data_9D24 # _entry.id 9D24 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.408 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9D24 pdb_00009d24 10.2210/pdb9d24/pdb WWPDB D_1000287185 ? ? EMDB EMD-46482 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-08-13 ? 2 'EM metadata' 1 0 2025-08-13 ? 3 'Additional map' 1 0 2025-08-13 1 4 FSC 1 0 2025-08-13 ? 5 'Half map' 1 0 2025-08-13 1 6 'Half map' 1 0 2025-08-13 2 7 Image 1 0 2025-08-13 ? 8 Mask 1 0 2025-08-13 1 9 'Primary map' 1 0 2025-08-13 ? 10 'Structure model' 1 1 2025-10-22 ? 11 'Structure model' 1 2 2025-10-29 ? 12 'Structure model' 1 3 2025-12-17 ? 13 'EM metadata' 1 1 2025-12-17 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Additional map' repository 'Initial release' ? ? 4 4 FSC repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 'Half map' repository 'Initial release' ? ? 7 7 Image repository 'Initial release' ? ? 8 8 Mask repository 'Initial release' ? ? 9 9 'Primary map' repository 'Initial release' ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 10 'Structure model' 'Data collection' 2 10 'Structure model' 'Database references' 3 11 'Structure model' 'Data collection' 4 11 'Structure model' 'Database references' 5 12 'Structure model' 'Data collection' 6 12 'Structure model' 'Database references' 7 13 'EM metadata' 'Database references' 8 13 'EM metadata' 'Experimental summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 10 'Structure model' citation 2 10 'Structure model' citation_author 3 10 'Structure model' em_admin 4 11 'Structure model' citation 5 11 'Structure model' em_admin 6 12 'Structure model' citation 7 12 'Structure model' em_admin 8 13 'EM metadata' citation 9 13 'EM metadata' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 10 'Structure model' '_citation.country' 2 10 'Structure model' '_citation.journal_abbrev' 3 10 'Structure model' '_citation.journal_id_ASTM' 4 10 'Structure model' '_citation.journal_id_CSD' 5 10 'Structure model' '_citation.journal_id_ISSN' 6 10 'Structure model' '_citation.pdbx_database_id_DOI' 7 10 'Structure model' '_citation.title' 8 10 'Structure model' '_citation.year' 9 10 'Structure model' '_em_admin.last_update' 10 11 'Structure model' '_citation.pdbx_database_id_PubMed' 11 11 'Structure model' '_citation.title' 12 11 'Structure model' '_em_admin.last_update' 13 12 'Structure model' '_citation.journal_volume' 14 12 'Structure model' '_citation.page_first' 15 12 'Structure model' '_citation.page_last' 16 12 'Structure model' '_em_admin.last_update' 17 13 'EM metadata' '_citation.journal_volume' 18 13 'EM metadata' '_citation.page_first' 19 13 'EM metadata' '_citation.page_last' 20 13 'EM metadata' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9D24 _pdbx_database_status.recvd_initial_deposition_date 2024-08-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB . EMD-46479 'other EM volume' PDB . 9D21 unspecified EMDB . EMD-46481 'focused EM volume' PDB . 9D23 unspecified EMDB 'Cryo-EM structure of amyloid fibril extracted from thyroid of a variant ATTR T60A amyloidosis patient 3' EMD-46482 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email lorena.saelicesgomez@utsouthwestern.edu _pdbx_contact_author.name_first Lorena _pdbx_contact_author.name_last Saelices _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-1904-2150 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Nguyen, A.B.' 1 0000-0001-7055-8809 'Fernandez-Ramirez, M.C.' 2 0000-0002-3265-5242 'Saelices, L.' 3 0000-0002-1904-2150 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 0969-2126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 33 _citation.language ? _citation.page_first 2013 _citation.page_last 2019.e4 _citation.title 'Structural and molecular homogeneity of ATTRv-T60A amyloid fibrils across patients and organs.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2025.09.008 _citation.pdbx_database_id_PubMed 41106377 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fernandez-Ramirez, M.D.C.' 1 ? primary 'Nguyen, B.A.' 2 ? primary 'Afrin, S.' 3 ? primary 'Singh, V.' 4 ? primary 'Evers, B.' 5 ? primary 'Shelton, J.M.' 6 ? primary 'Escobar, C.L.' 7 ? primary 'Bassett, P.' 8 ? primary 'Wang, L.' 9 ? primary 'Pekala, M.' 10 ? primary 'Ahmed, Y.' 11 ? primary 'Cabrera Hernandez, L.O.' 12 ? primary 'Pedretti, R.' 13 ? primary 'Singh, P.' 14 ? primary 'Canepa, J.' 15 ? primary 'Wosztyl, A.' 16 ? primary 'Li, Y.' 17 ? primary 'Boyer, D.R.' 18 ? primary 'Cao, Q.' 19 ? primary 'Saelices, L.' 20 ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description Transthyretin _entity.formula_weight 13747.334 _entity.pdbx_number_of_molecules 5 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ATTR,Prealbumin,TBPA # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTAEEEFVEGIYKVEIDTKSYWK ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _entity_poly.pdbx_seq_one_letter_code_can ;GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTAEEEFVEGIYKVEIDTKSYWK ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _entity_poly.pdbx_strand_id A,B,C,D,E _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 THR n 1 4 GLY n 1 5 THR n 1 6 GLY n 1 7 GLU n 1 8 SER n 1 9 LYS n 1 10 CYS n 1 11 PRO n 1 12 LEU n 1 13 MET n 1 14 VAL n 1 15 LYS n 1 16 VAL n 1 17 LEU n 1 18 ASP n 1 19 ALA n 1 20 VAL n 1 21 ARG n 1 22 GLY n 1 23 SER n 1 24 PRO n 1 25 ALA n 1 26 ILE n 1 27 ASN n 1 28 VAL n 1 29 ALA n 1 30 VAL n 1 31 HIS n 1 32 VAL n 1 33 PHE n 1 34 ARG n 1 35 LYS n 1 36 ALA n 1 37 ALA n 1 38 ASP n 1 39 ASP n 1 40 THR n 1 41 TRP n 1 42 GLU n 1 43 PRO n 1 44 PHE n 1 45 ALA n 1 46 SER n 1 47 GLY n 1 48 LYS n 1 49 THR n 1 50 SER n 1 51 GLU n 1 52 SER n 1 53 GLY n 1 54 GLU n 1 55 LEU n 1 56 HIS n 1 57 GLY n 1 58 LEU n 1 59 THR n 1 60 ALA n 1 61 GLU n 1 62 GLU n 1 63 GLU n 1 64 PHE n 1 65 VAL n 1 66 GLU n 1 67 GLY n 1 68 ILE n 1 69 TYR n 1 70 LYS n 1 71 VAL n 1 72 GLU n 1 73 ILE n 1 74 ASP n 1 75 THR n 1 76 LYS n 1 77 SER n 1 78 TYR n 1 79 TRP n 1 80 LYS n 1 81 ALA n 1 82 LEU n 1 83 GLY n 1 84 ILE n 1 85 SER n 1 86 PRO n 1 87 PHE n 1 88 HIS n 1 89 GLU n 1 90 HIS n 1 91 ALA n 1 92 GLU n 1 93 VAL n 1 94 VAL n 1 95 PHE n 1 96 THR n 1 97 ALA n 1 98 ASN n 1 99 ASP n 1 100 SER n 1 101 GLY n 1 102 PRO n 1 103 ARG n 1 104 ARG n 1 105 TYR n 1 106 THR n 1 107 ILE n 1 108 ALA n 1 109 ALA n 1 110 LEU n 1 111 LEU n 1 112 SER n 1 113 PRO n 1 114 TYR n 1 115 SER n 1 116 TYR n 1 117 SER n 1 118 THR n 1 119 THR n 1 120 ALA n 1 121 VAL n 1 122 VAL n 1 123 THR n 1 124 ASN n 1 125 PRO n 1 126 LYS n 1 127 GLU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 127 _entity_src_nat.common_name human _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue Thyroid _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ Thyroid _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 PRO 2 2 ? ? ? A . n A 1 3 THR 3 3 ? ? ? A . n A 1 4 GLY 4 4 ? ? ? A . n A 1 5 THR 5 5 ? ? ? A . n A 1 6 GLY 6 6 ? ? ? A . n A 1 7 GLU 7 7 ? ? ? A . n A 1 8 SER 8 8 ? ? ? A . n A 1 9 LYS 9 9 ? ? ? A . n A 1 10 CYS 10 10 ? ? ? A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 MET 13 13 13 MET MET A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 HIS 31 31 31 HIS HIS A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ALA 37 37 ? ? ? A . n A 1 38 ASP 38 38 ? ? ? A . n A 1 39 ASP 39 39 ? ? ? A . n A 1 40 THR 40 40 ? ? ? A . n A 1 41 TRP 41 41 ? ? ? A . n A 1 42 GLU 42 42 ? ? ? A . n A 1 43 PRO 43 43 ? ? ? A . n A 1 44 PHE 44 44 ? ? ? A . n A 1 45 ALA 45 45 ? ? ? A . n A 1 46 SER 46 46 ? ? ? A . n A 1 47 GLY 47 47 ? ? ? A . n A 1 48 LYS 48 48 ? ? ? A . n A 1 49 THR 49 49 ? ? ? A . n A 1 50 SER 50 50 ? ? ? A . n A 1 51 GLU 51 51 ? ? ? A . n A 1 52 SER 52 52 ? ? ? A . n A 1 53 GLY 53 53 ? ? ? A . n A 1 54 GLU 54 54 ? ? ? A . n A 1 55 LEU 55 55 ? ? ? A . n A 1 56 HIS 56 56 ? ? ? A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 TRP 79 79 79 TRP TRP A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 PHE 87 87 87 PHE PHE A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 HIS 90 90 90 HIS HIS A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 ARG 104 104 104 ARG ARG A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 TYR 116 116 116 TYR TYR A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 THR 119 119 119 THR THR A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 THR 123 123 123 THR THR A . n A 1 124 ASN 124 124 124 ASN ASN A . n A 1 125 PRO 125 125 ? ? ? A . n A 1 126 LYS 126 126 ? ? ? A . n A 1 127 GLU 127 127 ? ? ? A . n B 1 1 GLY 1 1 ? ? ? B . n B 1 2 PRO 2 2 ? ? ? B . n B 1 3 THR 3 3 ? ? ? B . n B 1 4 GLY 4 4 ? ? ? B . n B 1 5 THR 5 5 ? ? ? B . n B 1 6 GLY 6 6 ? ? ? B . n B 1 7 GLU 7 7 ? ? ? B . n B 1 8 SER 8 8 ? ? ? B . n B 1 9 LYS 9 9 ? ? ? B . n B 1 10 CYS 10 10 ? ? ? B . n B 1 11 PRO 11 11 11 PRO PRO B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 MET 13 13 13 MET MET B . n B 1 14 VAL 14 14 14 VAL VAL B . n B 1 15 LYS 15 15 15 LYS LYS B . n B 1 16 VAL 16 16 16 VAL VAL B . n B 1 17 LEU 17 17 17 LEU LEU B . n B 1 18 ASP 18 18 18 ASP ASP B . n B 1 19 ALA 19 19 19 ALA ALA B . n B 1 20 VAL 20 20 20 VAL VAL B . n B 1 21 ARG 21 21 21 ARG ARG B . n B 1 22 GLY 22 22 22 GLY GLY B . n B 1 23 SER 23 23 23 SER SER B . n B 1 24 PRO 24 24 24 PRO PRO B . n B 1 25 ALA 25 25 25 ALA ALA B . n B 1 26 ILE 26 26 26 ILE ILE B . n B 1 27 ASN 27 27 27 ASN ASN B . n B 1 28 VAL 28 28 28 VAL VAL B . n B 1 29 ALA 29 29 29 ALA ALA B . n B 1 30 VAL 30 30 30 VAL VAL B . n B 1 31 HIS 31 31 31 HIS HIS B . n B 1 32 VAL 32 32 32 VAL VAL B . n B 1 33 PHE 33 33 33 PHE PHE B . n B 1 34 ARG 34 34 34 ARG ARG B . n B 1 35 LYS 35 35 35 LYS LYS B . n B 1 36 ALA 36 36 36 ALA ALA B . n B 1 37 ALA 37 37 ? ? ? B . n B 1 38 ASP 38 38 ? ? ? B . n B 1 39 ASP 39 39 ? ? ? B . n B 1 40 THR 40 40 ? ? ? B . n B 1 41 TRP 41 41 ? ? ? B . n B 1 42 GLU 42 42 ? ? ? B . n B 1 43 PRO 43 43 ? ? ? B . n B 1 44 PHE 44 44 ? ? ? B . n B 1 45 ALA 45 45 ? ? ? B . n B 1 46 SER 46 46 ? ? ? B . n B 1 47 GLY 47 47 ? ? ? B . n B 1 48 LYS 48 48 ? ? ? B . n B 1 49 THR 49 49 ? ? ? B . n B 1 50 SER 50 50 ? ? ? B . n B 1 51 GLU 51 51 ? ? ? B . n B 1 52 SER 52 52 ? ? ? B . n B 1 53 GLY 53 53 ? ? ? B . n B 1 54 GLU 54 54 ? ? ? B . n B 1 55 LEU 55 55 ? ? ? B . n B 1 56 HIS 56 56 ? ? ? B . n B 1 57 GLY 57 57 57 GLY GLY B . n B 1 58 LEU 58 58 58 LEU LEU B . n B 1 59 THR 59 59 59 THR THR B . n B 1 60 ALA 60 60 60 ALA ALA B . n B 1 61 GLU 61 61 61 GLU GLU B . n B 1 62 GLU 62 62 62 GLU GLU B . n B 1 63 GLU 63 63 63 GLU GLU B . n B 1 64 PHE 64 64 64 PHE PHE B . n B 1 65 VAL 65 65 65 VAL VAL B . n B 1 66 GLU 66 66 66 GLU GLU B . n B 1 67 GLY 67 67 67 GLY GLY B . n B 1 68 ILE 68 68 68 ILE ILE B . n B 1 69 TYR 69 69 69 TYR TYR B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 VAL 71 71 71 VAL VAL B . n B 1 72 GLU 72 72 72 GLU GLU B . n B 1 73 ILE 73 73 73 ILE ILE B . n B 1 74 ASP 74 74 74 ASP ASP B . n B 1 75 THR 75 75 75 THR THR B . n B 1 76 LYS 76 76 76 LYS LYS B . n B 1 77 SER 77 77 77 SER SER B . n B 1 78 TYR 78 78 78 TYR TYR B . n B 1 79 TRP 79 79 79 TRP TRP B . n B 1 80 LYS 80 80 80 LYS LYS B . n B 1 81 ALA 81 81 81 ALA ALA B . n B 1 82 LEU 82 82 82 LEU LEU B . n B 1 83 GLY 83 83 83 GLY GLY B . n B 1 84 ILE 84 84 84 ILE ILE B . n B 1 85 SER 85 85 85 SER SER B . n B 1 86 PRO 86 86 86 PRO PRO B . n B 1 87 PHE 87 87 87 PHE PHE B . n B 1 88 HIS 88 88 88 HIS HIS B . n B 1 89 GLU 89 89 89 GLU GLU B . n B 1 90 HIS 90 90 90 HIS HIS B . n B 1 91 ALA 91 91 91 ALA ALA B . n B 1 92 GLU 92 92 92 GLU GLU B . n B 1 93 VAL 93 93 93 VAL VAL B . n B 1 94 VAL 94 94 94 VAL VAL B . n B 1 95 PHE 95 95 95 PHE PHE B . n B 1 96 THR 96 96 96 THR THR B . n B 1 97 ALA 97 97 97 ALA ALA B . n B 1 98 ASN 98 98 98 ASN ASN B . n B 1 99 ASP 99 99 99 ASP ASP B . n B 1 100 SER 100 100 100 SER SER B . n B 1 101 GLY 101 101 101 GLY GLY B . n B 1 102 PRO 102 102 102 PRO PRO B . n B 1 103 ARG 103 103 103 ARG ARG B . n B 1 104 ARG 104 104 104 ARG ARG B . n B 1 105 TYR 105 105 105 TYR TYR B . n B 1 106 THR 106 106 106 THR THR B . n B 1 107 ILE 107 107 107 ILE ILE B . n B 1 108 ALA 108 108 108 ALA ALA B . n B 1 109 ALA 109 109 109 ALA ALA B . n B 1 110 LEU 110 110 110 LEU LEU B . n B 1 111 LEU 111 111 111 LEU LEU B . n B 1 112 SER 112 112 112 SER SER B . n B 1 113 PRO 113 113 113 PRO PRO B . n B 1 114 TYR 114 114 114 TYR TYR B . n B 1 115 SER 115 115 115 SER SER B . n B 1 116 TYR 116 116 116 TYR TYR B . n B 1 117 SER 117 117 117 SER SER B . n B 1 118 THR 118 118 118 THR THR B . n B 1 119 THR 119 119 119 THR THR B . n B 1 120 ALA 120 120 120 ALA ALA B . n B 1 121 VAL 121 121 121 VAL VAL B . n B 1 122 VAL 122 122 122 VAL VAL B . n B 1 123 THR 123 123 123 THR THR B . n B 1 124 ASN 124 124 124 ASN ASN B . n B 1 125 PRO 125 125 ? ? ? B . n B 1 126 LYS 126 126 ? ? ? B . n B 1 127 GLU 127 127 ? ? ? B . n C 1 1 GLY 1 1 ? ? ? C . n C 1 2 PRO 2 2 ? ? ? C . n C 1 3 THR 3 3 ? ? ? C . n C 1 4 GLY 4 4 ? ? ? C . n C 1 5 THR 5 5 ? ? ? C . n C 1 6 GLY 6 6 ? ? ? C . n C 1 7 GLU 7 7 ? ? ? C . n C 1 8 SER 8 8 ? ? ? C . n C 1 9 LYS 9 9 ? ? ? C . n C 1 10 CYS 10 10 ? ? ? C . n C 1 11 PRO 11 11 11 PRO PRO C . n C 1 12 LEU 12 12 12 LEU LEU C . n C 1 13 MET 13 13 13 MET MET C . n C 1 14 VAL 14 14 14 VAL VAL C . n C 1 15 LYS 15 15 15 LYS LYS C . n C 1 16 VAL 16 16 16 VAL VAL C . n C 1 17 LEU 17 17 17 LEU LEU C . n C 1 18 ASP 18 18 18 ASP ASP C . n C 1 19 ALA 19 19 19 ALA ALA C . n C 1 20 VAL 20 20 20 VAL VAL C . n C 1 21 ARG 21 21 21 ARG ARG C . n C 1 22 GLY 22 22 22 GLY GLY C . n C 1 23 SER 23 23 23 SER SER C . n C 1 24 PRO 24 24 24 PRO PRO C . n C 1 25 ALA 25 25 25 ALA ALA C . n C 1 26 ILE 26 26 26 ILE ILE C . n C 1 27 ASN 27 27 27 ASN ASN C . n C 1 28 VAL 28 28 28 VAL VAL C . n C 1 29 ALA 29 29 29 ALA ALA C . n C 1 30 VAL 30 30 30 VAL VAL C . n C 1 31 HIS 31 31 31 HIS HIS C . n C 1 32 VAL 32 32 32 VAL VAL C . n C 1 33 PHE 33 33 33 PHE PHE C . n C 1 34 ARG 34 34 34 ARG ARG C . n C 1 35 LYS 35 35 35 LYS LYS C . n C 1 36 ALA 36 36 36 ALA ALA C . n C 1 37 ALA 37 37 ? ? ? C . n C 1 38 ASP 38 38 ? ? ? C . n C 1 39 ASP 39 39 ? ? ? C . n C 1 40 THR 40 40 ? ? ? C . n C 1 41 TRP 41 41 ? ? ? C . n C 1 42 GLU 42 42 ? ? ? C . n C 1 43 PRO 43 43 ? ? ? C . n C 1 44 PHE 44 44 ? ? ? C . n C 1 45 ALA 45 45 ? ? ? C . n C 1 46 SER 46 46 ? ? ? C . n C 1 47 GLY 47 47 ? ? ? C . n C 1 48 LYS 48 48 ? ? ? C . n C 1 49 THR 49 49 ? ? ? C . n C 1 50 SER 50 50 ? ? ? C . n C 1 51 GLU 51 51 ? ? ? C . n C 1 52 SER 52 52 ? ? ? C . n C 1 53 GLY 53 53 ? ? ? C . n C 1 54 GLU 54 54 ? ? ? C . n C 1 55 LEU 55 55 ? ? ? C . n C 1 56 HIS 56 56 ? ? ? C . n C 1 57 GLY 57 57 57 GLY GLY C . n C 1 58 LEU 58 58 58 LEU LEU C . n C 1 59 THR 59 59 59 THR THR C . n C 1 60 ALA 60 60 60 ALA ALA C . n C 1 61 GLU 61 61 61 GLU GLU C . n C 1 62 GLU 62 62 62 GLU GLU C . n C 1 63 GLU 63 63 63 GLU GLU C . n C 1 64 PHE 64 64 64 PHE PHE C . n C 1 65 VAL 65 65 65 VAL VAL C . n C 1 66 GLU 66 66 66 GLU GLU C . n C 1 67 GLY 67 67 67 GLY GLY C . n C 1 68 ILE 68 68 68 ILE ILE C . n C 1 69 TYR 69 69 69 TYR TYR C . n C 1 70 LYS 70 70 70 LYS LYS C . n C 1 71 VAL 71 71 71 VAL VAL C . n C 1 72 GLU 72 72 72 GLU GLU C . n C 1 73 ILE 73 73 73 ILE ILE C . n C 1 74 ASP 74 74 74 ASP ASP C . n C 1 75 THR 75 75 75 THR THR C . n C 1 76 LYS 76 76 76 LYS LYS C . n C 1 77 SER 77 77 77 SER SER C . n C 1 78 TYR 78 78 78 TYR TYR C . n C 1 79 TRP 79 79 79 TRP TRP C . n C 1 80 LYS 80 80 80 LYS LYS C . n C 1 81 ALA 81 81 81 ALA ALA C . n C 1 82 LEU 82 82 82 LEU LEU C . n C 1 83 GLY 83 83 83 GLY GLY C . n C 1 84 ILE 84 84 84 ILE ILE C . n C 1 85 SER 85 85 85 SER SER C . n C 1 86 PRO 86 86 86 PRO PRO C . n C 1 87 PHE 87 87 87 PHE PHE C . n C 1 88 HIS 88 88 88 HIS HIS C . n C 1 89 GLU 89 89 89 GLU GLU C . n C 1 90 HIS 90 90 90 HIS HIS C . n C 1 91 ALA 91 91 91 ALA ALA C . n C 1 92 GLU 92 92 92 GLU GLU C . n C 1 93 VAL 93 93 93 VAL VAL C . n C 1 94 VAL 94 94 94 VAL VAL C . n C 1 95 PHE 95 95 95 PHE PHE C . n C 1 96 THR 96 96 96 THR THR C . n C 1 97 ALA 97 97 97 ALA ALA C . n C 1 98 ASN 98 98 98 ASN ASN C . n C 1 99 ASP 99 99 99 ASP ASP C . n C 1 100 SER 100 100 100 SER SER C . n C 1 101 GLY 101 101 101 GLY GLY C . n C 1 102 PRO 102 102 102 PRO PRO C . n C 1 103 ARG 103 103 103 ARG ARG C . n C 1 104 ARG 104 104 104 ARG ARG C . n C 1 105 TYR 105 105 105 TYR TYR C . n C 1 106 THR 106 106 106 THR THR C . n C 1 107 ILE 107 107 107 ILE ILE C . n C 1 108 ALA 108 108 108 ALA ALA C . n C 1 109 ALA 109 109 109 ALA ALA C . n C 1 110 LEU 110 110 110 LEU LEU C . n C 1 111 LEU 111 111 111 LEU LEU C . n C 1 112 SER 112 112 112 SER SER C . n C 1 113 PRO 113 113 113 PRO PRO C . n C 1 114 TYR 114 114 114 TYR TYR C . n C 1 115 SER 115 115 115 SER SER C . n C 1 116 TYR 116 116 116 TYR TYR C . n C 1 117 SER 117 117 117 SER SER C . n C 1 118 THR 118 118 118 THR THR C . n C 1 119 THR 119 119 119 THR THR C . n C 1 120 ALA 120 120 120 ALA ALA C . n C 1 121 VAL 121 121 121 VAL VAL C . n C 1 122 VAL 122 122 122 VAL VAL C . n C 1 123 THR 123 123 123 THR THR C . n C 1 124 ASN 124 124 124 ASN ASN C . n C 1 125 PRO 125 125 ? ? ? C . n C 1 126 LYS 126 126 ? ? ? C . n C 1 127 GLU 127 127 ? ? ? C . n D 1 1 GLY 1 1 ? ? ? D . n D 1 2 PRO 2 2 ? ? ? D . n D 1 3 THR 3 3 ? ? ? D . n D 1 4 GLY 4 4 ? ? ? D . n D 1 5 THR 5 5 ? ? ? D . n D 1 6 GLY 6 6 ? ? ? D . n D 1 7 GLU 7 7 ? ? ? D . n D 1 8 SER 8 8 ? ? ? D . n D 1 9 LYS 9 9 ? ? ? D . n D 1 10 CYS 10 10 ? ? ? D . n D 1 11 PRO 11 11 11 PRO PRO D . n D 1 12 LEU 12 12 12 LEU LEU D . n D 1 13 MET 13 13 13 MET MET D . n D 1 14 VAL 14 14 14 VAL VAL D . n D 1 15 LYS 15 15 15 LYS LYS D . n D 1 16 VAL 16 16 16 VAL VAL D . n D 1 17 LEU 17 17 17 LEU LEU D . n D 1 18 ASP 18 18 18 ASP ASP D . n D 1 19 ALA 19 19 19 ALA ALA D . n D 1 20 VAL 20 20 20 VAL VAL D . n D 1 21 ARG 21 21 21 ARG ARG D . n D 1 22 GLY 22 22 22 GLY GLY D . n D 1 23 SER 23 23 23 SER SER D . n D 1 24 PRO 24 24 24 PRO PRO D . n D 1 25 ALA 25 25 25 ALA ALA D . n D 1 26 ILE 26 26 26 ILE ILE D . n D 1 27 ASN 27 27 27 ASN ASN D . n D 1 28 VAL 28 28 28 VAL VAL D . n D 1 29 ALA 29 29 29 ALA ALA D . n D 1 30 VAL 30 30 30 VAL VAL D . n D 1 31 HIS 31 31 31 HIS HIS D . n D 1 32 VAL 32 32 32 VAL VAL D . n D 1 33 PHE 33 33 33 PHE PHE D . n D 1 34 ARG 34 34 34 ARG ARG D . n D 1 35 LYS 35 35 35 LYS LYS D . n D 1 36 ALA 36 36 36 ALA ALA D . n D 1 37 ALA 37 37 ? ? ? D . n D 1 38 ASP 38 38 ? ? ? D . n D 1 39 ASP 39 39 ? ? ? D . n D 1 40 THR 40 40 ? ? ? D . n D 1 41 TRP 41 41 ? ? ? D . n D 1 42 GLU 42 42 ? ? ? D . n D 1 43 PRO 43 43 ? ? ? D . n D 1 44 PHE 44 44 ? ? ? D . n D 1 45 ALA 45 45 ? ? ? D . n D 1 46 SER 46 46 ? ? ? D . n D 1 47 GLY 47 47 ? ? ? D . n D 1 48 LYS 48 48 ? ? ? D . n D 1 49 THR 49 49 ? ? ? D . n D 1 50 SER 50 50 ? ? ? D . n D 1 51 GLU 51 51 ? ? ? D . n D 1 52 SER 52 52 ? ? ? D . n D 1 53 GLY 53 53 ? ? ? D . n D 1 54 GLU 54 54 ? ? ? D . n D 1 55 LEU 55 55 ? ? ? D . n D 1 56 HIS 56 56 ? ? ? D . n D 1 57 GLY 57 57 57 GLY GLY D . n D 1 58 LEU 58 58 58 LEU LEU D . n D 1 59 THR 59 59 59 THR THR D . n D 1 60 ALA 60 60 60 ALA ALA D . n D 1 61 GLU 61 61 61 GLU GLU D . n D 1 62 GLU 62 62 62 GLU GLU D . n D 1 63 GLU 63 63 63 GLU GLU D . n D 1 64 PHE 64 64 64 PHE PHE D . n D 1 65 VAL 65 65 65 VAL VAL D . n D 1 66 GLU 66 66 66 GLU GLU D . n D 1 67 GLY 67 67 67 GLY GLY D . n D 1 68 ILE 68 68 68 ILE ILE D . n D 1 69 TYR 69 69 69 TYR TYR D . n D 1 70 LYS 70 70 70 LYS LYS D . n D 1 71 VAL 71 71 71 VAL VAL D . n D 1 72 GLU 72 72 72 GLU GLU D . n D 1 73 ILE 73 73 73 ILE ILE D . n D 1 74 ASP 74 74 74 ASP ASP D . n D 1 75 THR 75 75 75 THR THR D . n D 1 76 LYS 76 76 76 LYS LYS D . n D 1 77 SER 77 77 77 SER SER D . n D 1 78 TYR 78 78 78 TYR TYR D . n D 1 79 TRP 79 79 79 TRP TRP D . n D 1 80 LYS 80 80 80 LYS LYS D . n D 1 81 ALA 81 81 81 ALA ALA D . n D 1 82 LEU 82 82 82 LEU LEU D . n D 1 83 GLY 83 83 83 GLY GLY D . n D 1 84 ILE 84 84 84 ILE ILE D . n D 1 85 SER 85 85 85 SER SER D . n D 1 86 PRO 86 86 86 PRO PRO D . n D 1 87 PHE 87 87 87 PHE PHE D . n D 1 88 HIS 88 88 88 HIS HIS D . n D 1 89 GLU 89 89 89 GLU GLU D . n D 1 90 HIS 90 90 90 HIS HIS D . n D 1 91 ALA 91 91 91 ALA ALA D . n D 1 92 GLU 92 92 92 GLU GLU D . n D 1 93 VAL 93 93 93 VAL VAL D . n D 1 94 VAL 94 94 94 VAL VAL D . n D 1 95 PHE 95 95 95 PHE PHE D . n D 1 96 THR 96 96 96 THR THR D . n D 1 97 ALA 97 97 97 ALA ALA D . n D 1 98 ASN 98 98 98 ASN ASN D . n D 1 99 ASP 99 99 99 ASP ASP D . n D 1 100 SER 100 100 100 SER SER D . n D 1 101 GLY 101 101 101 GLY GLY D . n D 1 102 PRO 102 102 102 PRO PRO D . n D 1 103 ARG 103 103 103 ARG ARG D . n D 1 104 ARG 104 104 104 ARG ARG D . n D 1 105 TYR 105 105 105 TYR TYR D . n D 1 106 THR 106 106 106 THR THR D . n D 1 107 ILE 107 107 107 ILE ILE D . n D 1 108 ALA 108 108 108 ALA ALA D . n D 1 109 ALA 109 109 109 ALA ALA D . n D 1 110 LEU 110 110 110 LEU LEU D . n D 1 111 LEU 111 111 111 LEU LEU D . n D 1 112 SER 112 112 112 SER SER D . n D 1 113 PRO 113 113 113 PRO PRO D . n D 1 114 TYR 114 114 114 TYR TYR D . n D 1 115 SER 115 115 115 SER SER D . n D 1 116 TYR 116 116 116 TYR TYR D . n D 1 117 SER 117 117 117 SER SER D . n D 1 118 THR 118 118 118 THR THR D . n D 1 119 THR 119 119 119 THR THR D . n D 1 120 ALA 120 120 120 ALA ALA D . n D 1 121 VAL 121 121 121 VAL VAL D . n D 1 122 VAL 122 122 122 VAL VAL D . n D 1 123 THR 123 123 123 THR THR D . n D 1 124 ASN 124 124 124 ASN ASN D . n D 1 125 PRO 125 125 ? ? ? D . n D 1 126 LYS 126 126 ? ? ? D . n D 1 127 GLU 127 127 ? ? ? D . n E 1 1 GLY 1 1 ? ? ? E . n E 1 2 PRO 2 2 ? ? ? E . n E 1 3 THR 3 3 ? ? ? E . n E 1 4 GLY 4 4 ? ? ? E . n E 1 5 THR 5 5 ? ? ? E . n E 1 6 GLY 6 6 ? ? ? E . n E 1 7 GLU 7 7 ? ? ? E . n E 1 8 SER 8 8 ? ? ? E . n E 1 9 LYS 9 9 ? ? ? E . n E 1 10 CYS 10 10 ? ? ? E . n E 1 11 PRO 11 11 11 PRO PRO E . n E 1 12 LEU 12 12 12 LEU LEU E . n E 1 13 MET 13 13 13 MET MET E . n E 1 14 VAL 14 14 14 VAL VAL E . n E 1 15 LYS 15 15 15 LYS LYS E . n E 1 16 VAL 16 16 16 VAL VAL E . n E 1 17 LEU 17 17 17 LEU LEU E . n E 1 18 ASP 18 18 18 ASP ASP E . n E 1 19 ALA 19 19 19 ALA ALA E . n E 1 20 VAL 20 20 20 VAL VAL E . n E 1 21 ARG 21 21 21 ARG ARG E . n E 1 22 GLY 22 22 22 GLY GLY E . n E 1 23 SER 23 23 23 SER SER E . n E 1 24 PRO 24 24 24 PRO PRO E . n E 1 25 ALA 25 25 25 ALA ALA E . n E 1 26 ILE 26 26 26 ILE ILE E . n E 1 27 ASN 27 27 27 ASN ASN E . n E 1 28 VAL 28 28 28 VAL VAL E . n E 1 29 ALA 29 29 29 ALA ALA E . n E 1 30 VAL 30 30 30 VAL VAL E . n E 1 31 HIS 31 31 31 HIS HIS E . n E 1 32 VAL 32 32 32 VAL VAL E . n E 1 33 PHE 33 33 33 PHE PHE E . n E 1 34 ARG 34 34 34 ARG ARG E . n E 1 35 LYS 35 35 35 LYS LYS E . n E 1 36 ALA 36 36 36 ALA ALA E . n E 1 37 ALA 37 37 ? ? ? E . n E 1 38 ASP 38 38 ? ? ? E . n E 1 39 ASP 39 39 ? ? ? E . n E 1 40 THR 40 40 ? ? ? E . n E 1 41 TRP 41 41 ? ? ? E . n E 1 42 GLU 42 42 ? ? ? E . n E 1 43 PRO 43 43 ? ? ? E . n E 1 44 PHE 44 44 ? ? ? E . n E 1 45 ALA 45 45 ? ? ? E . n E 1 46 SER 46 46 ? ? ? E . n E 1 47 GLY 47 47 ? ? ? E . n E 1 48 LYS 48 48 ? ? ? E . n E 1 49 THR 49 49 ? ? ? E . n E 1 50 SER 50 50 ? ? ? E . n E 1 51 GLU 51 51 ? ? ? E . n E 1 52 SER 52 52 ? ? ? E . n E 1 53 GLY 53 53 ? ? ? E . n E 1 54 GLU 54 54 ? ? ? E . n E 1 55 LEU 55 55 ? ? ? E . n E 1 56 HIS 56 56 ? ? ? E . n E 1 57 GLY 57 57 57 GLY GLY E . n E 1 58 LEU 58 58 58 LEU LEU E . n E 1 59 THR 59 59 59 THR THR E . n E 1 60 ALA 60 60 60 ALA ALA E . n E 1 61 GLU 61 61 61 GLU GLU E . n E 1 62 GLU 62 62 62 GLU GLU E . n E 1 63 GLU 63 63 63 GLU GLU E . n E 1 64 PHE 64 64 64 PHE PHE E . n E 1 65 VAL 65 65 65 VAL VAL E . n E 1 66 GLU 66 66 66 GLU GLU E . n E 1 67 GLY 67 67 67 GLY GLY E . n E 1 68 ILE 68 68 68 ILE ILE E . n E 1 69 TYR 69 69 69 TYR TYR E . n E 1 70 LYS 70 70 70 LYS LYS E . n E 1 71 VAL 71 71 71 VAL VAL E . n E 1 72 GLU 72 72 72 GLU GLU E . n E 1 73 ILE 73 73 73 ILE ILE E . n E 1 74 ASP 74 74 74 ASP ASP E . n E 1 75 THR 75 75 75 THR THR E . n E 1 76 LYS 76 76 76 LYS LYS E . n E 1 77 SER 77 77 77 SER SER E . n E 1 78 TYR 78 78 78 TYR TYR E . n E 1 79 TRP 79 79 79 TRP TRP E . n E 1 80 LYS 80 80 80 LYS LYS E . n E 1 81 ALA 81 81 81 ALA ALA E . n E 1 82 LEU 82 82 82 LEU LEU E . n E 1 83 GLY 83 83 83 GLY GLY E . n E 1 84 ILE 84 84 84 ILE ILE E . n E 1 85 SER 85 85 85 SER SER E . n E 1 86 PRO 86 86 86 PRO PRO E . n E 1 87 PHE 87 87 87 PHE PHE E . n E 1 88 HIS 88 88 88 HIS HIS E . n E 1 89 GLU 89 89 89 GLU GLU E . n E 1 90 HIS 90 90 90 HIS HIS E . n E 1 91 ALA 91 91 91 ALA ALA E . n E 1 92 GLU 92 92 92 GLU GLU E . n E 1 93 VAL 93 93 93 VAL VAL E . n E 1 94 VAL 94 94 94 VAL VAL E . n E 1 95 PHE 95 95 95 PHE PHE E . n E 1 96 THR 96 96 96 THR THR E . n E 1 97 ALA 97 97 97 ALA ALA E . n E 1 98 ASN 98 98 98 ASN ASN E . n E 1 99 ASP 99 99 99 ASP ASP E . n E 1 100 SER 100 100 100 SER SER E . n E 1 101 GLY 101 101 101 GLY GLY E . n E 1 102 PRO 102 102 102 PRO PRO E . n E 1 103 ARG 103 103 103 ARG ARG E . n E 1 104 ARG 104 104 104 ARG ARG E . n E 1 105 TYR 105 105 105 TYR TYR E . n E 1 106 THR 106 106 106 THR THR E . n E 1 107 ILE 107 107 107 ILE ILE E . n E 1 108 ALA 108 108 108 ALA ALA E . n E 1 109 ALA 109 109 109 ALA ALA E . n E 1 110 LEU 110 110 110 LEU LEU E . n E 1 111 LEU 111 111 111 LEU LEU E . n E 1 112 SER 112 112 112 SER SER E . n E 1 113 PRO 113 113 113 PRO PRO E . n E 1 114 TYR 114 114 114 TYR TYR E . n E 1 115 SER 115 115 115 SER SER E . n E 1 116 TYR 116 116 116 TYR TYR E . n E 1 117 SER 117 117 117 SER SER E . n E 1 118 THR 118 118 118 THR THR E . n E 1 119 THR 119 119 119 THR THR E . n E 1 120 ALA 120 120 120 ALA ALA E . n E 1 121 VAL 121 121 121 VAL VAL E . n E 1 122 VAL 122 122 122 VAL VAL E . n E 1 123 THR 123 123 123 THR THR E . n E 1 124 ASN 124 124 124 ASN ASN E . n E 1 125 PRO 125 125 ? ? ? E . n E 1 126 LYS 126 126 ? ? ? E . n E 1 127 GLU 127 127 ? ? ? E . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9D24 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9D24 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9D24 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 9D24 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.002 ? 3730 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.567 ? 5075 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 4.674 ? 505 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.050 ? 595 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.008 ? 630 ? f_plane_restr ? ? # _struct.entry_id 9D24 _struct.title 'Cryo-EM structure of amyloid fibril extracted from thyroid of a variant ATTR T60A amyloidosis patient 3' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9D24 _struct_keywords.text 'Transthyretin, Amyloidosis, ATTR, Thyroid, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TTHY_HUMAN _struct_ref.pdbx_db_accession P02766 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWK ALGISPFHEHAEVVFTANDSGPRRYTIAALLSPYSYSTTAVVTNPKE ; _struct_ref.pdbx_align_begin 21 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9D24 A 1 ? 127 ? P02766 21 ? 147 ? 1 127 2 1 9D24 B 1 ? 127 ? P02766 21 ? 147 ? 1 127 3 1 9D24 C 1 ? 127 ? P02766 21 ? 147 ? 1 127 4 1 9D24 D 1 ? 127 ? P02766 21 ? 147 ? 1 127 5 1 9D24 E 1 ? 127 ? P02766 21 ? 147 ? 1 127 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9D24 ALA A 60 ? UNP P02766 THR 80 variant 60 1 2 9D24 ALA B 60 ? UNP P02766 THR 80 variant 60 2 3 9D24 ALA C 60 ? UNP P02766 THR 80 variant 60 3 4 9D24 ALA D 60 ? UNP P02766 THR 80 variant 60 4 5 9D24 ALA E 60 ? UNP P02766 THR 80 variant 60 5 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 5 ? AA4 ? 5 ? AA5 ? 5 ? AA6 ? 5 ? AA7 ? 5 ? AA8 ? 5 ? AA9 ? 5 ? AB1 ? 5 ? AB2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA3 4 5 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA4 4 5 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA5 3 4 ? parallel AA5 4 5 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA6 3 4 ? parallel AA6 4 5 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA7 3 4 ? parallel AA7 4 5 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA8 3 4 ? parallel AA8 4 5 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AA9 3 4 ? parallel AA9 4 5 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel AB1 3 4 ? parallel AB1 4 5 ? parallel AB2 1 2 ? parallel AB2 2 3 ? parallel AB2 3 4 ? parallel AB2 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 MET D 13 ? VAL D 16 ? MET D 13 VAL D 16 AA1 2 MET B 13 ? VAL B 16 ? MET B 13 VAL B 16 AA1 3 MET A 13 ? VAL A 16 ? MET A 13 VAL A 16 AA1 4 MET C 13 ? VAL C 16 ? MET C 13 VAL C 16 AA1 5 MET E 13 ? VAL E 16 ? MET E 13 VAL E 16 AA2 1 ALA D 19 ? ARG D 21 ? ALA D 19 ARG D 21 AA2 2 ALA B 19 ? ARG B 21 ? ALA B 19 ARG B 21 AA2 3 ALA A 19 ? ARG A 21 ? ALA A 19 ARG A 21 AA2 4 ALA C 19 ? ARG C 21 ? ALA C 19 ARG C 21 AA2 5 ALA E 19 ? ARG E 21 ? ALA E 19 ARG E 21 AA3 1 ALA D 25 ? LYS D 35 ? ALA D 25 LYS D 35 AA3 2 ALA B 25 ? LYS B 35 ? ALA B 25 LYS B 35 AA3 3 ALA A 25 ? LYS A 35 ? ALA A 25 LYS A 35 AA3 4 ALA C 25 ? LYS C 35 ? ALA C 25 LYS C 35 AA3 5 ALA E 25 ? LYS E 35 ? ALA E 25 LYS E 35 AA4 1 THR D 59 ? GLU D 62 ? THR D 59 GLU D 62 AA4 2 THR B 59 ? GLU B 62 ? THR B 59 GLU B 62 AA4 3 THR A 59 ? GLU A 62 ? THR A 59 GLU A 62 AA4 4 THR C 59 ? GLU C 62 ? THR C 59 GLU C 62 AA4 5 THR E 59 ? GLU E 62 ? THR E 59 GLU E 62 AA5 1 VAL D 65 ? GLU D 66 ? VAL D 65 GLU D 66 AA5 2 VAL B 65 ? GLU B 66 ? VAL B 65 GLU B 66 AA5 3 VAL A 65 ? GLU A 66 ? VAL A 65 GLU A 66 AA5 4 VAL C 65 ? GLU C 66 ? VAL C 65 GLU C 66 AA5 5 VAL E 65 ? GLU E 66 ? VAL E 65 GLU E 66 AA6 1 LYS D 70 ? ILE D 73 ? LYS D 70 ILE D 73 AA6 2 LYS B 70 ? ILE B 73 ? LYS B 70 ILE B 73 AA6 3 LYS A 70 ? ILE A 73 ? LYS A 70 ILE A 73 AA6 4 LYS C 70 ? ILE C 73 ? LYS C 70 ILE C 73 AA6 5 LYS E 70 ? ILE E 73 ? LYS E 70 ILE E 73 AA7 1 LYS D 76 ? LYS D 80 ? LYS D 76 LYS D 80 AA7 2 LYS B 76 ? LYS B 80 ? LYS B 76 LYS B 80 AA7 3 LYS A 76 ? LYS A 80 ? LYS A 76 LYS A 80 AA7 4 LYS C 76 ? LYS C 80 ? LYS C 76 LYS C 80 AA7 5 LYS E 76 ? LYS E 80 ? LYS E 76 LYS E 80 AA8 1 GLY D 83 ? ILE D 84 ? GLY D 83 ILE D 84 AA8 2 GLY B 83 ? ILE B 84 ? GLY B 83 ILE B 84 AA8 3 GLY A 83 ? ILE A 84 ? GLY A 83 ILE A 84 AA8 4 GLY C 83 ? ILE C 84 ? GLY C 83 ILE C 84 AA8 5 GLY E 83 ? ILE E 84 ? GLY E 83 ILE E 84 AA9 1 GLU D 92 ? ASP D 99 ? GLU D 92 ASP D 99 AA9 2 GLU B 92 ? ASP B 99 ? GLU B 92 ASP B 99 AA9 3 GLU A 92 ? ASP A 99 ? GLU A 92 ASP A 99 AA9 4 GLU C 92 ? ASP C 99 ? GLU C 92 ASP C 99 AA9 5 GLU E 92 ? ASP E 99 ? GLU E 92 ASP E 99 AB1 1 ARG D 103 ? LEU D 110 ? ARG D 103 LEU D 110 AB1 2 ARG B 103 ? LEU B 110 ? ARG B 103 LEU B 110 AB1 3 ARG A 103 ? LEU A 110 ? ARG A 103 LEU A 110 AB1 4 ARG C 103 ? LEU C 110 ? ARG C 103 LEU C 110 AB1 5 ARG E 103 ? LEU E 110 ? ARG E 103 LEU E 110 AB2 1 THR D 118 ? THR D 123 ? THR D 118 THR D 123 AB2 2 THR B 118 ? THR B 123 ? THR B 118 THR B 123 AB2 3 THR A 118 ? THR A 123 ? THR A 118 THR A 123 AB2 4 THR C 118 ? THR C 123 ? THR C 118 THR C 123 AB2 5 THR E 118 ? THR E 123 ? THR E 118 THR E 123 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O VAL D 16 ? O VAL D 16 N LYS B 15 ? N LYS B 15 AA1 2 3 O VAL B 16 ? O VAL B 16 N LYS A 15 ? N LYS A 15 AA1 3 4 N VAL A 16 ? N VAL A 16 O LYS C 15 ? O LYS C 15 AA1 4 5 N VAL C 16 ? N VAL C 16 O LYS E 15 ? O LYS E 15 AA2 1 2 O VAL D 20 ? O VAL D 20 N ALA B 19 ? N ALA B 19 AA2 2 3 O VAL B 20 ? O VAL B 20 N ALA A 19 ? N ALA A 19 AA2 3 4 N VAL A 20 ? N VAL A 20 O ALA C 19 ? O ALA C 19 AA2 4 5 N VAL C 20 ? N VAL C 20 O ALA E 19 ? O ALA E 19 AA3 1 2 O VAL D 28 ? O VAL D 28 N ASN B 27 ? N ASN B 27 AA3 2 3 O VAL B 28 ? O VAL B 28 N ASN A 27 ? N ASN A 27 AA3 3 4 N VAL A 28 ? N VAL A 28 O ASN C 27 ? O ASN C 27 AA3 4 5 N VAL C 28 ? N VAL C 28 O ASN E 27 ? O ASN E 27 AA4 1 2 O THR D 59 ? O THR D 59 N ALA B 60 ? N ALA B 60 AA4 2 3 O THR B 59 ? O THR B 59 N ALA A 60 ? N ALA A 60 AA4 3 4 N THR A 59 ? N THR A 59 O ALA C 60 ? O ALA C 60 AA4 4 5 N THR C 59 ? N THR C 59 O ALA E 60 ? O ALA E 60 AA5 1 2 O GLU D 66 ? O GLU D 66 N VAL B 65 ? N VAL B 65 AA5 2 3 O GLU B 66 ? O GLU B 66 N VAL A 65 ? N VAL A 65 AA5 3 4 N GLU A 66 ? N GLU A 66 O VAL C 65 ? O VAL C 65 AA5 4 5 N GLU C 66 ? N GLU C 66 O VAL E 65 ? O VAL E 65 AA6 1 2 O GLU D 72 ? O GLU D 72 N ILE B 73 ? N ILE B 73 AA6 2 3 O GLU B 72 ? O GLU B 72 N ILE A 73 ? N ILE A 73 AA6 3 4 N GLU A 72 ? N GLU A 72 O ILE C 73 ? O ILE C 73 AA6 4 5 N GLU C 72 ? N GLU C 72 O ILE E 73 ? O ILE E 73 AA7 1 2 O TYR D 78 ? O TYR D 78 N TRP B 79 ? N TRP B 79 AA7 2 3 O TYR B 78 ? O TYR B 78 N TRP A 79 ? N TRP A 79 AA7 3 4 N TYR A 78 ? N TYR A 78 O TRP C 79 ? O TRP C 79 AA7 4 5 N TYR C 78 ? N TYR C 78 O TRP E 79 ? O TRP E 79 AA8 1 2 O ILE D 84 ? O ILE D 84 N GLY B 83 ? N GLY B 83 AA8 2 3 O ILE B 84 ? O ILE B 84 N GLY A 83 ? N GLY A 83 AA8 3 4 N ILE A 84 ? N ILE A 84 O GLY C 83 ? O GLY C 83 AA8 4 5 N ILE C 84 ? N ILE C 84 O GLY E 83 ? O GLY E 83 AA9 1 2 O ASN D 98 ? O ASN D 98 N ALA B 97 ? N ALA B 97 AA9 2 3 O ASN B 98 ? O ASN B 98 N ALA A 97 ? N ALA A 97 AA9 3 4 N ASN A 98 ? N ASN A 98 O ALA C 97 ? O ALA C 97 AA9 4 5 N ASN C 98 ? N ASN C 98 O ALA E 97 ? O ALA E 97 AB1 1 2 O ALA D 108 ? O ALA D 108 N ALA B 109 ? N ALA B 109 AB1 2 3 O ALA B 108 ? O ALA B 108 N ALA A 109 ? N ALA A 109 AB1 3 4 N ALA A 108 ? N ALA A 108 O ALA C 109 ? O ALA C 109 AB1 4 5 N ALA C 108 ? N ALA C 108 O ALA E 109 ? O ALA E 109 AB2 1 2 O THR D 119 ? O THR D 119 N THR B 118 ? N THR B 118 AB2 2 3 O THR B 119 ? O THR B 119 N THR A 118 ? N THR A 118 AB2 3 4 N THR A 119 ? N THR A 119 O THR C 118 ? O THR C 118 AB2 4 5 N THR C 119 ? N THR C 119 O THR E 118 ? O THR E 118 # _pdbx_entry_details.entry_id 9D24 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 63 ? ? 37.61 58.89 2 1 GLU B 63 ? ? 37.63 58.91 3 1 GLU C 63 ? ? 37.58 58.92 4 1 GLU D 63 ? ? 37.59 58.92 5 1 GLU E 63 ? ? 37.64 58.88 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9D24 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'RIGID BODY FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 9d23 _em_3d_fitting_list.pdb_chain_id A _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id A _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 9d23 _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 9D24 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.98 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 133439 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details 'We used water as the buffer for the final elution of fibrils' _em_buffer.pH 7 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type TISSUE _em_entity_assembly.name 'Amyloid fibril from thyroid of a variant ATTR T60A amyloidosis patient' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9D24 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 900 _em_imaging.nominal_defocus_max 2200 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9D24 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 295.15 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9D24 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A PRO 2 ? A PRO 2 3 1 Y 1 A THR 3 ? A THR 3 4 1 Y 1 A GLY 4 ? A GLY 4 5 1 Y 1 A THR 5 ? A THR 5 6 1 Y 1 A GLY 6 ? A GLY 6 7 1 Y 1 A GLU 7 ? A GLU 7 8 1 Y 1 A SER 8 ? A SER 8 9 1 Y 1 A LYS 9 ? A LYS 9 10 1 Y 1 A CYS 10 ? A CYS 10 11 1 Y 1 A ALA 37 ? A ALA 37 12 1 Y 1 A ASP 38 ? A ASP 38 13 1 Y 1 A ASP 39 ? A ASP 39 14 1 Y 1 A THR 40 ? A THR 40 15 1 Y 1 A TRP 41 ? A TRP 41 16 1 Y 1 A GLU 42 ? A GLU 42 17 1 Y 1 A PRO 43 ? A PRO 43 18 1 Y 1 A PHE 44 ? A PHE 44 19 1 Y 1 A ALA 45 ? A ALA 45 20 1 Y 1 A SER 46 ? A SER 46 21 1 Y 1 A GLY 47 ? A GLY 47 22 1 Y 1 A LYS 48 ? A LYS 48 23 1 Y 1 A THR 49 ? A THR 49 24 1 Y 1 A SER 50 ? A SER 50 25 1 Y 1 A GLU 51 ? A GLU 51 26 1 Y 1 A SER 52 ? A SER 52 27 1 Y 1 A GLY 53 ? A GLY 53 28 1 Y 1 A GLU 54 ? A GLU 54 29 1 Y 1 A LEU 55 ? A LEU 55 30 1 Y 1 A HIS 56 ? A HIS 56 31 1 Y 1 A PRO 125 ? A PRO 125 32 1 Y 1 A LYS 126 ? A LYS 126 33 1 Y 1 A GLU 127 ? A GLU 127 34 1 Y 1 B GLY 1 ? B GLY 1 35 1 Y 1 B PRO 2 ? B PRO 2 36 1 Y 1 B THR 3 ? B THR 3 37 1 Y 1 B GLY 4 ? B GLY 4 38 1 Y 1 B THR 5 ? B THR 5 39 1 Y 1 B GLY 6 ? B GLY 6 40 1 Y 1 B GLU 7 ? B GLU 7 41 1 Y 1 B SER 8 ? B SER 8 42 1 Y 1 B LYS 9 ? B LYS 9 43 1 Y 1 B CYS 10 ? B CYS 10 44 1 Y 1 B ALA 37 ? B ALA 37 45 1 Y 1 B ASP 38 ? B ASP 38 46 1 Y 1 B ASP 39 ? B ASP 39 47 1 Y 1 B THR 40 ? B THR 40 48 1 Y 1 B TRP 41 ? B TRP 41 49 1 Y 1 B GLU 42 ? B GLU 42 50 1 Y 1 B PRO 43 ? B PRO 43 51 1 Y 1 B PHE 44 ? B PHE 44 52 1 Y 1 B ALA 45 ? B ALA 45 53 1 Y 1 B SER 46 ? B SER 46 54 1 Y 1 B GLY 47 ? B GLY 47 55 1 Y 1 B LYS 48 ? B LYS 48 56 1 Y 1 B THR 49 ? B THR 49 57 1 Y 1 B SER 50 ? B SER 50 58 1 Y 1 B GLU 51 ? B GLU 51 59 1 Y 1 B SER 52 ? B SER 52 60 1 Y 1 B GLY 53 ? B GLY 53 61 1 Y 1 B GLU 54 ? B GLU 54 62 1 Y 1 B LEU 55 ? B LEU 55 63 1 Y 1 B HIS 56 ? B HIS 56 64 1 Y 1 B PRO 125 ? B PRO 125 65 1 Y 1 B LYS 126 ? B LYS 126 66 1 Y 1 B GLU 127 ? B GLU 127 67 1 Y 1 C GLY 1 ? C GLY 1 68 1 Y 1 C PRO 2 ? C PRO 2 69 1 Y 1 C THR 3 ? C THR 3 70 1 Y 1 C GLY 4 ? C GLY 4 71 1 Y 1 C THR 5 ? C THR 5 72 1 Y 1 C GLY 6 ? C GLY 6 73 1 Y 1 C GLU 7 ? C GLU 7 74 1 Y 1 C SER 8 ? C SER 8 75 1 Y 1 C LYS 9 ? C LYS 9 76 1 Y 1 C CYS 10 ? C CYS 10 77 1 Y 1 C ALA 37 ? C ALA 37 78 1 Y 1 C ASP 38 ? C ASP 38 79 1 Y 1 C ASP 39 ? C ASP 39 80 1 Y 1 C THR 40 ? C THR 40 81 1 Y 1 C TRP 41 ? C TRP 41 82 1 Y 1 C GLU 42 ? C GLU 42 83 1 Y 1 C PRO 43 ? C PRO 43 84 1 Y 1 C PHE 44 ? C PHE 44 85 1 Y 1 C ALA 45 ? C ALA 45 86 1 Y 1 C SER 46 ? C SER 46 87 1 Y 1 C GLY 47 ? C GLY 47 88 1 Y 1 C LYS 48 ? C LYS 48 89 1 Y 1 C THR 49 ? C THR 49 90 1 Y 1 C SER 50 ? C SER 50 91 1 Y 1 C GLU 51 ? C GLU 51 92 1 Y 1 C SER 52 ? C SER 52 93 1 Y 1 C GLY 53 ? C GLY 53 94 1 Y 1 C GLU 54 ? C GLU 54 95 1 Y 1 C LEU 55 ? C LEU 55 96 1 Y 1 C HIS 56 ? C HIS 56 97 1 Y 1 C PRO 125 ? C PRO 125 98 1 Y 1 C LYS 126 ? C LYS 126 99 1 Y 1 C GLU 127 ? C GLU 127 100 1 Y 1 D GLY 1 ? D GLY 1 101 1 Y 1 D PRO 2 ? D PRO 2 102 1 Y 1 D THR 3 ? D THR 3 103 1 Y 1 D GLY 4 ? D GLY 4 104 1 Y 1 D THR 5 ? D THR 5 105 1 Y 1 D GLY 6 ? D GLY 6 106 1 Y 1 D GLU 7 ? D GLU 7 107 1 Y 1 D SER 8 ? D SER 8 108 1 Y 1 D LYS 9 ? D LYS 9 109 1 Y 1 D CYS 10 ? D CYS 10 110 1 Y 1 D ALA 37 ? D ALA 37 111 1 Y 1 D ASP 38 ? D ASP 38 112 1 Y 1 D ASP 39 ? D ASP 39 113 1 Y 1 D THR 40 ? D THR 40 114 1 Y 1 D TRP 41 ? D TRP 41 115 1 Y 1 D GLU 42 ? D GLU 42 116 1 Y 1 D PRO 43 ? D PRO 43 117 1 Y 1 D PHE 44 ? D PHE 44 118 1 Y 1 D ALA 45 ? D ALA 45 119 1 Y 1 D SER 46 ? D SER 46 120 1 Y 1 D GLY 47 ? D GLY 47 121 1 Y 1 D LYS 48 ? D LYS 48 122 1 Y 1 D THR 49 ? D THR 49 123 1 Y 1 D SER 50 ? D SER 50 124 1 Y 1 D GLU 51 ? D GLU 51 125 1 Y 1 D SER 52 ? D SER 52 126 1 Y 1 D GLY 53 ? D GLY 53 127 1 Y 1 D GLU 54 ? D GLU 54 128 1 Y 1 D LEU 55 ? D LEU 55 129 1 Y 1 D HIS 56 ? D HIS 56 130 1 Y 1 D PRO 125 ? D PRO 125 131 1 Y 1 D LYS 126 ? D LYS 126 132 1 Y 1 D GLU 127 ? D GLU 127 133 1 Y 1 E GLY 1 ? E GLY 1 134 1 Y 1 E PRO 2 ? E PRO 2 135 1 Y 1 E THR 3 ? E THR 3 136 1 Y 1 E GLY 4 ? E GLY 4 137 1 Y 1 E THR 5 ? E THR 5 138 1 Y 1 E GLY 6 ? E GLY 6 139 1 Y 1 E GLU 7 ? E GLU 7 140 1 Y 1 E SER 8 ? E SER 8 141 1 Y 1 E LYS 9 ? E LYS 9 142 1 Y 1 E CYS 10 ? E CYS 10 143 1 Y 1 E ALA 37 ? E ALA 37 144 1 Y 1 E ASP 38 ? E ASP 38 145 1 Y 1 E ASP 39 ? E ASP 39 146 1 Y 1 E THR 40 ? E THR 40 147 1 Y 1 E TRP 41 ? E TRP 41 148 1 Y 1 E GLU 42 ? E GLU 42 149 1 Y 1 E PRO 43 ? E PRO 43 150 1 Y 1 E PHE 44 ? E PHE 44 151 1 Y 1 E ALA 45 ? E ALA 45 152 1 Y 1 E SER 46 ? E SER 46 153 1 Y 1 E GLY 47 ? E GLY 47 154 1 Y 1 E LYS 48 ? E LYS 48 155 1 Y 1 E THR 49 ? E THR 49 156 1 Y 1 E SER 50 ? E SER 50 157 1 Y 1 E GLU 51 ? E GLU 51 158 1 Y 1 E SER 52 ? E SER 52 159 1 Y 1 E GLY 53 ? E GLY 53 160 1 Y 1 E GLU 54 ? E GLU 54 161 1 Y 1 E LEU 55 ? E LEU 55 162 1 Y 1 E HIS 56 ? E HIS 56 163 1 Y 1 E PRO 125 ? E PRO 125 164 1 Y 1 E LYS 126 ? E LYS 126 165 1 Y 1 E GLU 127 ? E GLU 127 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLU N N N N 88 GLU CA C N S 89 GLU C C N N 90 GLU O O N N 91 GLU CB C N N 92 GLU CG C N N 93 GLU CD C N N 94 GLU OE1 O N N 95 GLU OE2 O N N 96 GLU OXT O N N 97 GLU H H N N 98 GLU H2 H N N 99 GLU HA H N N 100 GLU HB2 H N N 101 GLU HB3 H N N 102 GLU HG2 H N N 103 GLU HG3 H N N 104 GLU HE2 H N N 105 GLU HXT H N N 106 GLY N N N N 107 GLY CA C N N 108 GLY C C N N 109 GLY O O N N 110 GLY OXT O N N 111 GLY H H N N 112 GLY H2 H N N 113 GLY HA2 H N N 114 GLY HA3 H N N 115 GLY HXT H N N 116 HIS N N N N 117 HIS CA C N S 118 HIS C C N N 119 HIS O O N N 120 HIS CB C N N 121 HIS CG C Y N 122 HIS ND1 N Y N 123 HIS CD2 C Y N 124 HIS CE1 C Y N 125 HIS NE2 N Y N 126 HIS OXT O N N 127 HIS H H N N 128 HIS H2 H N N 129 HIS HA H N N 130 HIS HB2 H N N 131 HIS HB3 H N N 132 HIS HD1 H N N 133 HIS HD2 H N N 134 HIS HE1 H N N 135 HIS HE2 H N N 136 HIS HXT H N N 137 ILE N N N N 138 ILE CA C N S 139 ILE C C N N 140 ILE O O N N 141 ILE CB C N S 142 ILE CG1 C N N 143 ILE CG2 C N N 144 ILE CD1 C N N 145 ILE OXT O N N 146 ILE H H N N 147 ILE H2 H N N 148 ILE HA H N N 149 ILE HB H N N 150 ILE HG12 H N N 151 ILE HG13 H N N 152 ILE HG21 H N N 153 ILE HG22 H N N 154 ILE HG23 H N N 155 ILE HD11 H N N 156 ILE HD12 H N N 157 ILE HD13 H N N 158 ILE HXT H N N 159 LEU N N N N 160 LEU CA C N S 161 LEU C C N N 162 LEU O O N N 163 LEU CB C N N 164 LEU CG C N N 165 LEU CD1 C N N 166 LEU CD2 C N N 167 LEU OXT O N N 168 LEU H H N N 169 LEU H2 H N N 170 LEU HA H N N 171 LEU HB2 H N N 172 LEU HB3 H N N 173 LEU HG H N N 174 LEU HD11 H N N 175 LEU HD12 H N N 176 LEU HD13 H N N 177 LEU HD21 H N N 178 LEU HD22 H N N 179 LEU HD23 H N N 180 LEU HXT H N N 181 LYS N N N N 182 LYS CA C N S 183 LYS C C N N 184 LYS O O N N 185 LYS CB C N N 186 LYS CG C N N 187 LYS CD C N N 188 LYS CE C N N 189 LYS NZ N N N 190 LYS OXT O N N 191 LYS H H N N 192 LYS H2 H N N 193 LYS HA H N N 194 LYS HB2 H N N 195 LYS HB3 H N N 196 LYS HG2 H N N 197 LYS HG3 H N N 198 LYS HD2 H N N 199 LYS HD3 H N N 200 LYS HE2 H N N 201 LYS HE3 H N N 202 LYS HZ1 H N N 203 LYS HZ2 H N N 204 LYS HZ3 H N N 205 LYS HXT H N N 206 MET N N N N 207 MET CA C N S 208 MET C C N N 209 MET O O N N 210 MET CB C N N 211 MET CG C N N 212 MET SD S N N 213 MET CE C N N 214 MET OXT O N N 215 MET H H N N 216 MET H2 H N N 217 MET HA H N N 218 MET HB2 H N N 219 MET HB3 H N N 220 MET HG2 H N N 221 MET HG3 H N N 222 MET HE1 H N N 223 MET HE2 H N N 224 MET HE3 H N N 225 MET HXT H N N 226 PHE N N N N 227 PHE CA C N S 228 PHE C C N N 229 PHE O O N N 230 PHE CB C N N 231 PHE CG C Y N 232 PHE CD1 C Y N 233 PHE CD2 C Y N 234 PHE CE1 C Y N 235 PHE CE2 C Y N 236 PHE CZ C Y N 237 PHE OXT O N N 238 PHE H H N N 239 PHE H2 H N N 240 PHE HA H N N 241 PHE HB2 H N N 242 PHE HB3 H N N 243 PHE HD1 H N N 244 PHE HD2 H N N 245 PHE HE1 H N N 246 PHE HE2 H N N 247 PHE HZ H N N 248 PHE HXT H N N 249 PRO N N N N 250 PRO CA C N S 251 PRO C C N N 252 PRO O O N N 253 PRO CB C N N 254 PRO CG C N N 255 PRO CD C N N 256 PRO OXT O N N 257 PRO H H N N 258 PRO HA H N N 259 PRO HB2 H N N 260 PRO HB3 H N N 261 PRO HG2 H N N 262 PRO HG3 H N N 263 PRO HD2 H N N 264 PRO HD3 H N N 265 PRO HXT H N N 266 SER N N N N 267 SER CA C N S 268 SER C C N N 269 SER O O N N 270 SER CB C N N 271 SER OG O N N 272 SER OXT O N N 273 SER H H N N 274 SER H2 H N N 275 SER HA H N N 276 SER HB2 H N N 277 SER HB3 H N N 278 SER HG H N N 279 SER HXT H N N 280 THR N N N N 281 THR CA C N S 282 THR C C N N 283 THR O O N N 284 THR CB C N R 285 THR OG1 O N N 286 THR CG2 C N N 287 THR OXT O N N 288 THR H H N N 289 THR H2 H N N 290 THR HA H N N 291 THR HB H N N 292 THR HG1 H N N 293 THR HG21 H N N 294 THR HG22 H N N 295 THR HG23 H N N 296 THR HXT H N N 297 TRP N N N N 298 TRP CA C N S 299 TRP C C N N 300 TRP O O N N 301 TRP CB C N N 302 TRP CG C Y N 303 TRP CD1 C Y N 304 TRP CD2 C Y N 305 TRP NE1 N Y N 306 TRP CE2 C Y N 307 TRP CE3 C Y N 308 TRP CZ2 C Y N 309 TRP CZ3 C Y N 310 TRP CH2 C Y N 311 TRP OXT O N N 312 TRP H H N N 313 TRP H2 H N N 314 TRP HA H N N 315 TRP HB2 H N N 316 TRP HB3 H N N 317 TRP HD1 H N N 318 TRP HE1 H N N 319 TRP HE3 H N N 320 TRP HZ2 H N N 321 TRP HZ3 H N N 322 TRP HH2 H N N 323 TRP HXT H N N 324 TYR N N N N 325 TYR CA C N S 326 TYR C C N N 327 TYR O O N N 328 TYR CB C N N 329 TYR CG C Y N 330 TYR CD1 C Y N 331 TYR CD2 C Y N 332 TYR CE1 C Y N 333 TYR CE2 C Y N 334 TYR CZ C Y N 335 TYR OH O N N 336 TYR OXT O N N 337 TYR H H N N 338 TYR H2 H N N 339 TYR HA H N N 340 TYR HB2 H N N 341 TYR HB3 H N N 342 TYR HD1 H N N 343 TYR HD2 H N N 344 TYR HE1 H N N 345 TYR HE2 H N N 346 TYR HH H N N 347 TYR HXT H N N 348 VAL N N N N 349 VAL CA C N S 350 VAL C C N N 351 VAL O O N N 352 VAL CB C N N 353 VAL CG1 C N N 354 VAL CG2 C N N 355 VAL OXT O N N 356 VAL H H N N 357 VAL H2 H N N 358 VAL HA H N N 359 VAL HB H N N 360 VAL HG11 H N N 361 VAL HG12 H N N 362 VAL HG13 H N N 363 VAL HG21 H N N 364 VAL HG22 H N N 365 VAL HG23 H N N 366 VAL HXT H N N 367 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLU N CA sing N N 83 GLU N H sing N N 84 GLU N H2 sing N N 85 GLU CA C sing N N 86 GLU CA CB sing N N 87 GLU CA HA sing N N 88 GLU C O doub N N 89 GLU C OXT sing N N 90 GLU CB CG sing N N 91 GLU CB HB2 sing N N 92 GLU CB HB3 sing N N 93 GLU CG CD sing N N 94 GLU CG HG2 sing N N 95 GLU CG HG3 sing N N 96 GLU CD OE1 doub N N 97 GLU CD OE2 sing N N 98 GLU OE2 HE2 sing N N 99 GLU OXT HXT sing N N 100 GLY N CA sing N N 101 GLY N H sing N N 102 GLY N H2 sing N N 103 GLY CA C sing N N 104 GLY CA HA2 sing N N 105 GLY CA HA3 sing N N 106 GLY C O doub N N 107 GLY C OXT sing N N 108 GLY OXT HXT sing N N 109 HIS N CA sing N N 110 HIS N H sing N N 111 HIS N H2 sing N N 112 HIS CA C sing N N 113 HIS CA CB sing N N 114 HIS CA HA sing N N 115 HIS C O doub N N 116 HIS C OXT sing N N 117 HIS CB CG sing N N 118 HIS CB HB2 sing N N 119 HIS CB HB3 sing N N 120 HIS CG ND1 sing Y N 121 HIS CG CD2 doub Y N 122 HIS ND1 CE1 doub Y N 123 HIS ND1 HD1 sing N N 124 HIS CD2 NE2 sing Y N 125 HIS CD2 HD2 sing N N 126 HIS CE1 NE2 sing Y N 127 HIS CE1 HE1 sing N N 128 HIS NE2 HE2 sing N N 129 HIS OXT HXT sing N N 130 ILE N CA sing N N 131 ILE N H sing N N 132 ILE N H2 sing N N 133 ILE CA C sing N N 134 ILE CA CB sing N N 135 ILE CA HA sing N N 136 ILE C O doub N N 137 ILE C OXT sing N N 138 ILE CB CG1 sing N N 139 ILE CB CG2 sing N N 140 ILE CB HB sing N N 141 ILE CG1 CD1 sing N N 142 ILE CG1 HG12 sing N N 143 ILE CG1 HG13 sing N N 144 ILE CG2 HG21 sing N N 145 ILE CG2 HG22 sing N N 146 ILE CG2 HG23 sing N N 147 ILE CD1 HD11 sing N N 148 ILE CD1 HD12 sing N N 149 ILE CD1 HD13 sing N N 150 ILE OXT HXT sing N N 151 LEU N CA sing N N 152 LEU N H sing N N 153 LEU N H2 sing N N 154 LEU CA C sing N N 155 LEU CA CB sing N N 156 LEU CA HA sing N N 157 LEU C O doub N N 158 LEU C OXT sing N N 159 LEU CB CG sing N N 160 LEU CB HB2 sing N N 161 LEU CB HB3 sing N N 162 LEU CG CD1 sing N N 163 LEU CG CD2 sing N N 164 LEU CG HG sing N N 165 LEU CD1 HD11 sing N N 166 LEU CD1 HD12 sing N N 167 LEU CD1 HD13 sing N N 168 LEU CD2 HD21 sing N N 169 LEU CD2 HD22 sing N N 170 LEU CD2 HD23 sing N N 171 LEU OXT HXT sing N N 172 LYS N CA sing N N 173 LYS N H sing N N 174 LYS N H2 sing N N 175 LYS CA C sing N N 176 LYS CA CB sing N N 177 LYS CA HA sing N N 178 LYS C O doub N N 179 LYS C OXT sing N N 180 LYS CB CG sing N N 181 LYS CB HB2 sing N N 182 LYS CB HB3 sing N N 183 LYS CG CD sing N N 184 LYS CG HG2 sing N N 185 LYS CG HG3 sing N N 186 LYS CD CE sing N N 187 LYS CD HD2 sing N N 188 LYS CD HD3 sing N N 189 LYS CE NZ sing N N 190 LYS CE HE2 sing N N 191 LYS CE HE3 sing N N 192 LYS NZ HZ1 sing N N 193 LYS NZ HZ2 sing N N 194 LYS NZ HZ3 sing N N 195 LYS OXT HXT sing N N 196 MET N CA sing N N 197 MET N H sing N N 198 MET N H2 sing N N 199 MET CA C sing N N 200 MET CA CB sing N N 201 MET CA HA sing N N 202 MET C O doub N N 203 MET C OXT sing N N 204 MET CB CG sing N N 205 MET CB HB2 sing N N 206 MET CB HB3 sing N N 207 MET CG SD sing N N 208 MET CG HG2 sing N N 209 MET CG HG3 sing N N 210 MET SD CE sing N N 211 MET CE HE1 sing N N 212 MET CE HE2 sing N N 213 MET CE HE3 sing N N 214 MET OXT HXT sing N N 215 PHE N CA sing N N 216 PHE N H sing N N 217 PHE N H2 sing N N 218 PHE CA C sing N N 219 PHE CA CB sing N N 220 PHE CA HA sing N N 221 PHE C O doub N N 222 PHE C OXT sing N N 223 PHE CB CG sing N N 224 PHE CB HB2 sing N N 225 PHE CB HB3 sing N N 226 PHE CG CD1 doub Y N 227 PHE CG CD2 sing Y N 228 PHE CD1 CE1 sing Y N 229 PHE CD1 HD1 sing N N 230 PHE CD2 CE2 doub Y N 231 PHE CD2 HD2 sing N N 232 PHE CE1 CZ doub Y N 233 PHE CE1 HE1 sing N N 234 PHE CE2 CZ sing Y N 235 PHE CE2 HE2 sing N N 236 PHE CZ HZ sing N N 237 PHE OXT HXT sing N N 238 PRO N CA sing N N 239 PRO N CD sing N N 240 PRO N H sing N N 241 PRO CA C sing N N 242 PRO CA CB sing N N 243 PRO CA HA sing N N 244 PRO C O doub N N 245 PRO C OXT sing N N 246 PRO CB CG sing N N 247 PRO CB HB2 sing N N 248 PRO CB HB3 sing N N 249 PRO CG CD sing N N 250 PRO CG HG2 sing N N 251 PRO CG HG3 sing N N 252 PRO CD HD2 sing N N 253 PRO CD HD3 sing N N 254 PRO OXT HXT sing N N 255 SER N CA sing N N 256 SER N H sing N N 257 SER N H2 sing N N 258 SER CA C sing N N 259 SER CA CB sing N N 260 SER CA HA sing N N 261 SER C O doub N N 262 SER C OXT sing N N 263 SER CB OG sing N N 264 SER CB HB2 sing N N 265 SER CB HB3 sing N N 266 SER OG HG sing N N 267 SER OXT HXT sing N N 268 THR N CA sing N N 269 THR N H sing N N 270 THR N H2 sing N N 271 THR CA C sing N N 272 THR CA CB sing N N 273 THR CA HA sing N N 274 THR C O doub N N 275 THR C OXT sing N N 276 THR CB OG1 sing N N 277 THR CB CG2 sing N N 278 THR CB HB sing N N 279 THR OG1 HG1 sing N N 280 THR CG2 HG21 sing N N 281 THR CG2 HG22 sing N N 282 THR CG2 HG23 sing N N 283 THR OXT HXT sing N N 284 TRP N CA sing N N 285 TRP N H sing N N 286 TRP N H2 sing N N 287 TRP CA C sing N N 288 TRP CA CB sing N N 289 TRP CA HA sing N N 290 TRP C O doub N N 291 TRP C OXT sing N N 292 TRP CB CG sing N N 293 TRP CB HB2 sing N N 294 TRP CB HB3 sing N N 295 TRP CG CD1 doub Y N 296 TRP CG CD2 sing Y N 297 TRP CD1 NE1 sing Y N 298 TRP CD1 HD1 sing N N 299 TRP CD2 CE2 doub Y N 300 TRP CD2 CE3 sing Y N 301 TRP NE1 CE2 sing Y N 302 TRP NE1 HE1 sing N N 303 TRP CE2 CZ2 sing Y N 304 TRP CE3 CZ3 doub Y N 305 TRP CE3 HE3 sing N N 306 TRP CZ2 CH2 doub Y N 307 TRP CZ2 HZ2 sing N N 308 TRP CZ3 CH2 sing Y N 309 TRP CZ3 HZ3 sing N N 310 TRP CH2 HH2 sing N N 311 TRP OXT HXT sing N N 312 TYR N CA sing N N 313 TYR N H sing N N 314 TYR N H2 sing N N 315 TYR CA C sing N N 316 TYR CA CB sing N N 317 TYR CA HA sing N N 318 TYR C O doub N N 319 TYR C OXT sing N N 320 TYR CB CG sing N N 321 TYR CB HB2 sing N N 322 TYR CB HB3 sing N N 323 TYR CG CD1 doub Y N 324 TYR CG CD2 sing Y N 325 TYR CD1 CE1 sing Y N 326 TYR CD1 HD1 sing N N 327 TYR CD2 CE2 doub Y N 328 TYR CD2 HD2 sing N N 329 TYR CE1 CZ doub Y N 330 TYR CE1 HE1 sing N N 331 TYR CE2 CZ sing Y N 332 TYR CE2 HE2 sing N N 333 TYR CZ OH sing N N 334 TYR OH HH sing N N 335 TYR OXT HXT sing N N 336 VAL N CA sing N N 337 VAL N H sing N N 338 VAL N H2 sing N N 339 VAL CA C sing N N 340 VAL CA CB sing N N 341 VAL CA HA sing N N 342 VAL C O doub N N 343 VAL C OXT sing N N 344 VAL CB CG1 sing N N 345 VAL CB CG2 sing N N 346 VAL CB HB sing N N 347 VAL CG1 HG11 sing N N 348 VAL CG1 HG12 sing N N 349 VAL CG1 HG13 sing N N 350 VAL CG2 HG21 sing N N 351 VAL CG2 HG22 sing N N 352 VAL CG2 HG23 sing N N 353 VAL OXT HXT sing N N 354 # _em_admin.current_status REL _em_admin.deposition_date 2024-08-08 _em_admin.deposition_site RCSB _em_admin.entry_id 9D24 _em_admin.last_update 2025-12-17 _em_admin.map_release_date 2025-08-13 _em_admin.title 'Cryo-EM structure of amyloid fibril extracted from thyroid of a variant ATTR T60A amyloidosis patient 3' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location extracellular _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ Thyroid _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue Thyroid _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -1.23 _em_helical_entity.axial_rise_per_subunit 4.79 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 1.8 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 6236 # _em_particle_selection.details 'particle boxsize of 256 px' _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 675457 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? Topaz ? 'IMAGE ACQUISITION' ? 2 ? ? 1 SerialEM 3.8 MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' CTFFIND-4.1 4 1 ? ? RELION 4.0 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot 0.9.8.1 OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? RELION 4.0 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? RELION 4.0 CLASSIFICATION ? 11 1 ? ? RELION 4.0 RECONSTRUCTION ? 12 1 ? ? RELION 4.0 'MODEL REFINEMENT' ? 13 ? 1 ? PHENIX 1.20 # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/Eunice Kennedy Shriver National Institute of Child Health & Human Development (NIH/NICHD)' 'United States' 1DP2HL163810-01 1 'American Heart Association' 'United States' 847236 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 9d23 # _atom_sites.entry_id 9D24 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #