HEADER VIRAL PROTEIN 18-AUG-24 9D84 TITLE SHIGELLA FLEXNERI BACTERIOPHAGE B2 GP48 AND GP49 CAVEAT 9D84 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GP48; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GP49; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA PHAGE B2; SOURCE 3 ORGANISM_TAXID: 2968270; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SHIGELLA PHAGE B2; SOURCE 8 ORGANISM_TAXID: 2968270; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS B2, GP48 & GP49, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR S.SUBRAMANIAN,S.M.BERGLAND DRARVIK,K.N.PARENT REVDAT 1 15-JAN-25 9D84 0 JRNL AUTH S.SUBRAMANIAN,S.M.BERGLAND DRARVIK,K.R.TINNEY,S.M.DOORE, JRNL AUTH 2 K.N.PARENT JRNL TITL MOO19 AND B2: STRUCTURES OF SCHITOVIRIDAE PODOPHAGES WITH T JRNL TITL 2 = 9 GEOMETRY AND TAILSPIKES WITH ESTERASE ACTIVITY. JRNL REF SCI ADV V. 10 T0022 2024 JRNL REFN ESSN 2375-2548 JRNL PMID 39693418 JRNL DOI 10.1126/SCIADV.ADT0022 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.400 REMARK 3 NUMBER OF PARTICLES : 207853 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9D84 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1000287478. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SHIGELLA PHAGE B2 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 700.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2100.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4314.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLN A 3 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 ARG B 3 REMARK 465 THR B 4 REMARK 465 THR B 5 REMARK 465 ASN B 6 REMARK 465 THR B 7 REMARK 465 CYS B 8 REMARK 465 CYS B 9 REMARK 465 GLY B 10 REMARK 465 ASN B 11 REMARK 465 GLN B 12 REMARK 465 ALA B 13 REMARK 465 GLY B 14 REMARK 465 MET B 15 REMARK 465 VAL B 16 REMARK 465 GLU B 17 REMARK 465 LYS B 18 REMARK 465 PHE B 19 REMARK 465 ILE B 20 REMARK 465 GLY B 21 REMARK 465 THR B 22 REMARK 465 ALA B 23 REMARK 465 TYR B 24 REMARK 465 ASP B 25 REMARK 465 VAL B 26 REMARK 465 VAL B 27 REMARK 465 LYS B 28 REMARK 465 THR B 29 REMARK 465 VAL B 30 REMARK 465 TYR B 31 REMARK 465 ASP B 32 REMARK 465 ASN B 33 REMARK 465 LEU B 34 REMARK 465 GLY B 35 REMARK 465 GLU B 36 REMARK 465 ILE B 37 REMARK 465 GLN B 38 REMARK 465 PHE B 39 REMARK 465 ILE B 40 REMARK 465 TYR B 41 REMARK 465 ASN B 42 REMARK 465 PHE B 43 REMARK 465 LEU B 44 REMARK 465 ASN B 45 REMARK 465 ASP B 46 REMARK 465 TYR B 47 REMARK 465 GLY B 48 REMARK 465 VAL B 49 REMARK 465 LEU B 50 REMARK 465 ILE B 51 REMARK 465 THR B 52 REMARK 465 VAL B 53 REMARK 465 ASP B 54 REMARK 465 SER B 55 REMARK 465 VAL B 56 REMARK 465 THR B 57 REMARK 465 GLU B 58 REMARK 465 LEU B 59 REMARK 465 GLN B 60 REMARK 465 GLU B 61 REMARK 465 LEU B 62 REMARK 465 PRO B 63 REMARK 465 THR B 64 REMARK 465 THR B 65 REMARK 465 ALA B 66 REMARK 465 LYS B 67 REMARK 465 TYR B 68 REMARK 465 THR B 69 REMARK 465 ARG B 70 REMARK 465 VAL B 71 REMARK 465 TYR B 72 REMARK 465 SER B 73 REMARK 465 SER B 74 REMARK 465 THR B 75 REMARK 465 PRO B 76 REMARK 465 THR B 77 REMARK 465 GLY B 78 REMARK 465 VAL B 79 REMARK 465 ARG B 80 REMARK 465 ILE B 81 REMARK 465 TYR B 82 REMARK 465 THR B 83 REMARK 465 ASP B 84 REMARK 465 TYR B 85 REMARK 465 LEU B 86 REMARK 465 TYR B 87 REMARK 465 VAL B 88 REMARK 465 GLU B 89 REMARK 465 GLY B 90 REMARK 465 ASP B 91 REMARK 465 ARG B 92 REMARK 465 THR B 93 REMARK 465 GLY B 94 REMARK 465 VAL B 95 REMARK 465 LEU B 96 REMARK 465 PRO B 97 REMARK 465 SER B 98 REMARK 465 ASP B 99 REMARK 465 PRO B 100 REMARK 465 THR B 101 REMARK 465 ALA B 102 REMARK 465 THR B 103 REMARK 465 GLY B 104 REMARK 465 SER B 105 REMARK 465 TRP B 106 REMARK 465 VAL B 107 REMARK 465 VAL B 108 REMARK 465 VAL B 109 REMARK 465 GLY B 110 REMARK 465 SER B 111 REMARK 465 SER B 112 REMARK 465 ASN B 113 REMARK 465 SER B 114 REMARK 465 GLY B 115 REMARK 465 ALA B 116 REMARK 465 ALA B 117 REMARK 465 THR B 118 REMARK 465 GLY B 119 REMARK 465 THR B 120 REMARK 465 GLY B 121 REMARK 465 ALA B 122 REMARK 465 GLY B 192 REMARK 465 ASN B 193 REMARK 465 PRO B 194 REMARK 465 ALA B 195 REMARK 465 VAL B 196 REMARK 465 PRO B 197 REMARK 465 ASP B 198 REMARK 465 ASN B 199 REMARK 465 PRO B 200 REMARK 465 ASN B 201 REMARK 465 ILE B 202 REMARK 465 ASP B 203 REMARK 465 SER B 204 REMARK 465 TRP B 205 REMARK 465 THR B 206 REMARK 465 VAL B 207 REMARK 465 ILE B 208 REMARK 465 ASN B 209 REMARK 465 TRP B 210 REMARK 465 ILE B 211 REMARK 465 TYR B 212 REMARK 465 ASN B 213 REMARK 465 ASN B 214 REMARK 465 GLY B 215 REMARK 465 ALA B 216 REMARK 465 ALA B 217 REMARK 465 VAL B 218 REMARK 465 GLY B 219 REMARK 465 GLY B 220 REMARK 465 GLU B 221 REMARK 465 GLN B 222 REMARK 465 VAL B 223 REMARK 465 ILE B 224 REMARK 465 VAL B 225 REMARK 465 ILE B 226 REMARK 465 PRO B 227 REMARK 465 TYR B 228 REMARK 465 THR B 229 REMARK 465 PHE B 230 REMARK 465 GLN B 231 REMARK 465 THR B 232 REMARK 465 VAL B 233 REMARK 465 PRO B 234 REMARK 465 ALA B 235 REMARK 465 ILE B 236 REMARK 465 PHE B 237 REMARK 465 LYS B 238 REMARK 465 ASN B 239 REMARK 465 GLY B 240 REMARK 465 LEU B 241 REMARK 465 ARG B 242 REMARK 465 TYR B 243 REMARK 465 GLN B 244 REMARK 465 GLY B 245 REMARK 465 GLY B 246 REMARK 465 LEU B 247 REMARK 465 SER B 248 REMARK 465 THR B 249 REMARK 465 GLN B 250 REMARK 465 SER B 251 REMARK 465 TYR B 252 REMARK 465 THR B 253 REMARK 465 VAL B 254 REMARK 465 ASP B 255 REMARK 465 GLN B 256 REMARK 465 ASP B 257 REMARK 465 ASN B 258 REMARK 465 LYS B 259 REMARK 465 ARG B 260 REMARK 465 ILE B 261 REMARK 465 LEU B 262 REMARK 465 LEU B 263 REMARK 465 THR B 264 REMARK 465 GLU B 265 REMARK 465 PRO B 266 REMARK 465 LEU B 267 REMARK 465 SER B 268 REMARK 465 THR B 269 REMARK 465 ASN B 270 REMARK 465 ASP B 271 REMARK 465 ARG B 272 REMARK 465 LEU B 273 REMARK 465 VAL B 274 REMARK 465 VAL B 275 REMARK 465 GLN B 276 REMARK 465 LEU B 277 REMARK 465 GLY B 278 REMARK 465 GLY B 279 REMARK 465 GLU B 280 REMARK 465 LEU B 281 REMARK 465 VAL B 282 REMARK 465 THR B 283 REMARK 465 LEU B 284 REMARK 465 GLU B 285 REMARK 465 SER B 286 REMARK 465 PRO B 287 REMARK 465 ASP B 288 REMARK 465 ARG B 289 REMARK 465 SER B 290 REMARK 465 LEU B 291 REMARK 465 TYR B 292 REMARK 465 GLU B 293 REMARK 465 ILE B 294 REMARK 465 ALA B 295 REMARK 465 ARG B 296 REMARK 465 ALA B 297 REMARK 465 THR B 298 REMARK 465 ASN B 299 REMARK 465 MET B 300 REMARK 465 LYS B 301 REMARK 465 ASP B 302 REMARK 465 SER B 303 REMARK 465 GLU B 304 REMARK 465 VAL B 305 REMARK 465 ILE B 306 REMARK 465 LYS B 307 REMARK 465 SER B 308 REMARK 465 ASP B 309 REMARK 465 ASN B 310 REMARK 465 THR B 311 REMARK 465 VAL B 312 REMARK 465 GLU B 313 REMARK 465 THR B 314 REMARK 465 LEU B 315 REMARK 465 ASN B 316 REMARK 465 GLY B 317 REMARK 465 LYS B 318 REMARK 465 ARG B 319 REMARK 465 ILE B 320 REMARK 465 LEU B 321 REMARK 465 TYR B 322 REMARK 465 ASP B 323 REMARK 465 ILE B 324 REMARK 465 VAL B 325 REMARK 465 SER B 326 REMARK 465 GLN B 327 REMARK 465 VAL B 328 REMARK 465 TYR B 329 REMARK 465 TYR B 330 REMARK 465 TRP B 331 REMARK 465 ILE B 332 REMARK 465 PRO B 333 REMARK 465 SER B 334 REMARK 465 SER B 335 REMARK 465 VAL B 336 REMARK 465 PRO B 337 REMARK 465 ASN B 338 REMARK 465 ASN B 339 REMARK 465 VAL B 340 REMARK 465 TYR B 341 REMARK 465 ILE B 342 REMARK 465 GLN B 343 REMARK 465 SER B 344 REMARK 465 VAL B 345 REMARK 465 VAL B 346 REMARK 465 ASN B 347 REMARK 465 GLY B 348 REMARK 465 GLN B 349 REMARK 465 LEU B 350 REMARK 465 THR B 351 REMARK 465 TYR B 352 REMARK 465 LEU B 353 REMARK 465 PRO B 354 REMARK 465 GLY B 355 REMARK 465 ASN B 356 REMARK 465 ILE B 357 REMARK 465 VAL B 358 REMARK 465 VAL B 359 REMARK 465 THR B 360 REMARK 465 LEU B 361 REMARK 465 THR B 362 REMARK 465 PRO B 363 REMARK 465 ILE B 364 REMARK 465 VAL B 365 REMARK 465 THR B 366 REMARK 465 LEU B 367 REMARK 465 GLY B 368 REMARK 465 LEU B 369 REMARK 465 SER B 370 REMARK 465 GLY B 371 REMARK 465 THR B 372 REMARK 465 THR B 373 REMARK 465 ALA B 374 REMARK 465 GLN B 375 REMARK 465 ARG B 376 REMARK 465 PRO B 377 REMARK 465 ILE B 378 REMARK 465 GLY B 379 REMARK 465 VAL B 380 REMARK 465 LEU B 381 REMARK 465 THR B 382 REMARK 465 GLY B 383 REMARK 465 THR B 384 REMARK 465 GLN B 385 REMARK 465 HIS B 386 REMARK 465 PHE B 387 REMARK 465 ASP B 388 REMARK 465 THR B 389 REMARK 465 THR B 390 REMARK 465 LEU B 391 REMARK 465 GLY B 392 REMARK 465 LYS B 393 REMARK 465 PRO B 394 REMARK 465 ILE B 395 REMARK 465 TRP B 396 REMARK 465 PHE B 397 REMARK 465 ASN B 398 REMARK 465 GLY B 399 REMARK 465 THR B 400 REMARK 465 ALA B 401 REMARK 465 TRP B 402 REMARK 465 VAL B 403 REMARK 465 ASP B 404 REMARK 465 SER B 405 REMARK 465 THR B 406 REMARK 465 GLY B 407 REMARK 465 ALA B 408 REMARK 465 VAL B 409 REMARK 465 VAL B 410 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 131 CG1 CG2 REMARK 470 ASP A 508 CG OD1 OD2 REMARK 470 TYR B 145 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR B 146 OG1 CG2 REMARK 470 ILE B 147 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 634 OG SER A 639 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 776 CA SER A 776 CB -0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 132 59.38 -102.24 REMARK 500 ALA A 151 -165.93 -126.02 REMARK 500 ASP A 387 -167.65 -126.24 REMARK 500 ASN A 503 114.67 -161.83 REMARK 500 LEU A 534 56.90 -95.38 REMARK 500 ASN A 648 0.03 -66.71 REMARK 500 SER A 753 -166.32 -125.03 REMARK 500 SER A 758 -169.52 -160.83 REMARK 500 ASN B 130 12.62 54.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 129 ALA A 130 -135.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-46628 RELATED DB: EMDB REMARK 900 SHIGELLA FLEXNERI BACTERIOPHAGE B2 GP48 AND GP49 DBREF 9D84 A 1 777 PDB 9D84 9D84 1 777 DBREF 9D84 B 1 410 PDB 9D84 9D84 1 410 SEQRES 1 A 777 MET ASN GLN LEU PHE SER GLN GLY GLY LYS GLY SER ALA SEQRES 2 A 777 GLY ILE LEU THR ASN LYS GLN ALA VAL ALA ARG HIS PHE SEQRES 3 A 777 GLY VAL LYS GLN SER GLU VAL VAL TYR PHE SER VAL GLY SEQRES 4 A 777 VAL ASP ILE SER GLY TYR LYS VAL ILE TYR ASP LYS THR SEQRES 5 A 777 THR GLN ARG ALA TYR SER LEU PRO ILE GLY ILE PRO ALA SEQRES 6 A 777 GLY THR THR ALA ILE SER LEU SER THR ALA ALA VAL LEU SEQRES 7 A 777 VAL HIS SER GLN GLY SER VAL ASP LEU GLY ALA VAL ALA SEQRES 8 A 777 VAL LEU ARG LYS GLU TYR VAL THR ILE PRO GLY ASP PHE SEQRES 9 A 777 THR SER GLY ALA THR ILE GLN VAL LYS ASN GLU ILE LEU SEQRES 10 A 777 THR HIS SER ASN GLY ALA GLN TYR ARG TRP ALA GLY ALA SEQRES 11 A 777 VAL PRO LYS VAL VAL PRO ALA GLY SER THR PRO ALA SER SEQRES 12 A 777 SER GLY GLY ILE SER ALA SER ALA TRP ILE GLU VAL THR SEQRES 13 A 777 GLY GLU GLU LEU ARG ASP GLU LEU ALA THR THR GLY GLY SEQRES 14 A 777 ALA SER GLN ILE GLY THR SER ASP GLY LYS THR VAL GLN SEQRES 15 A 777 GLN TRP ILE ILE ALA ASN ASP SER ALA ASN TYR ARG ALA SEQRES 16 A 777 ARG ASN ILE GLN LYS LEU ALA TRP VAL ASP LYS GLN VAL SEQRES 17 A 777 HIS SER ARG GLY SER ILE LYS VAL LEU PHE GLN GLY ASP SEQRES 18 A 777 SER MET THR ALA GLY TYR ASP THR THR SER THR ASP ARG SEQRES 19 A 777 VAL PRO ALA ASN ASN GLY ASP TRP ALA THR HIS ALA SER SEQRES 20 A 777 MET THR TYR PRO GLN ARG PHE MET ALA TYR LEU PRO GLU SEQRES 21 A 777 GLN SER GLY CYS SER VAL THR GLY VAL TYR ARG ALA ILE SEQRES 22 A 777 SER GLY HIS THR ALA ILE GLN SER TYR ASN GLU PRO SER SEQRES 23 A 777 TRP GLN SER ASN PRO ASN CYS ASP VAL VAL ILE LEU MET SEQRES 24 A 777 LEU GLY LEU ASN ASP ALA GLY GLY VAL ALA GLY THR THR SEQRES 25 A 777 GLU ASP ILE TYR MET GLU TYR MET GLU LYS LEU ILE ARG SEQRES 26 A 777 ARG PHE ILE ASP TRP GLY MET GLY VAL VAL VAL GLN THR SEQRES 27 A 777 CYS SER THR GLY GLY GLN GLY SER GLY GLY VAL VAL ALA SEQRES 28 A 777 ASN LEU TRP ALA LYS ARG MET ARG MET MET ALA ASP THR SEQRES 29 A 777 TYR GLY CYS ALA HIS PHE ASN ALA ASP GLU VAL GLN TYR SEQRES 30 A 777 TYR ARG HIS ASN GLY ALA VAL GLN SER ASP GLY GLY HIS SEQRES 31 A 777 PHE ASN SER MET GLY TYR ALA ILE HIS GLY GLN MET LEU SEQRES 32 A 777 ALA SER MET PHE MET ALA GLY GLY LEU LEU PRO THR TYR SEQRES 33 A 777 ARG PRO LEU THR ASN GLU ILE ASN THR TRP CYS GLY ARG SEQRES 34 A 777 LEU ASP ASP SER ILE GLY TYR CYS ASP ALA THR GLY ASN SEQRES 35 A 777 ILE ASN LEU GLY ARG SER ASP GLY ALA TYR THR ARG THR SEQRES 36 A 777 LYS VAL VAL GLY GLY MET LEU ALA ASN VAL ALA SER ILE SEQRES 37 A 777 ALA THR PHE SER PHE TYR LEU ASP ALA GLU ALA ALA HIS SEQRES 38 A 777 ILE PHE VAL HIS GLY SER GLY ALA GLY PRO ILE ASN VAL SEQRES 39 A 777 LEU VAL ASP ALA PRO SER TRP TRP ASN ASN GLY ALA GLN SEQRES 40 A 777 ASP TYR TYR ASP PHE ALA ASN ASN GLN SER ILE ASN PHE SEQRES 41 A 777 SER ASN SER PRO GLN ALA ALA ASN ASN ALA ILE VAL ASP SEQRES 42 A 777 LEU SER THR THR TYR SER ALA ASP ARG LYS PHE VAL GLY SEQRES 43 A 777 ARG ILE LEU GLY ARG GLY TRP LYS THR LEU THR PHE PHE SEQRES 44 A 777 THR ASN LEU GLN GLY THR GLY GLY ASP PHE TYR LEU ASN SEQRES 45 A 777 SER LEU THR VAL GLN PRO VAL PRO VAL GLY MET SER VAL SEQRES 46 A 777 GLN ALA ARG ASN TRP ALA ARG PHE ASP LYS GLY HIS ARG SEQRES 47 A 777 ALA VAL TYR SER LYS LYS ILE PRO GLN ALA TYR ASN GLN SEQRES 48 A 777 ALA THR LEU PRO THR ALA THR ALA LEU VAL ASN PHE GLN SEQRES 49 A 777 VAL PRO MET PRO GLN SER MET LEU PRO THR THR PRO SER SEQRES 50 A 777 ILE SER GLY ASP LEU GLY THR ASN PHE TYR ASN CYS GLY SEQRES 51 A 777 HIS SER VAL LEU LYS ILE SER ASN SER SER GLY ASP TYR SEQRES 52 A 777 LEU GLU VAL LEU LEU ILE LYS THR THR GLY GLY GLY TYR SEQRES 53 A 777 VAL PHE THR GLY LYS ILE LEU LYS THR THR TYR ALA THR SEQRES 54 A 777 GLY ASN GLN PRO THR ALA ILE THR ALA THR ALA ALA HIS SEQRES 55 A 777 TYR SER MET LYS ASP LEU LYS VAL ALA GLY ALA ASN GLY SEQRES 56 A 777 PRO ASN MET PRO LEU GLU THR ILE ARG ASP ILE ASP MET SEQRES 57 A 777 ALA SER TYR VAL THR ILE GLY VAL GLY ALA GLY ASN GLY SEQRES 58 A 777 GLY LEU VAL LEU ASP ILE ASN ILE THR TRP PRO SER THR SEQRES 59 A 777 PRO PRO THR SER TYR TRP ASN ILE GLU LEU GLU ALA TRP SEQRES 60 A 777 ASP MET PHE GLY ASN SER GLU ALA SER ILE SEQRES 1 B 410 MET ILE ARG THR THR ASN THR CYS CYS GLY ASN GLN ALA SEQRES 2 B 410 GLY MET VAL GLU LYS PHE ILE GLY THR ALA TYR ASP VAL SEQRES 3 B 410 VAL LYS THR VAL TYR ASP ASN LEU GLY GLU ILE GLN PHE SEQRES 4 B 410 ILE TYR ASN PHE LEU ASN ASP TYR GLY VAL LEU ILE THR SEQRES 5 B 410 VAL ASP SER VAL THR GLU LEU GLN GLU LEU PRO THR THR SEQRES 6 B 410 ALA LYS TYR THR ARG VAL TYR SER SER THR PRO THR GLY SEQRES 7 B 410 VAL ARG ILE TYR THR ASP TYR LEU TYR VAL GLU GLY ASP SEQRES 8 B 410 ARG THR GLY VAL LEU PRO SER ASP PRO THR ALA THR GLY SEQRES 9 B 410 SER TRP VAL VAL VAL GLY SER SER ASN SER GLY ALA ALA SEQRES 10 B 410 THR GLY THR GLY ALA TYR ILE PRO PHE VAL PHE ASN ASN SEQRES 11 B 410 GLY SER ALA ALA GLY GLY GLU THR THR ILE VAL VAL PRO SEQRES 12 B 410 ASP TYR THR ILE GLY VAL PRO GLU ILE TYR VAL GLU GLY SEQRES 13 B 410 PHE ARG GLN GLN VAL GLY ARG GLY PHE THR PHE ASN SER SEQRES 14 B 410 VAL ASN LEU THR VAL THR LEU ALA GLN PRO LEU GLU GLN SEQRES 15 B 410 GLY ASP GLU VAL VAL LEU MET LEU SER GLY ASN PRO ALA SEQRES 16 B 410 VAL PRO ASP ASN PRO ASN ILE ASP SER TRP THR VAL ILE SEQRES 17 B 410 ASN TRP ILE TYR ASN ASN GLY ALA ALA VAL GLY GLY GLU SEQRES 18 B 410 GLN VAL ILE VAL ILE PRO TYR THR PHE GLN THR VAL PRO SEQRES 19 B 410 ALA ILE PHE LYS ASN GLY LEU ARG TYR GLN GLY GLY LEU SEQRES 20 B 410 SER THR GLN SER TYR THR VAL ASP GLN ASP ASN LYS ARG SEQRES 21 B 410 ILE LEU LEU THR GLU PRO LEU SER THR ASN ASP ARG LEU SEQRES 22 B 410 VAL VAL GLN LEU GLY GLY GLU LEU VAL THR LEU GLU SER SEQRES 23 B 410 PRO ASP ARG SER LEU TYR GLU ILE ALA ARG ALA THR ASN SEQRES 24 B 410 MET LYS ASP SER GLU VAL ILE LYS SER ASP ASN THR VAL SEQRES 25 B 410 GLU THR LEU ASN GLY LYS ARG ILE LEU TYR ASP ILE VAL SEQRES 26 B 410 SER GLN VAL TYR TYR TRP ILE PRO SER SER VAL PRO ASN SEQRES 27 B 410 ASN VAL TYR ILE GLN SER VAL VAL ASN GLY GLN LEU THR SEQRES 28 B 410 TYR LEU PRO GLY ASN ILE VAL VAL THR LEU THR PRO ILE SEQRES 29 B 410 VAL THR LEU GLY LEU SER GLY THR THR ALA GLN ARG PRO SEQRES 30 B 410 ILE GLY VAL LEU THR GLY THR GLN HIS PHE ASP THR THR SEQRES 31 B 410 LEU GLY LYS PRO ILE TRP PHE ASN GLY THR ALA TRP VAL SEQRES 32 B 410 ASP SER THR GLY ALA VAL VAL HELIX 1 AA1 LYS A 10 ALA A 13 5 4 HELIX 2 AA2 GLY A 14 GLY A 27 1 14 HELIX 3 AA3 LYS A 29 SER A 31 5 3 HELIX 4 AA4 LEU A 87 ARG A 94 1 8 HELIX 5 AA5 GLY A 157 ALA A 165 1 9 HELIX 6 AA6 GLY A 168 ILE A 173 5 6 HELIX 7 AA7 THR A 180 HIS A 209 1 30 HELIX 8 AA8 ASP A 221 GLY A 226 1 6 HELIX 9 AA9 THR A 249 GLY A 263 1 15 HELIX 10 AB1 THR A 277 ASN A 283 1 7 HELIX 11 AB2 GLU A 284 GLN A 288 5 5 HELIX 12 AB3 GLY A 301 GLY A 306 1 6 HELIX 13 AB4 GLY A 307 THR A 311 5 5 HELIX 14 AB5 THR A 312 TRP A 330 1 19 HELIX 15 AB6 GLY A 348 TYR A 365 1 18 HELIX 16 AB7 ASN A 371 VAL A 375 5 5 HELIX 17 AB8 HIS A 380 GLN A 385 1 6 HELIX 18 AB9 ASN A 392 GLY A 410 1 19 HELIX 19 AC1 ASP A 497 TRP A 502 1 6 HELIX 20 AC2 GLN A 507 ALA A 513 5 7 HELIX 21 AC3 SER A 535 SER A 539 5 5 HELIX 22 AC4 PRO A 580 SER A 584 5 5 HELIX 23 AC5 PRO A 628 LEU A 632 5 5 HELIX 24 AC6 THR A 635 GLY A 640 1 6 HELIX 25 AC7 ASN B 129 SER B 132 5 4 SHEET 1 AA1 3 VAL A 33 TYR A 35 0 SHEET 2 AA1 3 VAL A 47 ASP A 50 1 O TYR A 49 N VAL A 34 SHEET 3 AA1 3 ARG A 55 SER A 58 -1 O TYR A 57 N ILE A 48 SHEET 1 AA2 3 ALA A 69 LEU A 72 0 SHEET 2 AA2 3 VAL A 77 HIS A 80 -1 O VAL A 79 N ILE A 70 SHEET 3 AA2 3 GLY A 83 ASP A 86 -1 O VAL A 85 N LEU A 78 SHEET 1 AA3 4 VAL A 98 ASP A 103 0 SHEET 2 AA3 4 GLU A 115 THR A 118 1 O ILE A 116 N VAL A 98 SHEET 3 AA3 4 GLN A 124 ARG A 126 -1 O TYR A 125 N LEU A 117 SHEET 4 AA3 4 ILE A 153 GLU A 154 -1 O ILE A 153 N ARG A 126 SHEET 1 AA4 5 SER A 265 ALA A 272 0 SHEET 2 AA4 5 SER A 213 GLY A 220 1 N VAL A 216 O THR A 267 SHEET 3 AA4 5 VAL A 295 MET A 299 1 O VAL A 295 N LEU A 217 SHEET 4 AA4 5 GLY A 333 GLN A 337 1 O GLY A 333 N VAL A 296 SHEET 5 AA4 5 ALA A 368 PHE A 370 1 O ALA A 368 N VAL A 336 SHEET 1 AA5 2 ARG A 234 VAL A 235 0 SHEET 2 AA5 2 HIS A 245 ALA A 246 -1 O HIS A 245 N VAL A 235 SHEET 1 AA6 3 ILE A 423 THR A 425 0 SHEET 2 AA6 3 PHE A 569 VAL A 579 -1 O LEU A 574 N THR A 425 SHEET 3 AA6 3 GLY A 460 MET A 461 -1 N MET A 461 O PHE A 569 SHEET 1 AA7 4 ILE A 423 THR A 425 0 SHEET 2 AA7 4 PHE A 569 VAL A 579 -1 O LEU A 574 N THR A 425 SHEET 3 AA7 4 ALA A 479 GLY A 488 -1 N PHE A 483 O THR A 575 SHEET 4 AA7 4 LYS A 543 LEU A 549 -1 O LYS A 543 N VAL A 484 SHEET 1 AA8 4 ILE A 434 ASP A 438 0 SHEET 2 AA8 4 ILE A 468 LEU A 475 -1 O SER A 472 N GLY A 435 SHEET 3 AA8 4 GLY A 552 PHE A 559 -1 O PHE A 558 N ALA A 469 SHEET 4 AA8 4 ASN A 493 LEU A 495 -1 N ASN A 493 O PHE A 559 SHEET 1 AA9 8 HIS A 597 ILE A 605 0 SHEET 2 AA9 8 TRP A 760 ASP A 768 -1 O TRP A 760 N ILE A 605 SHEET 3 AA9 8 SER A 652 ASN A 658 -1 N SER A 657 O ASN A 761 SHEET 4 AA9 8 TYR A 663 ILE A 669 -1 O VAL A 666 N LEU A 654 SHEET 5 AA9 8 VAL A 677 THR A 685 -1 O LYS A 681 N LEU A 667 SHEET 6 AA9 8 ALA A 695 LYS A 709 -1 O ALA A 698 N PHE A 678 SHEET 7 AA9 8 LEU A 743 THR A 750 -1 O VAL A 744 N ALA A 701 SHEET 8 AA9 8 ASN A 622 PRO A 626 -1 N VAL A 625 O LEU A 745 SHEET 1 AB1 7 HIS A 597 ILE A 605 0 SHEET 2 AB1 7 TRP A 760 ASP A 768 -1 O TRP A 760 N ILE A 605 SHEET 3 AB1 7 SER A 652 ASN A 658 -1 N SER A 657 O ASN A 761 SHEET 4 AB1 7 TYR A 663 ILE A 669 -1 O VAL A 666 N LEU A 654 SHEET 5 AB1 7 VAL A 677 THR A 685 -1 O LYS A 681 N LEU A 667 SHEET 6 AB1 7 ALA A 695 LYS A 709 -1 O ALA A 698 N PHE A 678 SHEET 7 AB1 7 ILE A 723 THR A 733 -1 O ASP A 727 N SER A 704 SHEET 1 AB2 2 THR A 618 ALA A 619 0 SHEET 2 AB2 2 THR A 757 SER A 758 -1 O SER A 758 N THR A 618 SHEET 1 AB3 4 ILE B 124 VAL B 127 0 SHEET 2 AB3 4 VAL B 186 LEU B 190 -1 O LEU B 188 N PHE B 126 SHEET 3 AB3 4 GLU B 151 VAL B 154 -1 N TYR B 153 O VAL B 187 SHEET 4 AB3 4 PHE B 157 GLN B 160 -1 O GLN B 159 N ILE B 152 SHEET 1 AB4 3 ALA B 134 VAL B 141 0 SHEET 2 AB4 3 THR B 173 GLN B 182 -1 O VAL B 174 N ILE B 140 SHEET 3 AB4 3 PHE B 165 ASN B 168 -1 N THR B 166 O THR B 175 CISPEP 1 ILE A 605 PRO A 606 0 1.28 CISPEP 2 MET A 718 PRO A 719 0 -0.37 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 5829 ILE A 777 TER 6345 SER B 191 MASTER 533 0 0 25 52 0 0 6 6343 2 0 92 END