HEADER VIRAL PROTEIN 18-AUG-24 9D81 TITLE SHIGELLA FLEXNERI BACTERIOPHAGE MOO19 GP82 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAIL FIBER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA VIRUS MOO19; SOURCE 3 ORGANISM_TAXID: 2886042; SOURCE 4 GENE: MOO19_GP82; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MOO19, GP82, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR S.SUBRAMANIAN,S.M.BERGLAND DRARVIK,K.N.PARENT REVDAT 1 15-JAN-25 9D81 0 JRNL AUTH S.SUBRAMANIAN,S.M.BERGLAND DRARVIK,K.R.TINNEY,S.M.DOORE, JRNL AUTH 2 K.N.PARENT JRNL TITL MOO19 AND B2: STRUCTURES OF SCHITOVIRIDAE PODOPHAGES WITH T JRNL TITL 2 = 9 GEOMETRY AND TAILSPIKES WITH ESTERASE ACTIVITY. JRNL REF SCI ADV V. 10 T0022 2024 JRNL REFN ESSN 2375-2548 JRNL PMID 39693418 JRNL DOI 10.1126/SCIADV.ADT0022 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.400 REMARK 3 NUMBER OF PARTICLES : 563035 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9D81 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1000287445. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SHIGELLA VIRUS MOO19 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 700.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2100.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4300.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 MET A 3 REMARK 465 ASN A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 465 ILE A 7 REMARK 465 PRO A 8 REMARK 465 PHE A 9 REMARK 465 ASP A 10 REMARK 465 ALA A 11 REMARK 465 ASP A 12 REMARK 465 ASN A 13 REMARK 465 ASP A 14 REMARK 465 TRP A 15 REMARK 465 THR A 16 REMARK 465 LEU A 17 REMARK 465 ASP A 18 REMARK 465 PRO A 19 REMARK 465 TYR A 20 REMARK 465 HIS A 21 REMARK 465 CYS A 22 REMARK 465 ASN A 23 REMARK 465 ARG A 24 REMARK 465 SER A 25 REMARK 465 ASN A 26 REMARK 465 ASP A 27 REMARK 465 PRO A 28 REMARK 465 LEU A 29 REMARK 465 VAL A 30 REMARK 465 ASP A 31 REMARK 465 LYS A 32 REMARK 465 VAL A 33 REMARK 465 ILE A 34 REMARK 465 GLY A 35 REMARK 465 ASN A 36 REMARK 465 ALA A 37 REMARK 465 TYR A 38 REMARK 465 ALA A 39 REMARK 465 VAL A 40 REMARK 465 VAL A 41 REMARK 465 ARG A 42 REMARK 465 ALA A 43 REMARK 465 VAL A 44 REMARK 465 TYR A 45 REMARK 465 CYS A 46 REMARK 465 ASN A 47 REMARK 465 LEU A 48 REMARK 465 GLY A 49 REMARK 465 ASN A 50 REMARK 465 LEU A 51 REMARK 465 LYS A 52 REMARK 465 LEU A 53 REMARK 465 LEU A 54 REMARK 465 TYR A 55 REMARK 465 ASP A 56 REMARK 465 PHE A 57 REMARK 465 LEU A 58 REMARK 465 ASN A 59 REMARK 465 THR A 60 REMARK 465 TYR A 61 REMARK 465 GLY A 62 REMARK 465 MET A 63 REMARK 465 VAL A 64 REMARK 465 LEU A 65 REMARK 465 GLY A 66 REMARK 465 VAL A 67 REMARK 465 LYS A 68 REMARK 465 SER A 69 REMARK 465 GLU A 70 REMARK 465 ALA A 71 REMARK 465 GLU A 72 REMARK 465 LEU A 73 REMARK 465 LYS A 74 REMARK 465 LYS A 75 REMARK 465 LEU A 76 REMARK 465 ASN A 77 REMARK 465 LYS A 78 REMARK 465 LEU A 79 REMARK 465 ALA A 80 REMARK 465 LYS A 81 REMARK 465 TYR A 82 REMARK 465 ALA A 83 REMARK 465 ARG A 84 REMARK 465 VAL A 85 REMARK 465 TYR A 86 REMARK 465 GLY A 87 REMARK 465 PHE A 88 REMARK 465 ALA A 89 REMARK 465 ASP A 90 REMARK 465 THR A 91 REMARK 465 GLY A 92 REMARK 465 ASP A 93 REMARK 465 ARG A 94 REMARK 465 GLN A 95 REMARK 465 VAL A 96 REMARK 465 THR A 97 REMARK 465 ASP A 98 REMARK 465 TYR A 99 REMARK 465 LEU A 100 REMARK 465 TYR A 101 REMARK 465 VAL A 102 REMARK 465 PRO A 103 REMARK 465 ASP A 104 REMARK 465 ASP A 105 REMARK 465 THR A 106 REMARK 465 SER A 107 REMARK 465 GLY A 108 REMARK 465 ILE A 109 REMARK 465 ARG A 110 REMARK 465 PRO A 111 REMARK 465 ASP A 112 REMARK 465 ASP A 113 REMARK 465 GLN A 114 REMARK 465 THR A 115 REMARK 465 ALA A 116 REMARK 465 THR A 117 REMARK 465 GLY A 118 REMARK 465 SER A 119 REMARK 465 TRP A 120 REMARK 465 ILE A 121 REMARK 465 LYS A 122 REMARK 465 VAL A 123 REMARK 465 SER A 124 REMARK 465 THR A 125 REMARK 465 SER A 126 REMARK 465 GLY A 127 REMARK 465 SER A 128 REMARK 465 GLY A 129 REMARK 465 SER A 130 REMARK 465 GLY A 131 REMARK 465 GLY A 132 REMARK 465 THR A 133 REMARK 465 GLY A 134 REMARK 465 GLY A 135 REMARK 465 GLY A 136 REMARK 465 SER A 137 REMARK 465 GLY A 138 REMARK 465 SER A 139 REMARK 465 TYR A 140 REMARK 465 ILE A 141 REMARK 465 PRO A 142 REMARK 465 TYR A 143 REMARK 465 VAL A 144 REMARK 465 TYR A 145 REMARK 465 ALA A 146 REMARK 465 ASN A 147 REMARK 465 GLY A 148 REMARK 465 SER A 149 REMARK 465 ALA A 150 REMARK 465 LEU A 151 REMARK 465 GLY A 152 REMARK 465 GLY A 153 REMARK 465 GLU A 154 REMARK 465 THR A 155 REMARK 465 SER A 156 REMARK 465 PHE A 157 REMARK 465 LYS A 158 REMARK 465 VAL A 159 REMARK 465 PRO A 160 REMARK 465 ALA A 161 REMARK 465 GLU A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 GLY A 165 REMARK 465 VAL A 166 REMARK 465 PRO A 167 REMARK 465 PHE A 168 REMARK 465 ILE A 169 REMARK 465 ILE A 170 REMARK 465 ILE A 171 REMARK 465 ASN A 172 REMARK 465 GLY A 173 REMARK 465 SER A 174 REMARK 465 VAL A 175 REMARK 465 GLN A 176 REMARK 465 TYR A 177 REMARK 465 ILE A 178 REMARK 465 GLY A 179 REMARK 465 TYR A 180 REMARK 465 GLY A 181 REMARK 465 PHE A 182 REMARK 465 SER A 183 REMARK 465 PHE A 184 REMARK 465 ASN A 185 REMARK 465 PRO A 186 REMARK 465 ALA A 187 REMARK 465 ASN A 188 REMARK 465 SER A 189 REMARK 465 THR A 190 REMARK 465 VAL A 191 REMARK 465 THR A 192 REMARK 465 LEU A 193 REMARK 465 SER A 194 REMARK 465 ASN A 195 REMARK 465 PRO A 196 REMARK 465 LEU A 197 REMARK 465 VAL A 198 REMARK 465 GLN A 199 REMARK 465 GLY A 200 REMARK 465 ASP A 201 REMARK 465 GLU A 202 REMARK 465 VAL A 203 REMARK 465 ILE A 204 REMARK 465 ALA A 205 REMARK 465 LEU A 206 REMARK 465 THR A 207 REMARK 465 SER A 208 REMARK 465 ALA A 209 REMARK 465 ALA A 210 REMARK 465 PRO A 211 REMARK 465 ALA A 212 REMARK 465 SER A 213 REMARK 465 PRO A 214 REMARK 465 ASP A 215 REMARK 465 ASN A 216 REMARK 465 PRO A 217 REMARK 465 ASN A 218 REMARK 465 VAL A 219 REMARK 465 SER A 220 REMARK 465 ASN A 221 REMARK 465 TRP A 222 REMARK 465 VAL A 223 REMARK 465 GLN A 224 REMARK 465 VAL A 225 REMARK 465 ASN A 226 REMARK 465 TRP A 227 REMARK 465 LEU A 228 REMARK 465 TYR A 229 REMARK 465 ASN A 230 REMARK 465 ASN A 231 REMARK 465 GLY A 232 REMARK 465 ALA A 233 REMARK 465 ALA A 234 REMARK 465 VAL A 235 REMARK 465 GLY A 236 REMARK 465 GLY A 237 REMARK 465 GLU A 238 REMARK 465 GLN A 239 REMARK 465 VAL A 240 REMARK 465 ILE A 241 REMARK 465 THR A 242 REMARK 465 VAL A 243 REMARK 465 PRO A 244 REMARK 465 TYR A 245 REMARK 465 ASN A 246 REMARK 465 PHE A 247 REMARK 465 LYS A 248 REMARK 465 ASP A 249 REMARK 465 VAL A 250 REMARK 465 PRO A 251 REMARK 465 ALA A 252 REMARK 465 VAL A 253 REMARK 465 TYR A 254 REMARK 465 LYS A 255 REMARK 465 ASN A 256 REMARK 465 GLY A 257 REMARK 465 GLU A 258 REMARK 465 ARG A 259 REMARK 465 TYR A 260 REMARK 465 TYR A 261 REMARK 465 LYS A 262 REMARK 465 ASN A 263 REMARK 465 LEU A 264 REMARK 465 GLN A 265 REMARK 465 THR A 266 REMARK 465 LYS A 267 REMARK 465 SER A 268 REMARK 465 TYR A 269 REMARK 465 VAL A 270 REMARK 465 TYR A 271 REMARK 465 ASP A 272 REMARK 465 PRO A 273 REMARK 465 SER A 274 REMARK 465 THR A 275 REMARK 465 ARG A 276 REMARK 465 THR A 277 REMARK 465 VAL A 278 REMARK 465 THR A 279 REMARK 465 MET A 280 REMARK 465 THR A 281 REMARK 465 GLU A 282 REMARK 465 LEU A 283 REMARK 465 LEU A 284 REMARK 465 ALA A 285 REMARK 465 GLN A 286 REMARK 465 GLY A 287 REMARK 465 ASP A 288 REMARK 465 ARG A 289 REMARK 465 VAL A 290 REMARK 465 ILE A 291 REMARK 465 ILE A 292 REMARK 465 THR A 293 REMARK 465 LEU A 294 REMARK 465 GLY A 295 REMARK 465 GLY A 296 REMARK 465 GLU A 297 REMARK 465 SER A 298 REMARK 465 ALA A 299 REMARK 465 SER A 300 REMARK 465 LEU A 301 REMARK 465 GLU A 302 REMARK 465 ILE A 303 REMARK 465 THR A 304 REMARK 465 ASP A 305 REMARK 465 ARG A 306 REMARK 465 THR A 307 REMARK 465 THR A 308 REMARK 465 GLN A 309 REMARK 465 GLU A 310 REMARK 465 VAL A 311 REMARK 465 ALA A 312 REMARK 465 ARG A 313 REMARK 465 ALA A 314 REMARK 465 ASN A 315 REMARK 465 ASN A 316 REMARK 465 VAL A 317 REMARK 465 LYS A 318 REMARK 465 ASP A 319 REMARK 465 THR A 320 REMARK 465 ASP A 321 REMARK 465 VAL A 322 REMARK 465 VAL A 323 REMARK 465 LEU A 324 REMARK 465 SER A 325 REMARK 465 SER A 326 REMARK 465 SER A 327 REMARK 465 THR A 328 REMARK 465 ASN A 329 REMARK 465 VAL A 330 REMARK 465 VAL A 331 REMARK 465 ILE A 332 REMARK 465 THR A 333 REMARK 465 ASP A 334 REMARK 465 LYS A 335 REMARK 465 LYS A 336 REMARK 465 VAL A 337 REMARK 465 LEU A 338 REMARK 465 TYR A 339 REMARK 465 ASP A 340 REMARK 465 VAL A 341 REMARK 465 ASN A 342 REMARK 465 ALA A 343 REMARK 465 GLN A 344 REMARK 465 LYS A 345 REMARK 465 TYR A 346 REMARK 465 TRP A 347 REMARK 465 ASP A 348 REMARK 465 LEU A 349 REMARK 465 PRO A 350 REMARK 465 ASN A 351 REMARK 465 LEU A 352 REMARK 465 PRO A 353 REMARK 465 PRO A 354 REMARK 465 ASN A 355 REMARK 465 VAL A 356 REMARK 465 TYR A 357 REMARK 465 ILE A 358 REMARK 465 VAL A 359 REMARK 465 LYS A 360 REMARK 465 VAL A 361 REMARK 465 GLU A 362 REMARK 465 GLY A 363 REMARK 465 ASN A 364 REMARK 465 LYS A 365 REMARK 465 LEU A 366 REMARK 465 ILE A 367 REMARK 465 TYR A 368 REMARK 465 ASN A 369 REMARK 465 PRO A 370 REMARK 465 GLY A 371 REMARK 465 ALA A 372 REMARK 465 VAL A 373 REMARK 465 VAL A 374 REMARK 465 ILE A 375 REMARK 465 ASP A 376 REMARK 465 LEU A 377 REMARK 465 LEU A 378 REMARK 465 GLU A 379 REMARK 465 PRO A 380 REMARK 465 ALA A 381 REMARK 465 ASN A 382 REMARK 465 PRO A 383 REMARK 465 LEU A 384 REMARK 465 VAL A 385 REMARK 465 ILE A 386 REMARK 465 VAL A 387 REMARK 465 GLU A 388 REMARK 465 PRO A 389 REMARK 465 VAL A 390 REMARK 465 LEU A 391 REMARK 465 SER A 392 REMARK 465 ARG A 393 REMARK 465 LEU A 394 REMARK 465 GLY A 395 REMARK 465 ALA A 396 REMARK 465 GLU A 397 REMARK 465 THR A 398 REMARK 465 GLY A 399 REMARK 465 ASN A 400 REMARK 465 PRO A 401 REMARK 465 MET A 402 REMARK 465 ALA A 403 REMARK 465 GLY A 404 REMARK 465 THR A 405 REMARK 465 PHE A 406 REMARK 465 GLU A 407 REMARK 465 LYS A 408 REMARK 465 GLY A 409 REMARK 465 ALA A 410 REMARK 465 THR A 411 REMARK 465 VAL A 412 REMARK 465 ASP A 413 REMARK 465 SER A 414 REMARK 465 ALA A 415 REMARK 465 ALA A 416 REMARK 465 LYS A 417 REMARK 465 SER A 418 REMARK 465 VAL A 419 REMARK 465 GLY A 420 REMARK 465 SER A 421 REMARK 465 THR A 422 REMARK 465 MET A 423 REMARK 465 GLU A 424 REMARK 465 GLY A 425 REMARK 465 LYS A 426 REMARK 465 LEU A 427 REMARK 465 TYR A 428 REMARK 465 ARG A 429 REMARK 465 TRP A 430 REMARK 465 GLU A 431 REMARK 465 GLY A 432 REMARK 465 ALA A 433 REMARK 465 LEU A 434 REMARK 465 PRO A 435 REMARK 465 LYS A 436 REMARK 465 THR A 437 REMARK 465 VAL A 438 REMARK 465 ARG A 439 REMARK 465 ALA A 440 REMARK 465 GLY A 441 REMARK 465 ASP A 442 REMARK 465 THR A 443 REMARK 465 PRO A 444 REMARK 465 SER A 445 REMARK 465 SER A 446 REMARK 465 SER A 447 REMARK 465 GLY A 448 REMARK 465 GLY A 449 REMARK 465 ILE A 450 REMARK 465 GLY A 451 REMARK 465 SER A 452 REMARK 465 GLY A 453 REMARK 465 LYS A 454 REMARK 465 TRP A 455 REMARK 465 VAL A 456 REMARK 465 GLU A 457 REMARK 465 ILE A 458 REMARK 465 THR A 459 REMARK 465 ASN A 460 REMARK 465 ALA A 461 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 837 NZ LYS A 843 2.09 REMARK 500 O ALA A 1018 N GLN A 1020 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A1020 C - N - CA ANGL. DEV. = -15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 524 -163.00 -75.02 REMARK 500 ASP A 536 33.72 -93.05 REMARK 500 ARG A 574 44.19 -109.40 REMARK 500 ALA A 604 -24.66 -141.97 REMARK 500 THR A 748 58.40 -93.71 REMARK 500 ALA A1018 -92.98 -86.45 REMARK 500 ASN A1019 5.81 13.77 REMARK 500 GLN A1020 21.33 -146.70 REMARK 500 PRO A1021 64.43 -112.48 REMARK 500 LEU A1022 -46.32 -25.66 REMARK 500 TYR A1028 76.74 -104.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 1018 ASN A 1019 137.69 REMARK 500 GLN A 1020 PRO A 1021 129.11 REMARK 500 PRO A 1021 LEU A 1022 -133.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 464 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-46624 RELATED DB: EMDB REMARK 900 SHIGELLA FLEXNERI BACTERIOPHAGE MOO19 GP82 DBREF1 9D81 A 1 1086 UNP A0AAE9C514_9CAUD DBREF2 9D81 A A0AAE9C514 1 1086 SEQRES 1 A 1086 MET GLY MET ASN SER HIS ILE PRO PHE ASP ALA ASP ASN SEQRES 2 A 1086 ASP TRP THR LEU ASP PRO TYR HIS CYS ASN ARG SER ASN SEQRES 3 A 1086 ASP PRO LEU VAL ASP LYS VAL ILE GLY ASN ALA TYR ALA SEQRES 4 A 1086 VAL VAL ARG ALA VAL TYR CYS ASN LEU GLY ASN LEU LYS SEQRES 5 A 1086 LEU LEU TYR ASP PHE LEU ASN THR TYR GLY MET VAL LEU SEQRES 6 A 1086 GLY VAL LYS SER GLU ALA GLU LEU LYS LYS LEU ASN LYS SEQRES 7 A 1086 LEU ALA LYS TYR ALA ARG VAL TYR GLY PHE ALA ASP THR SEQRES 8 A 1086 GLY ASP ARG GLN VAL THR ASP TYR LEU TYR VAL PRO ASP SEQRES 9 A 1086 ASP THR SER GLY ILE ARG PRO ASP ASP GLN THR ALA THR SEQRES 10 A 1086 GLY SER TRP ILE LYS VAL SER THR SER GLY SER GLY SER SEQRES 11 A 1086 GLY GLY THR GLY GLY GLY SER GLY SER TYR ILE PRO TYR SEQRES 12 A 1086 VAL TYR ALA ASN GLY SER ALA LEU GLY GLY GLU THR SER SEQRES 13 A 1086 PHE LYS VAL PRO ALA GLU ALA LEU GLY VAL PRO PHE ILE SEQRES 14 A 1086 ILE ILE ASN GLY SER VAL GLN TYR ILE GLY TYR GLY PHE SEQRES 15 A 1086 SER PHE ASN PRO ALA ASN SER THR VAL THR LEU SER ASN SEQRES 16 A 1086 PRO LEU VAL GLN GLY ASP GLU VAL ILE ALA LEU THR SER SEQRES 17 A 1086 ALA ALA PRO ALA SER PRO ASP ASN PRO ASN VAL SER ASN SEQRES 18 A 1086 TRP VAL GLN VAL ASN TRP LEU TYR ASN ASN GLY ALA ALA SEQRES 19 A 1086 VAL GLY GLY GLU GLN VAL ILE THR VAL PRO TYR ASN PHE SEQRES 20 A 1086 LYS ASP VAL PRO ALA VAL TYR LYS ASN GLY GLU ARG TYR SEQRES 21 A 1086 TYR LYS ASN LEU GLN THR LYS SER TYR VAL TYR ASP PRO SEQRES 22 A 1086 SER THR ARG THR VAL THR MET THR GLU LEU LEU ALA GLN SEQRES 23 A 1086 GLY ASP ARG VAL ILE ILE THR LEU GLY GLY GLU SER ALA SEQRES 24 A 1086 SER LEU GLU ILE THR ASP ARG THR THR GLN GLU VAL ALA SEQRES 25 A 1086 ARG ALA ASN ASN VAL LYS ASP THR ASP VAL VAL LEU SER SEQRES 26 A 1086 SER SER THR ASN VAL VAL ILE THR ASP LYS LYS VAL LEU SEQRES 27 A 1086 TYR ASP VAL ASN ALA GLN LYS TYR TRP ASP LEU PRO ASN SEQRES 28 A 1086 LEU PRO PRO ASN VAL TYR ILE VAL LYS VAL GLU GLY ASN SEQRES 29 A 1086 LYS LEU ILE TYR ASN PRO GLY ALA VAL VAL ILE ASP LEU SEQRES 30 A 1086 LEU GLU PRO ALA ASN PRO LEU VAL ILE VAL GLU PRO VAL SEQRES 31 A 1086 LEU SER ARG LEU GLY ALA GLU THR GLY ASN PRO MET ALA SEQRES 32 A 1086 GLY THR PHE GLU LYS GLY ALA THR VAL ASP SER ALA ALA SEQRES 33 A 1086 LYS SER VAL GLY SER THR MET GLU GLY LYS LEU TYR ARG SEQRES 34 A 1086 TRP GLU GLY ALA LEU PRO LYS THR VAL ARG ALA GLY ASP SEQRES 35 A 1086 THR PRO SER SER SER GLY GLY ILE GLY SER GLY LYS TRP SEQRES 36 A 1086 VAL GLU ILE THR ASN ALA THR LEU ARG SER GLN LEU ALA SEQRES 37 A 1086 SER THR GLY GLY ALA ALA MET VAL LYS ALA SER ASP GLY SEQRES 38 A 1086 ARG THR VAL GLU GLN TRP LEU VAL GLN SER ASP SER ALA SEQRES 39 A 1086 SER PHE ARG ALA LYS ASN MET ALA LYS LEU ALA TRP CYS SEQRES 40 A 1086 ASP TYR GLN VAL HIS ASN ARG GLY SER LEU LYS CYS CYS SEQRES 41 A 1086 PHE LEU GLY ASP SER MET THR ALA GLY PHE ASP ARG THR SEQRES 42 A 1086 SER SER ASP THR ILE PRO ALA GLN ASP GLY ASP TRP ALA SEQRES 43 A 1086 THR ARG ALA SER MET ASN TYR PRO TYR ARG PHE ALA SER SEQRES 44 A 1086 TYR LEU PRO GLU GLN SER GLY CYS SER VAL TYR ILE THR SEQRES 45 A 1086 MET ARG ALA ILE SER GLY TYR THR ALA LYS GLN ALA TYR SEQRES 46 A 1086 GLU GLU ALA LEU TRP GLN SER ASN PRO ASN CYS ASP ILE SEQRES 47 A 1086 VAL PHE ILE MET TYR ALA ILE ASN ASP SER GLY GLY VAL SEQRES 48 A 1086 ALA GLY ALA THR LEU ASP LEU TYR MET GLU TYR MET GLU SEQRES 49 A 1086 LYS LEU ILE ARG ARG TYR ILE ASP TRP GLY CYS ALA VAL SEQRES 50 A 1086 VAL VAL GLN ARG PRO SER GLY GLY GLY GLN GLY ALA GLY SEQRES 51 A 1086 ASN PRO ALA TRP LEU HIS TRP ALA LYS ARG MET GLN MET SEQRES 52 A 1086 VAL ALA ARG VAL TYR GLY CYS PRO VAL PHE ASP ALA HIS SEQRES 53 A 1086 GLU VAL MET LEU ASN ARG HIS TYR ALA ALA VAL GLN SER SEQRES 54 A 1086 ASP GLY THR HIS TYR ASN SER MET GLY TYR ALA ILE HIS SEQRES 55 A 1086 GLY GLU LYS LEU ALA SER MET LEU MET ALA GLY GLY LEU SEQRES 56 A 1086 LEU ASP THR TYR LYS PRO VAL VAL ASN GLU THR THR VAL SEQRES 57 A 1086 TRP THR GLY MET MET SER ASP HIS ILE GLY TRP CYS ASP SEQRES 58 A 1086 ALA ARG GLY ASN ILE GLY THR GLY ARG SER ASP GLY ALA SEQRES 59 A 1086 TYR THR ARG ASP LYS VAL THR GLY VAL LEU GLN ALA GLY SEQRES 60 A 1086 LYS ALA THR ILE CYS THR PHE SER PHE TYR LEU ASP ALA SEQRES 61 A 1086 GLU ALA ALA HIS ILE TYR GLY LYS LEU ASP GLY LEU ILE SEQRES 62 A 1086 ASN THR ILE TYR THR ASN GLY TYR TRP TRP ASN ASN GLY SEQRES 63 A 1086 ASN LYS PRO TYR TYR GLN TYR ALA VAL ASP ILE ASP ASN SEQRES 64 A 1086 SER PHE GLY ALA SER LEU GLN ARG VAL ASN LYS SER ALA SEQRES 65 A 1086 ASN ASN TYR GLU GLY MET PRO GLY SER ARG LYS PHE VAL SEQRES 66 A 1086 GLY ARG LEU ILE GLY ARG GLY TRP HIS THR ILE THR LEU SEQRES 67 A 1086 PHE THR ASN LEU GLN GLY GLU ALA LEU LYS ASP ALA PHE SEQRES 68 A 1086 VAL ASN SER ILE THR VAL GLN PRO ILE PRO ILE GLY LEU SEQRES 69 A 1086 SER THR GLU GLN MET TRP GLY GLN ASP GLU GLU ARG ARG SEQRES 70 A 1086 TYR ARG VAL VAL HIS THR ARG ARG MET PRO SER PRO SER SEQRES 71 A 1086 GLY GLN GLY GLY THR LEU PRO VAL ALA VAL ALA LEU THR SEQRES 72 A 1086 GLY PHE GLN MET ARG ALA PRO GLN SER PHE LEU GLY THR SEQRES 73 A 1086 GLY PRO GLY THR ASN ALA VAL PRO ALA PRO TYR PHE TYR SEQRES 74 A 1086 ASN THR VAL PRO GLY LYS LEU LYS VAL TYR ASN GLU LYS SEQRES 75 A 1086 GLY ASP TYR ILE GLU TRP LEU VAL TYR LYS ASP GLY SER SEQRES 76 A 1086 SER GLY LEU LYS TRP LYS GLY LYS VAL LEU THR HIS SER SEQRES 77 A 1086 PHE ALA ASP VAL ALA SER VAL PRO THR LEU THR ALA TYR SEQRES 78 A 1086 MET GLY THR ALA LYS GLN ASN VAL ILE VAL ALA ALA GLY SEQRES 79 A 1086 SER SER GLY ALA ASN GLN PRO LEU GLU ASN ILE TYR ASP SEQRES 80 A 1086 TYR ASN ALA GLY LEU GLN GLU GLN THR GLY ASN PRO SER SEQRES 81 A 1086 THR ASP LEU SER TRP LYS GLY GLY ILE TYR LEU VAL PHE SEQRES 82 A 1086 THR LEU ALA TRP PRO SER THR ALA PRO THR GLY TYR TRP SEQRES 83 A 1086 THR ILE GLU LEU GLU GLY SER ASP TRP PHE GLY ASN SER SEQRES 84 A 1086 GLU SER ALA VAL GLY CYS PHE HELIX 1 AA1 THR A 462 SER A 469 1 8 HELIX 2 AA2 THR A 470 VAL A 476 5 7 HELIX 3 AA3 THR A 483 SER A 491 1 9 HELIX 4 AA4 ASP A 492 ASN A 513 1 22 HELIX 5 AA5 ASP A 524 GLY A 529 1 6 HELIX 6 AA6 ASN A 552 GLY A 566 1 15 HELIX 7 AA7 THR A 580 GLU A 586 1 7 HELIX 8 AA8 ALA A 604 GLY A 609 1 6 HELIX 9 AA9 GLY A 610 ALA A 614 5 5 HELIX 10 AB1 THR A 615 TRP A 633 1 19 HELIX 11 AB2 PRO A 652 TYR A 668 1 17 HELIX 12 AB3 HIS A 683 GLN A 688 1 6 HELIX 13 AB4 ASN A 695 ALA A 712 1 18 HELIX 14 AB5 LYS A 808 ALA A 814 5 7 HELIX 15 AB6 PRO A 881 SER A 885 5 5 HELIX 16 AB7 PRO A 930 LEU A 934 5 5 HELIX 17 AB8 PRO A 938 VAL A 943 5 6 HELIX 18 AB9 TYR A 947 THR A 951 5 5 HELIX 19 AC1 ASP A 991 VAL A 995 5 5 HELIX 20 AC2 SER A 1044 GLY A 1048 5 5 SHEET 1 AA1 5 SER A 568 MET A 573 0 SHEET 2 AA1 5 SER A 516 PHE A 521 1 N LEU A 517 O SER A 568 SHEET 3 AA1 5 ILE A 598 ILE A 601 1 O ILE A 598 N CYS A 520 SHEET 4 AA1 5 ALA A 636 ARG A 641 1 O ALA A 636 N VAL A 599 SHEET 5 AA1 5 VAL A 672 ASP A 674 1 O PHE A 673 N VAL A 639 SHEET 1 AA2 2 THR A 537 ILE A 538 0 SHEET 2 AA2 2 ARG A 548 ALA A 549 -1 O ARG A 548 N ILE A 538 SHEET 1 AA3 4 THR A 726 VAL A 728 0 SHEET 2 AA3 4 ALA A 870 ILE A 880 -1 O ILE A 875 N VAL A 728 SHEET 3 AA3 4 VAL A 763 LEU A 764 -1 N LEU A 764 O ALA A 870 SHEET 4 AA3 4 ILE A 746 GLY A 747 -1 N GLY A 747 O VAL A 763 SHEET 1 AA4 5 THR A 726 VAL A 728 0 SHEET 2 AA4 5 ALA A 870 ILE A 880 -1 O ILE A 875 N VAL A 728 SHEET 3 AA4 5 ALA A 782 ASP A 790 -1 N TYR A 786 O THR A 876 SHEET 4 AA4 5 LYS A 843 ILE A 849 -1 O LYS A 843 N GLY A 787 SHEET 5 AA4 5 VAL A1083 GLY A1084 1 O VAL A1083 N PHE A 844 SHEET 1 AA5 4 ILE A 737 ASP A 741 0 SHEET 2 AA5 4 ILE A 771 LEU A 778 -1 O SER A 775 N GLY A 738 SHEET 3 AA5 4 GLY A 852 PHE A 859 -1 O LEU A 858 N CYS A 772 SHEET 4 AA5 4 ASN A 794 ILE A 796 -1 N ILE A 796 O THR A 857 SHEET 1 AA6 8 TYR A 898 MET A 906 0 SHEET 2 AA6 8 TRP A1066 ASP A1074 -1 O ILE A1068 N ARG A 904 SHEET 3 AA6 8 GLY A 954 ASN A 960 -1 N TYR A 959 O THR A1067 SHEET 4 AA6 8 TYR A 965 LYS A 972 -1 O ILE A 966 N VAL A 958 SHEET 5 AA6 8 LYS A 979 HIS A 987 -1 O LEU A 985 N GLU A 967 SHEET 6 AA6 8 THR A 997 ALA A1005 -1 O ALA A1000 N TRP A 980 SHEET 7 AA6 8 TYR A1050 ALA A1056 -1 O THR A1054 N THR A 999 SHEET 8 AA6 8 GLY A 924 ARG A 928 -1 N MET A 927 O LEU A1051 SHEET 1 AA7 7 TYR A 898 MET A 906 0 SHEET 2 AA7 7 TRP A1066 ASP A1074 -1 O ILE A1068 N ARG A 904 SHEET 3 AA7 7 GLY A 954 ASN A 960 -1 N TYR A 959 O THR A1067 SHEET 4 AA7 7 TYR A 965 LYS A 972 -1 O ILE A 966 N VAL A 958 SHEET 5 AA7 7 LYS A 979 HIS A 987 -1 O LEU A 985 N GLU A 967 SHEET 6 AA7 7 THR A 997 ALA A1005 -1 O ALA A1000 N TRP A 980 SHEET 7 AA7 7 LEU A1032 GLU A1034 -1 O GLN A1033 N THR A1004 SHEET 1 AA8 2 VAL A 920 ALA A 921 0 SHEET 2 AA8 2 THR A1063 GLY A1064 -1 O GLY A1064 N VAL A 920 SHEET 1 AA9 2 ASN A1008 VAL A1011 0 SHEET 2 AA9 2 ILE A1025 ASP A1027 -1 O ASP A1027 N ASN A1008 SSBOND 1 CYS A 520 CYS A 596 1555 1555 2.03 CISPEP 1 LEU A 522 GLY A 523 0 -0.78 CISPEP 2 MET A 906 PRO A 907 0 -1.06 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 4826 PHE A1086 CONECT 447 1040 CONECT 1040 447 MASTER 661 0 0 20 39 0 0 6 4825 1 2 84 END