data_9D70 # _entry.id 9D70 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.403 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9D70 pdb_00009d70 10.2210/pdb9d70/pdb WWPDB D_1000287402 ? ? EMDB EMD-46599 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-01-22 ? 2 'EM metadata' 1 0 2025-01-22 ? 3 'Half map' 1 0 2025-01-22 1 4 'Half map' 1 0 2025-01-22 2 5 Image 1 0 2025-01-22 ? 6 'Primary map' 1 0 2025-01-22 ? 7 'Structure model' 1 1 2025-02-12 ? 8 'Half map' 1 0 2025-01-22 1 9 'Half map' 1 0 2025-01-22 2 10 Image 1 0 2025-01-22 ? 11 'Primary map' 1 0 2025-01-22 ? 12 'Structure model' 1 2 2025-05-28 ? 13 'EM metadata' 1 1 2025-05-28 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Half map' repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 Image repository 'Initial release' ? ? 6 6 'Primary map' repository 'Initial release' ? ? 7 8 'Half map' repository 'Initial release' ? ? 8 9 'Half map' repository 'Initial release' ? ? 9 10 Image repository 'Initial release' ? ? 10 11 'Primary map' repository 'Initial release' ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 7 'Structure model' 'Data collection' 2 7 'Structure model' 'Database references' 3 12 'Structure model' 'Data collection' 4 13 'EM metadata' 'Data processing' 5 13 'EM metadata' 'Experimental summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 7 'Structure model' citation 2 7 'Structure model' citation_author 3 7 'Structure model' em_admin 4 12 'Structure model' em_admin 5 12 'Structure model' em_software 6 13 'EM metadata' em_admin 7 13 'EM metadata' em_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 7 'Structure model' '_citation.journal_volume' 2 7 'Structure model' '_citation.page_first' 3 7 'Structure model' '_citation.page_last' 4 7 'Structure model' '_citation_author.identifier_ORCID' 5 7 'Structure model' '_em_admin.last_update' 6 12 'Structure model' '_em_admin.last_update' 7 12 'Structure model' '_em_software.name' 8 13 'EM metadata' '_em_admin.last_update' 9 13 'EM metadata' '_em_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9D70 _pdbx_database_status.recvd_initial_deposition_date 2024-08-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM of helical fibers formed by two peptides Pyn-K6 and Pyn-(EY)3' _pdbx_database_related.db_id EMD-46599 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email fw2@uab.edu _pdbx_contact_author.name_first Fengbin _pdbx_contact_author.name_last Wang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-1008-663X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zia, A.' 1 ? 'Qiao, Y.' 2 ? 'Xu, B.' 3 ? 'Wang, F.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 147 _citation.language ? _citation.page_first 2978 _citation.page_last 2983 _citation.title 'Context-Dependent Heterotypic Assemblies of Intrinsically Disordered Peptides.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.4c12150 _citation.pdbx_database_id_PubMed 39808585 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Qiao, Y.' 1 ? primary 'Zia, A.' 2 ? primary 'Wu, G.' 3 ? primary 'Liu, Z.' 4 ? primary 'Guo, J.' 5 ? primary 'Chu, M.' 6 ? primary 'He, H.' 7 ? primary 'Wang, F.' 8 ? primary 'Xu, B.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn PYR-K6 1035.366 1 ? ? ? ? 2 polymer syn PYR-EY3 1137.150 1 ? ? ? ? 3 non-polymer syn '(pyren-1-yl)acetic acid' 260.287 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes '(OG9)KKKKKK' XKKKKKK B ? 2 'polypeptide(L)' no yes '(OG9)EYEYEY' XEYEYEY C ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name '(pyren-1-yl)acetic acid' _pdbx_entity_nonpoly.comp_id OG9 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 OG9 n 1 2 LYS n 1 3 LYS n 1 4 LYS n 1 5 LYS n 1 6 LYS n 1 7 LYS n 2 1 OG9 n 2 2 GLU n 2 3 TYR n 2 4 GLU n 2 5 TYR n 2 6 GLU n 2 7 TYR n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 7 'synthetic construct' ? 32630 ? 2 1 sample 1 7 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 OG9 non-polymer . '(pyren-1-yl)acetic acid' ? 'C18 H12 O2' 260.287 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 OG9 1 1 1 OG9 PYR B . n A 1 2 LYS 2 2 2 LYS LYS B . n A 1 3 LYS 3 3 3 LYS LYS B . n A 1 4 LYS 4 4 4 LYS LYS B . n A 1 5 LYS 5 5 5 LYS LYS B . n A 1 6 LYS 6 6 6 LYS LYS B . n A 1 7 LYS 7 7 7 LYS LYS B . n B 2 1 OG9 1 1 1 OG9 PYR C . n B 2 2 GLU 2 2 2 GLU GLU C . n B 2 3 TYR 3 3 3 TYR TYR C . n B 2 4 GLU 4 4 4 GLU GLU C . n B 2 5 TYR 5 5 5 TYR TYR C . n B 2 6 GLU 6 6 6 GLU GLU C . n B 2 7 TYR 7 7 7 TYR TYR C . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id OG9 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id OG9 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id OG9 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id OG9 _pdbx_nonpoly_scheme.auth_mon_id PYR _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag N _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id B _pdbx_unobs_or_zero_occ_atoms.auth_comp_id OG9 _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 101 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id O1 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id C _pdbx_unobs_or_zero_occ_atoms.label_comp_id OG9 _pdbx_unobs_or_zero_occ_atoms.label_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.label_atom_id O1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9D70 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 9D70 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.004 ? 22080 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.929 ? 29520 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 12.016 ? 2280 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.066 ? 1440 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.005 ? 2280 ? f_plane_restr ? ? # _struct.entry_id 9D70 _struct.title 'Cryo-EM of helical fibers formed by two peptides Pyn-K6 and Pyn-(EY)3' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9D70 _struct_keywords.text 'peptide fiber, heterotypic peptide, helical polymer, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 9D70 9D70 ? 1 ? 1 2 PDB 9D70 9D70 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9D70 B 1 ? 7 ? 9D70 1 ? 7 ? 1 7 2 2 9D70 C 1 ? 7 ? 9D70 1 ? 7 ? 1 7 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? 240-meric 240 2 'helical asymmetric unit' ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-120)' A,B,C 2 1 A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.000000 0.000000 0.000000 0.00000 0.000000 1.000000 -0.000000 0.00000 0.000000 -0.000000 1.000000 0.00000 2 'helical symmetry operation' ? ? -0.518027 -0.855364 0.000000 -0.00000 0.855364 -0.518027 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -141.00000 3 'helical symmetry operation' ? ? -0.456477 -0.889735 0.000000 -0.00000 0.889735 -0.456477 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -136.30000 4 'helical symmetry operation' ? ? -0.392658 -0.919684 0.000000 -0.00000 0.919684 -0.392658 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -131.60000 5 'helical symmetry operation' ? ? -0.326888 -0.945063 0.000000 -0.00000 0.945063 -0.326888 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -126.90000 6 'helical symmetry operation' ? ? -0.259493 -0.965745 0.000000 -0.00000 0.965745 -0.259493 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -122.20000 7 'helical symmetry operation' ? ? -0.190809 -0.981627 0.000000 -0.00000 0.981627 -0.190809 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -117.50000 8 'helical symmetry operation' ? ? -0.121176 -0.992631 0.000000 -0.00000 0.992631 -0.121176 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -112.80000 9 'helical symmetry operation' ? ? -0.050942 -0.998702 0.000000 -0.00000 0.998702 -0.050942 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -108.10000 10 'helical symmetry operation' ? ? 0.019546 -0.999809 0.000000 -0.00000 0.999809 0.019546 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -103.40000 11 'helical symmetry operation' ? ? 0.089937 -0.995947 0.000000 -0.00000 0.995947 0.089937 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -98.70000 12 'helical symmetry operation' ? ? 0.159881 -0.987136 0.000000 -0.00000 0.987136 0.159881 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -94.00000 13 'helical symmetry operation' ? ? 0.229031 -0.973419 0.000000 -0.00000 0.973419 0.229031 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -89.30000 14 'helical symmetry operation' ? ? 0.297042 -0.954865 0.000000 -0.00000 0.954865 0.297042 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -84.60000 15 'helical symmetry operation' ? ? 0.363576 -0.931564 0.000000 -0.00000 0.931564 0.363576 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -79.90000 16 'helical symmetry operation' ? ? 0.428304 -0.903635 0.000000 -0.00000 0.903635 0.428304 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -75.20000 17 'helical symmetry operation' ? ? 0.490904 -0.871214 0.000000 -0.00000 0.871214 0.490904 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -70.50000 18 'helical symmetry operation' ? ? 0.551063 -0.834463 0.000000 -0.00000 0.834463 0.551063 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -65.80000 19 'helical symmetry operation' ? ? 0.608484 -0.793566 0.000000 -0.00000 0.793566 0.608484 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -61.10000 20 'helical symmetry operation' ? ? 0.662881 -0.748724 0.000000 -0.00000 0.748724 0.662881 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -56.40000 21 'helical symmetry operation' ? ? 0.713984 -0.700162 0.000000 -0.00000 0.700162 0.713984 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -51.70000 22 'helical symmetry operation' ? ? 0.761538 -0.648120 0.000000 -0.00000 0.648120 0.761538 -0.000000 0.00000 -0.000000 -0.000000 1.000000 -47.00000 23 'helical symmetry operation' ? ? 0.805308 -0.592857 0.000000 -0.00000 0.592857 0.805308 -0.000000 0.00000 0.000000 -0.000000 1.000000 -42.30000 24 'helical symmetry operation' ? ? 0.845075 -0.534647 0.000000 -0.00000 0.534647 0.845075 -0.000000 0.00000 0.000000 -0.000000 1.000000 -37.60000 25 'helical symmetry operation' ? ? 0.880643 -0.473781 0.000000 -0.00000 0.473781 0.880643 -0.000000 0.00000 0.000000 -0.000000 1.000000 -32.90000 26 'helical symmetry operation' ? ? 0.911834 -0.410560 0.000000 -0.00000 0.410560 0.911834 -0.000000 0.00000 0.000000 -0.000000 1.000000 -28.20000 27 'helical symmetry operation' ? ? 0.938493 -0.345298 0.000000 -0.00000 0.345298 0.938493 -0.000000 0.00000 0.000000 -0.000000 1.000000 -23.50000 28 'helical symmetry operation' ? ? 0.960488 -0.278321 0.000000 -0.00000 0.278321 0.960488 -0.000000 0.00000 0.000000 -0.000000 1.000000 -18.80000 29 'helical symmetry operation' ? ? 0.977710 -0.209960 0.000000 -0.00000 0.209960 0.977710 -0.000000 0.00000 0.000000 -0.000000 1.000000 -14.10000 30 'helical symmetry operation' ? ? 0.990073 -0.140556 0.000000 -0.00000 0.140556 0.990073 -0.000000 0.00000 0.000000 -0.000000 1.000000 -9.40000 31 'helical symmetry operation' ? ? 0.997515 -0.070453 0.000000 -0.00000 0.070453 0.997515 -0.000000 0.00000 0.000000 -0.000000 1.000000 -4.70000 32 'helical symmetry operation' ? ? 0.997515 0.070453 0.000000 0.00000 -0.070453 0.997515 -0.000000 -0.00000 0.000000 -0.000000 1.000000 4.70000 33 'helical symmetry operation' ? ? 0.990073 0.140556 0.000000 0.00000 -0.140556 0.990073 -0.000000 -0.00000 0.000000 -0.000000 1.000000 9.40000 34 'helical symmetry operation' ? ? 0.977710 0.209960 0.000000 0.00000 -0.209960 0.977710 -0.000000 -0.00000 0.000000 -0.000000 1.000000 14.10000 35 'helical symmetry operation' ? ? 0.960488 0.278321 0.000000 0.00000 -0.278321 0.960488 -0.000000 -0.00000 0.000000 -0.000000 1.000000 18.80000 36 'helical symmetry operation' ? ? 0.938493 0.345298 0.000000 0.00000 -0.345298 0.938493 -0.000000 -0.00000 0.000000 -0.000000 1.000000 23.50000 37 'helical symmetry operation' ? ? 0.911834 0.410560 0.000000 0.00000 -0.410560 0.911834 -0.000000 -0.00000 0.000000 -0.000000 1.000000 28.20000 38 'helical symmetry operation' ? ? 0.880643 0.473781 0.000000 0.00000 -0.473781 0.880643 -0.000000 -0.00000 0.000000 -0.000000 1.000000 32.90000 39 'helical symmetry operation' ? ? 0.845075 0.534647 0.000000 0.00000 -0.534647 0.845075 -0.000000 -0.00000 0.000000 -0.000000 1.000000 37.60000 40 'helical symmetry operation' ? ? 0.805308 0.592857 0.000000 0.00000 -0.592857 0.805308 -0.000000 -0.00000 0.000000 -0.000000 1.000000 42.30000 41 'helical symmetry operation' ? ? 0.761538 0.648120 -0.000000 0.00000 -0.648120 0.761538 -0.000000 -0.00000 0.000000 -0.000000 1.000000 47.00000 42 'helical symmetry operation' ? ? 0.713984 0.700162 -0.000000 0.00000 -0.700162 0.713984 -0.000000 -0.00000 0.000000 -0.000000 1.000000 51.70000 43 'helical symmetry operation' ? ? 0.662881 0.748724 -0.000000 0.00000 -0.748724 0.662881 -0.000000 -0.00000 0.000000 -0.000000 1.000000 56.40000 44 'helical symmetry operation' ? ? 0.608484 0.793566 -0.000000 0.00000 -0.793566 0.608484 -0.000000 -0.00000 0.000000 -0.000000 1.000000 61.10000 45 'helical symmetry operation' ? ? 0.551063 0.834463 -0.000000 0.00000 -0.834463 0.551063 -0.000000 -0.00000 0.000000 -0.000000 1.000000 65.80000 46 'helical symmetry operation' ? ? 0.490904 0.871214 -0.000000 0.00000 -0.871214 0.490904 -0.000000 -0.00000 0.000000 -0.000000 1.000000 70.50000 47 'helical symmetry operation' ? ? 0.428304 0.903635 -0.000000 0.00000 -0.903635 0.428304 -0.000000 -0.00000 0.000000 -0.000000 1.000000 75.20000 48 'helical symmetry operation' ? ? 0.363576 0.931564 -0.000000 0.00000 -0.931564 0.363576 -0.000000 -0.00000 0.000000 -0.000000 1.000000 79.90000 49 'helical symmetry operation' ? ? 0.297042 0.954865 -0.000000 0.00000 -0.954865 0.297042 -0.000000 -0.00000 0.000000 -0.000000 1.000000 84.60000 50 'helical symmetry operation' ? ? 0.229031 0.973419 -0.000000 0.00000 -0.973419 0.229031 -0.000000 -0.00000 0.000000 -0.000000 1.000000 89.30000 51 'helical symmetry operation' ? ? 0.159881 0.987136 -0.000000 0.00000 -0.987136 0.159881 -0.000000 -0.00000 0.000000 -0.000000 1.000000 94.00000 52 'helical symmetry operation' ? ? 0.089937 0.995947 -0.000000 0.00000 -0.995947 0.089937 -0.000000 -0.00000 0.000000 -0.000000 1.000000 98.70000 53 'helical symmetry operation' ? ? 0.019546 0.999809 -0.000000 0.00000 -0.999809 0.019546 -0.000000 -0.00000 0.000000 -0.000000 1.000000 103.40000 54 'helical symmetry operation' ? ? -0.050942 0.998702 -0.000000 0.00000 -0.998702 -0.050942 -0.000000 -0.00000 0.000000 -0.000000 1.000000 108.10000 55 'helical symmetry operation' ? ? -0.121176 0.992631 -0.000000 0.00000 -0.992631 -0.121176 -0.000000 -0.00000 0.000000 -0.000000 1.000000 112.80000 56 'helical symmetry operation' ? ? -0.190809 0.981627 -0.000000 0.00000 -0.981627 -0.190809 -0.000000 -0.00000 0.000000 -0.000000 1.000000 117.50000 57 'helical symmetry operation' ? ? -0.259493 0.965745 -0.000000 0.00000 -0.965745 -0.259493 -0.000000 -0.00000 0.000000 -0.000000 1.000000 122.20000 58 'helical symmetry operation' ? ? -0.326888 0.945063 -0.000000 0.00000 -0.945063 -0.326888 -0.000000 -0.00000 0.000000 -0.000000 1.000000 126.90000 59 'helical symmetry operation' ? ? -0.392658 0.919684 -0.000000 0.00000 -0.919684 -0.392658 -0.000000 -0.00000 0.000000 -0.000000 1.000000 131.60000 60 'helical symmetry operation' ? ? -0.456477 0.889735 -0.000000 0.00000 -0.889735 -0.456477 -0.000000 -0.00000 0.000000 -0.000000 1.000000 136.30000 61 'helical symmetry operation' ? ? 0.518027 0.855364 -0.000000 -0.00000 -0.855364 0.518027 -0.000000 0.00000 0.000000 -0.000000 1.000000 -141.00000 62 'helical symmetry operation' ? ? 0.456477 0.889735 -0.000000 -0.00000 -0.889735 0.456477 -0.000000 0.00000 0.000000 -0.000000 1.000000 -136.30000 63 'helical symmetry operation' ? ? 0.392658 0.919684 -0.000000 -0.00000 -0.919684 0.392658 -0.000000 0.00000 0.000000 -0.000000 1.000000 -131.60000 64 'helical symmetry operation' ? ? 0.326888 0.945063 -0.000000 -0.00000 -0.945063 0.326888 -0.000000 0.00000 0.000000 -0.000000 1.000000 -126.90000 65 'helical symmetry operation' ? ? 0.259493 0.965745 -0.000000 -0.00000 -0.965745 0.259493 -0.000000 0.00000 0.000000 -0.000000 1.000000 -122.20000 66 'helical symmetry operation' ? ? 0.190809 0.981627 -0.000000 -0.00000 -0.981627 0.190809 -0.000000 0.00000 0.000000 -0.000000 1.000000 -117.50000 67 'helical symmetry operation' ? ? 0.121176 0.992631 -0.000000 -0.00000 -0.992631 0.121176 -0.000000 0.00000 0.000000 -0.000000 1.000000 -112.80000 68 'helical symmetry operation' ? ? 0.050942 0.998702 -0.000000 -0.00000 -0.998702 0.050942 -0.000000 0.00000 0.000000 -0.000000 1.000000 -108.10000 69 'helical symmetry operation' ? ? -0.019546 0.999809 -0.000000 -0.00000 -0.999809 -0.019546 -0.000000 0.00000 0.000000 -0.000000 1.000000 -103.40000 70 'helical symmetry operation' ? ? -0.089937 0.995947 -0.000000 -0.00000 -0.995947 -0.089937 -0.000000 0.00000 0.000000 -0.000000 1.000000 -98.70000 71 'helical symmetry operation' ? ? -0.159881 0.987136 -0.000000 -0.00000 -0.987136 -0.159881 -0.000000 0.00000 0.000000 -0.000000 1.000000 -94.00000 72 'helical symmetry operation' ? ? -0.229031 0.973419 -0.000000 -0.00000 -0.973419 -0.229031 -0.000000 0.00000 0.000000 -0.000000 1.000000 -89.30000 73 'helical symmetry operation' ? ? -0.297042 0.954865 -0.000000 -0.00000 -0.954865 -0.297042 -0.000000 0.00000 0.000000 -0.000000 1.000000 -84.60000 74 'helical symmetry operation' ? ? -0.363576 0.931564 -0.000000 -0.00000 -0.931564 -0.363576 -0.000000 0.00000 0.000000 -0.000000 1.000000 -79.90000 75 'helical symmetry operation' ? ? -0.428304 0.903635 -0.000000 -0.00000 -0.903635 -0.428304 -0.000000 0.00000 0.000000 -0.000000 1.000000 -75.20000 76 'helical symmetry operation' ? ? -0.490904 0.871214 -0.000000 -0.00000 -0.871214 -0.490904 -0.000000 0.00000 0.000000 -0.000000 1.000000 -70.50000 77 'helical symmetry operation' ? ? -0.551063 0.834463 -0.000000 -0.00000 -0.834463 -0.551063 -0.000000 0.00000 0.000000 -0.000000 1.000000 -65.80000 78 'helical symmetry operation' ? ? -0.608484 0.793566 -0.000000 -0.00000 -0.793566 -0.608484 -0.000000 0.00000 0.000000 -0.000000 1.000000 -61.10000 79 'helical symmetry operation' ? ? -0.662881 0.748724 -0.000000 -0.00000 -0.748724 -0.662881 -0.000000 0.00000 0.000000 -0.000000 1.000000 -56.40000 80 'helical symmetry operation' ? ? -0.713984 0.700162 -0.000000 -0.00000 -0.700162 -0.713984 -0.000000 0.00000 0.000000 -0.000000 1.000000 -51.70000 81 'helical symmetry operation' ? ? -0.761538 0.648120 -0.000000 -0.00000 -0.648120 -0.761538 -0.000000 0.00000 0.000000 -0.000000 1.000000 -47.00000 82 'helical symmetry operation' ? ? -0.805308 0.592857 -0.000000 -0.00000 -0.592857 -0.805308 -0.000000 0.00000 0.000000 0.000000 1.000000 -42.30000 83 'helical symmetry operation' ? ? -0.845075 0.534647 -0.000000 -0.00000 -0.534647 -0.845075 -0.000000 0.00000 0.000000 0.000000 1.000000 -37.60000 84 'helical symmetry operation' ? ? -0.880643 0.473781 -0.000000 -0.00000 -0.473781 -0.880643 -0.000000 0.00000 0.000000 0.000000 1.000000 -32.90000 85 'helical symmetry operation' ? ? -0.911834 0.410560 -0.000000 0.00000 -0.410560 -0.911834 -0.000000 0.00000 0.000000 0.000000 1.000000 -28.20000 86 'helical symmetry operation' ? ? -0.938493 0.345298 -0.000000 0.00000 -0.345298 -0.938493 -0.000000 0.00000 0.000000 0.000000 1.000000 -23.50000 87 'helical symmetry operation' ? ? -0.960488 0.278321 -0.000000 0.00000 -0.278321 -0.960488 -0.000000 0.00000 0.000000 0.000000 1.000000 -18.80000 88 'helical symmetry operation' ? ? -0.977710 0.209960 -0.000000 0.00000 -0.209960 -0.977710 -0.000000 0.00000 0.000000 0.000000 1.000000 -14.10000 89 'helical symmetry operation' ? ? -0.990073 0.140556 -0.000000 0.00000 -0.140556 -0.990073 -0.000000 0.00000 0.000000 0.000000 1.000000 -9.40000 90 'helical symmetry operation' ? ? -0.997515 0.070453 -0.000000 0.00000 -0.070453 -0.997515 -0.000000 0.00000 0.000000 0.000000 1.000000 -4.70000 91 'helical symmetry operation' ? ? -1.000000 -0.000000 -0.000000 0.00000 -0.000000 -1.000000 0.000000 0.00000 -0.000000 0.000000 1.000000 0.00000 92 'helical symmetry operation' ? ? -0.997515 -0.070453 0.000000 0.00000 0.070453 -0.997515 0.000000 -0.00000 -0.000000 -0.000000 1.000000 4.70000 93 'helical symmetry operation' ? ? -0.990073 -0.140556 0.000000 0.00000 0.140556 -0.990073 0.000000 -0.00000 -0.000000 -0.000000 1.000000 9.40000 94 'helical symmetry operation' ? ? -0.977710 -0.209960 0.000000 0.00000 0.209960 -0.977710 0.000000 -0.00000 -0.000000 -0.000000 1.000000 14.10000 95 'helical symmetry operation' ? ? -0.960488 -0.278321 0.000000 0.00000 0.278321 -0.960488 0.000000 -0.00000 -0.000000 -0.000000 1.000000 18.80000 96 'helical symmetry operation' ? ? -0.938493 -0.345298 0.000000 0.00000 0.345298 -0.938493 0.000000 -0.00000 -0.000000 -0.000000 1.000000 23.50000 97 'helical symmetry operation' ? ? -0.911834 -0.410560 0.000000 0.00000 0.410560 -0.911834 0.000000 -0.00000 -0.000000 -0.000000 1.000000 28.20000 98 'helical symmetry operation' ? ? -0.880643 -0.473781 0.000000 0.00000 0.473781 -0.880643 0.000000 -0.00000 -0.000000 -0.000000 1.000000 32.90000 99 'helical symmetry operation' ? ? -0.845075 -0.534647 0.000000 0.00000 0.534647 -0.845075 0.000000 -0.00000 -0.000000 -0.000000 1.000000 37.60000 100 'helical symmetry operation' ? ? -0.805308 -0.592857 0.000000 0.00000 0.592857 -0.805308 0.000000 -0.00000 -0.000000 -0.000000 1.000000 42.30000 101 'helical symmetry operation' ? ? -0.761538 -0.648120 0.000000 0.00000 0.648120 -0.761538 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 47.00000 102 'helical symmetry operation' ? ? -0.713984 -0.700162 0.000000 0.00000 0.700162 -0.713984 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 51.70000 103 'helical symmetry operation' ? ? -0.662881 -0.748724 0.000000 0.00000 0.748724 -0.662881 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 56.40000 104 'helical symmetry operation' ? ? -0.608484 -0.793566 0.000000 0.00000 0.793566 -0.608484 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 61.10000 105 'helical symmetry operation' ? ? -0.551063 -0.834463 0.000000 0.00000 0.834463 -0.551063 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 65.80000 106 'helical symmetry operation' ? ? -0.490904 -0.871214 0.000000 0.00000 0.871214 -0.490904 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 70.50000 107 'helical symmetry operation' ? ? -0.428304 -0.903635 0.000000 0.00000 0.903635 -0.428304 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 75.20000 108 'helical symmetry operation' ? ? -0.363576 -0.931564 0.000000 0.00000 0.931564 -0.363576 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 79.90000 109 'helical symmetry operation' ? ? -0.297042 -0.954865 0.000000 0.00000 0.954865 -0.297042 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 84.60000 110 'helical symmetry operation' ? ? -0.229031 -0.973419 0.000000 0.00000 0.973419 -0.229031 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 89.30000 111 'helical symmetry operation' ? ? -0.159881 -0.987136 0.000000 0.00000 0.987136 -0.159881 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 94.00000 112 'helical symmetry operation' ? ? -0.089937 -0.995947 0.000000 0.00000 0.995947 -0.089937 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 98.70000 113 'helical symmetry operation' ? ? -0.019546 -0.999809 0.000000 0.00000 0.999809 -0.019546 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 103.40000 114 'helical symmetry operation' ? ? 0.050942 -0.998702 0.000000 0.00000 0.998702 0.050942 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 108.10000 115 'helical symmetry operation' ? ? 0.121176 -0.992631 0.000000 0.00000 0.992631 0.121176 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 112.80000 116 'helical symmetry operation' ? ? 0.190809 -0.981627 0.000000 0.00000 0.981627 0.190809 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 117.50000 117 'helical symmetry operation' ? ? 0.259493 -0.965745 0.000000 0.00000 0.965745 0.259493 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 122.20000 118 'helical symmetry operation' ? ? 0.326888 -0.945063 0.000000 0.00000 0.945063 0.326888 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 126.90000 119 'helical symmetry operation' ? ? 0.392658 -0.919684 0.000000 0.00000 0.919684 0.392658 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 131.60000 120 'helical symmetry operation' ? ? 0.456477 -0.889735 0.000000 0.00000 0.889735 0.456477 -0.000000 -0.00000 -0.000000 -0.000000 1.000000 136.30000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A OG9 1 C ? ? ? 1_555 A LYS 2 N ? ? B OG9 1 B LYS 2 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale2 covale both ? B OG9 1 C ? ? ? 1_555 B GLU 2 N ? ? C OG9 1 C GLU 2 1_555 ? ? ? ? ? ? ? 1.430 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 OG9 A 1 ? . . . . OG9 B 1 ? 1_555 . . . . . . . ? 1 OG9 None 'Non-standard residue' 2 OG9 B 1 ? . . . . OG9 C 1 ? 1_555 . . . . . . . ? 1 OG9 None 'Non-standard residue' # _pdbx_entry_details.entry_id 9D70 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA B OG9 1 ? ? C B OG9 1 ? ? N B LYS 2 ? ? 150.32 117.20 33.12 2.20 Y 2 1 O B OG9 1 ? ? C B OG9 1 ? ? N B LYS 2 ? ? 90.05 122.70 -32.65 1.60 Y 3 1 C B OG9 1 ? ? N B LYS 2 ? ? CA B LYS 2 ? ? 141.31 121.70 19.61 2.50 Y 4 1 C C OG9 1 ? ? N C GLU 2 ? ? CA C GLU 2 ? ? 93.16 121.70 -28.54 2.50 Y # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9D70 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9D70 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 1677085 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 10 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Pyn-K6 + Pyn-EY3 fiber' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2' # _em_imaging.entry_id 9D70 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 9D70 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9D70 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal GLU N N N N 1 GLU CA C N S 2 GLU C C N N 3 GLU O O N N 4 GLU CB C N N 5 GLU CG C N N 6 GLU CD C N N 7 GLU OE1 O N N 8 GLU OE2 O N N 9 GLU OXT O N N 10 GLU H H N N 11 GLU H2 H N N 12 GLU HA H N N 13 GLU HB2 H N N 14 GLU HB3 H N N 15 GLU HG2 H N N 16 GLU HG3 H N N 17 GLU HE2 H N N 18 GLU HXT H N N 19 LYS N N N N 20 LYS CA C N S 21 LYS C C N N 22 LYS O O N N 23 LYS CB C N N 24 LYS CG C N N 25 LYS CD C N N 26 LYS CE C N N 27 LYS NZ N N N 28 LYS OXT O N N 29 LYS H H N N 30 LYS H2 H N N 31 LYS HA H N N 32 LYS HB2 H N N 33 LYS HB3 H N N 34 LYS HG2 H N N 35 LYS HG3 H N N 36 LYS HD2 H N N 37 LYS HD3 H N N 38 LYS HE2 H N N 39 LYS HE3 H N N 40 LYS HZ1 H N N 41 LYS HZ2 H N N 42 LYS HZ3 H N N 43 LYS HXT H N N 44 OG9 CA C N N 45 OG9 C C N N 46 OG9 O O N N 47 OG9 C05 C Y N 48 OG9 C06 C Y N 49 OG9 C07 C Y N 50 OG9 C08 C Y N 51 OG9 C09 C Y N 52 OG9 C10 C Y N 53 OG9 C11 C Y N 54 OG9 C12 C Y N 55 OG9 C13 C Y N 56 OG9 C14 C Y N 57 OG9 C15 C Y N 58 OG9 C16 C Y N 59 OG9 C17 C Y N 60 OG9 C18 C Y N 61 OG9 C19 C Y N 62 OG9 C20 C Y N 63 OG9 H1 H N N 64 OG9 H2 H N N 65 OG9 H4 H N N 66 OG9 H5 H N N 67 OG9 H6 H N N 68 OG9 H7 H N N 69 OG9 H8 H N N 70 OG9 H9 H N N 71 OG9 H10 H N N 72 OG9 H11 H N N 73 OG9 H12 H N N 74 OG9 O1 O N N 75 OG9 H3 H N N 76 TYR N N N N 77 TYR CA C N S 78 TYR C C N N 79 TYR O O N N 80 TYR CB C N N 81 TYR CG C Y N 82 TYR CD1 C Y N 83 TYR CD2 C Y N 84 TYR CE1 C Y N 85 TYR CE2 C Y N 86 TYR CZ C Y N 87 TYR OH O N N 88 TYR OXT O N N 89 TYR H H N N 90 TYR H2 H N N 91 TYR HA H N N 92 TYR HB2 H N N 93 TYR HB3 H N N 94 TYR HD1 H N N 95 TYR HD2 H N N 96 TYR HE1 H N N 97 TYR HE2 H N N 98 TYR HH H N N 99 TYR HXT H N N 100 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLU N CA sing N N 1 GLU N H sing N N 2 GLU N H2 sing N N 3 GLU CA C sing N N 4 GLU CA CB sing N N 5 GLU CA HA sing N N 6 GLU C O doub N N 7 GLU C OXT sing N N 8 GLU CB CG sing N N 9 GLU CB HB2 sing N N 10 GLU CB HB3 sing N N 11 GLU CG CD sing N N 12 GLU CG HG2 sing N N 13 GLU CG HG3 sing N N 14 GLU CD OE1 doub N N 15 GLU CD OE2 sing N N 16 GLU OE2 HE2 sing N N 17 GLU OXT HXT sing N N 18 LYS N CA sing N N 19 LYS N H sing N N 20 LYS N H2 sing N N 21 LYS CA C sing N N 22 LYS CA CB sing N N 23 LYS CA HA sing N N 24 LYS C O doub N N 25 LYS C OXT sing N N 26 LYS CB CG sing N N 27 LYS CB HB2 sing N N 28 LYS CB HB3 sing N N 29 LYS CG CD sing N N 30 LYS CG HG2 sing N N 31 LYS CG HG3 sing N N 32 LYS CD CE sing N N 33 LYS CD HD2 sing N N 34 LYS CD HD3 sing N N 35 LYS CE NZ sing N N 36 LYS CE HE2 sing N N 37 LYS CE HE3 sing N N 38 LYS NZ HZ1 sing N N 39 LYS NZ HZ2 sing N N 40 LYS NZ HZ3 sing N N 41 LYS OXT HXT sing N N 42 OG9 CA C sing N N 43 OG9 CA C05 sing N N 44 OG9 C O doub N N 45 OG9 C19 C20 doub Y N 46 OG9 C19 C18 sing Y N 47 OG9 C05 C18 doub Y N 48 OG9 C05 C06 sing Y N 49 OG9 C20 C15 sing Y N 50 OG9 C18 C17 sing Y N 51 OG9 C06 C07 doub Y N 52 OG9 C15 C14 doub Y N 53 OG9 C15 C16 sing Y N 54 OG9 C17 C16 doub Y N 55 OG9 C17 C08 sing Y N 56 OG9 C14 C13 sing Y N 57 OG9 C07 C08 sing Y N 58 OG9 C16 C11 sing Y N 59 OG9 C08 C09 doub Y N 60 OG9 C13 C12 doub Y N 61 OG9 C11 C12 sing Y N 62 OG9 C11 C10 doub Y N 63 OG9 C09 C10 sing Y N 64 OG9 CA H1 sing N N 65 OG9 CA H2 sing N N 66 OG9 C06 H4 sing N N 67 OG9 C07 H5 sing N N 68 OG9 C09 H6 sing N N 69 OG9 C10 H7 sing N N 70 OG9 C12 H8 sing N N 71 OG9 C13 H9 sing N N 72 OG9 C14 H10 sing N N 73 OG9 C19 H11 sing N N 74 OG9 C20 H12 sing N N 75 OG9 C O1 sing N N 76 OG9 O1 H3 sing N N 77 TYR N CA sing N N 78 TYR N H sing N N 79 TYR N H2 sing N N 80 TYR CA C sing N N 81 TYR CA CB sing N N 82 TYR CA HA sing N N 83 TYR C O doub N N 84 TYR C OXT sing N N 85 TYR CB CG sing N N 86 TYR CB HB2 sing N N 87 TYR CB HB3 sing N N 88 TYR CG CD1 doub Y N 89 TYR CG CD2 sing Y N 90 TYR CD1 CE1 sing Y N 91 TYR CD1 HD1 sing N N 92 TYR CD2 CE2 doub Y N 93 TYR CD2 HD2 sing N N 94 TYR CE1 CZ doub Y N 95 TYR CE1 HE1 sing N N 96 TYR CE2 CZ sing Y N 97 TYR CE2 HE2 sing N N 98 TYR CZ OH sing N N 99 TYR OH HH sing N N 100 TYR OXT HXT sing N N 101 # _em_admin.current_status REL _em_admin.deposition_date 2024-08-16 _em_admin.deposition_site RCSB _em_admin.entry_id 9D70 _em_admin.last_update 2025-05-28 _em_admin.map_release_date 2025-01-22 _em_admin.title 'Cryo-EM of helical fibers formed by two peptides Pyn-K6 and Pyn-(EY)3' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C2 _em_helical_entity.angular_rotation_per_subunit -4.22 _em_helical_entity.axial_rise_per_subunit 4.68 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? PHENIX ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM138756 1 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' CA142746 2 # _atom_sites.entry_id 9D70 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O # loop_ #