HEADER DNA BINDING PROTEIN/DNA 13-AUG-24 9D5L TITLE THE C-TERMINAL DOMAIN OF THIOPSEUDOMONAS ALKALIPHILA TN7 TNSE BOUND TO TITLE 2 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TNSE, TN7 TRANSPOSITION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE DNA USED IN THE CRYSTALLIZATION CONDITION WAS A COMPND 10 3'-RECESSED DNA SUBSTRATE FORMED BY ANNEALING A 48-NT (5'- COMPND 11 GCAAGGCCGGAAACGTCACCAATGCAACGATCAGCCAACTAAACTAGG-3') AND A 24-NT (5'- COMPND 12 CCTAGTTTAGTTGGCTGATCGTTG-3') RESULTING IN A 24 BP DOUBLE-STRAND AND COMPND 13 24 NT SINGLE-STRAND PORTION. THE ASYMMETRIC UNIT CONTAINS ONE COMPND 14 MOLECULE OF TATNSE-CTD AND A DNA STRAND (12 NT) THAT FORMS A DNA COMPND 15 DUPLEX BY CRYSTAL SYMMETRY AND PROPAGATES AS A PSEUDO-CONTINUOUS COMPND 16 DUPLEX. THIS ARRANGEMENT RESULTED IN THE ASYMMETRIC UNIT REPRESENTING COMPND 17 AN AVERAGE OF THE PROTEIN BINDING ALONG THE ENTIRE DUPLEX, PRECLUDING COMPND 18 THE ASSIGNMENT OF THE DNA REGISTER AND WASHING OUT THE SIGNAL FOR THE COMPND 19 5' SINGLE-STRAND DNA TAIL. WE HAVE MODELLED A STRING OF T/A BASEPAIRS COMPND 20 TO REFLECT THE LACK OF REGISTRY. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THIOPSEUDOMONAS ALKALIPHILA; SOURCE 3 ORGANISM_TAXID: 1697053; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630 KEYWDS TN7, TARGET-SITE SELECTOR, DNA BINDING PROTEIN, DNA BINDING PROTEIN- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.S.KRISHNAN,A.GUARNE REVDAT 1 03-SEP-25 9D5L 0 JRNL AUTH S.S.KRISHNAN,Y.SHEN,T.B.O'HAGAN,L.A.MATTHEWS, JRNL AUTH 2 N.W.WEERASINGHE,R.GHIRLANDO,C.J.THIBODEAUX,A.GUARNE JRNL TITL ASYMMETRIC LOADING OF TNSE REGULATES TN7 TARGETING OF DNA JRNL TITL 2 REPLICATION STRUCTURES. JRNL REF NUCLEIC ACIDS RES. V. 53 2025 JRNL REFN ESSN 1362-4962 JRNL PMID 40498074 JRNL DOI 10.1093/NAR/GKAF472 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 7142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3800 - 4.7900 1.00 1404 157 0.2307 0.2765 REMARK 3 2 4.7900 - 3.8000 1.00 1291 143 0.1927 0.2353 REMARK 3 3 3.8000 - 3.3200 1.00 1259 139 0.2375 0.2703 REMARK 3 4 3.3200 - 3.0200 0.99 1242 139 0.2610 0.3111 REMARK 3 5 3.0200 - 2.8000 0.99 1232 136 0.3935 0.4306 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.498 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.526 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1581 REMARK 3 ANGLE : 0.558 2180 REMARK 3 CHIRALITY : 0.038 237 REMARK 3 PLANARITY : 0.004 237 REMARK 3 DIHEDRAL : 18.689 610 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9D5L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1000287345. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7169 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 38.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.18.2_3874 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM IODIDE, BIS-TRIS PROPANE, PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.50333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 147.00667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.25500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 183.75833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.75167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.50333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 147.00667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 183.75833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 110.25500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.75167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 36.75167 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 377 REMARK 465 ALA A 378 REMARK 465 THR A 379 REMARK 465 ASN A 380 REMARK 465 HIS A 538 REMARK 465 HIS A 539 REMARK 465 HIS A 540 REMARK 465 HIS A 541 REMARK 465 HIS A 542 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 450 HE2 HIS A 510 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 H61 DA C 1 O4 DT C 10 12555 1.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 9 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 401 -73.76 -84.47 REMARK 500 ARG A 420 42.53 -89.63 REMARK 500 SER A 444 137.78 -174.10 REMARK 500 SER A 488 66.61 60.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE DNA USED IN THE CRYSTALLIZATION CONDITION WAS A 3'-RECESSED DNA REMARK 999 SUBSTRATE FORMED BY ANNEALING A 48-NT (5'- REMARK 999 GCAAGGCCGGAAACGTCACCAATGCAACGATCAGCCAACTAAACTAGG-3') AND A 24-NT (5' REMARK 999 -CCTAGTTTAGTTGGCTGATCGTTG-3') RESULTING IN A 24 BP DOUBLE-STRAND REMARK 999 AND 24 NT SINGLE-STRAND PORTION. THE ASYMMETRIC UNIT CONTAINS ONE REMARK 999 MOLECULE OF TATNSE-CTD AND A DNA STRAND (12 NT) THAT FORMS A DNA REMARK 999 DUPLEX BY CRYSTAL SYMMETRY AND PROPAGATES AS A PSEUDO-CONTINUOUS REMARK 999 DUPLEX. THIS ARRANGEMENT RESULTED IN THE ASYMMETRIC UNIT REMARK 999 REPRESENTING AN AVERAGE OF THE PROTEIN BINDING ALONG THE ENTIRE REMARK 999 DUPLEX, PRECLUDING THE ASSIGNMENT OF THE DNA REGISTER AND WASHING REMARK 999 OUT THE SIGNAL FOR THE 5' SINGLE-STRAND DNA TAIL. WE HAVE MODELLED REMARK 999 A STRING OF T/A BASEPAIRS TO REFLECT THE LACK OF REGISTRY. DBREF 9D5L A 377 542 PDB 9D5L 9D5L 377 542 DBREF 9D5L C -1 10 PDB 9D5L 9D5L -1 10 SEQRES 1 A 166 ASP ALA THR ASN TYR ASN HIS VAL PHE ALA SER ARG PHE SEQRES 2 A 166 ALA ALA PHE ASN GLU LEU LEU SER ILE LEU LYS THR LYS SEQRES 3 A 166 PHE ARG CYS ARG VAL ILE PHE GLU GLU THR LEU VAL LEU SEQRES 4 A 166 PRO LYS VAL GLY ARG SER ARG LEU HIS LEU CYS LYS ASP SEQRES 5 A 166 GLY SER PRO ARG VAL ILE LYS ALA VAL GLY VAL TRP ARG SEQRES 6 A 166 ASN ALA SER GLU PHE ILE LEU LEU GLU VAL ASP ALA SER SEQRES 7 A 166 ASP GLY VAL LYS MET LEU SER THR LYS VAL LEU ILE GLY SEQRES 8 A 166 VAL ASN ARG GLU THR TRP GLN SER ASP PHE GLU ARG ILE SEQRES 9 A 166 ARG ARG GLY ILE VAL ARG ASN SER LEU ASN TRP PRO ASN SEQRES 10 A 166 GLY LEU LEU TYR GLN LEU TYR GLY LYS GLU GLY ASN ARG SEQRES 11 A 166 GLY VAL ASN HIS PRO LYS GLY LEU SER GLU LEU GLU VAL SEQRES 12 A 166 SER ARG GLU ASP MET GLU GLY TRP GLY GLU ARG LEU ILE SEQRES 13 A 166 ARG GLU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 12 DT DA DA DA DT DT DT DA DA DA DT DT HET PO4 A 601 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *19(H2 O) HELIX 1 AA1 SER A 387 LYS A 402 1 16 HELIX 2 AA2 THR A 472 ASN A 487 1 16 HELIX 3 AA3 PRO A 492 GLY A 501 1 10 HELIX 4 AA4 GLY A 513 GLU A 516 5 4 HELIX 5 AA5 SER A 520 GLU A 536 1 17 SHEET 1 AA1 2 HIS A 383 VAL A 384 0 SHEET 2 AA1 2 GLU A 518 VAL A 519 -1 O VAL A 519 N HIS A 383 SHEET 1 AA2 5 ARG A 406 VAL A 414 0 SHEET 2 AA2 5 VAL A 433 TRP A 440 -1 O GLY A 438 N ILE A 408 SHEET 3 AA2 5 GLU A 445 VAL A 451 -1 O PHE A 446 N VAL A 439 SHEET 4 AA2 5 THR A 462 LEU A 465 -1 O LEU A 465 N ILE A 447 SHEET 5 AA2 5 ASN A 505 VAL A 508 -1 O ARG A 506 N VAL A 464 CRYST1 63.770 63.770 220.510 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015681 0.009054 0.000000 0.00000 SCALE2 0.000000 0.018107 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004535 0.00000 TER 2572 HIS A 537 TER 2958 DT C 10 HETATM 2959 P PO4 A 601 -4.626 13.717 23.649 1.00 57.88 P HETATM 2960 O1 PO4 A 601 -3.259 13.063 23.573 1.00 50.97 O HETATM 2961 O2 PO4 A 601 -4.466 15.124 24.184 1.00 58.96 O HETATM 2962 O3 PO4 A 601 -5.269 13.747 22.303 1.00 60.39 O1- HETATM 2963 O4 PO4 A 601 -5.522 12.928 24.589 1.00 85.92 O HETATM 2964 O HOH A 701 -0.740 18.207 -9.002 1.00 52.83 O HETATM 2965 O HOH A 702 1.442 32.739 0.706 1.00 57.12 O HETATM 2966 O HOH A 703 -1.378 9.376 14.000 1.00 52.61 O HETATM 2967 O HOH A 704 -4.553 17.276 25.927 1.00 51.48 O HETATM 2968 O HOH A 705 5.663 20.344 12.940 1.00 37.31 O HETATM 2969 O HOH A 706 19.033 16.442 0.014 1.00 62.62 O HETATM 2970 O HOH A 707 26.276 14.678 5.879 1.00 56.33 O HETATM 2971 O HOH A 708 2.424 33.568 9.122 1.00 41.18 O HETATM 2972 O HOH A 709 16.718 30.468 4.760 1.00 41.26 O HETATM 2973 O HOH A 710 -2.008 31.439 22.236 1.00 54.23 O HETATM 2974 O HOH A 711 4.853 30.759 -4.693 1.00 48.62 O HETATM 2975 O HOH A 712 -8.968 3.374 5.105 1.00 60.28 O HETATM 2976 O HOH A 713 6.931 30.647 31.471 1.00 55.57 O HETATM 2977 O HOH A 714 -8.803 12.926 24.581 1.00 52.61 O HETATM 2978 O HOH A 715 -0.320 35.963 11.710 1.00 54.03 O HETATM 2979 O HOH A 716 -10.688 10.779 -1.392 1.00 58.22 O HETATM 2980 O HOH A 717 -4.071 23.168 -12.788 1.00 69.87 O HETATM 2981 O HOH A 718 2.280 32.831 26.555 1.00 54.75 O HETATM 2982 O HOH A 719 -10.754 22.323 -9.884 1.00 40.52 O CONECT 2959 2960 2961 2962 2963 CONECT 2960 2959 CONECT 2961 2959 CONECT 2962 2959 CONECT 2963 2959 MASTER 330 0 1 5 7 0 0 6 1547 2 5 14 END