data_9D5C # _entry.id 9D5C # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.402 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9D5C pdb_00009d5c 10.2210/pdb9d5c/pdb WWPDB D_1000287340 ? ? EMDB EMD-29980 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-03-12 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9D5C _pdbx_database_status.recvd_initial_deposition_date 2024-08-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB . EMD-29980 'associated EM volume' PDB . 8GF7 unspecified # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 3 lorena.saelicesgomez@utsouthwestern.edu Lorena Saelices ? 'principal investigator/group leader' 0000-0002-1904-2150 4 mattherp@usc.edu Matthew Pratt R. 'principal investigator/group leader' 0000-0003-3205-5615 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Balana, J.A.' 1 0000-0002-1417-9887 'Nguyen, A.B.' 2 0000-0001-7055-8809 'Sawaya, M.' 3 0000-0003-0874-9043 'Murzin, A.G.' 4 ? 'Saelices, L.' 5 0000-0002-1904-2150 'Pratt, R.M.' 6 0000-0003-3205-5615 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nat.Chem.Biol. _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 20 _citation.language ? _citation.page_first 646 _citation.page_last 655 _citation.title 'O-GlcNAc forces an alpha-synuclein amyloid strain with notably diminished seeding and pathology.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-024-01551-2 _citation.pdbx_database_id_PubMed 38347213 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Balana, A.T.' 1 ? primary 'Mahul-Mellier, A.L.' 2 ? primary 'Nguyen, B.A.' 3 ? primary 'Horvath, M.' 4 ? primary 'Javed, A.' 5 ? primary 'Hard, E.R.' 6 ? primary 'Jasiqi, Y.' 7 ? primary 'Singh, P.' 8 ? primary 'Afrin, S.' 9 ? primary 'Pedretti, R.' 10 ? primary 'Singh, V.' 11 ? primary 'Lee, V.M.' 12 ? primary 'Luk, K.C.' 13 ? primary 'Saelices, L.' 14 ? primary 'Lashuel, H.A.' 15 ? primary 'Pratt, M.R.' 16 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn Alpha-synuclein 9533.971 6 ? ? ? ? 2 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 6 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Non-A beta component of AD amyloid,Non-A4 component of amyloid precursor,NACP' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQK TVEGAGSIAAATGFVK ; _entity_poly.pdbx_seq_one_letter_code_can ;MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQK TVEGAGSIAAATGFVK ; _entity_poly.pdbx_strand_id A,G,C,H,B,F _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 VAL n 1 4 PHE n 1 5 MET n 1 6 LYS n 1 7 GLY n 1 8 LEU n 1 9 SER n 1 10 LYS n 1 11 ALA n 1 12 LYS n 1 13 GLU n 1 14 GLY n 1 15 VAL n 1 16 VAL n 1 17 ALA n 1 18 ALA n 1 19 ALA n 1 20 GLU n 1 21 LYS n 1 22 THR n 1 23 LYS n 1 24 GLN n 1 25 GLY n 1 26 VAL n 1 27 ALA n 1 28 GLU n 1 29 ALA n 1 30 ALA n 1 31 GLY n 1 32 LYS n 1 33 THR n 1 34 LYS n 1 35 GLU n 1 36 GLY n 1 37 VAL n 1 38 LEU n 1 39 TYR n 1 40 VAL n 1 41 GLY n 1 42 SER n 1 43 LYS n 1 44 THR n 1 45 LYS n 1 46 GLU n 1 47 GLY n 1 48 VAL n 1 49 VAL n 1 50 HIS n 1 51 GLY n 1 52 VAL n 1 53 ALA n 1 54 THR n 1 55 VAL n 1 56 ALA n 1 57 GLU n 1 58 LYS n 1 59 THR n 1 60 LYS n 1 61 GLU n 1 62 GLN n 1 63 VAL n 1 64 THR n 1 65 ASN n 1 66 VAL n 1 67 GLY n 1 68 GLY n 1 69 ALA n 1 70 VAL n 1 71 VAL n 1 72 THR n 1 73 GLY n 1 74 VAL n 1 75 THR n 1 76 ALA n 1 77 VAL n 1 78 ALA n 1 79 GLN n 1 80 LYS n 1 81 THR n 1 82 VAL n 1 83 GLU n 1 84 GLY n 1 85 ALA n 1 86 GLY n 1 87 SER n 1 88 ILE n 1 89 ALA n 1 90 ALA n 1 91 ALA n 1 92 THR n 1 93 GLY n 1 94 PHE n 1 95 VAL n 1 96 LYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 96 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ASP 2 2 2 ASP ASP A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 MET 5 5 5 MET MET A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 GLN 24 24 24 GLN GLN A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 HIS 50 50 50 HIS HIS A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 GLN 79 79 79 GLN GLN A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 PHE 94 94 94 PHE PHE A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 LYS 96 96 96 LYS LYS A . n B 1 1 MET 1 1 1 MET MET G . n B 1 2 ASP 2 2 2 ASP ASP G . n B 1 3 VAL 3 3 3 VAL VAL G . n B 1 4 PHE 4 4 4 PHE PHE G . n B 1 5 MET 5 5 5 MET MET G . n B 1 6 LYS 6 6 6 LYS LYS G . n B 1 7 GLY 7 7 7 GLY GLY G . n B 1 8 LEU 8 8 8 LEU LEU G . n B 1 9 SER 9 9 9 SER SER G . n B 1 10 LYS 10 10 10 LYS LYS G . n B 1 11 ALA 11 11 11 ALA ALA G . n B 1 12 LYS 12 12 12 LYS LYS G . n B 1 13 GLU 13 13 13 GLU GLU G . n B 1 14 GLY 14 14 14 GLY GLY G . n B 1 15 VAL 15 15 15 VAL VAL G . n B 1 16 VAL 16 16 16 VAL VAL G . n B 1 17 ALA 17 17 17 ALA ALA G . n B 1 18 ALA 18 18 18 ALA ALA G . n B 1 19 ALA 19 19 19 ALA ALA G . n B 1 20 GLU 20 20 20 GLU GLU G . n B 1 21 LYS 21 21 21 LYS LYS G . n B 1 22 THR 22 22 22 THR THR G . n B 1 23 LYS 23 23 23 LYS LYS G . n B 1 24 GLN 24 24 24 GLN GLN G . n B 1 25 GLY 25 25 25 GLY GLY G . n B 1 26 VAL 26 26 26 VAL VAL G . n B 1 27 ALA 27 27 27 ALA ALA G . n B 1 28 GLU 28 28 28 GLU GLU G . n B 1 29 ALA 29 29 29 ALA ALA G . n B 1 30 ALA 30 30 30 ALA ALA G . n B 1 31 GLY 31 31 31 GLY GLY G . n B 1 32 LYS 32 32 32 LYS LYS G . n B 1 33 THR 33 33 33 THR THR G . n B 1 34 LYS 34 34 34 LYS LYS G . n B 1 35 GLU 35 35 35 GLU GLU G . n B 1 36 GLY 36 36 36 GLY GLY G . n B 1 37 VAL 37 37 37 VAL VAL G . n B 1 38 LEU 38 38 38 LEU LEU G . n B 1 39 TYR 39 39 39 TYR TYR G . n B 1 40 VAL 40 40 40 VAL VAL G . n B 1 41 GLY 41 41 41 GLY GLY G . n B 1 42 SER 42 42 42 SER SER G . n B 1 43 LYS 43 43 43 LYS LYS G . n B 1 44 THR 44 44 44 THR THR G . n B 1 45 LYS 45 45 45 LYS LYS G . n B 1 46 GLU 46 46 46 GLU GLU G . n B 1 47 GLY 47 47 47 GLY GLY G . n B 1 48 VAL 48 48 48 VAL VAL G . n B 1 49 VAL 49 49 49 VAL VAL G . n B 1 50 HIS 50 50 50 HIS HIS G . n B 1 51 GLY 51 51 51 GLY GLY G . n B 1 52 VAL 52 52 52 VAL VAL G . n B 1 53 ALA 53 53 53 ALA ALA G . n B 1 54 THR 54 54 54 THR THR G . n B 1 55 VAL 55 55 55 VAL VAL G . n B 1 56 ALA 56 56 56 ALA ALA G . n B 1 57 GLU 57 57 57 GLU GLU G . n B 1 58 LYS 58 58 58 LYS LYS G . n B 1 59 THR 59 59 59 THR THR G . n B 1 60 LYS 60 60 60 LYS LYS G . n B 1 61 GLU 61 61 61 GLU GLU G . n B 1 62 GLN 62 62 62 GLN GLN G . n B 1 63 VAL 63 63 63 VAL VAL G . n B 1 64 THR 64 64 64 THR THR G . n B 1 65 ASN 65 65 65 ASN ASN G . n B 1 66 VAL 66 66 66 VAL VAL G . n B 1 67 GLY 67 67 67 GLY GLY G . n B 1 68 GLY 68 68 68 GLY GLY G . n B 1 69 ALA 69 69 69 ALA ALA G . n B 1 70 VAL 70 70 70 VAL VAL G . n B 1 71 VAL 71 71 71 VAL VAL G . n B 1 72 THR 72 72 72 THR THR G . n B 1 73 GLY 73 73 73 GLY GLY G . n B 1 74 VAL 74 74 74 VAL VAL G . n B 1 75 THR 75 75 75 THR THR G . n B 1 76 ALA 76 76 76 ALA ALA G . n B 1 77 VAL 77 77 77 VAL VAL G . n B 1 78 ALA 78 78 78 ALA ALA G . n B 1 79 GLN 79 79 79 GLN GLN G . n B 1 80 LYS 80 80 80 LYS LYS G . n B 1 81 THR 81 81 81 THR THR G . n B 1 82 VAL 82 82 82 VAL VAL G . n B 1 83 GLU 83 83 83 GLU GLU G . n B 1 84 GLY 84 84 84 GLY GLY G . n B 1 85 ALA 85 85 85 ALA ALA G . n B 1 86 GLY 86 86 86 GLY GLY G . n B 1 87 SER 87 87 87 SER SER G . n B 1 88 ILE 88 88 88 ILE ILE G . n B 1 89 ALA 89 89 89 ALA ALA G . n B 1 90 ALA 90 90 90 ALA ALA G . n B 1 91 ALA 91 91 91 ALA ALA G . n B 1 92 THR 92 92 92 THR THR G . n B 1 93 GLY 93 93 93 GLY GLY G . n B 1 94 PHE 94 94 94 PHE PHE G . n B 1 95 VAL 95 95 95 VAL VAL G . n B 1 96 LYS 96 96 96 LYS LYS G . n C 1 1 MET 1 1 1 MET MET C . n C 1 2 ASP 2 2 2 ASP ASP C . n C 1 3 VAL 3 3 3 VAL VAL C . n C 1 4 PHE 4 4 4 PHE PHE C . n C 1 5 MET 5 5 5 MET MET C . n C 1 6 LYS 6 6 6 LYS LYS C . n C 1 7 GLY 7 7 7 GLY GLY C . n C 1 8 LEU 8 8 8 LEU LEU C . n C 1 9 SER 9 9 9 SER SER C . n C 1 10 LYS 10 10 10 LYS LYS C . n C 1 11 ALA 11 11 11 ALA ALA C . n C 1 12 LYS 12 12 12 LYS LYS C . n C 1 13 GLU 13 13 13 GLU GLU C . n C 1 14 GLY 14 14 14 GLY GLY C . n C 1 15 VAL 15 15 15 VAL VAL C . n C 1 16 VAL 16 16 16 VAL VAL C . n C 1 17 ALA 17 17 17 ALA ALA C . n C 1 18 ALA 18 18 18 ALA ALA C . n C 1 19 ALA 19 19 19 ALA ALA C . n C 1 20 GLU 20 20 20 GLU GLU C . n C 1 21 LYS 21 21 21 LYS LYS C . n C 1 22 THR 22 22 22 THR THR C . n C 1 23 LYS 23 23 23 LYS LYS C . n C 1 24 GLN 24 24 24 GLN GLN C . n C 1 25 GLY 25 25 25 GLY GLY C . n C 1 26 VAL 26 26 26 VAL VAL C . n C 1 27 ALA 27 27 27 ALA ALA C . n C 1 28 GLU 28 28 28 GLU GLU C . n C 1 29 ALA 29 29 29 ALA ALA C . n C 1 30 ALA 30 30 30 ALA ALA C . n C 1 31 GLY 31 31 31 GLY GLY C . n C 1 32 LYS 32 32 32 LYS LYS C . n C 1 33 THR 33 33 33 THR THR C . n C 1 34 LYS 34 34 34 LYS LYS C . n C 1 35 GLU 35 35 35 GLU GLU C . n C 1 36 GLY 36 36 36 GLY GLY C . n C 1 37 VAL 37 37 37 VAL VAL C . n C 1 38 LEU 38 38 38 LEU LEU C . n C 1 39 TYR 39 39 39 TYR TYR C . n C 1 40 VAL 40 40 40 VAL VAL C . n C 1 41 GLY 41 41 41 GLY GLY C . n C 1 42 SER 42 42 42 SER SER C . n C 1 43 LYS 43 43 43 LYS LYS C . n C 1 44 THR 44 44 44 THR THR C . n C 1 45 LYS 45 45 45 LYS LYS C . n C 1 46 GLU 46 46 46 GLU GLU C . n C 1 47 GLY 47 47 47 GLY GLY C . n C 1 48 VAL 48 48 48 VAL VAL C . n C 1 49 VAL 49 49 49 VAL VAL C . n C 1 50 HIS 50 50 50 HIS HIS C . n C 1 51 GLY 51 51 51 GLY GLY C . n C 1 52 VAL 52 52 52 VAL VAL C . n C 1 53 ALA 53 53 53 ALA ALA C . n C 1 54 THR 54 54 54 THR THR C . n C 1 55 VAL 55 55 55 VAL VAL C . n C 1 56 ALA 56 56 56 ALA ALA C . n C 1 57 GLU 57 57 57 GLU GLU C . n C 1 58 LYS 58 58 58 LYS LYS C . n C 1 59 THR 59 59 59 THR THR C . n C 1 60 LYS 60 60 60 LYS LYS C . n C 1 61 GLU 61 61 61 GLU GLU C . n C 1 62 GLN 62 62 62 GLN GLN C . n C 1 63 VAL 63 63 63 VAL VAL C . n C 1 64 THR 64 64 64 THR THR C . n C 1 65 ASN 65 65 65 ASN ASN C . n C 1 66 VAL 66 66 66 VAL VAL C . n C 1 67 GLY 67 67 67 GLY GLY C . n C 1 68 GLY 68 68 68 GLY GLY C . n C 1 69 ALA 69 69 69 ALA ALA C . n C 1 70 VAL 70 70 70 VAL VAL C . n C 1 71 VAL 71 71 71 VAL VAL C . n C 1 72 THR 72 72 72 THR THR C . n C 1 73 GLY 73 73 73 GLY GLY C . n C 1 74 VAL 74 74 74 VAL VAL C . n C 1 75 THR 75 75 75 THR THR C . n C 1 76 ALA 76 76 76 ALA ALA C . n C 1 77 VAL 77 77 77 VAL VAL C . n C 1 78 ALA 78 78 78 ALA ALA C . n C 1 79 GLN 79 79 79 GLN GLN C . n C 1 80 LYS 80 80 80 LYS LYS C . n C 1 81 THR 81 81 81 THR THR C . n C 1 82 VAL 82 82 82 VAL VAL C . n C 1 83 GLU 83 83 83 GLU GLU C . n C 1 84 GLY 84 84 84 GLY GLY C . n C 1 85 ALA 85 85 85 ALA ALA C . n C 1 86 GLY 86 86 86 GLY GLY C . n C 1 87 SER 87 87 87 SER SER C . n C 1 88 ILE 88 88 88 ILE ILE C . n C 1 89 ALA 89 89 89 ALA ALA C . n C 1 90 ALA 90 90 90 ALA ALA C . n C 1 91 ALA 91 91 91 ALA ALA C . n C 1 92 THR 92 92 92 THR THR C . n C 1 93 GLY 93 93 93 GLY GLY C . n C 1 94 PHE 94 94 94 PHE PHE C . n C 1 95 VAL 95 95 95 VAL VAL C . n C 1 96 LYS 96 96 96 LYS LYS C . n D 1 1 MET 1 1 1 MET MET H . n D 1 2 ASP 2 2 2 ASP ASP H . n D 1 3 VAL 3 3 3 VAL VAL H . n D 1 4 PHE 4 4 4 PHE PHE H . n D 1 5 MET 5 5 5 MET MET H . n D 1 6 LYS 6 6 6 LYS LYS H . n D 1 7 GLY 7 7 7 GLY GLY H . n D 1 8 LEU 8 8 8 LEU LEU H . n D 1 9 SER 9 9 9 SER SER H . n D 1 10 LYS 10 10 10 LYS LYS H . n D 1 11 ALA 11 11 11 ALA ALA H . n D 1 12 LYS 12 12 12 LYS LYS H . n D 1 13 GLU 13 13 13 GLU GLU H . n D 1 14 GLY 14 14 14 GLY GLY H . n D 1 15 VAL 15 15 15 VAL VAL H . n D 1 16 VAL 16 16 16 VAL VAL H . n D 1 17 ALA 17 17 17 ALA ALA H . n D 1 18 ALA 18 18 18 ALA ALA H . n D 1 19 ALA 19 19 19 ALA ALA H . n D 1 20 GLU 20 20 20 GLU GLU H . n D 1 21 LYS 21 21 21 LYS LYS H . n D 1 22 THR 22 22 22 THR THR H . n D 1 23 LYS 23 23 23 LYS LYS H . n D 1 24 GLN 24 24 24 GLN GLN H . n D 1 25 GLY 25 25 25 GLY GLY H . n D 1 26 VAL 26 26 26 VAL VAL H . n D 1 27 ALA 27 27 27 ALA ALA H . n D 1 28 GLU 28 28 28 GLU GLU H . n D 1 29 ALA 29 29 29 ALA ALA H . n D 1 30 ALA 30 30 30 ALA ALA H . n D 1 31 GLY 31 31 31 GLY GLY H . n D 1 32 LYS 32 32 32 LYS LYS H . n D 1 33 THR 33 33 33 THR THR H . n D 1 34 LYS 34 34 34 LYS LYS H . n D 1 35 GLU 35 35 35 GLU GLU H . n D 1 36 GLY 36 36 36 GLY GLY H . n D 1 37 VAL 37 37 37 VAL VAL H . n D 1 38 LEU 38 38 38 LEU LEU H . n D 1 39 TYR 39 39 39 TYR TYR H . n D 1 40 VAL 40 40 40 VAL VAL H . n D 1 41 GLY 41 41 41 GLY GLY H . n D 1 42 SER 42 42 42 SER SER H . n D 1 43 LYS 43 43 43 LYS LYS H . n D 1 44 THR 44 44 44 THR THR H . n D 1 45 LYS 45 45 45 LYS LYS H . n D 1 46 GLU 46 46 46 GLU GLU H . n D 1 47 GLY 47 47 47 GLY GLY H . n D 1 48 VAL 48 48 48 VAL VAL H . n D 1 49 VAL 49 49 49 VAL VAL H . n D 1 50 HIS 50 50 50 HIS HIS H . n D 1 51 GLY 51 51 51 GLY GLY H . n D 1 52 VAL 52 52 52 VAL VAL H . n D 1 53 ALA 53 53 53 ALA ALA H . n D 1 54 THR 54 54 54 THR THR H . n D 1 55 VAL 55 55 55 VAL VAL H . n D 1 56 ALA 56 56 56 ALA ALA H . n D 1 57 GLU 57 57 57 GLU GLU H . n D 1 58 LYS 58 58 58 LYS LYS H . n D 1 59 THR 59 59 59 THR THR H . n D 1 60 LYS 60 60 60 LYS LYS H . n D 1 61 GLU 61 61 61 GLU GLU H . n D 1 62 GLN 62 62 62 GLN GLN H . n D 1 63 VAL 63 63 63 VAL VAL H . n D 1 64 THR 64 64 64 THR THR H . n D 1 65 ASN 65 65 65 ASN ASN H . n D 1 66 VAL 66 66 66 VAL VAL H . n D 1 67 GLY 67 67 67 GLY GLY H . n D 1 68 GLY 68 68 68 GLY GLY H . n D 1 69 ALA 69 69 69 ALA ALA H . n D 1 70 VAL 70 70 70 VAL VAL H . n D 1 71 VAL 71 71 71 VAL VAL H . n D 1 72 THR 72 72 72 THR THR H . n D 1 73 GLY 73 73 73 GLY GLY H . n D 1 74 VAL 74 74 74 VAL VAL H . n D 1 75 THR 75 75 75 THR THR H . n D 1 76 ALA 76 76 76 ALA ALA H . n D 1 77 VAL 77 77 77 VAL VAL H . n D 1 78 ALA 78 78 78 ALA ALA H . n D 1 79 GLN 79 79 79 GLN GLN H . n D 1 80 LYS 80 80 80 LYS LYS H . n D 1 81 THR 81 81 81 THR THR H . n D 1 82 VAL 82 82 82 VAL VAL H . n D 1 83 GLU 83 83 83 GLU GLU H . n D 1 84 GLY 84 84 84 GLY GLY H . n D 1 85 ALA 85 85 85 ALA ALA H . n D 1 86 GLY 86 86 86 GLY GLY H . n D 1 87 SER 87 87 87 SER SER H . n D 1 88 ILE 88 88 88 ILE ILE H . n D 1 89 ALA 89 89 89 ALA ALA H . n D 1 90 ALA 90 90 90 ALA ALA H . n D 1 91 ALA 91 91 91 ALA ALA H . n D 1 92 THR 92 92 92 THR THR H . n D 1 93 GLY 93 93 93 GLY GLY H . n D 1 94 PHE 94 94 94 PHE PHE H . n D 1 95 VAL 95 95 95 VAL VAL H . n D 1 96 LYS 96 96 96 LYS LYS H . n E 1 1 MET 1 1 1 MET MET B . n E 1 2 ASP 2 2 2 ASP ASP B . n E 1 3 VAL 3 3 3 VAL VAL B . n E 1 4 PHE 4 4 4 PHE PHE B . n E 1 5 MET 5 5 5 MET MET B . n E 1 6 LYS 6 6 6 LYS LYS B . n E 1 7 GLY 7 7 7 GLY GLY B . n E 1 8 LEU 8 8 8 LEU LEU B . n E 1 9 SER 9 9 9 SER SER B . n E 1 10 LYS 10 10 10 LYS LYS B . n E 1 11 ALA 11 11 11 ALA ALA B . n E 1 12 LYS 12 12 12 LYS LYS B . n E 1 13 GLU 13 13 13 GLU GLU B . n E 1 14 GLY 14 14 14 GLY GLY B . n E 1 15 VAL 15 15 15 VAL VAL B . n E 1 16 VAL 16 16 16 VAL VAL B . n E 1 17 ALA 17 17 17 ALA ALA B . n E 1 18 ALA 18 18 18 ALA ALA B . n E 1 19 ALA 19 19 19 ALA ALA B . n E 1 20 GLU 20 20 20 GLU GLU B . n E 1 21 LYS 21 21 21 LYS LYS B . n E 1 22 THR 22 22 22 THR THR B . n E 1 23 LYS 23 23 23 LYS LYS B . n E 1 24 GLN 24 24 24 GLN GLN B . n E 1 25 GLY 25 25 25 GLY GLY B . n E 1 26 VAL 26 26 26 VAL VAL B . n E 1 27 ALA 27 27 27 ALA ALA B . n E 1 28 GLU 28 28 28 GLU GLU B . n E 1 29 ALA 29 29 29 ALA ALA B . n E 1 30 ALA 30 30 30 ALA ALA B . n E 1 31 GLY 31 31 31 GLY GLY B . n E 1 32 LYS 32 32 32 LYS LYS B . n E 1 33 THR 33 33 33 THR THR B . n E 1 34 LYS 34 34 34 LYS LYS B . n E 1 35 GLU 35 35 35 GLU GLU B . n E 1 36 GLY 36 36 36 GLY GLY B . n E 1 37 VAL 37 37 37 VAL VAL B . n E 1 38 LEU 38 38 38 LEU LEU B . n E 1 39 TYR 39 39 39 TYR TYR B . n E 1 40 VAL 40 40 40 VAL VAL B . n E 1 41 GLY 41 41 41 GLY GLY B . n E 1 42 SER 42 42 42 SER SER B . n E 1 43 LYS 43 43 43 LYS LYS B . n E 1 44 THR 44 44 44 THR THR B . n E 1 45 LYS 45 45 45 LYS LYS B . n E 1 46 GLU 46 46 46 GLU GLU B . n E 1 47 GLY 47 47 47 GLY GLY B . n E 1 48 VAL 48 48 48 VAL VAL B . n E 1 49 VAL 49 49 49 VAL VAL B . n E 1 50 HIS 50 50 50 HIS HIS B . n E 1 51 GLY 51 51 51 GLY GLY B . n E 1 52 VAL 52 52 52 VAL VAL B . n E 1 53 ALA 53 53 53 ALA ALA B . n E 1 54 THR 54 54 54 THR THR B . n E 1 55 VAL 55 55 55 VAL VAL B . n E 1 56 ALA 56 56 56 ALA ALA B . n E 1 57 GLU 57 57 57 GLU GLU B . n E 1 58 LYS 58 58 58 LYS LYS B . n E 1 59 THR 59 59 59 THR THR B . n E 1 60 LYS 60 60 60 LYS LYS B . n E 1 61 GLU 61 61 61 GLU GLU B . n E 1 62 GLN 62 62 62 GLN GLN B . n E 1 63 VAL 63 63 63 VAL VAL B . n E 1 64 THR 64 64 64 THR THR B . n E 1 65 ASN 65 65 65 ASN ASN B . n E 1 66 VAL 66 66 66 VAL VAL B . n E 1 67 GLY 67 67 67 GLY GLY B . n E 1 68 GLY 68 68 68 GLY GLY B . n E 1 69 ALA 69 69 69 ALA ALA B . n E 1 70 VAL 70 70 70 VAL VAL B . n E 1 71 VAL 71 71 71 VAL VAL B . n E 1 72 THR 72 72 72 THR THR B . n E 1 73 GLY 73 73 73 GLY GLY B . n E 1 74 VAL 74 74 74 VAL VAL B . n E 1 75 THR 75 75 75 THR THR B . n E 1 76 ALA 76 76 76 ALA ALA B . n E 1 77 VAL 77 77 77 VAL VAL B . n E 1 78 ALA 78 78 78 ALA ALA B . n E 1 79 GLN 79 79 79 GLN GLN B . n E 1 80 LYS 80 80 80 LYS LYS B . n E 1 81 THR 81 81 81 THR THR B . n E 1 82 VAL 82 82 82 VAL VAL B . n E 1 83 GLU 83 83 83 GLU GLU B . n E 1 84 GLY 84 84 84 GLY GLY B . n E 1 85 ALA 85 85 85 ALA ALA B . n E 1 86 GLY 86 86 86 GLY GLY B . n E 1 87 SER 87 87 87 SER SER B . n E 1 88 ILE 88 88 88 ILE ILE B . n E 1 89 ALA 89 89 89 ALA ALA B . n E 1 90 ALA 90 90 90 ALA ALA B . n E 1 91 ALA 91 91 91 ALA ALA B . n E 1 92 THR 92 92 92 THR THR B . n E 1 93 GLY 93 93 93 GLY GLY B . n E 1 94 PHE 94 94 94 PHE PHE B . n E 1 95 VAL 95 95 95 VAL VAL B . n E 1 96 LYS 96 96 96 LYS LYS B . n F 1 1 MET 1 1 1 MET MET F . n F 1 2 ASP 2 2 2 ASP ASP F . n F 1 3 VAL 3 3 3 VAL VAL F . n F 1 4 PHE 4 4 4 PHE PHE F . n F 1 5 MET 5 5 5 MET MET F . n F 1 6 LYS 6 6 6 LYS LYS F . n F 1 7 GLY 7 7 7 GLY GLY F . n F 1 8 LEU 8 8 8 LEU LEU F . n F 1 9 SER 9 9 9 SER SER F . n F 1 10 LYS 10 10 10 LYS LYS F . n F 1 11 ALA 11 11 11 ALA ALA F . n F 1 12 LYS 12 12 12 LYS LYS F . n F 1 13 GLU 13 13 13 GLU GLU F . n F 1 14 GLY 14 14 14 GLY GLY F . n F 1 15 VAL 15 15 15 VAL VAL F . n F 1 16 VAL 16 16 16 VAL VAL F . n F 1 17 ALA 17 17 17 ALA ALA F . n F 1 18 ALA 18 18 18 ALA ALA F . n F 1 19 ALA 19 19 19 ALA ALA F . n F 1 20 GLU 20 20 20 GLU GLU F . n F 1 21 LYS 21 21 21 LYS LYS F . n F 1 22 THR 22 22 22 THR THR F . n F 1 23 LYS 23 23 23 LYS LYS F . n F 1 24 GLN 24 24 24 GLN GLN F . n F 1 25 GLY 25 25 25 GLY GLY F . n F 1 26 VAL 26 26 26 VAL VAL F . n F 1 27 ALA 27 27 27 ALA ALA F . n F 1 28 GLU 28 28 28 GLU GLU F . n F 1 29 ALA 29 29 29 ALA ALA F . n F 1 30 ALA 30 30 30 ALA ALA F . n F 1 31 GLY 31 31 31 GLY GLY F . n F 1 32 LYS 32 32 32 LYS LYS F . n F 1 33 THR 33 33 33 THR THR F . n F 1 34 LYS 34 34 34 LYS LYS F . n F 1 35 GLU 35 35 35 GLU GLU F . n F 1 36 GLY 36 36 36 GLY GLY F . n F 1 37 VAL 37 37 37 VAL VAL F . n F 1 38 LEU 38 38 38 LEU LEU F . n F 1 39 TYR 39 39 39 TYR TYR F . n F 1 40 VAL 40 40 40 VAL VAL F . n F 1 41 GLY 41 41 41 GLY GLY F . n F 1 42 SER 42 42 42 SER SER F . n F 1 43 LYS 43 43 43 LYS LYS F . n F 1 44 THR 44 44 44 THR THR F . n F 1 45 LYS 45 45 45 LYS LYS F . n F 1 46 GLU 46 46 46 GLU GLU F . n F 1 47 GLY 47 47 47 GLY GLY F . n F 1 48 VAL 48 48 48 VAL VAL F . n F 1 49 VAL 49 49 49 VAL VAL F . n F 1 50 HIS 50 50 50 HIS HIS F . n F 1 51 GLY 51 51 51 GLY GLY F . n F 1 52 VAL 52 52 52 VAL VAL F . n F 1 53 ALA 53 53 53 ALA ALA F . n F 1 54 THR 54 54 54 THR THR F . n F 1 55 VAL 55 55 55 VAL VAL F . n F 1 56 ALA 56 56 56 ALA ALA F . n F 1 57 GLU 57 57 57 GLU GLU F . n F 1 58 LYS 58 58 58 LYS LYS F . n F 1 59 THR 59 59 59 THR THR F . n F 1 60 LYS 60 60 60 LYS LYS F . n F 1 61 GLU 61 61 61 GLU GLU F . n F 1 62 GLN 62 62 62 GLN GLN F . n F 1 63 VAL 63 63 63 VAL VAL F . n F 1 64 THR 64 64 64 THR THR F . n F 1 65 ASN 65 65 65 ASN ASN F . n F 1 66 VAL 66 66 66 VAL VAL F . n F 1 67 GLY 67 67 67 GLY GLY F . n F 1 68 GLY 68 68 68 GLY GLY F . n F 1 69 ALA 69 69 69 ALA ALA F . n F 1 70 VAL 70 70 70 VAL VAL F . n F 1 71 VAL 71 71 71 VAL VAL F . n F 1 72 THR 72 72 72 THR THR F . n F 1 73 GLY 73 73 73 GLY GLY F . n F 1 74 VAL 74 74 74 VAL VAL F . n F 1 75 THR 75 75 75 THR THR F . n F 1 76 ALA 76 76 76 ALA ALA F . n F 1 77 VAL 77 77 77 VAL VAL F . n F 1 78 ALA 78 78 78 ALA ALA F . n F 1 79 GLN 79 79 79 GLN GLN F . n F 1 80 LYS 80 80 80 LYS LYS F . n F 1 81 THR 81 81 81 THR THR F . n F 1 82 VAL 82 82 82 VAL VAL F . n F 1 83 GLU 83 83 83 GLU GLU F . n F 1 84 GLY 84 84 84 GLY GLY F . n F 1 85 ALA 85 85 85 ALA ALA F . n F 1 86 GLY 86 86 86 GLY GLY F . n F 1 87 SER 87 87 87 SER SER F . n F 1 88 ILE 88 88 88 ILE ILE F . n F 1 89 ALA 89 89 89 ALA ALA F . n F 1 90 ALA 90 90 90 ALA ALA F . n F 1 91 ALA 91 91 91 ALA ALA F . n F 1 92 THR 92 92 92 THR THR F . n F 1 93 GLY 93 93 93 GLY GLY F . n F 1 94 PHE 94 94 94 PHE PHE F . n F 1 95 VAL 95 95 95 VAL VAL F . n F 1 96 LYS 96 96 96 LYS LYS F . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NAG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NAG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NAG 1 101 101 NAG NAG A . H 2 NAG 1 101 101 NAG NAG G . I 2 NAG 1 101 101 NAG NAG C . J 2 NAG 1 101 101 NAG NAG H . K 2 NAG 1 101 101 NAG NAG B . L 2 NAG 1 101 101 NAG NAG F . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9D5C _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9D5C _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9D5C _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 9D5C _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 6830 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.642 ? 9170 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 8.333 ? 1170 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.049 ? 1170 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.002 ? 1130 ? f_plane_restr ? ? # _struct.entry_id 9D5C _struct.title 'Cryo-EM structure of serine 87 O-GlcNAc-modified alpha-synuclein fibrils' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9D5C _struct_keywords.text 'alpha-synuclein, O-GlcNAc, amyloid, fibril, posttranslational modification, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SYUA_HUMAN _struct_ref.pdbx_db_accession P37840 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQK TVEGAGSIAAATGFVK ; _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9D5C A 1 ? 96 ? P37840 1 ? 96 ? 1 96 2 1 9D5C G 1 ? 96 ? P37840 1 ? 96 ? 1 96 3 1 9D5C C 1 ? 96 ? P37840 1 ? 96 ? 1 96 4 1 9D5C H 1 ? 96 ? P37840 1 ? 96 ? 1 96 5 1 9D5C B 1 ? 96 ? P37840 1 ? 96 ? 1 96 6 1 9D5C F 1 ? 96 ? P37840 1 ? 96 ? 1 96 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A SER 87 OG ? ? ? 1_555 G NAG . C1 ? ? A SER 87 A NAG 101 1_555 ? ? ? ? ? ? ? 1.440 ? O-Glycosylation covale2 covale one ? B SER 87 OG ? ? ? 1_555 H NAG . C1 ? ? G SER 87 G NAG 101 1_555 ? ? ? ? ? ? ? 1.440 ? O-Glycosylation covale3 covale one ? C SER 87 OG ? ? ? 1_555 I NAG . C1 ? ? C SER 87 C NAG 101 1_555 ? ? ? ? ? ? ? 1.440 ? O-Glycosylation covale4 covale one ? D SER 87 OG ? ? ? 1_555 J NAG . C1 ? ? H SER 87 H NAG 101 1_555 ? ? ? ? ? ? ? 1.441 ? O-Glycosylation covale5 covale one ? E SER 87 OG ? ? ? 1_555 K NAG . C1 ? ? B SER 87 B NAG 101 1_555 ? ? ? ? ? ? ? 1.439 ? O-Glycosylation covale6 covale one ? F SER 87 OG ? ? ? 1_555 L NAG . C1 ? ? F SER 87 F NAG 101 1_555 ? ? ? ? ? ? ? 1.441 ? O-Glycosylation # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG G . ? SER A 87 ? NAG A 101 ? 1_555 SER A 87 ? 1_555 C1 OG SER 5 NAG O-Glycosylation Carbohydrate 2 NAG H . ? SER B 87 ? NAG G 101 ? 1_555 SER G 87 ? 1_555 C1 OG SER 5 NAG O-Glycosylation Carbohydrate 3 NAG I . ? SER C 87 ? NAG C 101 ? 1_555 SER C 87 ? 1_555 C1 OG SER 5 NAG O-Glycosylation Carbohydrate 4 NAG J . ? SER D 87 ? NAG H 101 ? 1_555 SER H 87 ? 1_555 C1 OG SER 5 NAG O-Glycosylation Carbohydrate 5 NAG K . ? SER E 87 ? NAG B 101 ? 1_555 SER B 87 ? 1_555 C1 OG SER 5 NAG O-Glycosylation Carbohydrate 6 NAG L . ? SER F 87 ? NAG F 101 ? 1_555 SER F 87 ? 1_555 C1 OG SER 5 NAG O-Glycosylation Carbohydrate # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 3 ? AA8 ? 3 ? AA9 ? 3 ? AB1 ? 3 ? AB2 ? 3 ? AB3 ? 3 ? AB4 ? 3 ? AB5 ? 3 ? AB6 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel AB2 1 2 ? parallel AB2 2 3 ? parallel AB3 1 2 ? parallel AB3 2 3 ? parallel AB4 1 2 ? parallel AB4 2 3 ? parallel AB5 1 2 ? parallel AB5 2 3 ? parallel AB6 1 2 ? parallel AB6 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU C 8 ? GLU C 20 ? LEU C 8 GLU C 20 AA1 2 LEU A 8 ? GLU A 20 ? LEU A 8 GLU A 20 AA1 3 LEU E 8 ? GLU E 20 ? LEU B 8 GLU B 20 AA2 1 ALA C 29 ? LEU C 38 ? ALA C 29 LEU C 38 AA2 2 ALA A 29 ? LEU A 38 ? ALA A 29 LEU A 38 AA2 3 ALA E 29 ? LEU E 38 ? ALA B 29 LEU B 38 AA3 1 SER C 42 ? VAL C 49 ? SER C 42 VAL C 49 AA3 2 SER A 42 ? VAL A 49 ? SER A 42 VAL A 49 AA3 3 SER E 42 ? VAL E 49 ? SER B 42 VAL B 49 AA4 1 THR C 54 ? VAL C 55 ? THR C 54 VAL C 55 AA4 2 THR A 54 ? VAL A 55 ? THR A 54 VAL A 55 AA4 3 THR E 54 ? VAL E 55 ? THR B 54 VAL B 55 AA5 1 LYS C 58 ? VAL C 66 ? LYS C 58 VAL C 66 AA5 2 LYS A 58 ? VAL A 66 ? LYS A 58 VAL A 66 AA5 3 LYS E 58 ? VAL E 66 ? LYS B 58 VAL B 66 AA6 1 VAL C 71 ? THR C 81 ? VAL C 71 THR C 81 AA6 2 VAL A 71 ? THR A 81 ? VAL A 71 THR A 81 AA6 3 VAL E 71 ? THR E 81 ? VAL B 71 THR B 81 AA7 1 ALA C 85 ? VAL C 95 ? ALA C 85 VAL C 95 AA7 2 ALA A 85 ? VAL A 95 ? ALA A 85 VAL A 95 AA7 3 ALA E 85 ? VAL E 95 ? ALA B 85 VAL B 95 AA8 1 LEU D 8 ? GLU D 20 ? LEU H 8 GLU H 20 AA8 2 LEU B 8 ? GLU B 20 ? LEU G 8 GLU G 20 AA8 3 LEU F 8 ? GLU F 20 ? LEU F 8 GLU F 20 AA9 1 ALA D 29 ? LEU D 38 ? ALA H 29 LEU H 38 AA9 2 ALA B 29 ? LEU B 38 ? ALA G 29 LEU G 38 AA9 3 ALA F 29 ? LEU F 38 ? ALA F 29 LEU F 38 AB1 1 SER D 42 ? VAL D 49 ? SER H 42 VAL H 49 AB1 2 SER B 42 ? VAL B 49 ? SER G 42 VAL G 49 AB1 3 SER F 42 ? VAL F 49 ? SER F 42 VAL F 49 AB2 1 THR D 54 ? VAL D 55 ? THR H 54 VAL H 55 AB2 2 THR B 54 ? VAL B 55 ? THR G 54 VAL G 55 AB2 3 THR F 54 ? VAL F 55 ? THR F 54 VAL F 55 AB3 1 LYS D 58 ? VAL D 66 ? LYS H 58 VAL H 66 AB3 2 LYS B 58 ? VAL B 66 ? LYS G 58 VAL G 66 AB3 3 LYS F 58 ? VAL F 66 ? LYS F 58 VAL F 66 AB4 1 VAL D 71 ? THR D 81 ? VAL H 71 THR H 81 AB4 2 VAL B 71 ? THR B 81 ? VAL G 71 THR G 81 AB4 3 VAL F 71 ? THR F 81 ? VAL F 71 THR F 81 AB5 1 ALA D 85 ? ALA D 90 ? ALA H 85 ALA H 90 AB5 2 ALA B 85 ? ALA B 90 ? ALA G 85 ALA G 90 AB5 3 ALA F 85 ? ALA F 90 ? ALA F 85 ALA F 90 AB6 1 GLY D 93 ? VAL D 95 ? GLY H 93 VAL H 95 AB6 2 GLY B 93 ? VAL B 95 ? GLY G 93 VAL G 95 AB6 3 GLY F 93 ? VAL F 95 ? GLY F 93 VAL F 95 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLU C 13 ? O GLU C 13 N LYS A 12 ? N LYS A 12 AA1 2 3 N GLU A 13 ? N GLU A 13 O LYS E 12 ? O LYS B 12 AA2 1 2 O ALA C 29 ? O ALA C 29 N ALA A 30 ? N ALA A 30 AA2 2 3 N ALA A 29 ? N ALA A 29 O ALA E 30 ? O ALA B 30 AA3 1 2 O LYS C 43 ? O LYS C 43 N THR A 44 ? N THR A 44 AA3 2 3 N LYS A 43 ? N LYS A 43 O THR E 44 ? O THR B 44 AA4 1 2 O VAL C 55 ? O VAL C 55 N THR A 54 ? N THR A 54 AA4 2 3 N VAL A 55 ? N VAL A 55 O THR E 54 ? O THR B 54 AA5 1 2 O THR C 64 ? O THR C 64 N VAL A 63 ? N VAL A 63 AA5 2 3 N THR A 64 ? N THR A 64 O VAL E 63 ? O VAL B 63 AA6 1 2 O VAL C 71 ? O VAL C 71 N THR A 72 ? N THR A 72 AA6 2 3 N VAL A 71 ? N VAL A 71 O THR E 72 ? O THR B 72 AA7 1 2 O GLY C 93 ? O GLY C 93 N PHE A 94 ? N PHE A 94 AA7 2 3 N GLY A 86 ? N GLY A 86 O SER E 87 ? O SER B 87 AA8 1 2 O GLU D 13 ? O GLU H 13 N LYS B 12 ? N LYS G 12 AA8 2 3 N GLU B 13 ? N GLU G 13 O LYS F 12 ? O LYS F 12 AA9 1 2 O ALA D 29 ? O ALA H 29 N ALA B 30 ? N ALA G 30 AA9 2 3 N ALA B 29 ? N ALA G 29 O ALA F 30 ? O ALA F 30 AB1 1 2 O LYS D 43 ? O LYS H 43 N THR B 44 ? N THR G 44 AB1 2 3 N LYS B 43 ? N LYS G 43 O THR F 44 ? O THR F 44 AB2 1 2 O VAL D 55 ? O VAL H 55 N THR B 54 ? N THR G 54 AB2 2 3 N VAL B 55 ? N VAL G 55 O THR F 54 ? O THR F 54 AB3 1 2 O THR D 64 ? O THR H 64 N VAL B 63 ? N VAL G 63 AB3 2 3 N THR B 64 ? N THR G 64 O VAL F 63 ? O VAL F 63 AB4 1 2 O VAL D 71 ? O VAL H 71 N THR B 72 ? N THR G 72 AB4 2 3 N VAL B 71 ? N VAL G 71 O THR F 72 ? O THR F 72 AB5 1 2 O GLY D 86 ? O GLY H 86 N SER B 87 ? N SER G 87 AB5 2 3 N GLY B 86 ? N GLY G 86 O SER F 87 ? O SER F 87 AB6 1 2 O GLY D 93 ? O GLY H 93 N PHE B 94 ? N PHE G 94 AB6 2 3 N GLY B 93 ? N GLY G 93 O PHE F 94 ? O PHE F 94 # _pdbx_entry_details.entry_id 9D5C _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG B SER 87 ? ? C2 B NAG 101 ? ? 1.88 2 1 OG G SER 87 ? ? C2 G NAG 101 ? ? 1.88 3 1 OG H SER 87 ? ? C2 H NAG 101 ? ? 1.88 4 1 OG A SER 87 ? ? C2 A NAG 101 ? ? 1.88 5 1 OG F SER 87 ? ? C2 F NAG 101 ? ? 1.88 6 1 OG C SER 87 ? ? C2 C NAG 101 ? ? 1.88 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 6 ? ? -140.51 19.48 2 1 GLU A 13 ? ? 55.32 70.20 3 1 ALA A 53 ? ? -96.51 -61.05 4 1 LYS G 6 ? ? -140.58 19.52 5 1 GLU G 13 ? ? 55.31 70.24 6 1 ALA G 53 ? ? -96.43 -61.08 7 1 LYS C 6 ? ? -140.51 19.46 8 1 GLU C 13 ? ? 55.33 70.23 9 1 ALA C 53 ? ? -96.43 -61.05 10 1 LYS H 6 ? ? -140.55 19.52 11 1 GLU H 13 ? ? 55.27 70.24 12 1 ALA H 53 ? ? -96.48 -61.03 13 1 LYS B 6 ? ? -140.56 19.47 14 1 GLU B 13 ? ? 55.34 70.23 15 1 ALA B 53 ? ? -96.40 -61.08 16 1 LYS F 6 ? ? -140.55 19.53 17 1 GLU F 13 ? ? 55.31 70.27 18 1 ALA F 53 ? ? -96.46 -61.12 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9D5C _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 6A6B _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 6A6B _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 9D5C _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 4.8 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 22042 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details 'normal PBS' _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'serine 87 O-GlcNAc-modified alpha-synuclein' _em_entity_assembly.details 'This protein is chemically synthesized' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9D5C _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 2200 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9D5C _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 298 _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9D5C _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 GLN N N N N 47 GLN CA C N S 48 GLN C C N N 49 GLN O O N N 50 GLN CB C N N 51 GLN CG C N N 52 GLN CD C N N 53 GLN OE1 O N N 54 GLN NE2 N N N 55 GLN OXT O N N 56 GLN H H N N 57 GLN H2 H N N 58 GLN HA H N N 59 GLN HB2 H N N 60 GLN HB3 H N N 61 GLN HG2 H N N 62 GLN HG3 H N N 63 GLN HE21 H N N 64 GLN HE22 H N N 65 GLN HXT H N N 66 GLU N N N N 67 GLU CA C N S 68 GLU C C N N 69 GLU O O N N 70 GLU CB C N N 71 GLU CG C N N 72 GLU CD C N N 73 GLU OE1 O N N 74 GLU OE2 O N N 75 GLU OXT O N N 76 GLU H H N N 77 GLU H2 H N N 78 GLU HA H N N 79 GLU HB2 H N N 80 GLU HB3 H N N 81 GLU HG2 H N N 82 GLU HG3 H N N 83 GLU HE2 H N N 84 GLU HXT H N N 85 GLY N N N N 86 GLY CA C N N 87 GLY C C N N 88 GLY O O N N 89 GLY OXT O N N 90 GLY H H N N 91 GLY H2 H N N 92 GLY HA2 H N N 93 GLY HA3 H N N 94 GLY HXT H N N 95 HIS N N N N 96 HIS CA C N S 97 HIS C C N N 98 HIS O O N N 99 HIS CB C N N 100 HIS CG C Y N 101 HIS ND1 N Y N 102 HIS CD2 C Y N 103 HIS CE1 C Y N 104 HIS NE2 N Y N 105 HIS OXT O N N 106 HIS H H N N 107 HIS H2 H N N 108 HIS HA H N N 109 HIS HB2 H N N 110 HIS HB3 H N N 111 HIS HD1 H N N 112 HIS HD2 H N N 113 HIS HE1 H N N 114 HIS HE2 H N N 115 HIS HXT H N N 116 ILE N N N N 117 ILE CA C N S 118 ILE C C N N 119 ILE O O N N 120 ILE CB C N S 121 ILE CG1 C N N 122 ILE CG2 C N N 123 ILE CD1 C N N 124 ILE OXT O N N 125 ILE H H N N 126 ILE H2 H N N 127 ILE HA H N N 128 ILE HB H N N 129 ILE HG12 H N N 130 ILE HG13 H N N 131 ILE HG21 H N N 132 ILE HG22 H N N 133 ILE HG23 H N N 134 ILE HD11 H N N 135 ILE HD12 H N N 136 ILE HD13 H N N 137 ILE HXT H N N 138 LEU N N N N 139 LEU CA C N S 140 LEU C C N N 141 LEU O O N N 142 LEU CB C N N 143 LEU CG C N N 144 LEU CD1 C N N 145 LEU CD2 C N N 146 LEU OXT O N N 147 LEU H H N N 148 LEU H2 H N N 149 LEU HA H N N 150 LEU HB2 H N N 151 LEU HB3 H N N 152 LEU HG H N N 153 LEU HD11 H N N 154 LEU HD12 H N N 155 LEU HD13 H N N 156 LEU HD21 H N N 157 LEU HD22 H N N 158 LEU HD23 H N N 159 LEU HXT H N N 160 LYS N N N N 161 LYS CA C N S 162 LYS C C N N 163 LYS O O N N 164 LYS CB C N N 165 LYS CG C N N 166 LYS CD C N N 167 LYS CE C N N 168 LYS NZ N N N 169 LYS OXT O N N 170 LYS H H N N 171 LYS H2 H N N 172 LYS HA H N N 173 LYS HB2 H N N 174 LYS HB3 H N N 175 LYS HG2 H N N 176 LYS HG3 H N N 177 LYS HD2 H N N 178 LYS HD3 H N N 179 LYS HE2 H N N 180 LYS HE3 H N N 181 LYS HZ1 H N N 182 LYS HZ2 H N N 183 LYS HZ3 H N N 184 LYS HXT H N N 185 MET N N N N 186 MET CA C N S 187 MET C C N N 188 MET O O N N 189 MET CB C N N 190 MET CG C N N 191 MET SD S N N 192 MET CE C N N 193 MET OXT O N N 194 MET H H N N 195 MET H2 H N N 196 MET HA H N N 197 MET HB2 H N N 198 MET HB3 H N N 199 MET HG2 H N N 200 MET HG3 H N N 201 MET HE1 H N N 202 MET HE2 H N N 203 MET HE3 H N N 204 MET HXT H N N 205 NAG C1 C N R 206 NAG C2 C N R 207 NAG C3 C N R 208 NAG C4 C N S 209 NAG C5 C N R 210 NAG C6 C N N 211 NAG C7 C N N 212 NAG C8 C N N 213 NAG N2 N N N 214 NAG O1 O N N 215 NAG O3 O N N 216 NAG O4 O N N 217 NAG O5 O N N 218 NAG O6 O N N 219 NAG O7 O N N 220 NAG H1 H N N 221 NAG H2 H N N 222 NAG H3 H N N 223 NAG H4 H N N 224 NAG H5 H N N 225 NAG H61 H N N 226 NAG H62 H N N 227 NAG H81 H N N 228 NAG H82 H N N 229 NAG H83 H N N 230 NAG HN2 H N N 231 NAG HO1 H N N 232 NAG HO3 H N N 233 NAG HO4 H N N 234 NAG HO6 H N N 235 PHE N N N N 236 PHE CA C N S 237 PHE C C N N 238 PHE O O N N 239 PHE CB C N N 240 PHE CG C Y N 241 PHE CD1 C Y N 242 PHE CD2 C Y N 243 PHE CE1 C Y N 244 PHE CE2 C Y N 245 PHE CZ C Y N 246 PHE OXT O N N 247 PHE H H N N 248 PHE H2 H N N 249 PHE HA H N N 250 PHE HB2 H N N 251 PHE HB3 H N N 252 PHE HD1 H N N 253 PHE HD2 H N N 254 PHE HE1 H N N 255 PHE HE2 H N N 256 PHE HZ H N N 257 PHE HXT H N N 258 SER N N N N 259 SER CA C N S 260 SER C C N N 261 SER O O N N 262 SER CB C N N 263 SER OG O N N 264 SER OXT O N N 265 SER H H N N 266 SER H2 H N N 267 SER HA H N N 268 SER HB2 H N N 269 SER HB3 H N N 270 SER HG H N N 271 SER HXT H N N 272 THR N N N N 273 THR CA C N S 274 THR C C N N 275 THR O O N N 276 THR CB C N R 277 THR OG1 O N N 278 THR CG2 C N N 279 THR OXT O N N 280 THR H H N N 281 THR H2 H N N 282 THR HA H N N 283 THR HB H N N 284 THR HG1 H N N 285 THR HG21 H N N 286 THR HG22 H N N 287 THR HG23 H N N 288 THR HXT H N N 289 TYR N N N N 290 TYR CA C N S 291 TYR C C N N 292 TYR O O N N 293 TYR CB C N N 294 TYR CG C Y N 295 TYR CD1 C Y N 296 TYR CD2 C Y N 297 TYR CE1 C Y N 298 TYR CE2 C Y N 299 TYR CZ C Y N 300 TYR OH O N N 301 TYR OXT O N N 302 TYR H H N N 303 TYR H2 H N N 304 TYR HA H N N 305 TYR HB2 H N N 306 TYR HB3 H N N 307 TYR HD1 H N N 308 TYR HD2 H N N 309 TYR HE1 H N N 310 TYR HE2 H N N 311 TYR HH H N N 312 TYR HXT H N N 313 VAL N N N N 314 VAL CA C N S 315 VAL C C N N 316 VAL O O N N 317 VAL CB C N N 318 VAL CG1 C N N 319 VAL CG2 C N N 320 VAL OXT O N N 321 VAL H H N N 322 VAL H2 H N N 323 VAL HA H N N 324 VAL HB H N N 325 VAL HG11 H N N 326 VAL HG12 H N N 327 VAL HG13 H N N 328 VAL HG21 H N N 329 VAL HG22 H N N 330 VAL HG23 H N N 331 VAL HXT H N N 332 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 GLN N CA sing N N 44 GLN N H sing N N 45 GLN N H2 sing N N 46 GLN CA C sing N N 47 GLN CA CB sing N N 48 GLN CA HA sing N N 49 GLN C O doub N N 50 GLN C OXT sing N N 51 GLN CB CG sing N N 52 GLN CB HB2 sing N N 53 GLN CB HB3 sing N N 54 GLN CG CD sing N N 55 GLN CG HG2 sing N N 56 GLN CG HG3 sing N N 57 GLN CD OE1 doub N N 58 GLN CD NE2 sing N N 59 GLN NE2 HE21 sing N N 60 GLN NE2 HE22 sing N N 61 GLN OXT HXT sing N N 62 GLU N CA sing N N 63 GLU N H sing N N 64 GLU N H2 sing N N 65 GLU CA C sing N N 66 GLU CA CB sing N N 67 GLU CA HA sing N N 68 GLU C O doub N N 69 GLU C OXT sing N N 70 GLU CB CG sing N N 71 GLU CB HB2 sing N N 72 GLU CB HB3 sing N N 73 GLU CG CD sing N N 74 GLU CG HG2 sing N N 75 GLU CG HG3 sing N N 76 GLU CD OE1 doub N N 77 GLU CD OE2 sing N N 78 GLU OE2 HE2 sing N N 79 GLU OXT HXT sing N N 80 GLY N CA sing N N 81 GLY N H sing N N 82 GLY N H2 sing N N 83 GLY CA C sing N N 84 GLY CA HA2 sing N N 85 GLY CA HA3 sing N N 86 GLY C O doub N N 87 GLY C OXT sing N N 88 GLY OXT HXT sing N N 89 HIS N CA sing N N 90 HIS N H sing N N 91 HIS N H2 sing N N 92 HIS CA C sing N N 93 HIS CA CB sing N N 94 HIS CA HA sing N N 95 HIS C O doub N N 96 HIS C OXT sing N N 97 HIS CB CG sing N N 98 HIS CB HB2 sing N N 99 HIS CB HB3 sing N N 100 HIS CG ND1 sing Y N 101 HIS CG CD2 doub Y N 102 HIS ND1 CE1 doub Y N 103 HIS ND1 HD1 sing N N 104 HIS CD2 NE2 sing Y N 105 HIS CD2 HD2 sing N N 106 HIS CE1 NE2 sing Y N 107 HIS CE1 HE1 sing N N 108 HIS NE2 HE2 sing N N 109 HIS OXT HXT sing N N 110 ILE N CA sing N N 111 ILE N H sing N N 112 ILE N H2 sing N N 113 ILE CA C sing N N 114 ILE CA CB sing N N 115 ILE CA HA sing N N 116 ILE C O doub N N 117 ILE C OXT sing N N 118 ILE CB CG1 sing N N 119 ILE CB CG2 sing N N 120 ILE CB HB sing N N 121 ILE CG1 CD1 sing N N 122 ILE CG1 HG12 sing N N 123 ILE CG1 HG13 sing N N 124 ILE CG2 HG21 sing N N 125 ILE CG2 HG22 sing N N 126 ILE CG2 HG23 sing N N 127 ILE CD1 HD11 sing N N 128 ILE CD1 HD12 sing N N 129 ILE CD1 HD13 sing N N 130 ILE OXT HXT sing N N 131 LEU N CA sing N N 132 LEU N H sing N N 133 LEU N H2 sing N N 134 LEU CA C sing N N 135 LEU CA CB sing N N 136 LEU CA HA sing N N 137 LEU C O doub N N 138 LEU C OXT sing N N 139 LEU CB CG sing N N 140 LEU CB HB2 sing N N 141 LEU CB HB3 sing N N 142 LEU CG CD1 sing N N 143 LEU CG CD2 sing N N 144 LEU CG HG sing N N 145 LEU CD1 HD11 sing N N 146 LEU CD1 HD12 sing N N 147 LEU CD1 HD13 sing N N 148 LEU CD2 HD21 sing N N 149 LEU CD2 HD22 sing N N 150 LEU CD2 HD23 sing N N 151 LEU OXT HXT sing N N 152 LYS N CA sing N N 153 LYS N H sing N N 154 LYS N H2 sing N N 155 LYS CA C sing N N 156 LYS CA CB sing N N 157 LYS CA HA sing N N 158 LYS C O doub N N 159 LYS C OXT sing N N 160 LYS CB CG sing N N 161 LYS CB HB2 sing N N 162 LYS CB HB3 sing N N 163 LYS CG CD sing N N 164 LYS CG HG2 sing N N 165 LYS CG HG3 sing N N 166 LYS CD CE sing N N 167 LYS CD HD2 sing N N 168 LYS CD HD3 sing N N 169 LYS CE NZ sing N N 170 LYS CE HE2 sing N N 171 LYS CE HE3 sing N N 172 LYS NZ HZ1 sing N N 173 LYS NZ HZ2 sing N N 174 LYS NZ HZ3 sing N N 175 LYS OXT HXT sing N N 176 MET N CA sing N N 177 MET N H sing N N 178 MET N H2 sing N N 179 MET CA C sing N N 180 MET CA CB sing N N 181 MET CA HA sing N N 182 MET C O doub N N 183 MET C OXT sing N N 184 MET CB CG sing N N 185 MET CB HB2 sing N N 186 MET CB HB3 sing N N 187 MET CG SD sing N N 188 MET CG HG2 sing N N 189 MET CG HG3 sing N N 190 MET SD CE sing N N 191 MET CE HE1 sing N N 192 MET CE HE2 sing N N 193 MET CE HE3 sing N N 194 MET OXT HXT sing N N 195 NAG C1 C2 sing N N 196 NAG C1 O1 sing N N 197 NAG C1 O5 sing N N 198 NAG C1 H1 sing N N 199 NAG C2 C3 sing N N 200 NAG C2 N2 sing N N 201 NAG C2 H2 sing N N 202 NAG C3 C4 sing N N 203 NAG C3 O3 sing N N 204 NAG C3 H3 sing N N 205 NAG C4 C5 sing N N 206 NAG C4 O4 sing N N 207 NAG C4 H4 sing N N 208 NAG C5 C6 sing N N 209 NAG C5 O5 sing N N 210 NAG C5 H5 sing N N 211 NAG C6 O6 sing N N 212 NAG C6 H61 sing N N 213 NAG C6 H62 sing N N 214 NAG C7 C8 sing N N 215 NAG C7 N2 sing N N 216 NAG C7 O7 doub N N 217 NAG C8 H81 sing N N 218 NAG C8 H82 sing N N 219 NAG C8 H83 sing N N 220 NAG N2 HN2 sing N N 221 NAG O1 HO1 sing N N 222 NAG O3 HO3 sing N N 223 NAG O4 HO4 sing N N 224 NAG O6 HO6 sing N N 225 PHE N CA sing N N 226 PHE N H sing N N 227 PHE N H2 sing N N 228 PHE CA C sing N N 229 PHE CA CB sing N N 230 PHE CA HA sing N N 231 PHE C O doub N N 232 PHE C OXT sing N N 233 PHE CB CG sing N N 234 PHE CB HB2 sing N N 235 PHE CB HB3 sing N N 236 PHE CG CD1 doub Y N 237 PHE CG CD2 sing Y N 238 PHE CD1 CE1 sing Y N 239 PHE CD1 HD1 sing N N 240 PHE CD2 CE2 doub Y N 241 PHE CD2 HD2 sing N N 242 PHE CE1 CZ doub Y N 243 PHE CE1 HE1 sing N N 244 PHE CE2 CZ sing Y N 245 PHE CE2 HE2 sing N N 246 PHE CZ HZ sing N N 247 PHE OXT HXT sing N N 248 SER N CA sing N N 249 SER N H sing N N 250 SER N H2 sing N N 251 SER CA C sing N N 252 SER CA CB sing N N 253 SER CA HA sing N N 254 SER C O doub N N 255 SER C OXT sing N N 256 SER CB OG sing N N 257 SER CB HB2 sing N N 258 SER CB HB3 sing N N 259 SER OG HG sing N N 260 SER OXT HXT sing N N 261 THR N CA sing N N 262 THR N H sing N N 263 THR N H2 sing N N 264 THR CA C sing N N 265 THR CA CB sing N N 266 THR CA HA sing N N 267 THR C O doub N N 268 THR C OXT sing N N 269 THR CB OG1 sing N N 270 THR CB CG2 sing N N 271 THR CB HB sing N N 272 THR OG1 HG1 sing N N 273 THR CG2 HG21 sing N N 274 THR CG2 HG22 sing N N 275 THR CG2 HG23 sing N N 276 THR OXT HXT sing N N 277 TYR N CA sing N N 278 TYR N H sing N N 279 TYR N H2 sing N N 280 TYR CA C sing N N 281 TYR CA CB sing N N 282 TYR CA HA sing N N 283 TYR C O doub N N 284 TYR C OXT sing N N 285 TYR CB CG sing N N 286 TYR CB HB2 sing N N 287 TYR CB HB3 sing N N 288 TYR CG CD1 doub Y N 289 TYR CG CD2 sing Y N 290 TYR CD1 CE1 sing Y N 291 TYR CD1 HD1 sing N N 292 TYR CD2 CE2 doub Y N 293 TYR CD2 HD2 sing N N 294 TYR CE1 CZ doub Y N 295 TYR CE1 HE1 sing N N 296 TYR CE2 CZ sing Y N 297 TYR CE2 HE2 sing N N 298 TYR CZ OH sing N N 299 TYR OH HH sing N N 300 TYR OXT HXT sing N N 301 VAL N CA sing N N 302 VAL N H sing N N 303 VAL N H2 sing N N 304 VAL CA C sing N N 305 VAL CA CB sing N N 306 VAL CA HA sing N N 307 VAL C O doub N N 308 VAL C OXT sing N N 309 VAL CB CG1 sing N N 310 VAL CB CG2 sing N N 311 VAL CB HB sing N N 312 VAL CG1 HG11 sing N N 313 VAL CG1 HG12 sing N N 314 VAL CG1 HG13 sing N N 315 VAL CG2 HG21 sing N N 316 VAL CG2 HG22 sing N N 317 VAL CG2 HG23 sing N N 318 VAL OXT HXT sing N N 319 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -0.7 _em_helical_entity.axial_rise_per_subunit 4.926 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 3.6 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.details '3 shots per hole' _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 2 _em_image_recording.num_real_images 7270 # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? EMAN2 2.31 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU 3.5 MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND 4.1 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot 0.9.8.1 OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? RELION 3.1 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? RELION 3.1 CLASSIFICATION ? 11 1 ? ? RELION 3.1 RECONSTRUCTION ? 12 1 ? ? RELION 3.1 'MODEL REFINEMENT' ? 13 ? 1 ? PHENIX 20.1 # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Michael J. Fox Foundation' 'United States' MJFF-008121 1 'National Institutes of Health/Office of the Director' 'United States' OD020103-01 2 'National Institutes of Health/Office of the Director' 'United States' OD021685-01A1 3 'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' AG062418 4 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM114537 5 'Department of Energy (DOE, United States)' 'United States' DE-AC02-76SF00515 6 'Cancer Prevention and Research Institute of Texas (CPRIT)' 'United States' RP170644 7 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6A6B # _atom_sites.entry_id 9D5C _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #