HEADER GENE REGULATION 28-AUG-24 9DE2 TITLE ETO2 MYND BOUND TO MPPL PEPTIDE FROM GATAD2A COMPND MOL_ID: 1; COMPND 2 MOLECULE: GATAD2A-MPPL MOTIF AND ETO2 NHR4 DOMAIN FUSION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MTG8-RELATED PROTEIN 2,MYELOID TRANSLOCATION GENE ON COMPND 5 CHROMOSOME 16 PROTEIN,HMTG16,ZINC FINGER MYND DOMAIN-CONTAINING COMPND 6 PROTEIN 4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CBFA2T3, MTG16, MTGR2, ZMYND4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ZN FINGER COMPLEX, POLYPROLINE BINDER, MYND, NURD, GENE REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.C.WILLIAMS REVDAT 2 18-JUN-25 9DE2 1 JRNL REVDAT 1 18-SEP-24 9DE2 0 JRNL AUTH G.DAN-DUKOR,S.SHANG,G.O.LEIGHTON,C.R.TRAVIS,T.D.SCHWOCHERT, JRNL AUTH 2 P.AGRAWAL,O.AJASA,T.LI,M.L.WATERS,G.D.GINDER, JRNL AUTH 3 D.C.WILLIAMS JR. JRNL TITL THE ROLE OF MULTIVALENCY IN THE ASSOCIATION OF THE EIGHT JRNL TITL 2 TWENTY-ONE PROTEIN 2 (ETO2) WITH THE NUCLEOSOME REMODELING JRNL TITL 3 AND DEACETYLASE (NURD) COMPLEX. JRNL REF NUCLEIC ACIDS RES. V. 53 2025 JRNL REFN ESSN 1362-4962 JRNL PMID 40421803 JRNL DOI 10.1093/NAR/GKAF439 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 3.8 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9DE2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1000287888. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 295 REMARK 210 PH : 6.8; 6.8 REMARK 210 IONIC STRENGTH : NACL 100 MM; NACL 100 MM REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 500 UM [U-100% 13C; U-100% 15N] REMARK 210 ETO2-NHR4-MPPLSC, 25 MM BISTRIS, REMARK 210 100 MM NACL, 1 MM DTT, 50 UM REMARK 210 ZNSO4, 95% H2O/5% D2O; 500 UM [U- REMARK 210 100% 13C; U-100% 15N] ETO2-NHR4- REMARK 210 MPPLSC, 25 MM BISTRIS, 100 MM REMARK 210 NACL, 1 MM DTT, 50 UM ZNSO4, 5 % REMARK 210 PEG:HEXONAL (C13:E5 R=0.85), 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HNCO; 3D HBHA(CO)NH; REMARK 210 3D 1H-15N NOESY; 3D C(CO)NH; 2D REMARK 210 HBCBCGCDHD; 2D HBCBCGCDCEHE; 3D REMARK 210 HNCO JNH REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 530 -139.90 54.15 REMARK 500 1 GLN A 544 -33.04 -132.11 REMARK 500 1 ARG A 548 43.49 -143.98 REMARK 500 1 SER A 550 -50.78 -176.40 REMARK 500 1 ASP A 551 -63.86 75.86 REMARK 500 1 SER A 553 160.82 61.91 REMARK 500 1 GLU A 554 37.80 -169.60 REMARK 500 1 ASN A 558 -74.65 -77.01 REMARK 500 1 LYS A 562 106.28 39.44 REMARK 500 1 SER A 595 -92.40 37.34 REMARK 500 1 LEU A 596 28.98 -145.92 REMARK 500 2 GLN A 532 161.34 75.68 REMARK 500 2 ALA A 542 82.56 50.72 REMARK 500 2 GLN A 544 -98.49 59.05 REMARK 500 2 ASP A 551 74.19 -69.59 REMARK 500 2 SER A 552 153.68 68.98 REMARK 500 2 GLU A 554 -160.96 -101.06 REMARK 500 2 SER A 555 85.68 76.94 REMARK 500 2 ASN A 558 -80.66 -85.77 REMARK 500 2 LYS A 562 96.63 41.11 REMARK 500 2 SER A 564 29.61 -158.43 REMARK 500 2 SER A 595 121.76 60.95 REMARK 500 3 GLN A 532 96.04 69.76 REMARK 500 3 GLN A 543 -158.38 -115.97 REMARK 500 3 LYS A 545 174.09 62.95 REMARK 500 3 ARG A 548 70.08 -100.70 REMARK 500 3 ASP A 551 -156.08 76.48 REMARK 500 3 GLU A 554 -138.37 -119.29 REMARK 500 3 SER A 555 123.26 72.40 REMARK 500 3 ASN A 558 -82.06 -89.08 REMARK 500 3 LYS A 562 132.25 -6.20 REMARK 500 3 ASN A 571 -31.28 80.70 REMARK 500 3 SER A 595 72.80 -164.80 REMARK 500 4 SER A 530 -148.72 -139.13 REMARK 500 4 SER A 531 -161.57 83.05 REMARK 500 4 GLN A 532 166.89 76.35 REMARK 500 4 ALA A 542 70.58 54.69 REMARK 500 4 GLN A 543 -51.96 -179.59 REMARK 500 4 GLN A 544 72.59 56.96 REMARK 500 4 SER A 550 -99.12 -91.51 REMARK 500 4 ASN A 558 -81.92 -89.97 REMARK 500 4 ARG A 561 174.27 -48.50 REMARK 500 4 SER A 564 -23.50 172.48 REMARK 500 4 SER A 595 -51.52 -147.64 REMARK 500 4 LEU A 596 157.64 63.71 REMARK 500 5 ARG A 540 -145.30 83.84 REMARK 500 5 ALA A 542 -155.82 -70.32 REMARK 500 5 SER A 550 -81.55 -88.53 REMARK 500 5 SER A 552 144.57 71.83 REMARK 500 5 ASN A 558 -84.93 -88.99 REMARK 500 REMARK 500 THIS ENTRY HAS 250 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 556 SG REMARK 620 2 CYS A 559 SG 109.2 REMARK 620 3 CYS A 576 SG 110.3 108.3 REMARK 620 4 CYS A 580 SG 110.8 109.6 108.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 567 SG REMARK 620 2 CYS A 570 SG 109.5 REMARK 620 3 HIS A 588 NE2 109.6 108.8 REMARK 620 4 CYS A 592 SG 110.4 109.7 108.7 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 31200 RELATED DB: BMRB REMARK 900 ETO2 MYND BOUND TO MPPL PEPTIDE FROM GATAD2A DBREF 9DE2 A 527 548 PDB 9DE2 9DE2 527 548 DBREF 9DE2 A 551 597 UNP O75081 MTG16_HUMAN 551 597 SEQADV 9DE2 GLY A 549 PDB LINKER SEQADV 9DE2 SER A 550 PDB LINKER SEQRES 1 A 71 GLY SER ALA SER SER GLN VAL VAL MET PRO PRO LEU VAL SEQRES 2 A 71 ARG GLY ALA GLN GLN LYS ASN GLY ARG GLY SER ASP SER SEQRES 3 A 71 SER GLU SER CYS TRP ASN CYS GLY ARG LYS ALA SER GLU SEQRES 4 A 71 THR CYS SER GLY CYS ASN ALA ALA ARG TYR CYS GLY SER SEQRES 5 A 71 PHE CYS GLN HIS ARG ASP TRP GLU LYS HIS HIS HIS VAL SEQRES 6 A 71 CYS GLY GLN SER LEU GLN HET ZN A 601 1 HET ZN A 602 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 AA1 GLY A 577 HIS A 589 1 13 SHEET 1 AA1 3 LEU A 538 ARG A 540 0 SHEET 2 AA1 3 GLU A 565 CYS A 567 -1 O THR A 566 N VAL A 539 SHEET 3 AA1 3 ARG A 574 TYR A 575 -1 O TYR A 575 N GLU A 565 LINK SG CYS A 556 ZN ZN A 601 1555 1555 2.36 LINK SG CYS A 559 ZN ZN A 601 1555 1555 2.34 LINK SG CYS A 567 ZN ZN A 602 1555 1555 2.35 LINK SG CYS A 570 ZN ZN A 602 1555 1555 2.35 LINK SG CYS A 576 ZN ZN A 601 1555 1555 2.34 LINK SG CYS A 580 ZN ZN A 601 1555 1555 2.34 LINK NE2 HIS A 588 ZN ZN A 602 1555 1555 2.06 LINK SG CYS A 592 ZN ZN A 602 1555 1555 2.34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 TER 1021 GLN A 597 HETATM 1022 ZN ZN A 601 -11.187 3.731 -1.794 1.00 0.00 ZN HETATM 1023 ZN ZN A 602 1.155 -4.043 -1.309 1.00 0.00 ZN ENDMDL MODEL 2 TER 1021 GLN A 597 HETATM 1022 ZN ZN A 601 -10.903 3.669 -2.258 1.00 0.00 ZN HETATM 1023 ZN ZN A 602 0.550 -3.618 -1.128 1.00 0.00 ZN ENDMDL MODEL 3 TER 1021 GLN A 597 HETATM 1022 ZN ZN A 601 -10.328 3.970 -2.587 1.00 0.00 ZN HETATM 1023 ZN ZN A 602 0.652 -3.415 -1.587 1.00 0.00 ZN ENDMDL MODEL 4 TER 1021 GLN A 597 HETATM 1022 ZN ZN A 601 -10.254 3.788 -2.678 1.00 0.00 ZN HETATM 1023 ZN ZN A 602 0.888 -3.599 -1.681 1.00 0.00 ZN ENDMDL MODEL 5 TER 1021 GLN A 597 HETATM 1022 ZN ZN A 601 -10.104 3.940 -2.622 1.00 0.00 ZN HETATM 1023 ZN ZN A 602 0.671 -3.010 -1.895 1.00 0.00 ZN ENDMDL MODEL 6 TER 1021 GLN A 597 HETATM 1022 ZN ZN A 601 -10.466 3.988 -2.587 1.00 0.00 ZN HETATM 1023 ZN ZN A 602 0.705 -3.385 -1.494 1.00 0.00 ZN ENDMDL MODEL 7 TER 1021 GLN A 597 HETATM 1022 ZN ZN A 601 -10.046 3.846 -2.495 1.00 0.00 ZN HETATM 1023 ZN ZN A 602 0.569 -2.975 -1.882 1.00 0.00 ZN ENDMDL MODEL 8 TER 1021 GLN A 597 HETATM 1022 ZN ZN A 601 -10.983 3.799 -2.226 1.00 0.00 ZN HETATM 1023 ZN ZN A 602 0.737 -3.571 -1.615 1.00 0.00 ZN ENDMDL MODEL 9 TER 1021 GLN A 597 HETATM 1022 ZN ZN A 601 -10.341 3.880 -2.487 1.00 0.00 ZN HETATM 1023 ZN ZN A 602 0.348 -3.480 -1.430 1.00 0.00 ZN ENDMDL MODEL 10 TER 1021 GLN A 597 HETATM 1022 ZN ZN A 601 -10.602 3.203 -2.586 1.00 0.00 ZN HETATM 1023 ZN ZN A 602 0.799 -3.576 -1.556 1.00 0.00 ZN ENDMDL MODEL 11 TER 1021 GLN A 597 HETATM 1022 ZN ZN A 601 -11.148 3.327 -1.833 1.00 0.00 ZN HETATM 1023 ZN ZN A 602 0.740 -3.351 -1.786 1.00 0.00 ZN ENDMDL MODEL 12 TER 1021 GLN A 597 HETATM 1022 ZN ZN A 601 -10.515 3.888 -2.377 1.00 0.00 ZN HETATM 1023 ZN ZN A 602 0.536 -3.224 -1.615 1.00 0.00 ZN ENDMDL MODEL 13 TER 1021 GLN A 597 HETATM 1022 ZN ZN A 601 -10.127 3.847 -2.500 1.00 0.00 ZN HETATM 1023 ZN ZN A 602 0.541 -3.262 -1.789 1.00 0.00 ZN ENDMDL MODEL 14 TER 1021 GLN A 597 HETATM 1022 ZN ZN A 601 -11.501 3.712 -2.668 1.00 0.00 ZN HETATM 1023 ZN ZN A 602 0.979 -3.287 -1.787 1.00 0.00 ZN ENDMDL MODEL 15 TER 1021 GLN A 597 HETATM 1022 ZN ZN A 601 -10.536 4.125 -2.447 1.00 0.00 ZN HETATM 1023 ZN ZN A 602 0.495 -3.485 -1.411 1.00 0.00 ZN ENDMDL MODEL 16 TER 1021 GLN A 597 HETATM 1022 ZN ZN A 601 -10.605 3.980 -2.549 1.00 0.00 ZN HETATM 1023 ZN ZN A 602 1.144 -3.879 -1.619 1.00 0.00 ZN ENDMDL MODEL 17 TER 1021 GLN A 597 HETATM 1022 ZN ZN A 601 -10.190 3.923 -2.561 1.00 0.00 ZN HETATM 1023 ZN ZN A 602 0.658 -3.322 -1.841 1.00 0.00 ZN ENDMDL MODEL 18 TER 1021 GLN A 597 HETATM 1022 ZN ZN A 601 -11.398 3.786 -2.276 1.00 0.00 ZN HETATM 1023 ZN ZN A 602 1.239 -3.613 -1.451 1.00 0.00 ZN ENDMDL MODEL 19 TER 1021 GLN A 597 HETATM 1022 ZN ZN A 601 -10.962 3.604 -2.237 1.00 0.00 ZN HETATM 1023 ZN ZN A 602 0.702 -3.634 -1.545 1.00 0.00 ZN ENDMDL MODEL 20 TER 1021 GLN A 597 HETATM 1022 ZN ZN A 601 -10.488 3.900 -2.610 1.00 0.00 ZN HETATM 1023 ZN ZN A 602 0.947 -3.963 -1.524 1.00 0.00 ZN ENDMDL CONECT 407 1022 CONECT 455 1022 CONECT 568 1023 CONECT 596 1023 CONECT 685 1022 CONECT 733 1022 CONECT 879 1023 CONECT 944 1023 CONECT 1022 407 455 685 733 CONECT 1023 568 596 879 944 MASTER 175 0 2 1 3 0 0 6 535 1 10 6 END