data_9DE6 # _entry.id 9DE6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.402 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9DE6 pdb_00009de6 10.2210/pdb9de6/pdb WWPDB D_1000287915 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-03-12 ? 2 'Structure model' 1 1 2025-03-19 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.page_last' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9DE6 _pdbx_database_status.recvd_initial_deposition_date 2024-08-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email jinwei.zhang@nih.gov _pdbx_contact_author.name_first Jinwei _pdbx_contact_author.name_last Zhang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2114-173X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bou-Nader, C.' 1 0000-0003-0955-0204 'Zhang, J.' 2 0000-0002-2114-173X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 16 _citation.language ? _citation.page_first 2252 _citation.page_last 2252 _citation.title 'Structures of complete HIV-1 TAR RNA portray a dynamic platform poised for protein binding and structural remodeling.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-025-57519-w _citation.pdbx_database_id_PubMed 40050622 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bou-Nader, C.' 1 ? primary 'Link, K.A.' 2 ? primary 'Suddala, K.C.' 3 ? primary 'Knutson, J.R.' 4 ? primary 'Zhang, J.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (57-MER)' 18459.848 2 ? 'U31G, G32A' ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 water nat water 18.015 6 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(GTP)GUCUCUCUGGUUAGACCAGAUCUGAGCCGAAAAGCUCUCUGGCUAACUAGGGAACC' _entity_poly.pdbx_seq_one_letter_code_can GGUCUCUCUGGUUAGACCAGAUCUGAGCCGAAAAGCUCUCUGGCUAACUAGGGAACC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 U n 1 4 C n 1 5 U n 1 6 C n 1 7 U n 1 8 C n 1 9 U n 1 10 G n 1 11 G n 1 12 U n 1 13 U n 1 14 A n 1 15 G n 1 16 A n 1 17 C n 1 18 C n 1 19 A n 1 20 G n 1 21 A n 1 22 U n 1 23 C n 1 24 U n 1 25 G n 1 26 A n 1 27 G n 1 28 C n 1 29 C n 1 30 G n 1 31 A n 1 32 A n 1 33 A n 1 34 A n 1 35 G n 1 36 C n 1 37 U n 1 38 C n 1 39 U n 1 40 C n 1 41 U n 1 42 G n 1 43 G n 1 44 C n 1 45 U n 1 46 A n 1 47 A n 1 48 C n 1 49 U n 1 50 A n 1 51 G n 1 52 G n 1 53 G n 1 54 A n 1 55 A n 1 56 C n 1 57 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 57 _pdbx_entity_src_syn.organism_scientific 'Human immunodeficiency virus 1' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 11676 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 2 2 GTP GTP A . n A 1 2 G 2 3 3 G G A . n A 1 3 U 3 4 4 U U A . n A 1 4 C 4 5 5 C C A . n A 1 5 U 5 6 6 U U A . n A 1 6 C 6 7 7 C C A . n A 1 7 U 7 8 8 U U A . n A 1 8 C 8 9 9 C C A . n A 1 9 U 9 10 10 U U A . n A 1 10 G 10 11 11 G G A . n A 1 11 G 11 12 12 G G A . n A 1 12 U 12 13 13 U U A . n A 1 13 U 13 14 14 U U A . n A 1 14 A 14 15 15 A A A . n A 1 15 G 15 16 16 G G A . n A 1 16 A 16 17 17 A A A . n A 1 17 C 17 18 18 C C A . n A 1 18 C 18 19 19 C C A . n A 1 19 A 19 20 20 A A A . n A 1 20 G 20 21 21 G G A . n A 1 21 A 21 22 22 A A A . n A 1 22 U 22 23 23 U U A . n A 1 23 C 23 24 24 C C A . n A 1 24 U 24 25 25 U U A . n A 1 25 G 25 26 26 G G A . n A 1 26 A 26 27 27 A A A . n A 1 27 G 27 28 28 G G A . n A 1 28 C 28 29 29 C C A . n A 1 29 C 29 30 30 C C A . n A 1 30 G 30 31 31 G G A . n A 1 31 A 31 32 32 A A A . n A 1 32 A 32 33 33 A A A . n A 1 33 A 33 34 34 A A A . n A 1 34 A 34 35 35 A A A . n A 1 35 G 35 36 36 G G A . n A 1 36 C 36 37 37 C C A . n A 1 37 U 37 38 38 U U A . n A 1 38 C 38 39 39 C C A . n A 1 39 U 39 40 40 U U A . n A 1 40 C 40 41 41 C C A . n A 1 41 U 41 42 42 U U A . n A 1 42 G 42 43 43 G G A . n A 1 43 G 43 44 44 G G A . n A 1 44 C 44 45 45 C C A . n A 1 45 U 45 46 46 U U A . n A 1 46 A 46 47 47 A A A . n A 1 47 A 47 48 48 A A A . n A 1 48 C 48 49 49 C C A . n A 1 49 U 49 50 50 U U A . n A 1 50 A 50 51 51 A A A . n A 1 51 G 51 52 52 G G A . n A 1 52 G 52 53 53 G G A . n A 1 53 G 53 54 54 G G A . n A 1 54 A 54 55 55 A A A . n A 1 55 A 55 56 56 A A A . n A 1 56 C 56 57 57 C C A . n A 1 57 C 57 58 58 C C A . n B 1 1 GTP 1 2 2 GTP GTP B . n B 1 2 G 2 3 3 G G B . n B 1 3 U 3 4 4 U U B . n B 1 4 C 4 5 5 C C B . n B 1 5 U 5 6 6 U U B . n B 1 6 C 6 7 7 C C B . n B 1 7 U 7 8 8 U U B . n B 1 8 C 8 9 9 C C B . n B 1 9 U 9 10 10 U U B . n B 1 10 G 10 11 11 G G B . n B 1 11 G 11 12 12 G G B . n B 1 12 U 12 13 13 U U B . n B 1 13 U 13 14 14 U U B . n B 1 14 A 14 15 15 A A B . n B 1 15 G 15 16 16 G G B . n B 1 16 A 16 17 17 A A B . n B 1 17 C 17 18 18 C C B . n B 1 18 C 18 19 19 C C B . n B 1 19 A 19 20 20 A A B . n B 1 20 G 20 21 21 G G B . n B 1 21 A 21 22 22 A A B . n B 1 22 U 22 23 23 U U B . n B 1 23 C 23 24 ? ? ? B . n B 1 24 U 24 25 25 U U B . n B 1 25 G 25 26 26 G G B . n B 1 26 A 26 27 27 A A B . n B 1 27 G 27 28 28 G G B . n B 1 28 C 28 29 29 C C B . n B 1 29 C 29 30 30 C C B . n B 1 30 G 30 31 31 G G B . n B 1 31 A 31 32 32 A A B . n B 1 32 A 32 33 33 A A B . n B 1 33 A 33 34 34 A A B . n B 1 34 A 34 35 35 A A B . n B 1 35 G 35 36 36 G G B . n B 1 36 C 36 37 37 C C B . n B 1 37 U 37 38 38 U U B . n B 1 38 C 38 39 39 C C B . n B 1 39 U 39 40 40 U U B . n B 1 40 C 40 41 41 C C B . n B 1 41 U 41 42 42 U U B . n B 1 42 G 42 43 43 G G B . n B 1 43 G 43 44 44 G G B . n B 1 44 C 44 45 45 C C B . n B 1 45 U 45 46 46 U U B . n B 1 46 A 46 47 47 A A B . n B 1 47 A 47 48 48 A A B . n B 1 48 C 48 49 49 C C B . n B 1 49 U 49 50 50 U U B . n B 1 50 A 50 51 51 A A B . n B 1 51 G 51 52 52 G G B . n B 1 52 G 52 53 53 G G B . n B 1 53 G 53 54 54 G G B . n B 1 54 A 54 55 55 A A B . n B 1 55 A 55 56 56 A A B . n B 1 56 C 56 57 57 C C B . n B 1 57 C 57 58 58 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 101 59 MG MG A . D 2 MG 1 101 59 MG MG B . E 3 HOH 1 201 61 HOH HOH A . E 3 HOH 2 202 60 HOH HOH A . E 3 HOH 3 203 62 HOH HOH A . F 3 HOH 1 201 60 HOH HOH B . F 3 HOH 2 202 61 HOH HOH B . F 3 HOH 3 203 62 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A U 23 ? N1 ? A U 22 N1 2 1 Y 1 A U 23 ? C2 ? A U 22 C2 3 1 Y 1 A U 23 ? O2 ? A U 22 O2 4 1 Y 1 A U 23 ? N3 ? A U 22 N3 5 1 Y 1 A U 23 ? C4 ? A U 22 C4 6 1 Y 1 A U 23 ? O4 ? A U 22 O4 7 1 Y 1 A U 23 ? C5 ? A U 22 C5 8 1 Y 1 A U 23 ? C6 ? A U 22 C6 9 1 Y 1 A C 24 ? N1 ? A C 23 N1 10 1 Y 1 A C 24 ? C2 ? A C 23 C2 11 1 Y 1 A C 24 ? O2 ? A C 23 O2 12 1 Y 1 A C 24 ? N3 ? A C 23 N3 13 1 Y 1 A C 24 ? C4 ? A C 23 C4 14 1 Y 1 A C 24 ? N4 ? A C 23 N4 15 1 Y 1 A C 24 ? C5 ? A C 23 C5 16 1 Y 1 A C 24 ? C6 ? A C 23 C6 17 1 Y 1 A U 25 ? N1 ? A U 24 N1 18 1 Y 1 A U 25 ? C2 ? A U 24 C2 19 1 Y 1 A U 25 ? O2 ? A U 24 O2 20 1 Y 1 A U 25 ? N3 ? A U 24 N3 21 1 Y 1 A U 25 ? C4 ? A U 24 C4 22 1 Y 1 A U 25 ? O4 ? A U 24 O4 23 1 Y 1 A U 25 ? C5 ? A U 24 C5 24 1 Y 1 A U 25 ? C6 ? A U 24 C6 25 1 Y 1 B U 23 ? N1 ? B U 22 N1 26 1 Y 1 B U 23 ? C2 ? B U 22 C2 27 1 Y 1 B U 23 ? O2 ? B U 22 O2 28 1 Y 1 B U 23 ? N3 ? B U 22 N3 29 1 Y 1 B U 23 ? C4 ? B U 22 C4 30 1 Y 1 B U 23 ? O4 ? B U 22 O4 31 1 Y 1 B U 23 ? C5 ? B U 22 C5 32 1 Y 1 B U 23 ? C6 ? B U 22 C6 33 1 Y 1 B U 25 ? N1 ? B U 24 N1 34 1 Y 1 B U 25 ? C2 ? B U 24 C2 35 1 Y 1 B U 25 ? O2 ? B U 24 O2 36 1 Y 1 B U 25 ? N3 ? B U 24 N3 37 1 Y 1 B U 25 ? C4 ? B U 24 C4 38 1 Y 1 B U 25 ? O4 ? B U 24 O4 39 1 Y 1 B U 25 ? C5 ? B U 24 C5 40 1 Y 1 B U 25 ? C6 ? B U 24 C6 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 93.440 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9DE6 _cell.details ? _cell.formula_units_Z ? _cell.length_a 61.253 _cell.length_a_esd ? _cell.length_b 41.982 _cell.length_b_esd ? _cell.length_c 68.570 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9DE6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9DE6 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.38 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 48.40 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '12 mM NaCl, 80 mM KCl, 50 mM sodium cacodylate pH 5.5, 2 mM hexamine cobalt and 45% v/v MPD' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-12-19 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 69.800 _reflns.entry_id 9DE6 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.35 _reflns.d_resolution_low 35.79 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 17435 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.46 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.6 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.38 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.35 _reflns_shell.d_res_low 2.434 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.63 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 8976 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.868 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 185.960 _refine.B_iso_mean 100.1941 _refine.B_iso_min 71.010 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9DE6 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.3500 _refine.ls_d_res_low 35.7900 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 14405 _refine.ls_number_reflns_R_free 734 _refine.ls_number_reflns_R_work 13671 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.2300 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2652 _refine.ls_R_factor_R_free 0.2825 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2643 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 48.7400 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3700 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.3500 _refine_hist.d_res_low 35.7900 _refine_hist.number_atoms_solvent 6 _refine_hist.number_atoms_total 2392 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 113 _refine_hist.pdbx_B_iso_mean_ligand 92.18 _refine_hist.pdbx_B_iso_mean_solvent 88.72 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2384 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight _refine_ls_restr_ncs.pdbx_ens_id 'X-RAY DIFFRACTION' 1 ? ? ? ? ? 1 TORSIONAL ? A 1350 10.746 ? 1 'X-RAY DIFFRACTION' 2 ? ? ? ? ? 2 TORSIONAL ? B 1350 10.746 ? 1 # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.3500 2.5300 2825 . 127 2698 97.0000 . . . 0.0000 0.4929 . . . . . . . 5 . . . 0.4696 'X-RAY DIFFRACTION' 2.5300 2.7800 2891 . 115 2776 98.0000 . . . 0.0000 0.4970 . . . . . . . 5 . . . 0.5849 'X-RAY DIFFRACTION' 2.7800 3.1900 2831 . 161 2670 96.0000 . . . 0.0000 0.3912 . . . . . . . 5 . . . 0.3904 'X-RAY DIFFRACTION' 3.1900 4.0100 2815 . 165 2650 95.0000 . . . 0.0000 0.2802 . . . . . . . 5 . . . 0.2689 'X-RAY DIFFRACTION' 4.0100 35.7900 3043 . 166 2877 100.0000 . . . 0.0000 0.1953 . . . . . . . 5 . . . 0.2338 # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 '(chain A and (resid 2 through 23 or resid 25 through 59))' 1 2 'chain B' # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A GTP 1 . A U 22 . A GTP 2 A U 23 ? '(chain A and (resid 2 through 23 or resid 25 through 59))' 1 1 2 A U 24 . C MG . . A U 25 A MG 101 ? '(chain A and (resid 2 through 23 or resid 25 through 59))' 1 2 1 B GTP 1 . F HOH . . B GTP 2 B HOH 203 ? 'chain B' # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 9DE6 _struct.title 'Structure of full-length HIV TAR RNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9DE6 _struct_keywords.text 'viral RNA, HIV RNA, TAR RNA, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code MW061005.1 _struct_ref.pdbx_db_accession 1945658931 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GGUCUCUCUGGUUAGACCAGAUCUGAGCCUGAAAGCUCUCUGGCUAACUAGGGAACC _struct_ref.pdbx_align_begin 5187 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9DE6 A 1 ? 57 ? 1945658931 5187 ? 5243 ? 2 58 2 1 9DE6 B 1 ? 57 ? 1945658931 5187 ? 5243 ? 2 58 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9DE6 G A 30 ? GB 1945658931 U 5216 'engineered mutation' 31 1 1 9DE6 A A 31 ? GB 1945658931 G 5217 'engineered mutation' 32 2 2 9DE6 G B 30 ? GB 1945658931 U 5216 'engineered mutation' 31 3 2 9DE6 A B 31 ? GB 1945658931 G 5217 'engineered mutation' 32 4 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E 2 1 B,D,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 2 A G 3 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale2 covale both ? B GTP 1 "O3'" ? ? ? 1_555 B G 2 P ? ? B GTP 2 B G 3 1_555 ? ? ? ? ? ? ? 1.606 ? ? metalc1 metalc ? ? A G 51 O6 ? ? ? 1_555 C MG . MG ? ? A G 52 A MG 101 1_555 ? ? ? ? ? ? ? 2.706 ? ? metalc2 metalc ? ? A G 52 O6 ? ? ? 1_555 C MG . MG ? ? A G 53 A MG 101 1_555 ? ? ? ? ? ? ? 2.458 ? ? metalc3 metalc ? ? A G 53 O6 ? ? ? 1_555 C MG . MG ? ? A G 54 A MG 101 1_555 ? ? ? ? ? ? ? 2.927 ? ? metalc4 metalc ? ? B U 9 O4 ? ? ? 1_555 D MG . MG ? ? B U 10 B MG 101 1_555 ? ? ? ? ? ? ? 2.700 ? ? metalc5 metalc ? ? B G 10 O6 ? ? ? 1_555 D MG . MG ? ? B G 11 B MG 101 1_555 ? ? ? ? ? ? ? 2.418 ? ? metalc6 metalc ? ? B U 49 O4 ? ? ? 1_555 D MG . MG ? ? B U 50 B MG 101 1_555 ? ? ? ? ? ? ? 2.898 ? ? hydrog1 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 A C 57 N3 ? ? A GTP 2 A C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A GTP 1 N2 ? ? ? 1_555 A C 57 O2 ? ? A GTP 2 A C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A GTP 1 O6 ? ? ? 1_555 A C 57 N4 ? ? A GTP 2 A C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 3 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 3 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 3 A C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 55 N1 ? ? A U 4 A A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 55 N6 ? ? A U 4 A A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 51 O6 ? ? A C 5 A G 52 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog10 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 54 N1 ? ? A U 6 A A 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 54 N6 ? ? A U 6 A A 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 53 N1 ? ? A C 7 A G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 53 O6 ? ? A C 7 A G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 53 N2 ? ? A C 7 A G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 7 N3 ? ? ? 1_555 A G 52 O6 ? ? A U 8 A G 53 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog16 hydrog ? ? A U 7 O2 ? ? ? 1_555 A G 52 N1 ? ? A U 8 A G 53 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog17 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 51 N1 ? ? A C 9 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 51 O6 ? ? A C 9 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 51 N2 ? ? A C 9 A G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 50 N1 ? ? A U 10 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 50 N6 ? ? A U 10 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 10 N1 ? ? ? 1_555 A U 49 O2 ? ? A G 11 A U 50 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog23 hydrog ? ? A G 10 O6 ? ? ? 1_555 A U 49 N3 ? ? A G 11 A U 50 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog24 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 12 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 12 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 12 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 47 N1 ? ? A U 13 A A 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 47 N6 ? ? A U 13 A A 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 46 N1 ? ? A U 14 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 46 N6 ? ? A U 14 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 14 N1 ? ? ? 1_555 A U 45 N3 ? ? A A 15 A U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A A 14 N6 ? ? ? 1_555 A U 45 O4 ? ? A A 15 A U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 44 N3 ? ? A G 16 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 44 O2 ? ? A G 16 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 44 N4 ? ? A G 16 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 17 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 18 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 17 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 18 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 17 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 18 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 42 N1 ? ? A C 19 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 42 O6 ? ? A C 19 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 42 N2 ? ? A C 19 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A A 19 N1 ? ? ? 1_555 A U 41 N3 ? ? A A 20 A U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A A 19 N6 ? ? ? 1_555 A U 41 O4 ? ? A A 20 A U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 21 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 20 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 21 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 20 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 21 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A A 21 N1 ? ? ? 1_555 A U 39 N3 ? ? A A 22 A U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A A 21 N6 ? ? ? 1_555 A U 39 O4 ? ? A A 22 A U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 38 N3 ? ? A G 26 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 38 O2 ? ? A G 26 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 38 N4 ? ? A G 26 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A A 26 N1 ? ? ? 1_555 A U 37 N3 ? ? A A 27 A U 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A A 26 N6 ? ? ? 1_555 A U 37 O4 ? ? A A 27 A U 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 28 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 28 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 28 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 28 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 29 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 28 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 29 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 28 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 29 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 29 N3 ? ? ? 1_555 A A 34 N6 ? ? A C 30 A A 35 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog61 hydrog ? ? A G 30 N2 ? ? ? 1_555 A A 33 N7 ? ? A G 31 A A 34 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog62 hydrog ? ? B GTP 1 N2 ? ? ? 1_555 B C 57 O2 ? ? B GTP 2 B C 58 1_555 ? ? ? ? ? ? 'GTP-C MISPAIR' ? ? ? hydrog63 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 56 N3 ? ? B G 3 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 56 O2 ? ? B G 3 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 56 N4 ? ? B G 3 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B U 3 N3 ? ? ? 1_555 B A 55 N1 ? ? B U 4 B A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B U 3 O4 ? ? ? 1_555 B A 55 N6 ? ? B U 4 B A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B C 4 N4 ? ? ? 1_555 B C 56 O2 ? ? B C 5 B C 57 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog69 hydrog ? ? B U 5 N3 ? ? ? 1_555 B A 54 N1 ? ? B U 6 B A 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B U 5 O4 ? ? ? 1_555 B A 54 N6 ? ? B U 6 B A 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 53 N1 ? ? B C 7 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 53 O6 ? ? B C 7 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 53 N2 ? ? B C 7 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B U 7 N3 ? ? ? 1_555 B G 52 O6 ? ? B U 8 B G 53 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog75 hydrog ? ? B U 7 O2 ? ? ? 1_555 B G 52 N1 ? ? B U 8 B G 53 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog76 hydrog ? ? B C 8 N3 ? ? ? 1_555 B G 51 N1 ? ? B C 9 B G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B C 8 N4 ? ? ? 1_555 B G 51 O6 ? ? B C 9 B G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B C 8 O2 ? ? ? 1_555 B G 51 N2 ? ? B C 9 B G 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 50 N1 ? ? B U 10 B A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 50 N6 ? ? B U 10 B A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B G 10 N1 ? ? ? 1_555 B U 49 O2 ? ? B G 11 B U 50 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog82 hydrog ? ? B G 10 O6 ? ? ? 1_555 B U 49 N3 ? ? B G 11 B U 50 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog83 hydrog ? ? B G 11 N1 ? ? ? 1_555 B C 48 N3 ? ? B G 12 B C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 11 N2 ? ? ? 1_555 B C 48 O2 ? ? B G 12 B C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B G 11 O6 ? ? ? 1_555 B C 48 N4 ? ? B G 12 B C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B U 12 N3 ? ? ? 1_555 B A 47 N1 ? ? B U 13 B A 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B U 12 O4 ? ? ? 1_555 B A 47 N6 ? ? B U 13 B A 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B U 13 N3 ? ? ? 1_555 B A 46 N1 ? ? B U 14 B A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B U 13 O4 ? ? ? 1_555 B A 46 N6 ? ? B U 14 B A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B A 14 N1 ? ? ? 1_555 B U 45 N3 ? ? B A 15 B U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B A 14 N6 ? ? ? 1_555 B U 45 O4 ? ? B A 15 B U 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B G 15 N1 ? ? ? 1_555 B C 44 N3 ? ? B G 16 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B G 15 N2 ? ? ? 1_555 B C 44 O2 ? ? B G 16 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B G 15 O6 ? ? ? 1_555 B C 44 N4 ? ? B G 16 B C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B C 17 N3 ? ? ? 1_555 B G 43 N1 ? ? B C 18 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B C 17 N4 ? ? ? 1_555 B G 43 O6 ? ? B C 18 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B C 17 O2 ? ? ? 1_555 B G 43 N2 ? ? B C 18 B G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B C 18 N3 ? ? ? 1_555 B G 42 N1 ? ? B C 19 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B C 18 N4 ? ? ? 1_555 B G 42 O6 ? ? B C 19 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B C 18 O2 ? ? ? 1_555 B G 42 N2 ? ? B C 19 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B A 19 N1 ? ? ? 1_555 B U 41 N3 ? ? B A 20 B U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B A 19 N6 ? ? ? 1_555 B U 41 O4 ? ? B A 20 B U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B G 20 N1 ? ? ? 1_555 B C 40 N3 ? ? B G 21 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B G 20 N2 ? ? ? 1_555 B C 40 O2 ? ? B G 21 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B G 20 O6 ? ? ? 1_555 B C 40 N4 ? ? B G 21 B C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B A 21 N1 ? ? ? 1_555 B U 39 N3 ? ? B A 22 B U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B A 21 N6 ? ? ? 1_555 B U 39 O4 ? ? B A 22 B U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B G 25 N1 ? ? ? 1_555 B C 38 N3 ? ? B G 26 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B G 25 N2 ? ? ? 1_555 B C 38 O2 ? ? B G 26 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B G 25 O6 ? ? ? 1_555 B C 38 N4 ? ? B G 26 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B A 26 N1 ? ? ? 1_555 B U 37 N3 ? ? B A 27 B U 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? B A 26 N6 ? ? ? 1_555 B U 37 O4 ? ? B A 27 B U 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? B G 27 N1 ? ? ? 1_555 B C 36 N3 ? ? B G 28 B C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? B G 27 N2 ? ? ? 1_555 B C 36 O2 ? ? B G 28 B C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? B G 27 O6 ? ? ? 1_555 B C 36 N4 ? ? B G 28 B C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? B C 28 N3 ? ? ? 1_555 B G 35 N1 ? ? B C 29 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? B C 28 N4 ? ? ? 1_555 B G 35 O6 ? ? B C 29 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? B C 28 O2 ? ? ? 1_555 B G 35 N2 ? ? B C 29 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? B C 29 N3 ? ? ? 1_555 B A 34 N6 ? ? B C 30 B A 35 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog120 hydrog ? ? B G 30 N2 ? ? ? 1_555 B A 33 N7 ? ? B G 31 B A 34 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog121 hydrog ? ? B G 30 N3 ? ? ? 1_555 B A 33 N6 ? ? B G 31 B A 34 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 51 ? A G 52 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O6 ? A G 52 ? A G 53 ? 1_555 86.5 ? 2 O6 ? A G 51 ? A G 52 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O6 ? A G 53 ? A G 54 ? 1_555 160.5 ? 3 O6 ? A G 52 ? A G 53 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O6 ? A G 53 ? A G 54 ? 1_555 74.0 ? 4 O4 ? B U 9 ? B U 10 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O6 ? B G 10 ? B G 11 ? 1_555 81.2 ? 5 O4 ? B U 9 ? B U 10 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O4 ? B U 49 ? B U 50 ? 1_555 109.7 ? 6 O6 ? B G 10 ? B G 11 ? 1_555 MG ? D MG . ? B MG 101 ? 1_555 O4 ? B U 49 ? B U 50 ? 1_555 86.6 ? # _pdbx_entry_details.entry_id 9DE6 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O2'" _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 C _pdbx_validate_symm_contact.auth_seq_id_1 9 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 "O2'" _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 A _pdbx_validate_symm_contact.auth_seq_id_2 17 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_554 _pdbx_validate_symm_contact.dist 2.09 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GTP 1 A GTP 2 ? G 'modified residue' 2 B GTP 1 B GTP 2 ? G 'modified residue' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -5.7105 _pdbx_refine_tls.origin_y -6.6556 _pdbx_refine_tls.origin_z -22.0854 _pdbx_refine_tls.T[1][1] 0.6369 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.0001 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] 0.3280 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.7324 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.0392 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.8986 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 0.1054 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] -0.6058 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -1.7110 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 0.1100 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 0.8652 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 2.4850 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] -0.0762 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.3660 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] -0.0109 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.0271 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] 0.0576 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] 0.0217 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.0110 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] 0.3098 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 0.0912 _pdbx_refine_tls.S[3][3]_esd ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 2 ? ? ? A 62 ? ? all 2 'X-RAY DIFFRACTION' 1 ? ? B 2 ? ? ? B 62 ? ? all # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id B _pdbx_unobs_or_zero_occ_residues.auth_comp_id C _pdbx_unobs_or_zero_occ_residues.auth_seq_id 24 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id B _pdbx_unobs_or_zero_occ_residues.label_comp_id C _pdbx_unobs_or_zero_occ_residues.label_seq_id 23 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GTP PG P N N 111 GTP O1G O N N 112 GTP O2G O N N 113 GTP O3G O N N 114 GTP O3B O N N 115 GTP PB P N N 116 GTP O1B O N N 117 GTP O2B O N N 118 GTP O3A O N N 119 GTP PA P N N 120 GTP O1A O N N 121 GTP O2A O N N 122 GTP "O5'" O N N 123 GTP "C5'" C N N 124 GTP "C4'" C N R 125 GTP "O4'" O N N 126 GTP "C3'" C N S 127 GTP "O3'" O N N 128 GTP "C2'" C N R 129 GTP "O2'" O N N 130 GTP "C1'" C N R 131 GTP N9 N Y N 132 GTP C8 C Y N 133 GTP N7 N Y N 134 GTP C5 C Y N 135 GTP C6 C N N 136 GTP O6 O N N 137 GTP N1 N N N 138 GTP C2 C N N 139 GTP N2 N N N 140 GTP N3 N N N 141 GTP C4 C Y N 142 GTP HOG2 H N N 143 GTP HOG3 H N N 144 GTP HOB2 H N N 145 GTP HOA2 H N N 146 GTP "H5'" H N N 147 GTP "H5''" H N N 148 GTP "H4'" H N N 149 GTP "H3'" H N N 150 GTP "HO3'" H N N 151 GTP "H2'" H N N 152 GTP "HO2'" H N N 153 GTP "H1'" H N N 154 GTP H8 H N N 155 GTP HN1 H N N 156 GTP HN21 H N N 157 GTP HN22 H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 MG MG MG N N 162 U OP3 O N N 163 U P P N N 164 U OP1 O N N 165 U OP2 O N N 166 U "O5'" O N N 167 U "C5'" C N N 168 U "C4'" C N R 169 U "O4'" O N N 170 U "C3'" C N S 171 U "O3'" O N N 172 U "C2'" C N R 173 U "O2'" O N N 174 U "C1'" C N R 175 U N1 N N N 176 U C2 C N N 177 U O2 O N N 178 U N3 N N N 179 U C4 C N N 180 U O4 O N N 181 U C5 C N N 182 U C6 C N N 183 U HOP3 H N N 184 U HOP2 H N N 185 U "H5'" H N N 186 U "H5''" H N N 187 U "H4'" H N N 188 U "H3'" H N N 189 U "HO3'" H N N 190 U "H2'" H N N 191 U "HO2'" H N N 192 U "H1'" H N N 193 U H3 H N N 194 U H5 H N N 195 U H6 H N N 196 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GTP PG O1G doub N N 116 GTP PG O2G sing N N 117 GTP PG O3G sing N N 118 GTP PG O3B sing N N 119 GTP O2G HOG2 sing N N 120 GTP O3G HOG3 sing N N 121 GTP O3B PB sing N N 122 GTP PB O1B doub N N 123 GTP PB O2B sing N N 124 GTP PB O3A sing N N 125 GTP O2B HOB2 sing N N 126 GTP O3A PA sing N N 127 GTP PA O1A doub N N 128 GTP PA O2A sing N N 129 GTP PA "O5'" sing N N 130 GTP O2A HOA2 sing N N 131 GTP "O5'" "C5'" sing N N 132 GTP "C5'" "C4'" sing N N 133 GTP "C5'" "H5'" sing N N 134 GTP "C5'" "H5''" sing N N 135 GTP "C4'" "O4'" sing N N 136 GTP "C4'" "C3'" sing N N 137 GTP "C4'" "H4'" sing N N 138 GTP "O4'" "C1'" sing N N 139 GTP "C3'" "O3'" sing N N 140 GTP "C3'" "C2'" sing N N 141 GTP "C3'" "H3'" sing N N 142 GTP "O3'" "HO3'" sing N N 143 GTP "C2'" "O2'" sing N N 144 GTP "C2'" "C1'" sing N N 145 GTP "C2'" "H2'" sing N N 146 GTP "O2'" "HO2'" sing N N 147 GTP "C1'" N9 sing N N 148 GTP "C1'" "H1'" sing N N 149 GTP N9 C8 sing Y N 150 GTP N9 C4 sing Y N 151 GTP C8 N7 doub Y N 152 GTP C8 H8 sing N N 153 GTP N7 C5 sing Y N 154 GTP C5 C6 sing N N 155 GTP C5 C4 doub Y N 156 GTP C6 O6 doub N N 157 GTP C6 N1 sing N N 158 GTP N1 C2 sing N N 159 GTP N1 HN1 sing N N 160 GTP C2 N2 sing N N 161 GTP C2 N3 doub N N 162 GTP N2 HN21 sing N N 163 GTP N2 HN22 sing N N 164 GTP N3 C4 sing N N 165 HOH O H1 sing N N 166 HOH O H2 sing N N 167 U OP3 P sing N N 168 U OP3 HOP3 sing N N 169 U P OP1 doub N N 170 U P OP2 sing N N 171 U P "O5'" sing N N 172 U OP2 HOP2 sing N N 173 U "O5'" "C5'" sing N N 174 U "C5'" "C4'" sing N N 175 U "C5'" "H5'" sing N N 176 U "C5'" "H5''" sing N N 177 U "C4'" "O4'" sing N N 178 U "C4'" "C3'" sing N N 179 U "C4'" "H4'" sing N N 180 U "O4'" "C1'" sing N N 181 U "C3'" "O3'" sing N N 182 U "C3'" "C2'" sing N N 183 U "C3'" "H3'" sing N N 184 U "O3'" "HO3'" sing N N 185 U "C2'" "O2'" sing N N 186 U "C2'" "C1'" sing N N 187 U "C2'" "H2'" sing N N 188 U "O2'" "HO2'" sing N N 189 U "C1'" N1 sing N N 190 U "C1'" "H1'" sing N N 191 U N1 C2 sing N N 192 U N1 C6 sing N N 193 U C2 O2 doub N N 194 U C2 N3 sing N N 195 U N3 C4 sing N N 196 U N3 H3 sing N N 197 U C4 O4 doub N N 198 U C4 C5 sing N N 199 U C5 C6 doub N N 200 U C5 H5 sing N N 201 U C6 H6 sing N N 202 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9DE6 'double helix' 9DE6 'a-form double helix' 9DE6 tetraloop 9DE6 'bulge loop' 9DE6 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 33 1_555 A G 30 1_555 -7.851 -5.178 0.917 -22.236 9.820 -48.650 1 A_A34:G31_A A 34 ? A 31 ? ? ? 1 A A 34 1_555 A C 29 1_555 -3.522 -0.698 0.113 3.004 8.075 -9.467 2 A_A35:C30_A A 35 ? A 30 ? ? 1 1 A G 35 1_555 A C 28 1_555 -0.329 -0.205 0.146 6.995 -2.277 1.238 3 A_G36:C29_A A 36 ? A 29 ? 19 1 1 A C 36 1_555 A G 27 1_555 -0.065 -0.159 0.014 10.781 -8.814 -1.447 4 A_C37:G28_A A 37 ? A 28 ? 19 1 1 A U 37 1_555 A A 26 1_555 -0.631 -0.057 -0.047 15.821 -11.667 6.734 5 A_U38:A27_A A 38 ? A 27 ? 20 1 1 A C 38 1_555 A G 25 1_555 -0.036 -0.188 0.091 7.929 -14.007 4.453 6 A_C39:G26_A A 39 ? A 26 ? 19 1 1 A U 39 1_555 A A 21 1_555 -0.334 -0.262 0.211 -2.468 -13.451 -4.244 7 A_U40:A22_A A 40 ? A 22 ? 20 1 1 A C 40 1_555 A G 20 1_555 0.290 -0.195 0.439 6.533 -8.307 1.767 8 A_C41:G21_A A 41 ? A 21 ? 19 1 1 A U 41 1_555 A A 19 1_555 -0.361 0.037 0.294 2.959 -7.989 -3.132 9 A_U42:A20_A A 42 ? A 20 ? 20 1 1 A G 42 1_555 A C 18 1_555 0.118 -0.039 0.227 11.514 -3.725 -2.368 10 A_G43:C19_A A 43 ? A 19 ? 19 1 1 A G 43 1_555 A C 17 1_555 0.300 -0.170 -0.146 3.115 -12.798 5.580 11 A_G44:C18_A A 44 ? A 18 ? 19 1 1 A C 44 1_555 A G 15 1_555 -0.120 -0.276 0.076 3.560 -20.683 -2.469 12 A_C45:G16_A A 45 ? A 16 ? 19 1 1 A U 45 1_555 A A 14 1_555 0.629 -0.162 0.370 5.264 -15.516 2.879 13 A_U46:A15_A A 46 ? A 15 ? 20 1 1 A A 46 1_555 A U 13 1_555 -0.269 -0.171 0.056 2.533 -14.132 -1.197 14 A_A47:U14_A A 47 ? A 14 ? 20 1 1 A A 47 1_555 A U 12 1_555 -0.083 0.016 -0.014 1.444 -11.856 -0.789 15 A_A48:U13_A A 48 ? A 13 ? 20 1 1 A C 48 1_555 A G 11 1_555 -0.268 0.243 0.023 0.674 -13.912 5.116 16 A_C49:G12_A A 49 ? A 12 ? 19 1 1 A U 49 1_555 A G 10 1_555 2.042 -0.418 -0.072 -1.329 -13.565 -2.395 17 A_U50:G11_A A 50 ? A 11 ? 28 1 1 A A 50 1_555 A U 9 1_555 0.408 -0.193 0.186 -0.751 -9.667 -4.450 18 A_A51:U10_A A 51 ? A 10 ? 20 1 1 A G 51 1_555 A C 8 1_555 0.459 -0.010 0.093 -6.580 -16.307 5.398 19 A_G52:C9_A A 52 ? A 9 ? 19 1 1 A G 52 1_555 A U 7 1_555 -1.934 -0.567 0.120 -0.599 -10.377 -1.726 20 A_G53:U8_A A 53 ? A 8 ? 28 1 1 A G 53 1_555 A C 6 1_555 -0.417 -0.209 0.294 1.588 -9.467 3.811 21 A_G54:C7_A A 54 ? A 7 ? 19 1 1 A A 54 1_555 A U 5 1_555 0.117 0.050 0.032 0.303 -12.953 6.914 22 A_A55:U6_A A 55 ? A 6 ? 20 1 1 A A 55 1_555 A U 3 1_555 -0.076 -0.084 -0.202 -3.136 -20.402 -3.046 23 A_A56:U4_A A 56 ? A 4 ? 20 1 1 A C 56 1_555 A G 2 1_555 -0.079 0.005 -0.447 13.964 -23.713 -2.548 24 A_C57:G3_A A 57 ? A 3 ? 19 1 1 A C 57 1_555 A GTP 1 1_555 0.922 -0.002 0.054 5.662 -6.851 3.937 25 A_C58:GTP2_A A 58 ? A 2 ? 19 1 1 B GTP 1 1_555 B C 57 1_555 0.804 0.560 -0.122 -8.160 -6.442 14.289 26 B_GTP2:C58_B B 2 ? B 58 ? ? 1 1 B G 2 1_555 B C 56 1_555 -0.082 -0.025 -0.266 -15.118 -21.331 0.949 27 B_G3:C57_B B 3 ? B 57 ? 19 1 1 B U 3 1_555 B A 55 1_555 0.367 -0.050 0.312 -1.492 -7.318 1.068 28 B_U4:A56_B B 4 ? B 56 ? 20 1 1 B U 5 1_555 B A 54 1_555 -0.065 0.177 -0.560 3.942 -6.824 2.072 29 B_U6:A55_B B 6 ? B 55 ? 20 1 1 B C 6 1_555 B G 53 1_555 -0.268 -0.083 0.149 -0.262 -4.871 4.954 30 B_C7:G54_B B 7 ? B 54 ? 19 1 1 B U 7 1_555 B G 52 1_555 1.878 -0.448 0.093 3.182 -9.092 4.769 31 B_U8:G53_B B 8 ? B 53 ? 28 1 1 B C 8 1_555 B G 51 1_555 -0.465 -0.057 0.461 2.576 -19.767 4.750 32 B_C9:G52_B B 9 ? B 52 ? 19 1 1 B U 9 1_555 B A 50 1_555 -0.231 -0.090 0.543 -1.951 -7.691 -1.012 33 B_U10:A51_B B 10 ? B 51 ? 20 1 1 B G 10 1_555 B U 49 1_555 -1.770 -0.259 0.334 2.612 -15.453 3.403 34 B_G11:U50_B B 11 ? B 50 ? 28 1 1 B G 11 1_555 B C 48 1_555 0.301 0.016 0.074 -3.658 -20.400 0.855 35 B_G12:C49_B B 12 ? B 49 ? 19 1 1 B U 12 1_555 B A 47 1_555 -0.048 -0.063 0.021 -4.981 -18.730 -2.200 36 B_U13:A48_B B 13 ? B 48 ? 20 1 1 B U 13 1_555 B A 46 1_555 0.122 -0.026 0.113 -3.480 -13.516 -2.779 37 B_U14:A47_B B 14 ? B 47 ? 20 1 1 B A 14 1_555 B U 45 1_555 -0.055 -0.151 0.325 -5.150 -10.331 -0.440 38 B_A15:U46_B B 15 ? B 46 ? 20 1 1 B G 15 1_555 B C 44 1_555 0.140 -0.347 0.122 -3.069 -22.379 -3.708 39 B_G16:C45_B B 16 ? B 45 ? 19 1 1 B C 17 1_555 B G 43 1_555 0.208 -0.138 -0.001 -7.552 -9.461 3.025 40 B_C18:G44_B B 18 ? B 44 ? 19 1 1 B C 18 1_555 B G 42 1_555 -0.449 -0.139 0.176 -4.200 -3.884 1.320 41 B_C19:G43_B B 19 ? B 43 ? 19 1 1 B A 19 1_555 B U 41 1_555 -0.500 -0.242 0.320 -1.167 -11.944 3.539 42 B_A20:U42_B B 20 ? B 42 ? 20 1 1 B G 20 1_555 B C 40 1_555 -1.020 -0.158 0.205 -10.726 -8.905 10.302 43 B_G21:C41_B B 21 ? B 41 ? 19 1 1 B A 21 1_555 B U 39 1_555 -0.654 -0.325 -0.040 -1.291 -2.971 -2.756 44 B_A22:U40_B B 22 ? B 40 ? 20 1 1 B G 25 1_555 B C 38 1_555 -0.484 -0.392 0.082 -4.622 -9.690 -1.724 45 B_G26:C39_B B 26 ? B 39 ? 19 1 1 B A 26 1_555 B U 37 1_555 0.267 -0.094 -0.098 -13.954 -9.574 2.662 46 B_A27:U38_B B 27 ? B 38 ? 20 1 1 B G 27 1_555 B C 36 1_555 0.402 -0.035 0.217 -11.391 -10.698 3.030 47 B_G28:C37_B B 28 ? B 37 ? 19 1 1 B C 28 1_555 B G 35 1_555 1.016 -0.465 0.388 -7.691 -4.449 -0.851 48 B_C29:G36_B B 29 ? B 36 ? 19 1 1 B C 29 1_555 B A 34 1_555 3.115 -0.879 0.337 -0.526 4.078 -3.979 49 B_C30:A35_B B 30 ? B 35 ? ? 1 1 B G 30 1_555 B A 33 1_555 6.708 -4.536 0.974 23.001 7.033 -7.204 50 B_G31:A34_B B 31 ? B 34 ? 11 10 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 33 1_555 A G 30 1_555 A A 34 1_555 A C 29 1_555 3.517 -1.463 2.612 -1.388 4.093 45.088 -2.178 -4.662 2.373 5.323 1.805 45.284 1 AA_A34A35:C30G31_AA A 34 ? A 31 ? A 35 ? A 30 ? 1 A A 34 1_555 A C 29 1_555 A G 35 1_555 A C 28 1_555 0.406 -1.458 3.225 -5.034 4.469 42.097 -2.437 -1.045 2.997 6.174 6.955 42.608 2 AA_A35G36:C29C30_AA A 35 ? A 30 ? A 36 ? A 29 ? 1 A G 35 1_555 A C 28 1_555 A C 36 1_555 A G 27 1_555 -0.134 -2.104 3.190 -0.450 -0.254 34.112 -3.547 0.159 3.207 -0.433 0.767 34.116 3 AA_G36C37:G28C29_AA A 36 ? A 29 ? A 37 ? A 28 ? 1 A C 36 1_555 A G 27 1_555 A U 37 1_555 A A 26 1_555 -0.376 -2.136 3.199 -2.166 2.832 22.756 -6.289 0.224 2.937 7.120 5.448 23.030 4 AA_C37U38:A27G28_AA A 37 ? A 28 ? A 38 ? A 27 ? 1 A U 37 1_555 A A 26 1_555 A C 38 1_555 A G 25 1_555 -0.010 -1.662 3.386 -1.458 4.403 36.618 -3.225 -0.183 3.170 6.973 2.310 36.900 5 AA_U38C39:G26A27_AA A 38 ? A 27 ? A 39 ? A 26 ? 1 A C 38 1_555 A G 25 1_555 A U 39 1_555 A A 21 1_555 0.397 -1.462 3.257 2.093 8.540 40.483 -2.942 -0.347 2.919 12.168 -2.983 41.388 6 AA_C39U40:A22G26_AA A 39 ? A 26 ? A 40 ? A 22 ? 1 A U 39 1_555 A A 21 1_555 A C 40 1_555 A G 20 1_555 0.640 -1.078 3.005 -1.510 5.247 35.297 -2.435 -1.238 2.792 8.590 2.472 35.704 7 AA_U40C41:G21A22_AA A 40 ? A 22 ? A 41 ? A 21 ? 1 A C 40 1_555 A G 20 1_555 A U 41 1_555 A A 19 1_555 -0.564 -1.685 3.217 0.363 12.671 28.997 -5.163 1.095 2.291 23.917 -0.684 31.592 8 AA_C41U42:A20G21_AA A 41 ? A 21 ? A 42 ? A 20 ? 1 A U 41 1_555 A A 19 1_555 A G 42 1_555 A C 18 1_555 -0.475 -1.601 2.853 -3.235 10.387 29.371 -4.541 0.392 2.211 19.656 6.121 31.280 9 AA_U42G43:C19A20_AA A 42 ? A 20 ? A 43 ? A 19 ? 1 A G 42 1_555 A C 18 1_555 A G 43 1_555 A C 17 1_555 0.845 -1.965 3.549 2.419 8.651 32.043 -4.907 -1.065 2.986 15.299 -4.278 33.247 10 AA_G43G44:C18C19_AA A 43 ? A 19 ? A 44 ? A 18 ? 1 A G 43 1_555 A C 17 1_555 A C 44 1_555 A G 15 1_555 0.971 -1.709 3.146 -0.139 1.708 43.704 -2.449 -1.316 3.077 2.293 0.186 43.736 11 AA_G44C45:G16C18_AA A 44 ? A 18 ? A 45 ? A 16 ? 1 A C 44 1_555 A G 15 1_555 A U 45 1_555 A A 14 1_555 0.286 -1.112 3.170 -2.433 7.104 35.767 -2.692 -0.771 2.878 11.412 3.909 36.521 12 AA_C45U46:A15G16_AA A 45 ? A 16 ? A 46 ? A 15 ? 1 A U 45 1_555 A A 14 1_555 A A 46 1_555 A U 13 1_555 -0.306 -1.346 3.208 1.026 7.641 29.621 -3.956 0.768 2.770 14.636 -1.964 30.586 13 AA_U46A47:U14A15_AA A 46 ? A 15 ? A 47 ? A 14 ? 1 A A 46 1_555 A U 13 1_555 A A 47 1_555 A U 12 1_555 -0.177 -1.300 3.209 -1.058 7.305 33.592 -3.275 0.144 2.876 12.453 1.803 34.371 14 AA_A47A48:U13U14_AA A 47 ? A 14 ? A 48 ? A 13 ? 1 A A 47 1_555 A U 12 1_555 A C 48 1_555 A G 11 1_555 0.604 -1.606 3.247 1.278 8.152 29.421 -4.561 -0.910 2.737 15.667 -2.455 30.532 15 AA_A48C49:G12U13_AA A 48 ? A 13 ? A 49 ? A 12 ? 1 A C 48 1_555 A G 11 1_555 A U 49 1_555 A G 10 1_555 -0.366 -1.145 3.332 1.636 5.123 41.337 -2.148 0.686 3.159 7.220 -2.306 41.670 16 AA_C49U50:G11G12_AA A 49 ? A 12 ? A 50 ? A 11 ? 1 A U 49 1_555 A G 10 1_555 A A 50 1_555 A U 9 1_555 -0.401 -1.272 3.079 1.438 13.999 28.233 -4.575 0.969 2.196 26.702 -2.743 31.482 17 AA_U50A51:U10G11_AA A 50 ? A 11 ? A 51 ? A 10 ? 1 A A 50 1_555 A U 9 1_555 A G 51 1_555 A C 8 1_555 0.799 -1.235 3.312 3.088 11.082 33.258 -3.646 -0.877 2.830 18.680 -5.206 35.138 18 AA_A51G52:C9U10_AA A 51 ? A 10 ? A 52 ? A 9 ? 1 A G 51 1_555 A C 8 1_555 A G 52 1_555 A U 7 1_555 -0.718 -1.700 2.660 -5.443 10.824 23.621 -5.792 0.518 1.836 24.484 12.313 26.507 19 AA_G52G53:U8C9_AA A 52 ? A 9 ? A 53 ? A 8 ? 1 A G 52 1_555 A U 7 1_555 A G 53 1_555 A C 6 1_555 0.581 -1.392 3.139 -1.769 5.918 36.063 -2.970 -1.150 2.852 9.474 2.832 36.571 20 AA_G53G54:C7U8_AA A 53 ? A 8 ? A 54 ? A 7 ? 1 A G 53 1_555 A C 6 1_555 A A 54 1_555 A U 5 1_555 0.447 -1.716 3.355 1.558 0.736 33.132 -3.132 -0.516 3.334 1.290 -2.729 33.175 21 AA_G54A55:U6C7_AA A 54 ? A 7 ? A 55 ? A 6 ? 1 A A 54 1_555 A U 5 1_555 A A 55 1_555 A U 3 1_555 1.558 -0.998 3.430 2.440 -0.009 52.310 -1.130 -1.596 3.495 -0.011 -2.766 52.363 22 AA_A55A56:U4U6_AA A 55 ? A 6 ? A 56 ? A 4 ? 1 A A 55 1_555 A U 3 1_555 A C 56 1_555 A G 2 1_555 -0.084 -1.034 2.883 -1.957 9.388 30.813 -3.262 -0.140 2.470 17.154 3.576 32.236 23 AA_A56C57:G3U4_AA A 56 ? A 4 ? A 57 ? A 3 ? 1 A C 56 1_555 A G 2 1_555 A C 57 1_555 A GTP 1 1_555 0.662 -1.600 3.650 -3.710 4.474 38.492 -2.988 -1.479 3.374 6.740 5.588 38.912 24 AA_C57C58:GTP2G3_AA A 57 ? A 3 ? A 58 ? A 2 ? 1 A C 57 1_555 A GTP 1 1_555 B GTP 1 1_555 B C 57 1_555 0.234 -3.657 3.748 1.777 3.876 -12.899 10.340 3.339 4.569 -16.666 7.640 -13.582 25 AB_C58GTP2:C58GTP2_BA A 58 ? A 2 ? B 2 ? B 58 ? 1 B GTP 1 1_555 B C 57 1_555 B G 2 1_555 B C 56 1_555 -1.231 -1.882 3.528 0.069 2.487 28.720 -4.365 2.489 3.354 5.002 -0.139 28.825 26 BB_GTP2G3:C57C58_BB B 2 ? B 58 ? B 3 ? B 57 ? 1 B G 2 1_555 B C 56 1_555 B U 3 1_555 B A 55 1_555 0.001 -1.016 3.004 -1.795 12.120 31.404 -3.465 -0.255 2.452 21.399 3.169 33.653 27 BB_G3U4:A56C57_BB B 3 ? B 57 ? B 4 ? B 56 ? 1 B U 3 1_555 B A 55 1_555 B U 5 1_555 B A 54 1_555 -2.646 -0.558 2.641 -2.954 1.039 53.393 -0.674 2.787 2.763 1.155 3.284 53.478 28 BB_U4U6:A55A56_BB B 4 ? B 56 ? B 6 ? B 55 ? 1 B U 5 1_555 B A 54 1_555 B C 6 1_555 B G 53 1_555 -0.015 -2.052 3.648 -3.978 -1.942 29.421 -3.536 -0.917 3.742 -3.796 7.776 29.745 29 BB_U6C7:G54A55_BB B 6 ? B 55 ? B 7 ? B 54 ? 1 B C 6 1_555 B G 53 1_555 B U 7 1_555 B G 52 1_555 -0.148 -1.345 3.123 2.235 4.607 37.582 -2.617 0.493 2.931 7.111 -3.450 37.917 30 BB_C7U8:G53G54_BB B 7 ? B 54 ? B 8 ? B 53 ? 1 B U 7 1_555 B G 52 1_555 B C 8 1_555 B G 51 1_555 0.142 -1.802 2.811 3.359 12.447 25.024 -5.869 0.289 1.740 26.591 -7.177 28.103 31 BB_U8C9:G52G53_BB B 8 ? B 53 ? B 9 ? B 52 ? 1 B C 8 1_555 B G 51 1_555 B U 9 1_555 B A 50 1_555 -0.629 -1.135 3.296 -3.816 11.037 32.811 -3.526 0.489 2.832 18.813 6.504 34.774 32 BB_C9U10:A51G52_BB B 9 ? B 52 ? B 10 ? B 51 ? 1 B U 9 1_555 B A 50 1_555 B G 10 1_555 B U 49 1_555 0.540 -1.255 2.833 -1.452 12.689 27.908 -4.336 -1.246 2.051 24.736 2.831 30.639 33 BB_U10G11:U50A51_BB B 10 ? B 51 ? B 11 ? B 50 ? 1 B G 10 1_555 B U 49 1_555 B G 11 1_555 B C 48 1_555 -0.389 -1.136 3.390 -1.633 5.009 40.857 -2.167 0.373 3.246 7.139 2.328 41.180 34 BB_G11G12:C49U50_BB B 11 ? B 50 ? B 12 ? B 49 ? 1 B G 11 1_555 B C 48 1_555 B U 12 1_555 B A 47 1_555 -0.508 -1.447 3.187 -1.297 8.023 31.566 -3.873 0.697 2.763 14.450 2.336 32.569 35 BB_G12U13:A48C49_BB B 12 ? B 49 ? B 13 ? B 48 ? 1 B U 12 1_555 B A 47 1_555 B U 13 1_555 B A 46 1_555 0.206 -1.228 3.130 -0.279 4.684 34.107 -2.756 -0.388 2.939 7.939 0.474 34.418 36 BB_U13U14:A47A48_BB B 13 ? B 48 ? B 14 ? B 47 ? 1 B U 13 1_555 B A 46 1_555 B A 14 1_555 B U 45 1_555 0.350 -1.452 3.229 -1.004 7.071 30.948 -3.873 -0.812 2.824 13.035 1.850 31.741 37 BB_U14A15:U46A47_BB B 14 ? B 47 ? B 15 ? B 46 ? 1 B A 14 1_555 B U 45 1_555 B G 15 1_555 B C 44 1_555 -0.164 -1.286 3.174 3.124 7.433 33.418 -3.256 0.730 2.806 12.697 -5.337 34.350 38 BB_A15G16:C45U46_BB B 15 ? B 46 ? B 16 ? B 45 ? 1 B G 15 1_555 B C 44 1_555 B C 17 1_555 B G 43 1_555 -1.327 -1.356 3.076 -2.158 8.466 49.145 -2.173 1.429 2.872 10.086 2.571 49.868 39 BB_G16C18:G44C45_BB B 16 ? B 45 ? B 18 ? B 44 ? 1 B C 17 1_555 B G 43 1_555 B C 18 1_555 B G 42 1_555 -0.316 -2.029 3.132 -0.397 5.228 27.003 -5.423 0.578 2.703 11.064 0.840 27.498 40 BB_C18C19:G43G44_BB B 18 ? B 44 ? B 19 ? B 43 ? 1 B C 18 1_555 B G 42 1_555 B A 19 1_555 B U 41 1_555 0.508 -1.689 2.985 1.189 7.059 28.815 -4.569 -0.777 2.527 13.915 -2.344 29.672 41 BB_C19A20:U42G43_BB B 19 ? B 43 ? B 20 ? B 42 ? 1 B A 19 1_555 B U 41 1_555 B G 20 1_555 B C 40 1_555 0.897 -1.951 3.454 0.374 11.444 27.746 -6.002 -1.661 2.484 22.679 -0.741 29.973 42 BB_A20G21:C41U42_BB B 20 ? B 42 ? B 21 ? B 41 ? 1 B G 20 1_555 B C 40 1_555 B A 21 1_555 B U 39 1_555 -0.872 -1.502 2.984 -0.247 7.461 31.416 -3.845 1.531 2.575 13.540 0.448 32.269 43 BB_G21A22:U40C41_BB B 21 ? B 41 ? B 22 ? B 40 ? 1 B A 21 1_555 B U 39 1_555 B G 25 1_555 B C 38 1_555 -0.466 -1.632 3.199 -2.674 6.136 37.573 -3.229 0.394 2.932 9.435 4.112 38.143 44 BB_A22G26:C39U40_BB B 22 ? B 40 ? B 26 ? B 39 ? 1 B G 25 1_555 B C 38 1_555 B A 26 1_555 B U 37 1_555 0.072 -1.654 3.348 0.556 6.697 39.693 -3.151 -0.043 3.041 9.778 -0.812 40.235 45 BB_G26A27:U38C39_BB B 26 ? B 39 ? B 27 ? B 38 ? 1 B A 26 1_555 B U 37 1_555 B G 27 1_555 B C 36 1_555 0.856 -1.908 3.107 2.502 8.729 26.573 -5.730 -1.251 2.438 18.323 -5.252 28.055 46 BB_A27G28:C37U38_BB B 27 ? B 38 ? B 28 ? B 37 ? 1 B G 27 1_555 B C 36 1_555 B C 28 1_555 B G 35 1_555 -0.490 -1.737 3.088 -0.777 5.681 37.355 -3.347 0.667 2.812 8.805 1.204 37.777 47 BB_G28C29:G36C37_BB B 28 ? B 37 ? B 29 ? B 36 ? 1 B C 28 1_555 B G 35 1_555 B C 29 1_555 B A 34 1_555 0.061 -1.179 3.069 4.545 4.861 40.388 -2.177 0.371 2.904 6.984 -6.529 40.910 48 BB_C29C30:A35G36_BB B 29 ? B 36 ? B 30 ? B 35 ? 1 B C 29 1_555 B A 34 1_555 B G 30 1_555 B A 33 1_555 -1.639 -1.199 2.577 -2.680 6.860 40.142 -2.307 2.123 2.448 9.893 3.865 40.785 49 BB_C30G31:A34A35_BB B 30 ? B 35 ? B 31 ? B 34 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 9DE7 _pdbx_initial_refinement_model.details 'another model generated within this study by SAD' # _atom_sites.entry_id 9DE6 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.016326 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000980 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023820 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014610 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P # loop_