HEADER RNA BINDING PROTEIN 27-AUG-24 9DCN TITLE SOLUTION STRUCTURE OF THE TRANSLATION INITIATION FACTOR IF-1 FROM TITLE 2 NEISSERIA GONORRHOEAE (NCCP11945). SEATTLE STRUCTURAL GENOMICS CENTER TITLE 3 FOR INFECTIOUS DISEASE TARGET NEGOA.17902.A COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLATION INITIATION FACTOR IF-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE (STRAIN ATCC 700825 / FA SOURCE 3 1090); SOURCE 4 ORGANISM_TAXID: 242231; SOURCE 5 STRAIN: ATCC 700825 / FA 1090; SOURCE 6 GENE: INFA, NGO1821.1, NGO18211; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS PROTEIN SYNTHESIS, TRANSLATION INITIATION, STRUCTURAL GENOMICS, KEYWDS 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 3 DNA BINDING PROTEIN, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.W.BUCHKO,SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE AUTHOR 2 (SSGCID) REVDAT 1 16-OCT-24 9DCN 0 JRNL AUTH G.W.BUCHKO,W.C.VAN VOORHIS,J.CRAIG,P.J.MYLER JRNL TITL STRUCTURAL CHARACTERIZATION OF THE TRANSLATION INITIATION JRNL TITL 2 FACTOR IF-1 FROM NEISSERIA GONORRHOEAE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.2, CNS SOLVE 1.3 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WATER REFINEMENT. STRUCTURE REMARK 3 DETERMINATION WAS PERFORMED ITERATIVELY USING CYANA (AUTOMATED REMARK 3 NOESY ASSIGNMENTS). A TOTAL OF 20 STRUCTURES OUT OF 100 WITH REMARK 3 LOWEST TARGET FUNCTION FROM THE FINAL CYANA CALCULATION WERE REMARK 3 TAKEN AND REFINED BY RESTRAINED MOLECULAR DYNAMICS/ENERGY REMARK 3 MINIMIZATION IN EXPLICIT WATER (CNS) AFTER ADDING 0% TO THE REMARK 3 UPPER BOUNDARY LIMIT OF THE DISTANCE RESTRAINTS AND THE VDW. REMARK 3 ONLY 8 SLOWLY EXCHANGING AMIDE RESONANCES OBSERVED IN THE REMARK 3 DEUTERIUM EXCHANGE EXPERIMENT. OTHER HYDROGEN BONDS INTRODUCED REMARK 3 ON THE BASIS OF PROXIMITY IN EARLY STRUCTURE CALCULATIONS (AFTER REMARK 3 ADDITION OF DIHEDRAL ANGLE RESTRAINTS). REMARK 4 REMARK 4 9DCN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1000287868. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 222 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 200 MM SODIUM CHLORIDE, 20 MM REMARK 210 TRIS, 1 MM EDTA, 1 MM DTT, 0.8 REMARK 210 MM [U-98% 13C; U-98% 15N] R20, REMARK 210 93% H2O/7% D2O; 200 MM SODIUM REMARK 210 CHLORIDE, 20 MM TRIS, 1 MM EDTA, REMARK 210 1 MM DTT, 0.2 MM [U-10% 13C; U- REMARK 210 99% 15N] R20, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC ALIPHATIC; 2D 1H REMARK 210 -15N HSQC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY; 3D 1H- REMARK 210 15N TOCSY; 3D C(CO)NH; 3D HNCACB; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 2D 1H- REMARK 210 15N HSQC DEUTERIUM EXCHANGE REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : ASCEND REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : POKY, NMRPIPE, TALOS+ REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 11 90.87 63.33 REMARK 500 2 PRO A 26 78.85 -59.01 REMARK 500 2 ARG A 54 13.70 -156.89 REMARK 500 3 HIS A 5 -165.06 -125.48 REMARK 500 3 HIS A 6 -74.33 -105.60 REMARK 500 4 ALA A 2 84.41 -153.45 REMARK 500 4 HIS A 4 89.57 58.90 REMARK 500 4 ASN A 27 26.27 -151.70 REMARK 500 4 ASP A 69 76.04 -102.75 REMARK 500 5 HIS A 6 94.32 -68.44 REMARK 500 5 PRO A 26 -161.09 -78.30 REMARK 500 6 PRO A 26 -159.82 -74.46 REMARK 500 6 ILE A 53 66.65 -103.08 REMARK 500 6 ARG A 54 92.28 -170.26 REMARK 500 7 HIS A 3 -6.89 -154.55 REMARK 500 7 HIS A 4 -81.71 -77.17 REMARK 500 7 ASP A 13 85.50 -69.88 REMARK 500 7 PRO A 26 1.77 -68.96 REMARK 500 8 GLU A 12 37.23 -91.98 REMARK 500 8 PRO A 26 -164.27 -66.50 REMARK 500 8 TYR A 52 -72.85 -67.48 REMARK 500 8 ARG A 54 98.64 -69.21 REMARK 500 9 ASP A 13 89.59 -68.54 REMARK 500 9 PRO A 26 -9.46 -55.03 REMARK 500 10 ASN A 27 31.89 -83.62 REMARK 500 10 ARG A 54 59.62 -90.90 REMARK 500 10 PHE A 77 99.10 -65.17 REMARK 500 11 HIS A 5 28.16 -143.02 REMARK 500 11 VAL A 76 -66.36 -108.32 REMARK 500 13 ALA A 10 91.34 -64.79 REMARK 500 13 LYS A 11 98.46 -64.94 REMARK 500 13 ASN A 27 31.19 -83.02 REMARK 500 13 ASP A 69 41.09 -109.82 REMARK 500 14 ASP A 13 88.51 -67.53 REMARK 500 14 ARG A 54 95.11 -69.32 REMARK 500 15 ALA A 2 91.88 -162.63 REMARK 500 15 HIS A 3 91.68 -67.99 REMARK 500 15 ASP A 13 86.84 -49.84 REMARK 500 15 ILE A 53 106.15 -50.77 REMARK 500 15 ASP A 69 52.12 -104.79 REMARK 500 15 PHE A 77 99.88 -163.10 REMARK 500 16 HIS A 4 -77.27 -136.46 REMARK 500 16 GLU A 12 -74.61 -119.64 REMARK 500 16 PRO A 26 -166.64 -76.64 REMARK 500 17 HIS A 7 78.82 55.83 REMARK 500 17 HIS A 8 144.44 179.46 REMARK 500 17 PRO A 26 -163.33 -73.75 REMARK 500 18 HIS A 3 94.30 -61.19 REMARK 500 18 HIS A 7 98.93 -54.84 REMARK 500 18 MET A 9 95.23 -66.42 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 31199 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE TRANSLATION INITIATION FACTOR IF-1 FROM REMARK 900 NEISSERIA GONORRHOEAE (NCCP11945). SEATTLE STRUCTURAL GENOMICS REMARK 900 CENTER FOR INFECTIOUS DISEASE TARGET NEGOA.17902.A REMARK 900 RELATED ID: NEGOA.17902.A RELATED DB: TARGETTRACK DBREF 9DCN A 9 80 UNP Q5F5U8 IF1_NEIG1 1 72 SEQADV 9DCN MET A 1 UNP Q5F5U8 INITIATING METHIONINE SEQADV 9DCN ALA A 2 UNP Q5F5U8 EXPRESSION TAG SEQADV 9DCN HIS A 3 UNP Q5F5U8 EXPRESSION TAG SEQADV 9DCN HIS A 4 UNP Q5F5U8 EXPRESSION TAG SEQADV 9DCN HIS A 5 UNP Q5F5U8 EXPRESSION TAG SEQADV 9DCN HIS A 6 UNP Q5F5U8 EXPRESSION TAG SEQADV 9DCN HIS A 7 UNP Q5F5U8 EXPRESSION TAG SEQADV 9DCN HIS A 8 UNP Q5F5U8 EXPRESSION TAG SEQRES 1 A 80 MET ALA HIS HIS HIS HIS HIS HIS MET ALA LYS GLU ASP SEQRES 2 A 80 THR ILE GLN MET GLN GLY GLU ILE LEU GLU THR LEU PRO SEQRES 3 A 80 ASN ALA THR PHE LYS VAL LYS LEU GLU ASN ASP HIS ILE SEQRES 4 A 80 VAL LEU GLY HIS ILE SER GLY LYS MET ARG MET HIS TYR SEQRES 5 A 80 ILE ARG ILE SER PRO GLY ASP LYS VAL THR VAL GLU LEU SEQRES 6 A 80 THR PRO TYR ASP LEU THR ARG ALA ARG ILE VAL PHE ARG SEQRES 7 A 80 ALA ARG HELIX 1 AA1 LYS A 47 TYR A 52 1 6 HELIX 2 AA2 THR A 66 LEU A 70 5 5 SHEET 1 AA1 6 ILE A 15 THR A 24 0 SHEET 2 AA1 6 THR A 29 LEU A 34 -1 O LYS A 33 N GLU A 20 SHEET 3 AA1 6 ILE A 39 HIS A 43 -1 O VAL A 40 N VAL A 32 SHEET 4 AA1 6 ARG A 72 VAL A 76 1 O ALA A 73 N HIS A 43 SHEET 5 AA1 6 LYS A 60 LEU A 65 -1 N THR A 62 O VAL A 76 SHEET 6 AA1 6 ILE A 15 THR A 24 -1 N ILE A 15 O LEU A 65 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1