12: 0.2844 REMARK 3 L13: -0.8112 L23: 2.4455 REMARK 3 S TENSOR REMARK 3 S11: -0.0604 S12: 0.5582 S13: 0.0989 REMARK 3 S21: -0.8145 S22: -0.4290 S23: 1.5983 REMARK 3 S31: 0.2496 S32: -0.8051 S33: 0.4695 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 45 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.1208 4.0839 -51.8572 REMARK 3 T TENSOR REMARK 3 T11: 1.3956 T22: 1.2598 REMARK 3 T33: 0.7576 T12: 0.1181 REMARK 3 T13: -0.3622 T23: -0.0279 REMARK 3 L TENSOR REMARK 3 L11: 7.7774 L22: 4.2617 REMARK 3 L33: 5.3766 L12: 4.1108 REMARK 3 L13: 3.4209 L23: 0.5442 REMARK 3 S TENSOR REMARK 3 S11: -0.2713 S12: 1.6688 S13: 1.2722 REMARK 3 S21: -1.9554 S22: -0.2245 S23: 0.9677 REMARK 3 S31: -1.0061 S32: -1.6175 S33: 0.5093 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 57 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.4864 -2.7395 -48.3512 REMARK 3 T TENSOR REMARK 3 T11: 1.2502 T22: 0.9444 REMARK 3 T33: 0.3745 T12: -0.0696 REMARK 3 T13: -0.1922 T23: 0.0499 REMARK 3 L TENSOR REMARK 3 L11: 1.8232 L22: 0.0019 REMARK 3 L33: 2.8121 L12: -0.0115 REMARK 3 L13: 2.2570 L23: 0.0092 REMARK 3 S TENSOR REMARK 3 S11: -0.2133 S12: 1.0101 S13: 0.3147 REMARK 3 S21: -1.3625 S22: 0.0279 S23: 0.2251 REMARK 3 S31: -0.2950 S32: -0.4829 S33: 0.1614 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9D1I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1000287144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72013 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.55300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10%PEG5KMME, 0.1M HEPES PH=7.0, 5% REMARK 280 TASCSIMATE PH=7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.57100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.57100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.35450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.72000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.35450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.72000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.57100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.35450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.72000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.57100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 57.35450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.72000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 545 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 854 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 919 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 314 REMARK 465 GLU A 315 REMARK 465 GLY A 316 REMARK 465 LEU A 317 REMARK 465 GLY A 318 REMARK 465 ASP A 319 REMARK 465 GLU A 320 REMARK 465 PHE A 321 REMARK 465 VAL A 378 REMARK 465 SER A 379 REMARK 465 SER A 380 REMARK 465 HIS A 381 REMARK 465 LYS A 382 REMARK 465 GLU B 98 REMARK 465 LEU B 99 REMARK 465 PRO B 100 REMARK 465 ASP B 101 REMARK 465 VAL B 102 REMARK 465 MET B 103 REMARK 465 LYS B 104 REMARK 465 MET C -8 REMARK 465 SER C -7 REMARK 465 TYR C -6 REMARK 465 TYR C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS C 0 REMARK 465 HIS C 1 REMARK 465 ASP C 2 REMARK 465 TYR C 3 REMARK 465 ASP C 4 REMARK 465 ILE C 5 REMARK 465 PRO C 6 REMARK 465 THR C 7 REMARK 465 THR C 8 REMARK 465 GLU C 9 REMARK 465 ASN C 10 REMARK 465 LEU C 11 REMARK 465 TYR C 12 REMARK 465 GLY C 13 REMARK 465 GLN C 14 REMARK 465 GLY C 15 REMARK 465 ALA C 16 REMARK 465 GLN C 51 REMARK 465 PHE C 52 REMARK 465 ALA C 53 REMARK 465 GLU C 54 REMARK 465 ASN C 55 REMARK 465 GLU C 56 REMARK 465 THR C 57 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 41 CG CD1 CD2 REMARK 470 ILE A 66 CG1 CG2 CD1 REMARK 470 ARG A 67 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 69 CG CD OE1 NE2 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 ARG A 119 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 ARG A 215 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 65 CG CD OE1 NE2 REMARK 470 ARG C 63 CG CD NE CZ NH1 NH2 REMARK 470 MET D 1 CG SD CE REMARK 470 GLN D 2 CG CD OE1 NE2 REMARK 470 LYS D 11 CG CD CE NZ REMARK 470 ILE D 13 CG1 CG2 CD1 REMARK 470 LEU D 15 CG CD1 CD2 REMARK 470 GLU D 16 CG CD OE1 OE2 REMARK 470 VAL D 17 CG1 CG2 REMARK 470 GLU D 18 CG CD OE1 OE2 REMARK 470 SER D 20 OG REMARK 470 GLU D 24 CG CD OE1 OE2 REMARK 470 LYS D 33 CG CD CE NZ REMARK 470 ARG D 54 CG CD NE CZ NH1 NH2 REMARK 470 THR D 55 OG1 CG2 REMARK 470 LEU D 56 CG CD1 CD2 REMARK 470 SER D 57 OG REMARK 470 ILE D 61 CG1 CG2 CD1 REMARK 470 GLN D 62 CG CD OE1 NE2 REMARK 470 LYS D 63 CG CD CE NZ REMARK 470 GLU D 64 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN C 61 O HOH C 201 2.16 REMARK 500 O HOH B 227 O HOH B 299 2.18 REMARK 500 O HOH A 831 O HOH A 837 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ACE A 0 C MET A 1 N 0.162 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 N - CA - C ANGL. DEV. = 17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 73 138.01 -172.23 REMARK 500 ASP A 86 -119.57 56.74 REMARK 500 THR A 98 -61.11 -109.76 REMARK 500 SER A 207 19.33 -143.85 REMARK 500 ASN A 214 11.28 -140.98 REMARK 500 SER A 335 70.69 -151.51 REMARK 500 HIS B 10 -114.40 49.85 REMARK 500 ASP B 47 -119.80 51.41 REMARK 500 ALA B 81 -74.89 -94.18 REMARK 500 ASP B 82 -68.72 -121.33 REMARK 500 SER B 94 -178.22 -67.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 924 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 925 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 926 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 927 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 928 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 929 DISTANCE = 6.78 ANGSTROMS DBREF 9D1I A 1 382 UNP Q9BQ90 KLDC3_HUMAN 1 382 DBREF 9D1I B 1 104 UNP Q15370 ELOB_HUMAN 1 104 DBREF 9D1I C 16 112 UNP Q15369 ELOC_HUMAN 16 112 DBREF 9D1I D 1 76 UNP P0CG47 UBB_HUMAN 1 76 SEQADV 9D1I ACE A 0 UNP Q9BQ90 ACETYLATION SEQADV 9D1I LYS A 382 UNP Q9BQ90 GLY 382 CONFLICT SEQADV 9D1I MET C -8 UNP Q15369 INITIATING METHIONINE SEQADV 9D1I SER C -7 UNP Q15369 EXPRESSION TAG SEQADV 9D1I TYR C -6 UNP Q15369 EXPRESSION TAG SEQADV 9D1I TYR C -5 UNP Q15369 EXPRESSION TAG SEQADV 9D1I HIS C -4 UNP Q15369 EXPRESSION TAG SEQADV 9D1I HIS C -3 UNP Q15369 EXPRESSION TAG SEQADV 9D1I HIS C -2 UNP Q15369 EXPRESSION TAG SEQADV 9D1I HIS C -1 UNP Q15369 EXPRESSION TAG SEQADV 9D1I HIS C 0 UNP Q15369 EXPRESSION TAG SEQADV 9D1I HIS C 1 UNP Q15369 EXPRESSION TAG SEQADV 9D1I ASP C 2 UNP Q15369 EXPRESSION TAG SEQADV 9D1I TYR C 3 UNP Q15369 EXPRESSION TAG SEQADV 9D1I ASP C 4 UNP Q15369 EXPRESSION TAG SEQADV 9D1I ILE C 5 UNP Q15369 EXPRESSION TAG SEQADV 9D1I PRO C 6 UNP Q15369 EXPRESSION TAG SEQADV 9D1I THR C 7 UNP Q15369 EXPRESSION TAG SEQADV 9D1I THR C 8 UNP Q15369 EXPRESSION TAG SEQADV 9D1I GLU C 9 UNP Q15369 EXPRESSION TAG SEQADV 9D1I ASN C 10 UNP Q15369 EXPRESSION TAG SEQADV 9D1I LEU C 11 UNP Q15369 EXPRESSION TAG SEQADV 9D1I TYR C 12 UNP Q15369 EXPRESSION TAG SEQADV 9D1I GLY C 13 UNP Q15369 EXPRESSION TAG SEQADV 9D1I GLN C 14 UNP Q15369 EXPRESSION TAG SEQADV 9D1I GLY C 15 UNP Q15369 EXPRESSION TAG SEQRES 1 A 383 ACE MET LEU ARG TRP THR VAL HIS LEU GLU GLY GLY PRO SEQRES 2 A 383 ARG ARG VAL ASN HIS ALA ALA VAL ALA VAL GLY HIS ARG SEQRES 3 A 383 VAL TYR SER PHE GLY GLY TYR CYS SER GLY GLU ASP TYR SEQRES 4 A 383 GLU THR LEU ARG GLN ILE ASP VAL HIS ILE PHE ASN ALA SEQRES 5 A 383 VAL SER LEU ARG TRP THR LYS LEU PRO PRO VAL LYS SER SEQRES 6 A 383 ALA ILE ARG GLY GLN ALA PRO VAL VAL PRO TYR MET ARG SEQRES 7 A 383 TYR GLY HIS SER THR VAL LEU ILE ASP ASP THR VAL LEU SEQRES 8 A 383 LEU TRP GLY GLY ARG ASN ASP THR GLU GLY ALA CYS ASN SEQRES 9 A 383 VAL LEU TYR ALA PHE ASP VAL ASN THR HIS LYS TRP PHE SEQRES 10 A 383 THR PRO ARG VAL SER GLY THR VAL PRO GLY ALA ARG ASP SEQRES 11 A 383 GLY HIS SER ALA CYS VAL LEU GLY LYS ILE MET TYR ILE SEQRES 12 A 383 PHE GLY GLY TYR GLU GLN GLN ALA ASP CYS PHE SER ASN SEQRES 13 A 383 ASP ILE HIS LYS LEU ASP THR SER THR MET THR TRP THR SEQRES 14 A 383 LEU ILE CYS THR LYS GLY SER PRO ALA ARG TRP ARG ASP SEQRES 15 A 383 PHE HIS SER ALA THR MET LEU GLY SER HIS MET TYR VAL SEQRES 16 A 383 PHE GLY GLY ARG ALA ASP ARG PHE GLY PRO PHE HIS SER SEQRES 17 A 383 ASN ASN GLU ILE TYR CYS ASN ARG ILE ARG VAL PHE ASP SEQRES 18 A 383 THR ARG THR GLU ALA TRP LEU ASP CYS PRO PRO THR PRO SEQRES 19 A 383 VAL LEU PRO GLU GLY ARG ARG SER HIS SER ALA PHE GLY SEQRES 20 A 383 TYR ASN GLY GLU LEU TYR ILE PHE GLY GLY TYR ASN ALA SEQRES 21 A 383 ARG LEU ASN ARG HIS PHE HIS ASP LEU TRP LYS PHE ASN SEQRES 22 A 383 PRO VAL SER PHE THR TRP LYS LYS ILE GLU PRO LYS GLY SEQRES 23 A 383 LYS GLY PRO CYS PRO ARG ARG ARG GLN CYS CYS CYS ILE SEQRES 24 A 383 VAL GLY ASP LYS ILE VAL LEU PHE GLY GLY THR SER PRO SEQRES 25 A 383 SER PRO GLU GLU GLY LEU GLY ASP GLU PHE ASP LEU ILE SEQRES 26 A 383 ASP HIS SER ASP LEU HIS ILE LEU ASP PHE SER PRO SER SEQRES 27 A 383 LEU LYS THR LEU CYS LYS LEU ALA VAL ILE GLN TYR ASN SEQRES 28 A 383 LEU ASP GLN SER CYS LEU PRO HIS ASP ILE ARG TRP GLU SEQRES 29 A 383 LEU ASN ALA MET THR THR ASN SER ASN ILE SER ARG PRO SEQRES 30 A 383 ILE VAL SER SER HIS LYS SEQRES 1 B 104 MET ASP VAL PHE LEU MET ILE ARG ARG HIS LYS THR THR SEQRES 2 B 104 ILE PHE THR ASP ALA LYS GLU SER SER THR VAL PHE GLU SEQRES 3 B 104 LEU LYS ARG ILE VAL GLU GLY ILE LEU LYS ARG PRO PRO SEQRES 4 B 104 ASP GLU GLN ARG LEU TYR LYS ASP ASP GLN LEU LEU ASP SEQRES 5 B 104 ASP GLY LYS THR LEU GLY GLU CYS GLY PHE THR SER GLN SEQRES 6 B 104 THR ALA ARG PRO GLN ALA PRO ALA THR VAL GLY LEU ALA SEQRES 7 B 104 PHE ARG ALA ASP ASP THR PHE GLU ALA LEU CYS ILE GLU SEQRES 8 B 104 PRO PHE SER SER PRO PRO GLU LEU PRO ASP VAL MET LYS SEQRES 1 C 121 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 C 121 ILE PRO THR THR GLU ASN LEU TYR GLY GLN GLY ALA MET SEQRES 3 C 121 TYR VAL LYS LEU ILE SER SER ASP GLY HIS GLU PHE ILE SEQRES 4 C 121 VAL LYS ARG GLU HIS ALA LEU THR SER GLY THR ILE LYS SEQRES 5 C 121 ALA MET LEU SER GLY PRO GLY GLN PHE ALA GLU ASN GLU SEQRES 6 C 121 THR ASN GLU VAL ASN PHE ARG GLU ILE PRO SER HIS VAL SEQRES 7 C 121 LEU SER LYS VAL CYS MET TYR PHE THR TYR LYS VAL ARG SEQRES 8 C 121 TYR THR ASN SER SER THR GLU ILE PRO GLU PHE PRO ILE SEQRES 9 C 121 ALA PRO GLU ILE ALA LEU GLU LEU LEU MET ALA ALA ASN SEQRES 10 C 121 PHE LEU ASP CYS SEQRES 1 D 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 D 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 D 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 D 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 D 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 D 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET ACE A 0 3 HET GOL A 401 6 HETNAM ACE ACETYL GROUP HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 ACE C2 H4 O FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *613(H2 O) HELIX 1 AA1 SER A 337 TYR A 349 1 13 HELIX 2 AA2 PRO A 357 THR A 368 1 12 HELIX 3 AA3 THR B 23 LYS B 36 1 14 HELIX 4 AA4 PRO B 38 ASP B 40 5 3 HELIX 5 AA5 THR B 63 ALA B 67 5 5 HELIX 6 AA6 ARG C 33 LEU C 37 1 5 HELIX 7 AA7 SER C 39 SER C 47 1 9 HELIX 8 AA8 PRO C 66 THR C 84 1 19 HELIX 9 AA9 ALA C 96 ASP C 111 1 16 HELIX 10 AB1 THR D 22 GLY D 35 1 14 HELIX 11 AB2 PRO D 37 ASP D 39 5 3 HELIX 12 AB3 LEU D 56 ASN D 60 5 5 SHEET 1 AA1 4 ARG A 3 LEU A 8 0 SHEET 2 AA1 4 LEU A 329 ASP A 333 -1 O ASP A 333 N ARG A 3 SHEET 3 AA1 4 LYS A 302 PHE A 306 -1 N LEU A 305 O HIS A 330 SHEET 4 AA1 4 CYS A 295 VAL A 299 -1 N VAL A 299 O LYS A 302 SHEET 1 AA2 4 ALA A 18 VAL A 22 0 SHEET 2 AA2 4 ARG A 25 PHE A 29 -1 O ARG A 25 N VAL A 22 SHEET 3 AA2 4 VAL A 46 ASN A 50 -1 O HIS A 47 N SER A 28 SHEET 4 AA2 4 ARG A 55 LYS A 58 -1 O ARG A 55 N ASN A 50 SHEET 1 AA3 4 TYR A 78 ILE A 85 0 SHEET 2 AA3 4 THR A 88 ARG A 95 -1 O THR A 88 N ILE A 85 SHEET 3 AA3 4 TYR A 106 ASP A 109 -1 O PHE A 108 N VAL A 89 SHEET 4 AA3 4 TRP A 115 PHE A 116 -1 O PHE A 116 N ALA A 107 SHEET 1 AA4 5 SER A 121 GLY A 122 0 SHEET 2 AA4 5 THR A 166 LEU A 169 1 O TRP A 167 N SER A 121 SHEET 3 AA4 5 ILE A 157 ASP A 161 -1 N LYS A 159 O THR A 168 SHEET 4 AA4 5 ILE A 139 PHE A 143 -1 N ILE A 142 O HIS A 158 SHEET 5 AA4 5 SER A 132 LEU A 136 -1 N CYS A 134 O TYR A 141 SHEET 1 AA5 3 ARG A 128 ASP A 129 0 SHEET 2 AA5 3 TYR A 146 GLU A 147 -1 O TYR A 146 N ASP A 129 SHEET 3 AA5 3 CYS A 152 PHE A 153 -1 O CYS A 152 N GLU A 147 SHEET 1 AA6 4 SER A 184 LEU A 188 0 SHEET 2 AA6 4 HIS A 191 PHE A 195 -1 O TYR A 193 N THR A 186 SHEET 3 AA6 4 ARG A 217 ASP A 220 -1 O PHE A 219 N MET A 192 SHEET 4 AA6 4 ALA A 225 TRP A 226 -1 O ALA A 225 N ASP A 220 SHEET 1 AA7 2 ARG A 198 ASP A 200 0 SHEET 2 AA7 2 GLU A 210 TYR A 212 -1 O ILE A 211 N ALA A 199 SHEET 1 AA8 4 SER A 243 TYR A 247 0 SHEET 2 AA8 4 GLU A 250 ASN A 258 -1 O GLU A 250 N TYR A 247 SHEET 3 AA8 4 ARG A 263 ASN A 272 -1 O PHE A 271 N LEU A 251 SHEET 4 AA8 4 THR A 277 ILE A 281 -1 O LYS A 279 N LYS A 270 SHEET 1 AA9 2 THR A 309 PRO A 311 0 SHEET 2 AA9 2 LEU A 323 ASP A 325 -1 O ILE A 324 N SER A 310 SHEET 1 AB1 8 GLN B 49 LEU B 50 0 SHEET 2 AB1 8 GLN B 42 LYS B 46 -1 N LYS B 46 O GLN B 49 SHEET 3 AB1 8 ALA B 73 PHE B 79 -1 O GLY B 76 N TYR B 45 SHEET 4 AB1 8 ASP B 2 ARG B 9 1 N MET B 6 O VAL B 75 SHEET 5 AB1 8 THR B 12 LYS B 19 -1 O THR B 16 N LEU B 5 SHEET 6 AB1 8 GLU C 28 LYS C 32 1 O ILE C 30 N PHE B 15 SHEET 7 AB1 8 TYR C 18 ILE C 22 -1 N LEU C 21 O PHE C 29 SHEET 8 AB1 8 GLU C 59 ASN C 61 1 O VAL C 60 N ILE C 22 SHEET 1 AB2 5 THR D 12 GLU D 16 0 SHEET 2 AB2 5 GLN D 2 THR D 7 -1 N ILE D 3 O LEU D 15 SHEET 3 AB2 5 THR D 66 LEU D 71 1 O LEU D 67 N PHE D 4 SHEET 4 AB2 5 GLN D 41 PHE D 45 -1 N ARG D 42 O VAL D 70 SHEET 5 AB2 5 LYS D 48 GLN D 49 -1 O LYS D 48 N PHE D 45 LINK C ACE A 0 N MET A 1 1555 1555 1.50 CRYST1 114.709 121.440 153.142 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008718 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008235 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006530 0.00000 HETATM 1 C ACE A 0 2.013 -14.825 -9.234 1.00 45.44 C HETATM 2 O ACE A 0 2.543 -15.273 -8.254 1.00 28.09 O HETATM 3 CH3 ACE A 0 2.063 -13.310 -9.297 1.00 50.97 C