HEADER REPLICATION 08-AUG-24 9D2I TITLE CRYO-EM STRUCTURE OF THE STRAND DISPLACEMENT COMPLEX (III) OF YEAST TITLE 2 MITOCHONDRIAL DNA POLYMERASE GAMMA (MIP1) WITH DOWNSTREAM DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE GAMMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MITOCHONDRIAL DNA POLYMERASE CATALYTIC SUBUNIT; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PRIMER DNA; COMPND 9 CHAIN: P; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: TEMPLATE DNA; COMPND 13 CHAIN: T; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: NON-TEMPLATE DNA; COMPND 17 CHAIN: N; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: MIP1, YOR330C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630; SOURCE 17 MOL_ID: 4; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 20 ORGANISM_TAXID: 32630 KEYWDS MITOCHONDRIAL DNA POLYMERASE GAMMA, STRAND DISPLACEMENT COMPLEX, KEYWDS 2 MIP1, REPLICATION, HELICASE INDEPENDENT DNA POLYMERASE, TRANSFERASE- KEYWDS 3 DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR A.R.NAYAK,V.O.SOKOLOVA,S.SILLAMAA,J.SEDMEN,D.TEMIAKOV REVDAT 2 26-MAR-25 9D2I 1 JRNL REVDAT 1 19-MAR-25 9D2I 0 JRNL AUTH A.R.NAYAK,V.SOKOLOVA,S.SILLAMAA,K.HERBINE,J.SEDMAN, JRNL AUTH 2 D.TEMIAKOV JRNL TITL STRUCTURAL BASIS FOR INTRINSIC STRAND DISPLACEMENT ACTIVITY JRNL TITL 2 OF MITOCHONDRIAL DNA POLYMERASE. JRNL REF NAT COMMUN V. 16 2417 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 40069189 JRNL DOI 10.1038/S41467-025-57594-Z REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.960 REMARK 3 NUMBER OF PARTICLES : 131602 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9D2I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1000287110. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CRYO-EM MAP OF THE STRAND REMARK 245 DISPLACEMENT COMPLEX (III) OF REMARK 245 YEAST MITOCHONDRIAL DNA REMARK 245 POLYMERASE GAMMA (MIP1) REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.57 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.90 REMARK 245 SAMPLE DETAILS : TERNARY COMPLEX OF WILD TYPE REMARK 245 YEAST MITOCHONDRIAL DNA POLYMERASE GAMMA (MIP1), A DNA CONSTRUCT REMARK 245 WITH PRIMER-TEMPLATE AND A DOWNSTREAM NON-TEMPLATE STRAND, AND REMARK 245 AN INCOMING NUCLEOTIDE, DATP. REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 14819 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 28 REMARK 465 ALA A 29 REMARK 465 SER A 30 REMARK 465 THR A 31 REMARK 465 LYS A 32 REMARK 465 LYS A 33 REMARK 465 ASN A 34 REMARK 465 SER A 1045 REMARK 465 LYS A 1046 REMARK 465 GLU A 1047 REMARK 465 TYR A 1048 REMARK 465 ALA A 1049 REMARK 465 ARG A 1050 REMARK 465 ASP A 1051 REMARK 465 GLY A 1052 REMARK 465 ASN A 1053 REMARK 465 THR A 1054 REMARK 465 ALA A 1055 REMARK 465 GLU A 1056 REMARK 465 TYR A 1057 REMARK 465 SER A 1058 REMARK 465 LEU A 1059 REMARK 465 LEU A 1060 REMARK 465 ASP A 1061 REMARK 465 TYR A 1062 REMARK 465 ILE A 1063 REMARK 465 LYS A 1064 REMARK 465 ASP A 1065 REMARK 465 VAL A 1066 REMARK 465 GLU A 1067 REMARK 465 LYS A 1068 REMARK 465 GLY A 1069 REMARK 465 LYS A 1070 REMARK 465 ARG A 1071 REMARK 465 THR A 1072 REMARK 465 LYS A 1073 REMARK 465 VAL A 1074 REMARK 465 ARG A 1075 REMARK 465 ILE A 1076 REMARK 465 MET A 1077 REMARK 465 GLY A 1078 REMARK 465 SER A 1079 REMARK 465 ASN A 1080 REMARK 465 PHE A 1081 REMARK 465 LEU A 1082 REMARK 465 ASP A 1083 REMARK 465 GLY A 1084 REMARK 465 THR A 1085 REMARK 465 LYS A 1086 REMARK 465 ASN A 1087 REMARK 465 ALA A 1088 REMARK 465 LYS A 1089 REMARK 465 ALA A 1090 REMARK 465 ASP A 1091 REMARK 465 GLN A 1092 REMARK 465 ARG A 1093 REMARK 465 ILE A 1094 REMARK 465 ARG A 1095 REMARK 465 LEU A 1096 REMARK 465 PRO A 1097 REMARK 465 VAL A 1098 REMARK 465 ASN A 1099 REMARK 465 MET A 1100 REMARK 465 PRO A 1101 REMARK 465 ASP A 1102 REMARK 465 TYR A 1103 REMARK 465 PRO A 1104 REMARK 465 THR A 1105 REMARK 465 LEU A 1106 REMARK 465 HIS A 1107 REMARK 465 LYS A 1108 REMARK 465 ILE A 1109 REMARK 465 ALA A 1110 REMARK 465 ASN A 1111 REMARK 465 ASP A 1112 REMARK 465 SER A 1113 REMARK 465 ALA A 1114 REMARK 465 ILE A 1115 REMARK 465 PRO A 1116 REMARK 465 GLU A 1117 REMARK 465 LYS A 1118 REMARK 465 GLN A 1119 REMARK 465 LEU A 1120 REMARK 465 LEU A 1121 REMARK 465 GLU A 1122 REMARK 465 ASN A 1123 REMARK 465 ARG A 1124 REMARK 465 ARG A 1125 REMARK 465 LYS A 1126 REMARK 465 LYS A 1127 REMARK 465 GLU A 1128 REMARK 465 ASN A 1129 REMARK 465 ARG A 1130 REMARK 465 ILE A 1131 REMARK 465 ASP A 1132 REMARK 465 ASP A 1133 REMARK 465 GLU A 1134 REMARK 465 ASN A 1135 REMARK 465 LYS A 1136 REMARK 465 LYS A 1137 REMARK 465 LYS A 1138 REMARK 465 LEU A 1139 REMARK 465 THR A 1140 REMARK 465 ARG A 1141 REMARK 465 LYS A 1142 REMARK 465 LYS A 1143 REMARK 465 ASN A 1144 REMARK 465 THR A 1145 REMARK 465 THR A 1146 REMARK 465 PRO A 1147 REMARK 465 MET A 1148 REMARK 465 GLU A 1149 REMARK 465 ARG A 1150 REMARK 465 LYS A 1151 REMARK 465 TYR A 1152 REMARK 465 LYS A 1153 REMARK 465 ARG A 1154 REMARK 465 VAL A 1155 REMARK 465 TYR A 1156 REMARK 465 GLY A 1157 REMARK 465 GLY A 1158 REMARK 465 ARG A 1159 REMARK 465 LYS A 1160 REMARK 465 ALA A 1161 REMARK 465 PHE A 1162 REMARK 465 GLU A 1163 REMARK 465 ALA A 1164 REMARK 465 PHE A 1165 REMARK 465 TYR A 1166 REMARK 465 GLU A 1167 REMARK 465 CYS A 1168 REMARK 465 ALA A 1169 REMARK 465 ASN A 1170 REMARK 465 LYS A 1171 REMARK 465 PRO A 1172 REMARK 465 LEU A 1173 REMARK 465 ASP A 1174 REMARK 465 TYR A 1175 REMARK 465 THR A 1176 REMARK 465 LEU A 1177 REMARK 465 GLU A 1178 REMARK 465 THR A 1179 REMARK 465 GLU A 1180 REMARK 465 LYS A 1181 REMARK 465 GLN A 1182 REMARK 465 PHE A 1183 REMARK 465 PHE A 1184 REMARK 465 ASN A 1185 REMARK 465 ILE A 1186 REMARK 465 PRO A 1187 REMARK 465 ILE A 1188 REMARK 465 ASP A 1189 REMARK 465 GLY A 1190 REMARK 465 VAL A 1191 REMARK 465 ILE A 1192 REMARK 465 ASP A 1193 REMARK 465 ASP A 1194 REMARK 465 VAL A 1195 REMARK 465 LEU A 1196 REMARK 465 ASN A 1197 REMARK 465 ASP A 1198 REMARK 465 LYS A 1199 REMARK 465 SER A 1200 REMARK 465 ASN A 1201 REMARK 465 TYR A 1202 REMARK 465 LYS A 1203 REMARK 465 LYS A 1204 REMARK 465 LYS A 1205 REMARK 465 PRO A 1206 REMARK 465 SER A 1207 REMARK 465 GLN A 1208 REMARK 465 ALA A 1209 REMARK 465 ARG A 1210 REMARK 465 THR A 1211 REMARK 465 ALA A 1212 REMARK 465 SER A 1213 REMARK 465 SER A 1214 REMARK 465 SER A 1215 REMARK 465 PRO A 1216 REMARK 465 ILE A 1217 REMARK 465 ARG A 1218 REMARK 465 LYS A 1219 REMARK 465 THR A 1220 REMARK 465 ALA A 1221 REMARK 465 LYS A 1222 REMARK 465 ALA A 1223 REMARK 465 VAL A 1224 REMARK 465 HIS A 1225 REMARK 465 SER A 1226 REMARK 465 LYS A 1227 REMARK 465 LYS A 1228 REMARK 465 LEU A 1229 REMARK 465 PRO A 1230 REMARK 465 ALA A 1231 REMARK 465 ARG A 1232 REMARK 465 LYS A 1233 REMARK 465 SER A 1234 REMARK 465 SER A 1235 REMARK 465 THR A 1236 REMARK 465 THR A 1237 REMARK 465 ASN A 1238 REMARK 465 ARG A 1239 REMARK 465 ASN A 1240 REMARK 465 LEU A 1241 REMARK 465 VAL A 1242 REMARK 465 GLU A 1243 REMARK 465 LEU A 1244 REMARK 465 GLU A 1245 REMARK 465 ARG A 1246 REMARK 465 ASP A 1247 REMARK 465 ILE A 1248 REMARK 465 THR A 1249 REMARK 465 ILE A 1250 REMARK 465 SER A 1251 REMARK 465 ARG A 1252 REMARK 465 GLU A 1253 REMARK 465 TYR A 1254 REMARK 465 LYS A 1255 REMARK 465 LEU A 1256 REMARK 465 ALA A 1257 REMARK 465 ALA A 1258 REMARK 465 ALA A 1259 REMARK 465 LEU A 1260 REMARK 465 GLU A 1261 REMARK 465 HIS A 1262 REMARK 465 HIS A 1263 REMARK 465 HIS A 1264 REMARK 465 HIS A 1265 REMARK 465 HIS A 1266 REMARK 465 HIS A 1267 REMARK 465 DG P 1 REMARK 465 DA P 2 REMARK 465 DA P 3 REMARK 465 DG P 4 REMARK 465 DA P 5 REMARK 465 DC P 6 REMARK 465 DC T -1 REMARK 465 DG T 0 REMARK 465 DG T 1 REMARK 465 DT T 2 REMARK 465 DC T 3 REMARK 465 DG T 4 REMARK 465 DA T 5 REMARK 465 DG T 6 REMARK 465 DA T 7 REMARK 465 DG T 8 REMARK 465 DG T 35 REMARK 465 DT T 36 REMARK 465 DC T 37 REMARK 465 DT T 38 REMARK 465 DT T 39 REMARK 465 DC T 40 REMARK 465 DT N 1 REMARK 465 DT N 2 REMARK 465 DT N 3 REMARK 465 DT N 4 REMARK 465 DG N 5 REMARK 465 DG N 6 REMARK 465 DT N 7 REMARK 465 DA N 8 REMARK 465 DG N 9 REMARK 465 DC N 16 REMARK 465 DT N 17 REMARK 465 DC N 18 REMARK 465 DG N 19 REMARK 465 DA N 20 REMARK 465 DC N 21 REMARK 465 DC N 22 REMARK 465 DG N 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 35 OG1 CG2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 ASP A 65 CG OD1 OD2 REMARK 470 GLU A 66 CG CD OE1 OE2 REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 ARG A 263 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 GLU A 282 CG CD OE1 OE2 REMARK 470 HIS A 284 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 ILE A 287 CG1 CG2 CD1 REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 ARG A 322 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 450 CG CD CE NZ REMARK 470 LYS A 455 CG CD CE NZ REMARK 470 LEU A 527 CG CD1 CD2 REMARK 470 GLU A 534 CG CD OE1 OE2 REMARK 470 LYS A 629 CG CD CE NZ REMARK 470 LEU A 632 CG CD1 CD2 REMARK 470 ASN A 633 CG OD1 ND2 REMARK 470 ASN A 634 CG OD1 ND2 REMARK 470 GLU A 635 CG CD OE1 OE2 REMARK 470 LYS A 636 CG CD CE NZ REMARK 470 LYS A 842 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3' DG P 23 OP2 2DT P 101 2.18 REMARK 500 NH1 ARG A 446 OP1 DT P 11 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 260 CB - CG - CD2 ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 189 -169.38 -125.97 REMARK 500 PHE A 258 -7.61 74.82 REMARK 500 LYS A 425 71.50 53.74 REMARK 500 LEU A 543 -8.06 76.57 REMARK 500 SER A 571 -1.31 76.62 REMARK 500 LEU A 632 -138.32 52.90 REMARK 500 GLU A 676 34.52 -99.80 REMARK 500 LYS A 802 -134.16 58.52 REMARK 500 HIS A 891 -113.31 54.54 REMARK 500 ASN A 951 56.53 -96.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 265 0.26 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 694 O REMARK 620 2 ASP A 892 OD2 97.8 REMARK 620 3 DTP A1301 O1B 85.1 110.5 REMARK 620 4 DTP A1301 O3B 111.9 149.3 66.2 REMARK 620 5 DTP A1301 O1A 174.6 79.8 100.2 71.2 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9C51 RELATED DB: PDB REMARK 900 RELATED ID: 9C52 RELATED DB: PDB REMARK 900 RELATED ID: 9C53 RELATED DB: PDB REMARK 900 RELATED ID: EMD-46497 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE STRAND DISPLACEMENT COMPLEX (III) OF YEAST REMARK 900 MITOCHONDRIAL DNA POLYMERASE GAMMA (MIP1) WITH DOWNSTREAM DNA DBREF 9D2I A 30 1254 UNP P15801 DPOG_YEAST 30 1254 DBREF 9D2I P 1 23 PDB 9D2I 9D2I 1 23 DBREF 9D2I T -1 40 PDB 9D2I 9D2I -1 40 DBREF 9D2I N 1 23 PDB 9D2I 9D2I 1 23 SEQADV 9D2I MET A 28 UNP P15801 EXPRESSION TAG SEQADV 9D2I ALA A 29 UNP P15801 EXPRESSION TAG SEQADV 9D2I VAL A 222 UNP P15801 ILE 222 CONFLICT SEQADV 9D2I LYS A 357 UNP P15801 GLU 357 CONFLICT SEQADV 9D2I ALA A 420 UNP P15801 VAL 420 CONFLICT SEQADV 9D2I MET A 540 UNP P15801 THR 540 CONFLICT SEQADV 9D2I ASN A 541 UNP P15801 HIS 541 CONFLICT SEQADV 9D2I ASN A 616 UNP P15801 SER 616 CONFLICT SEQADV 9D2I THR A 661 UNP P15801 ALA 661 CONFLICT SEQADV 9D2I PRO A 978 UNP P15801 SER 978 CONFLICT SEQADV 9D2I SER A 986 UNP P15801 ASN 986 CONFLICT SEQADV 9D2I LYS A 1255 UNP P15801 EXPRESSION TAG SEQADV 9D2I LEU A 1256 UNP P15801 EXPRESSION TAG SEQADV 9D2I ALA A 1257 UNP P15801 EXPRESSION TAG SEQADV 9D2I ALA A 1258 UNP P15801 EXPRESSION TAG SEQADV 9D2I ALA A 1259 UNP P15801 EXPRESSION TAG SEQADV 9D2I LEU A 1260 UNP P15801 EXPRESSION TAG SEQADV 9D2I GLU A 1261 UNP P15801 EXPRESSION TAG SEQADV 9D2I HIS A 1262 UNP P15801 EXPRESSION TAG SEQADV 9D2I HIS A 1263 UNP P15801 EXPRESSION TAG SEQADV 9D2I HIS A 1264 UNP P15801 EXPRESSION TAG SEQADV 9D2I HIS A 1265 UNP P15801 EXPRESSION TAG SEQADV 9D2I HIS A 1266 UNP P15801 EXPRESSION TAG SEQADV 9D2I HIS A 1267 UNP P15801 EXPRESSION TAG SEQRES 1 A 1240 MET ALA SER THR LYS LYS ASN THR ALA GLU ALA PRO ARG SEQRES 2 A 1240 ILE ASN PRO VAL GLY ILE GLN TYR LEU GLY GLU SER LEU SEQRES 3 A 1240 GLN ARG GLN VAL PHE GLY SER CYS GLY GLY LYS ASP GLU SEQRES 4 A 1240 VAL GLU GLN SER ASP LYS LEU MET GLU LEU SER LYS LYS SEQRES 5 A 1240 SER LEU LYS ASP HIS GLY LEU TRP GLY LYS LYS THR LEU SEQRES 6 A 1240 ILE THR ASP PRO ILE SER PHE PRO LEU PRO PRO LEU GLN SEQRES 7 A 1240 GLY ARG SER LEU ASP GLU HIS PHE GLN LYS ILE GLY ARG SEQRES 8 A 1240 PHE ASN SER GLU PRO TYR LYS SER PHE CYS GLU ASP LYS SEQRES 9 A 1240 PHE THR GLU MET VAL ALA ARG PRO ALA GLU TRP LEU ARG SEQRES 10 A 1240 LYS PRO GLY TRP VAL LYS TYR VAL PRO GLY MET ALA PRO SEQRES 11 A 1240 VAL GLU VAL ALA TYR PRO ASP GLU GLU LEU VAL VAL PHE SEQRES 12 A 1240 ASP VAL GLU THR LEU TYR ASN VAL SER ASP TYR PRO THR SEQRES 13 A 1240 LEU ALA THR ALA LEU SER SER THR ALA TRP TYR LEU TRP SEQRES 14 A 1240 CYS SER PRO PHE ILE CYS GLY GLY ASP ASP PRO ALA ALA SEQRES 15 A 1240 LEU ILE PRO LEU ASN THR LEU ASN LYS GLU GLN VAL VAL SEQRES 16 A 1240 ILE GLY HIS ASN VAL ALA TYR ASP ARG ALA ARG VAL LEU SEQRES 17 A 1240 GLU GLU TYR ASN PHE ARG ASP SER LYS ALA PHE PHE LEU SEQRES 18 A 1240 ASP THR GLN SER LEU HIS ILE ALA SER PHE GLY LEU CYS SEQRES 19 A 1240 SER ARG GLN ARG PRO MET PHE MET LYS ASN ASN LYS LYS SEQRES 20 A 1240 LYS GLU ALA GLU VAL GLU SER GLU VAL HIS PRO GLU ILE SEQRES 21 A 1240 SER ILE GLU ASP TYR ASP ASP PRO TRP LEU ASN VAL SER SEQRES 22 A 1240 ALA LEU ASN SER LEU LYS ASP VAL ALA LYS PHE HIS CYS SEQRES 23 A 1240 LYS ILE ASP LEU ASP LYS THR ASP ARG ASP PHE PHE ALA SEQRES 24 A 1240 SER THR ASP LYS SER THR ILE ILE GLU ASN PHE GLN LYS SEQRES 25 A 1240 LEU VAL ASN TYR CYS ALA THR ASP VAL THR ALA THR SER SEQRES 26 A 1240 GLN VAL PHE ASP LYS ILE PHE PRO VAL PHE LEU LYS LYS SEQRES 27 A 1240 CYS PRO HIS PRO VAL SER PHE ALA GLY LEU LYS SER LEU SEQRES 28 A 1240 SER LYS CYS ILE LEU PRO THR LYS LEU ASN ASP TRP ASN SEQRES 29 A 1240 ASP TYR LEU ASN SER SER GLU SER LEU TYR GLN GLN SER SEQRES 30 A 1240 LYS VAL GLN ILE GLU SER LYS ILE VAL GLN ILE ILE LYS SEQRES 31 A 1240 ASP ILE ALA LEU LEU LYS ASP LYS PRO ASP PHE TYR LEU SEQRES 32 A 1240 LYS ASP PRO TRP LEU SER GLN LEU ASP TRP THR THR LYS SEQRES 33 A 1240 PRO LEU ARG LEU THR LYS LYS GLY VAL PRO ALA LYS CYS SEQRES 34 A 1240 GLN LYS LEU PRO GLY PHE PRO GLU TRP TYR ARG GLN LEU SEQRES 35 A 1240 PHE PRO SER LYS ASP THR VAL GLU PRO LYS ILE THR ILE SEQRES 36 A 1240 LYS SER ARG ILE ILE PRO ILE LEU PHE LYS LEU SER TRP SEQRES 37 A 1240 GLU ASN SER PRO VAL ILE TRP SER LYS GLU SER GLY TRP SEQRES 38 A 1240 CYS PHE ASN VAL PRO HIS GLU GLN VAL GLU THR TYR LYS SEQRES 39 A 1240 ALA LYS ASN TYR VAL LEU ALA ASP SER VAL SER GLN GLU SEQRES 40 A 1240 GLU GLU GLU ILE ARG MET ASN ASN LEU GLY LEU GLN CYS SEQRES 41 A 1240 THR GLY VAL LEU PHE LYS VAL PRO HIS PRO ASN GLY PRO SEQRES 42 A 1240 THR PHE ASN CYS THR ASN LEU LEU THR LYS SER TYR ASN SEQRES 43 A 1240 HIS PHE PHE GLU LYS GLY VAL LEU LYS SER GLU SER GLU SEQRES 44 A 1240 LEU ALA HIS GLN ALA LEU GLN ILE ASN SER SER GLY SER SEQRES 45 A 1240 TYR TRP MET SER ALA ARG GLU ARG ILE GLN SER GLN PHE SEQRES 46 A 1240 VAL VAL PRO ASN CYS LYS PHE PRO ASN GLU PHE GLN SER SEQRES 47 A 1240 LEU SER ALA LYS SER SER LEU ASN ASN GLU LYS THR ASN SEQRES 48 A 1240 ASP LEU ALA ILE ILE ILE PRO LYS ILE VAL PRO MET GLY SEQRES 49 A 1240 THR ILE THR ARG ARG ALA VAL GLU ASN THR TRP LEU THR SEQRES 50 A 1240 ALA SER ASN ALA LYS ALA ASN ARG ILE GLY SER GLU LEU SEQRES 51 A 1240 LYS THR GLN VAL LYS ALA PRO PRO GLY TYR CYS PHE VAL SEQRES 52 A 1240 GLY ALA ASP VAL ASP SER GLU GLU LEU TRP ILE ALA SER SEQRES 53 A 1240 LEU VAL GLY ASP SER ILE PHE ASN VAL HIS GLY GLY THR SEQRES 54 A 1240 ALA ILE GLY TRP MET CYS LEU GLU GLY THR LYS ASN GLU SEQRES 55 A 1240 GLY THR ASP LEU HIS THR LYS THR ALA GLN ILE LEU GLY SEQRES 56 A 1240 CYS SER ARG ASN GLU ALA LYS ILE PHE ASN TYR GLY ARG SEQRES 57 A 1240 ILE TYR GLY ALA GLY ALA LYS PHE ALA SER GLN LEU LEU SEQRES 58 A 1240 LYS ARG PHE ASN PRO SER LEU THR ASP GLU GLU THR LYS SEQRES 59 A 1240 LYS ILE ALA ASN LYS LEU TYR GLU ASN THR LYS GLY LYS SEQRES 60 A 1240 THR LYS ARG SER LYS LEU PHE LYS LYS PHE TRP TYR GLY SEQRES 61 A 1240 GLY SER GLU SER ILE LEU PHE ASN LYS LEU GLU SER ILE SEQRES 62 A 1240 ALA GLU GLN GLU THR PRO LYS THR PRO VAL LEU GLY CYS SEQRES 63 A 1240 GLY ILE THR TYR SER LEU MET LYS LYS ASN LEU ARG ALA SEQRES 64 A 1240 ASN SER PHE LEU PRO SER ARG ILE ASN TRP ALA ILE GLN SEQRES 65 A 1240 SER SER GLY VAL ASP TYR LEU HIS LEU LEU CYS CYS SER SEQRES 66 A 1240 MET GLU TYR ILE ILE LYS LYS TYR ASN LEU GLU ALA ARG SEQRES 67 A 1240 LEU CYS ILE SER ILE HIS ASP GLU ILE ARG PHE LEU VAL SEQRES 68 A 1240 SER GLU LYS ASP LYS TYR ARG ALA ALA MET ALA LEU GLN SEQRES 69 A 1240 ILE SER ASN ILE TRP THR ARG ALA MET PHE CYS GLN GLN SEQRES 70 A 1240 MET GLY ILE ASN GLU LEU PRO GLN ASN CYS ALA PHE PHE SEQRES 71 A 1240 SER GLN VAL ASP ILE ASP SER VAL ILE ARG LYS GLU VAL SEQRES 72 A 1240 ASN MET ASP CYS ILE THR PRO SER ASN LYS THR ALA ILE SEQRES 73 A 1240 PRO HIS GLY GLU ALA LEU ASP ILE ASN GLN LEU LEU ASP SEQRES 74 A 1240 LYS PRO ASN SER LYS LEU GLY LYS PRO SER LEU ASP ILE SEQRES 75 A 1240 ASP SER LYS VAL SER GLN TYR ALA TYR ASN TYR ARG GLU SEQRES 76 A 1240 PRO VAL PHE GLU GLU TYR ASN LYS SER TYR THR PRO GLU SEQRES 77 A 1240 PHE LEU LYS TYR PHE LEU ALA MET GLN VAL GLN SER ASP SEQRES 78 A 1240 LYS ARG ASP VAL ASN ARG LEU GLU ASP GLU TYR LEU ARG SEQRES 79 A 1240 GLU CYS THR SER LYS GLU TYR ALA ARG ASP GLY ASN THR SEQRES 80 A 1240 ALA GLU TYR SER LEU LEU ASP TYR ILE LYS ASP VAL GLU SEQRES 81 A 1240 LYS GLY LYS ARG THR LYS VAL ARG ILE MET GLY SER ASN SEQRES 82 A 1240 PHE LEU ASP GLY THR LYS ASN ALA LYS ALA ASP GLN ARG SEQRES 83 A 1240 ILE ARG LEU PRO VAL ASN MET PRO ASP TYR PRO THR LEU SEQRES 84 A 1240 HIS LYS ILE ALA ASN ASP SER ALA ILE PRO GLU LYS GLN SEQRES 85 A 1240 LEU LEU GLU ASN ARG ARG LYS LYS GLU ASN ARG ILE ASP SEQRES 86 A 1240 ASP GLU ASN LYS LYS LYS LEU THR ARG LYS LYS ASN THR SEQRES 87 A 1240 THR PRO MET GLU ARG LYS TYR LYS ARG VAL TYR GLY GLY SEQRES 88 A 1240 ARG LYS ALA PHE GLU ALA PHE TYR GLU CYS ALA ASN LYS SEQRES 89 A 1240 PRO LEU ASP TYR THR LEU GLU THR GLU LYS GLN PHE PHE SEQRES 90 A 1240 ASN ILE PRO ILE ASP GLY VAL ILE ASP ASP VAL LEU ASN SEQRES 91 A 1240 ASP LYS SER ASN TYR LYS LYS LYS PRO SER GLN ALA ARG SEQRES 92 A 1240 THR ALA SER SER SER PRO ILE ARG LYS THR ALA LYS ALA SEQRES 93 A 1240 VAL HIS SER LYS LYS LEU PRO ALA ARG LYS SER SER THR SEQRES 94 A 1240 THR ASN ARG ASN LEU VAL GLU LEU GLU ARG ASP ILE THR SEQRES 95 A 1240 ILE SER ARG GLU TYR LYS LEU ALA ALA ALA LEU GLU HIS SEQRES 96 A 1240 HIS HIS HIS HIS HIS SEQRES 1 P 23 DG DA DA DG DA DC DA DG DT DC DT DG DC SEQRES 2 P 23 DG DG DC DG DC DG DC DG DG DG SEQRES 1 T 42 DC DG DG DT DC DG DA DG DA DG DT DC DA SEQRES 2 T 42 DC DG DA DC DT DA DC DC DC DG DC DG DC SEQRES 3 T 42 DG DC DC DG DC DA DG DA DC DT DG DT DC SEQRES 4 T 42 DT DT DC SEQRES 1 N 23 DT DT DT DT DG DG DT DA DG DT DC DG DT SEQRES 2 N 23 DG DA DC DT DC DG DA DC DC DG HET DTP A1301 30 HET MG A1302 1 HET 2DT P 101 19 HETNAM DTP 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM 2DT 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE HETSYN 2DT 2',3'-DIDEOXYTHYMIDINE-5'-MONOPHOSPHATE FORMUL 5 DTP C10 H16 N5 O12 P3 FORMUL 6 MG MG 2+ FORMUL 7 2DT C10 H15 N2 O7 P HELIX 1 AA1 GLY A 50 GLY A 59 1 10 HELIX 2 AA2 GLY A 63 HIS A 84 1 22 HELIX 3 AA3 SER A 108 GLU A 129 1 22 HELIX 4 AA4 SER A 198 GLY A 203 1 6 HELIX 5 AA5 ASN A 226 ALA A 232 1 7 HELIX 6 AA6 ARG A 233 TYR A 238 5 6 HELIX 7 AA7 ASP A 249 SER A 257 1 9 HELIX 8 AA8 MET A 267 SER A 281 1 15 HELIX 9 AA9 ASP A 294 VAL A 299 5 6 HELIX 10 AB1 SER A 304 CYS A 313 1 10 HELIX 11 AB2 THR A 320 SER A 327 5 8 HELIX 12 AB3 LYS A 330 GLU A 335 1 6 HELIX 13 AB4 ASN A 336 CYS A 366 1 31 HELIX 14 AB5 HIS A 368 LYS A 380 1 13 HELIX 15 AB6 LYS A 386 LEU A 422 1 37 HELIX 16 AB7 PRO A 426 ASP A 432 1 7 HELIX 17 AB8 ASP A 432 LEU A 438 1 7 HELIX 18 AB9 PRO A 463 PHE A 470 1 8 HELIX 19 AC1 ILE A 486 PHE A 491 1 6 HELIX 20 AC2 GLN A 516 LYS A 523 1 8 HELIX 21 AC3 ASP A 529 ASN A 542 1 14 HELIX 22 AC4 LEU A 543 LEU A 545 5 3 HELIX 23 AC5 GLU A 586 ILE A 594 1 9 HELIX 24 AC6 GLY A 598 SER A 610 1 13 HELIX 25 AC7 GLU A 676 VAL A 681 5 6 HELIX 26 AC8 SER A 696 SER A 708 1 13 HELIX 27 AC9 THR A 716 MET A 721 1 6 HELIX 28 AD1 ASP A 732 GLY A 742 1 11 HELIX 29 AD2 SER A 744 GLY A 758 1 15 HELIX 30 AD3 GLY A 760 ASN A 772 1 13 HELIX 31 AD4 THR A 776 LYS A 792 1 17 HELIX 32 AD5 GLU A 810 GLU A 822 1 13 HELIX 33 AD6 PHE A 849 ASN A 881 1 33 HELIX 34 AD7 ASP A 902 GLY A 926 1 25 HELIX 35 AD8 ASP A 970 LYS A 977 1 8 HELIX 36 AD9 SER A 986 GLN A 995 1 10 HELIX 37 AE1 PRO A 1003 LYS A 1010 1 8 HELIX 38 AE2 THR A 1013 GLN A 1026 1 14 HELIX 39 AE3 ASP A 1028 THR A 1044 1 17 SHEET 1 AA1 7 VAL A 158 VAL A 160 0 SHEET 2 AA1 7 GLY A 147 TYR A 151 -1 N LYS A 150 O VAL A 158 SHEET 3 AA1 7 TRP A 193 CYS A 197 -1 O TRP A 193 N TYR A 151 SHEET 4 AA1 7 PRO A 182 LEU A 188 -1 N ALA A 185 O TRP A 196 SHEET 5 AA1 7 LEU A 167 THR A 174 -1 N GLU A 173 O THR A 183 SHEET 6 AA1 7 GLN A 220 ILE A 223 1 O ILE A 223 N VAL A 168 SHEET 7 AA1 7 ALA A 245 LEU A 248 1 O PHE A 246 N VAL A 222 SHEET 1 AA2 3 LEU A 383 THR A 385 0 SHEET 2 AA2 3 ALA A 641 ILE A 643 -1 O ILE A 643 N LEU A 383 SHEET 3 AA2 3 VAL A 614 PRO A 615 -1 N VAL A 614 O ILE A 642 SHEET 1 AA3 2 LEU A 493 TRP A 495 0 SHEET 2 AA3 2 LEU A 581 SER A 583 -1 O LYS A 582 N SER A 494 SHEET 1 AA4 3 VAL A 500 TRP A 502 0 SHEET 2 AA4 3 TRP A 508 PRO A 513 -1 O CYS A 509 N ILE A 501 SHEET 3 AA4 3 GLY A 549 LYS A 553 -1 O VAL A 550 N VAL A 512 SHEET 1 AA5 5 ALA A 884 ILE A 890 0 SHEET 2 AA5 5 GLU A 893 SER A 899 -1 O ARG A 895 N ILE A 888 SHEET 3 AA5 5 TYR A 687 ALA A 692 -1 N ALA A 692 O ILE A 894 SHEET 4 AA5 5 VAL A 940 ASP A 943 -1 O ASP A 943 N PHE A 689 SHEET 5 AA5 5 GLU A 967 LEU A 969 -1 O GLU A 967 N ILE A 942 SHEET 1 AA6 2 LYS A 794 SER A 798 0 SHEET 2 AA6 2 LYS A 802 TYR A 806 -1 O LYS A 802 N SER A 798 LINK O3' DG P 23 P 2DT P 101 1555 1555 1.56 LINK O VAL A 694 MG MG A1302 1555 1555 2.68 LINK OD2 ASP A 892 MG MG A1302 1555 1555 2.46 LINK O1B DTP A1301 MG MG A1302 1555 1555 2.14 LINK O3B DTP A1301 MG MG A1302 1555 1555 2.62 LINK O1A DTP A1301 MG MG A1302 1555 1555 2.32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 8001 THR A1044 TER 8356 DG P 23 TER 8882 DT T 34 TER 9007 DA N 15 HETATM 9008 PG DTP A1301 122.596 115.647 116.269 1.00 20.00 P HETATM 9009 O1G DTP A1301 121.403 115.128 117.021 1.00 20.00 O HETATM 9010 O2G DTP A1301 122.141 116.712 115.283 1.00 20.00 O HETATM 9011 O3G DTP A1301 123.243 114.513 115.517 1.00 20.00 O HETATM 9012 PB DTP A1301 125.372 116.203 117.153 1.00 20.00 P HETATM 9013 O1B DTP A1301 125.833 117.103 116.021 1.00 20.00 O HETATM 9014 O2B DTP A1301 125.823 114.768 116.825 1.00 20.00 O HETATM 9015 O3B DTP A1301 123.701 116.280 117.316 1.00 20.00 O HETATM 9016 PA DTP A1301 125.330 118.007 119.506 1.00 20.00 P HETATM 9017 O1A DTP A1301 124.363 118.769 118.620 1.00 20.00 O HETATM 9018 O2A DTP A1301 124.545 117.489 120.720 1.00 20.00 O HETATM 9019 O3A DTP A1301 126.018 116.751 118.622 1.00 20.00 O HETATM 9020 O5' DTP A1301 126.589 119.031 119.918 1.00 20.00 O HETATM 9021 C5' DTP A1301 127.404 119.397 118.845 1.00 20.00 C HETATM 9022 C4' DTP A1301 128.856 118.989 119.040 1.00 20.00 C HETATM 9023 O4' DTP A1301 129.495 119.566 120.390 1.00 20.00 O HETATM 9024 C3' DTP A1301 128.993 117.665 119.080 1.00 20.00 C HETATM 9025 O3' DTP A1301 129.178 117.167 117.692 1.00 20.00 O HETATM 9026 C2' DTP A1301 130.223 117.449 119.964 1.00 20.00 C HETATM 9027 C1' DTP A1301 130.146 118.594 120.998 1.00 20.00 C HETATM 9028 N9 DTP A1301 129.324 118.112 122.164 1.00 20.00 N HETATM 9029 C8 DTP A1301 128.046 118.166 122.557 1.00 20.00 C HETATM 9030 N7 DTP A1301 127.956 117.533 123.709 1.00 20.00 N HETATM 9031 C5 DTP A1301 129.165 117.080 124.046 1.00 20.00 C HETATM 9032 C6 DTP A1301 129.641 116.356 125.143 1.00 20.00 C HETATM 9033 N6 DTP A1301 129.074 115.756 126.423 1.00 20.00 N HETATM 9034 N1 DTP A1301 130.920 116.042 125.209 1.00 20.00 N HETATM 9035 C2 DTP A1301 131.793 116.410 124.223 1.00 20.00 C HETATM 9036 N3 DTP A1301 131.321 117.108 123.172 1.00 20.00 N HETATM 9037 C4 DTP A1301 130.016 117.448 123.069 1.00 20.00 C HETATM 9038 MG MG A1302 124.347 118.609 116.306 1.00 30.00 MG HETATM 9039 P 2DT P 101 122.870 123.551 123.891 1.00 19.29 P HETATM 9040 OP1 2DT P 101 121.828 123.903 122.863 1.00 18.90 O HETATM 9041 OP2 2DT P 101 122.403 122.367 124.702 1.00 18.13 O HETATM 9042 O5' 2DT P 101 124.367 123.349 123.205 1.00 18.26 O HETATM 9043 N1 2DT P 101 127.968 122.298 123.837 1.00 15.75 N HETATM 9044 C6 2DT P 101 126.785 122.054 124.627 1.00 15.40 C HETATM 9045 C2 2DT P 101 129.261 121.692 124.245 1.00 15.71 C HETATM 9046 O2 2DT P 101 130.236 121.888 123.602 1.00 15.21 O HETATM 9047 N3 2DT P 101 129.327 120.842 125.470 1.00 16.25 N HETATM 9048 C4 2DT P 101 128.129 120.604 126.260 1.00 16.09 C HETATM 9049 O4 2DT P 101 128.168 119.931 127.234 1.00 16.91 O HETATM 9050 C5 2DT P 101 126.839 121.211 125.842 1.00 15.85 C HETATM 9051 C5M 2DT P 101 125.571 120.972 126.657 1.00 15.15 C HETATM 9052 C2' 2DT P 101 127.443 122.199 121.400 1.00 15.75 C HETATM 9053 C5' 2DT P 101 124.658 124.078 122.049 1.00 17.35 C HETATM 9054 C4' 2DT P 101 125.989 123.861 121.626 1.00 16.78 C HETATM 9055 O4' 2DT P 101 126.997 124.045 122.793 1.00 16.33 O HETATM 9056 C1' 2DT P 101 127.890 123.128 122.649 1.00 15.92 C HETATM 9057 C3' 2DT P 101 126.175 122.411 121.217 1.00 16.10 C CONECT 5192 9038 CONECT 6756 9038 CONECT 8342 9039 CONECT 9008 9009 9010 9011 9015 CONECT 9009 9008 CONECT 9010 9008 CONECT 9011 9008 CONECT 9012 9013 9014 9015 9019 CONECT 9013 9012 9038 CONECT 9014 9012 CONECT 9015 9008 9012 9038 CONECT 9016 9017 9018 9019 9020 CONECT 9017 9016 9038 CONECT 9018 9016 CONECT 9019 9012 9016 CONECT 9020 9016 9021 CONECT 9021 9020 9022 CONECT 9022 9021 9023 9024 CONECT 9023 9022 9027 CONECT 9024 9022 9025 9026 CONECT 9025 9024 CONECT 9026 9024 9027 CONECT 9027 9023 9026 9028 CONECT 9028 9027 9029 9037 CONECT 9029 9028 9030 CONECT 9030 9029 9031 CONECT 9031 9030 9032 9037 CONECT 9032 9031 9033 9034 CONECT 9033 9032 CONECT 9034 9032 9035 CONECT 9035 9034 9036 CONECT 9036 9035 9037 CONECT 9037 9028 9031 9036 CONECT 9038 5192 6756 9013 9015 CONECT 9038 9017 CONECT 9039 8342 9040 9041 9042 CONECT 9040 9039 CONECT 9041 9039 CONECT 9042 9039 9053 CONECT 9043 9044 9045 9056 CONECT 9044 9043 9050 CONECT 9045 9043 9046 9047 CONECT 9046 9045 CONECT 9047 9045 9048 CONECT 9048 9047 9049 9050 CONECT 9049 9048 CONECT 9050 9044 9048 9051 CONECT 9051 9050 CONECT 9052 9056 9057 CONECT 9053 9042 9054 CONECT 9054 9053 9055 9057 CONECT 9055 9054 9056 CONECT 9056 9043 9052 9055 CONECT 9057 9052 9054 MASTER 500 0 3 39 22 0 0 6 9053 4 54 104 END