HEADER HYDROLASE/HYDROLASE INHIBITOR 29-AUG-24 9DEL TITLE USP7 IN COMPLEX WITH MACROCYCLE MC03 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DEUBIQUITINATING ENZYME 7,HERPESVIRUS-ASSOCIATED UBIQUITIN- COMPND 5 SPECIFIC PROTEASE,UBIQUITIN THIOESTERASE 7,UBIQUITIN-SPECIFIC- COMPND 6 PROCESSING PROTEASE 7; COMPND 7 EC: 3.4.19.12; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: MACROCYCLE PEPTIDE MC03; COMPND 11 CHAIN: D, C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP7, HAUSP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS USP7, HAUSP, MACROCYCLE, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.ULTSCH,C.A.TENORIO,E.C.DUEBER,S.F.HARRIS REVDAT 2 16-APR-25 9DEL 1 JRNL REVDAT 1 05-MAR-25 9DEL 0 JRNL AUTH R.MIRANDA,F.ANSON,S.T.SMITH,M.ULTSCH,C.A.TENORIO,L.ROUGE, JRNL AUTH 2 B.FARRELL,E.ADALIGIL,J.K.HOLDEN,S.F.HARRIS,E.C.DUEBER JRNL TITL DISCOVERY AND CHARACTERIZATION OF POTENT MACROCYCLE JRNL TITL 2 INHIBITORS OF UBIQUITIN-SPECIFIC PROTEASE-7. JRNL REF STRUCTURE V. 33 705 2025 JRNL REFN ISSN 0969-2126 JRNL PMID 39983720 JRNL DOI 10.1016/J.STR.2025.01.021 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 75.6 REMARK 3 NUMBER OF REFLECTIONS : 20664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8100 - 5.0000 0.77 2574 115 0.1823 0.2861 REMARK 3 2 5.0000 - 3.9700 0.82 2674 143 0.1736 0.2081 REMARK 3 3 3.9700 - 3.4700 0.75 2459 106 0.2182 0.2369 REMARK 3 4 3.4700 - 3.1500 0.84 2727 118 0.2781 0.3126 REMARK 3 5 3.1500 - 2.9200 0.85 2740 156 0.2864 0.3323 REMARK 3 6 2.9200 - 2.7500 0.86 2747 192 0.3250 0.3882 REMARK 3 7 2.7500 - 2.6100 0.65 2085 121 0.3248 0.3645 REMARK 3 8 2.6100 - 2.5000 0.51 1604 103 0.3277 0.3687 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5673 REMARK 3 ANGLE : 0.452 7675 REMARK 3 CHIRALITY : 0.038 820 REMARK 3 PLANARITY : 0.003 1004 REMARK 3 DIHEDRAL : 13.910 2087 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 212 THROUGH 552) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6707 13.7414 0.3696 REMARK 3 T TENSOR REMARK 3 T11: 0.8398 T22: 0.7639 REMARK 3 T33: 0.5929 T12: -0.0121 REMARK 3 T13: -0.0190 T23: 0.0505 REMARK 3 L TENSOR REMARK 3 L11: 5.0640 L22: 3.5516 REMARK 3 L33: 1.8260 L12: -0.2647 REMARK 3 L13: -0.0520 L23: -0.6987 REMARK 3 S TENSOR REMARK 3 S11: 0.1030 S12: -0.2878 S13: 0.0256 REMARK 3 S21: -0.3120 S22: -0.1379 S23: 0.1105 REMARK 3 S31: 0.1507 S32: 0.1610 S33: 0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 211 THROUGH 553) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3658 12.0348 38.4169 REMARK 3 T TENSOR REMARK 3 T11: 0.6709 T22: 0.6261 REMARK 3 T33: 0.5923 T12: -0.0073 REMARK 3 T13: -0.0162 T23: 0.0998 REMARK 3 L TENSOR REMARK 3 L11: 3.7241 L22: 4.7189 REMARK 3 L33: 1.5662 L12: 1.4126 REMARK 3 L13: 0.2642 L23: 0.9135 REMARK 3 S TENSOR REMARK 3 S11: 0.1155 S12: -0.0749 S13: -0.0737 REMARK 3 S21: 0.0120 S22: -0.0627 S23: -0.1388 REMARK 3 S31: -0.0023 S32: -0.1867 S33: 0.0049 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 0 THROUGH 14) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3962 12.2484 50.8434 REMARK 3 T TENSOR REMARK 3 T11: 0.9769 T22: 0.9052 REMARK 3 T33: 0.8975 T12: -0.1649 REMARK 3 T13: -0.1389 T23: 0.1180 REMARK 3 L TENSOR REMARK 3 L11: 0.0495 L22: 0.0396 REMARK 3 L33: 0.0392 L12: 0.0282 REMARK 3 L13: 0.0352 L23: 0.0384 REMARK 3 S TENSOR REMARK 3 S11: 0.2293 S12: -0.1828 S13: -0.3657 REMARK 3 S21: 0.8383 S22: -0.1248 S23: -0.8688 REMARK 3 S31: 0.7564 S32: 0.6047 S33: 0.0003 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 0 THROUGH 14) REMARK 3 ORIGIN FOR THE GROUP (A): -40.0581 12.8338 -11.2336 REMARK 3 T TENSOR REMARK 3 T11: 1.1178 T22: 1.0945 REMARK 3 T33: 1.0736 T12: 0.0936 REMARK 3 T13: -0.1791 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.0739 L22: 0.0354 REMARK 3 L33: 0.0781 L12: -0.0335 REMARK 3 L13: 0.0448 L23: -0.0533 REMARK 3 S TENSOR REMARK 3 S11: 0.0187 S12: 0.4847 S13: -0.4009 REMARK 3 S21: -0.8920 S22: 0.3274 S23: 1.0784 REMARK 3 S31: 0.6049 S32: -0.9512 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9DEL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1000287907. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97911 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20952 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.397 REMARK 200 RESOLUTION RANGE LOW (A) : 74.871 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 75.6 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.02800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 45.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 %W/V PEG 1500, 0.1 M MMT PH 7, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.70850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 187 REMARK 465 GLY A 188 REMARK 465 SER A 189 REMARK 465 SER A 190 REMARK 465 HIS A 191 REMARK 465 HIS A 192 REMARK 465 HIS A 193 REMARK 465 HIS A 194 REMARK 465 HIS A 195 REMARK 465 HIS A 196 REMARK 465 SER A 197 REMARK 465 SER A 198 REMARK 465 GLY A 199 REMARK 465 LEU A 200 REMARK 465 VAL A 201 REMARK 465 PRO A 202 REMARK 465 ARG A 203 REMARK 465 GLY A 204 REMARK 465 SER A 205 REMARK 465 HIS A 206 REMARK 465 MET A 207 REMARK 465 LYS A 208 REMARK 465 LYS A 209 REMARK 465 HIS A 210 REMARK 465 THR A 211 REMARK 465 HIS A 501 REMARK 465 ASP A 502 REMARK 465 ASP A 503 REMARK 465 ASP A 504 REMARK 465 LEU A 505 REMARK 465 SER A 506 REMARK 465 VAL A 507 REMARK 465 ARG A 508 REMARK 465 HIS A 509 REMARK 465 ALA A 552 REMARK 465 GLN A 553 REMARK 465 LYS A 554 REMARK 465 MET B 187 REMARK 465 GLY B 188 REMARK 465 SER B 189 REMARK 465 SER B 190 REMARK 465 HIS B 191 REMARK 465 HIS B 192 REMARK 465 HIS B 193 REMARK 465 HIS B 194 REMARK 465 HIS B 195 REMARK 465 HIS B 196 REMARK 465 SER B 197 REMARK 465 SER B 198 REMARK 465 GLY B 199 REMARK 465 LEU B 200 REMARK 465 VAL B 201 REMARK 465 PRO B 202 REMARK 465 ARG B 203 REMARK 465 GLY B 204 REMARK 465 SER B 205 REMARK 465 HIS B 206 REMARK 465 MET B 207 REMARK 465 LYS B 208 REMARK 465 LYS B 209 REMARK 465 HIS B 210 REMARK 465 ASP B 502 REMARK 465 ASP B 503 REMARK 465 ASP B 504 REMARK 465 LEU B 505 REMARK 465 SER B 506 REMARK 465 VAL B 507 REMARK 465 ARG B 508 REMARK 465 HIS B 509 REMARK 465 GLN B 553 REMARK 465 LYS B 554 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 LYS A 335 CG CD CE NZ REMARK 470 ARG A 344 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 394 CG CD CE NZ REMARK 470 GLN A 414 CG CD OE1 NE2 REMARK 470 GLN A 417 CG CD OE1 NE2 REMARK 470 LYS A 439 CG CD CE NZ REMARK 470 LYS A 443 CG CD CE NZ REMARK 470 HIS A 534 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 538 CG CD OE1 NE2 REMARK 470 LYS A 548 CG CD CE NZ REMARK 470 LYS B 327 CG CD CE NZ REMARK 470 LYS B 335 CG CD CE NZ REMARK 470 ARG B 344 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 378 CG CD CE NZ REMARK 470 GLN B 414 CG CD OE1 NE2 REMARK 470 GLN B 417 CG CD OE1 NE2 REMARK 470 LYS B 439 CG CD CE NZ REMARK 470 LYS B 443 CG CD CE NZ REMARK 470 GLN B 538 CG CD OE1 NE2 REMARK 470 GLN B 545 CG CD OE1 NE2 REMARK 470 GLU B 546 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ACE D 0 SG CYS D 14 2.12 REMARK 500 O SER A 353 OG SER A 363 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 219 -132.94 53.93 REMARK 500 CYS A 223 -124.34 59.41 REMARK 500 LYS A 443 -4.05 75.38 REMARK 500 ASP A 444 70.81 -151.33 REMARK 500 ASP A 482 -110.52 48.20 REMARK 500 LEU A 528 50.92 -93.50 REMARK 500 THR B 247 30.14 -93.52 REMARK 500 TRP B 285 54.01 -91.75 REMARK 500 LYS B 443 -2.90 72.77 REMARK 500 ASP B 444 75.45 -151.96 REMARK 500 ASP B 482 -114.59 49.17 REMARK 500 ILE B 494 -65.08 -94.77 REMARK 500 LEU B 528 34.59 -97.13 REMARK 500 ARG D 4 -96.79 53.97 REMARK 500 ARG C 4 -104.06 51.61 REMARK 500 ASN C 11 -12.61 80.26 REMARK 500 REMARK 500 REMARK: NULL DBREF 9DEL A 208 554 UNP Q93009 UBP7_HUMAN 192 538 DBREF 9DEL B 208 554 UNP Q93009 UBP7_HUMAN 192 538 DBREF 9DEL D 0 14 PDB 9DEL 9DEL 0 14 DBREF 9DEL C 0 14 PDB 9DEL 9DEL 0 14 SEQADV 9DEL MET A 187 UNP Q93009 INITIATING METHIONINE SEQADV 9DEL GLY A 188 UNP Q93009 EXPRESSION TAG SEQADV 9DEL SER A 189 UNP Q93009 EXPRESSION TAG SEQADV 9DEL SER A 190 UNP Q93009 EXPRESSION TAG SEQADV 9DEL HIS A 191 UNP Q93009 EXPRESSION TAG SEQADV 9DEL HIS A 192 UNP Q93009 EXPRESSION TAG SEQADV 9DEL HIS A 193 UNP Q93009 EXPRESSION TAG SEQADV 9DEL HIS A 194 UNP Q93009 EXPRESSION TAG SEQADV 9DEL HIS A 195 UNP Q93009 EXPRESSION TAG SEQADV 9DEL HIS A 196 UNP Q93009 EXPRESSION TAG SEQADV 9DEL SER A 197 UNP Q93009 EXPRESSION TAG SEQADV 9DEL SER A 198 UNP Q93009 EXPRESSION TAG SEQADV 9DEL GLY A 199 UNP Q93009 EXPRESSION TAG SEQADV 9DEL LEU A 200 UNP Q93009 EXPRESSION TAG SEQADV 9DEL VAL A 201 UNP Q93009 EXPRESSION TAG SEQADV 9DEL PRO A 202 UNP Q93009 EXPRESSION TAG SEQADV 9DEL ARG A 203 UNP Q93009 EXPRESSION TAG SEQADV 9DEL GLY A 204 UNP Q93009 EXPRESSION TAG SEQADV 9DEL SER A 205 UNP Q93009 EXPRESSION TAG SEQADV 9DEL HIS A 206 UNP Q93009 EXPRESSION TAG SEQADV 9DEL MET A 207 UNP Q93009 EXPRESSION TAG SEQADV 9DEL MET B 187 UNP Q93009 INITIATING METHIONINE SEQADV 9DEL GLY B 188 UNP Q93009 EXPRESSION TAG SEQADV 9DEL SER B 189 UNP Q93009 EXPRESSION TAG SEQADV 9DEL SER B 190 UNP Q93009 EXPRESSION TAG SEQADV 9DEL HIS B 191 UNP Q93009 EXPRESSION TAG SEQADV 9DEL HIS B 192 UNP Q93009 EXPRESSION TAG SEQADV 9DEL HIS B 193 UNP Q93009 EXPRESSION TAG SEQADV 9DEL HIS B 194 UNP Q93009 EXPRESSION TAG SEQADV 9DEL HIS B 195 UNP Q93009 EXPRESSION TAG SEQADV 9DEL HIS B 196 UNP Q93009 EXPRESSION TAG SEQADV 9DEL SER B 197 UNP Q93009 EXPRESSION TAG SEQADV 9DEL SER B 198 UNP Q93009 EXPRESSION TAG SEQADV 9DEL GLY B 199 UNP Q93009 EXPRESSION TAG SEQADV 9DEL LEU B 200 UNP Q93009 EXPRESSION TAG SEQADV 9DEL VAL B 201 UNP Q93009 EXPRESSION TAG SEQADV 9DEL PRO B 202 UNP Q93009 EXPRESSION TAG SEQADV 9DEL ARG B 203 UNP Q93009 EXPRESSION TAG SEQADV 9DEL GLY B 204 UNP Q93009 EXPRESSION TAG SEQADV 9DEL SER B 205 UNP Q93009 EXPRESSION TAG SEQADV 9DEL HIS B 206 UNP Q93009 EXPRESSION TAG SEQADV 9DEL MET B 207 UNP Q93009 EXPRESSION TAG SEQRES 1 A 368 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 368 LEU VAL PRO ARG GLY SER HIS MET LYS LYS HIS THR GLY SEQRES 3 A 368 TYR VAL GLY LEU LYS ASN GLN GLY ALA THR CYS TYR MET SEQRES 4 A 368 ASN SER LEU LEU GLN THR LEU PHE PHE THR ASN GLN LEU SEQRES 5 A 368 ARG LYS ALA VAL TYR MET MET PRO THR GLU GLY ASP ASP SEQRES 6 A 368 SER SER LYS SER VAL PRO LEU ALA LEU GLN ARG VAL PHE SEQRES 7 A 368 TYR GLU LEU GLN HIS SER ASP LYS PRO VAL GLY THR LYS SEQRES 8 A 368 LYS LEU THR LYS SER PHE GLY TRP GLU THR LEU ASP SER SEQRES 9 A 368 PHE MET GLN HIS ASP VAL GLN GLU LEU CYS ARG VAL LEU SEQRES 10 A 368 LEU ASP ASN VAL GLU ASN LYS MET LYS GLY THR CYS VAL SEQRES 11 A 368 GLU GLY THR ILE PRO LYS LEU PHE ARG GLY LYS MET VAL SEQRES 12 A 368 SER TYR ILE GLN CYS LYS GLU VAL ASP TYR ARG SER ASP SEQRES 13 A 368 ARG ARG GLU ASP TYR TYR ASP ILE GLN LEU SER ILE LYS SEQRES 14 A 368 GLY LYS LYS ASN ILE PHE GLU SER PHE VAL ASP TYR VAL SEQRES 15 A 368 ALA VAL GLU GLN LEU ASP GLY ASP ASN LYS TYR ASP ALA SEQRES 16 A 368 GLY GLU HIS GLY LEU GLN GLU ALA GLU LYS GLY VAL LYS SEQRES 17 A 368 PHE LEU THR LEU PRO PRO VAL LEU HIS LEU GLN LEU MET SEQRES 18 A 368 ARG PHE MET TYR ASP PRO GLN THR ASP GLN ASN ILE LYS SEQRES 19 A 368 ILE ASN ASP ARG PHE GLU PHE PRO GLU GLN LEU PRO LEU SEQRES 20 A 368 ASP GLU PHE LEU GLN LYS THR ASP PRO LYS ASP PRO ALA SEQRES 21 A 368 ASN TYR ILE LEU HIS ALA VAL LEU VAL HIS SER GLY ASP SEQRES 22 A 368 ASN HIS GLY GLY HIS TYR VAL VAL TYR LEU ASN PRO LYS SEQRES 23 A 368 GLY ASP GLY LYS TRP CYS LYS PHE ASP ASP ASP VAL VAL SEQRES 24 A 368 SER ARG CYS THR LYS GLU GLU ALA ILE GLU HIS ASN TYR SEQRES 25 A 368 GLY GLY HIS ASP ASP ASP LEU SER VAL ARG HIS CYS THR SEQRES 26 A 368 ASN ALA TYR MET LEU VAL TYR ILE ARG GLU SER LYS LEU SEQRES 27 A 368 SER GLU VAL LEU GLN ALA VAL THR ASP HIS ASP ILE PRO SEQRES 28 A 368 GLN GLN LEU VAL GLU ARG LEU GLN GLU GLU LYS ARG ILE SEQRES 29 A 368 GLU ALA GLN LYS SEQRES 1 B 368 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 368 LEU VAL PRO ARG GLY SER HIS MET LYS LYS HIS THR GLY SEQRES 3 B 368 TYR VAL GLY LEU LYS ASN GLN GLY ALA THR CYS TYR MET SEQRES 4 B 368 ASN SER LEU LEU GLN THR LEU PHE PHE THR ASN GLN LEU SEQRES 5 B 368 ARG LYS ALA VAL TYR MET MET PRO THR GLU GLY ASP ASP SEQRES 6 B 368 SER SER LYS SER VAL PRO LEU ALA LEU GLN ARG VAL PHE SEQRES 7 B 368 TYR GLU LEU GLN HIS SER ASP LYS PRO VAL GLY THR LYS SEQRES 8 B 368 LYS LEU THR LYS SER PHE GLY TRP GLU THR LEU ASP SER SEQRES 9 B 368 PHE MET GLN HIS ASP VAL GLN GLU LEU CYS ARG VAL LEU SEQRES 10 B 368 LEU ASP ASN VAL GLU ASN LYS MET LYS GLY THR CYS VAL SEQRES 11 B 368 GLU GLY THR ILE PRO LYS LEU PHE ARG GLY LYS MET VAL SEQRES 12 B 368 SER TYR ILE GLN CYS LYS GLU VAL ASP TYR ARG SER ASP SEQRES 13 B 368 ARG ARG GLU ASP TYR TYR ASP ILE GLN LEU SER ILE LYS SEQRES 14 B 368 GLY LYS LYS ASN ILE PHE GLU SER PHE VAL ASP TYR VAL SEQRES 15 B 368 ALA VAL GLU GLN LEU ASP GLY ASP ASN LYS TYR ASP ALA SEQRES 16 B 368 GLY GLU HIS GLY LEU GLN GLU ALA GLU LYS GLY VAL LYS SEQRES 17 B 368 PHE LEU THR LEU PRO PRO VAL LEU HIS LEU GLN LEU MET SEQRES 18 B 368 ARG PHE MET TYR ASP PRO GLN THR ASP GLN ASN ILE LYS SEQRES 19 B 368 ILE ASN ASP ARG PHE GLU PHE PRO GLU GLN LEU PRO LEU SEQRES 20 B 368 ASP GLU PHE LEU GLN LYS THR ASP PRO LYS ASP PRO ALA SEQRES 21 B 368 ASN TYR ILE LEU HIS ALA VAL LEU VAL HIS SER GLY ASP SEQRES 22 B 368 ASN HIS GLY GLY HIS TYR VAL VAL TYR LEU ASN PRO LYS SEQRES 23 B 368 GLY ASP GLY LYS TRP CYS LYS PHE ASP ASP ASP VAL VAL SEQRES 24 B 368 SER ARG CYS THR LYS GLU GLU ALA ILE GLU HIS ASN TYR SEQRES 25 B 368 GLY GLY HIS ASP ASP ASP LEU SER VAL ARG HIS CYS THR SEQRES 26 B 368 ASN ALA TYR MET LEU VAL TYR ILE ARG GLU SER LYS LEU SEQRES 27 B 368 SER GLU VAL LEU GLN ALA VAL THR ASP HIS ASP ILE PRO SEQRES 28 B 368 GLN GLN LEU VAL GLU ARG LEU GLN GLU GLU LYS ARG ILE SEQRES 29 B 368 GLU ALA GLN LYS SEQRES 1 D 15 ACE PHE TYR TYR ARG GLY GLY TRP TYR SER VAL ASN GLY SEQRES 2 D 15 TYR CYS SEQRES 1 C 15 ACE PHE TYR TYR ARG GLY GLY TRP TYR SER VAL ASN GLY SEQRES 2 C 15 TYR CYS HET ACE D 0 3 HET ACE C 0 3 HETNAM ACE ACETYL GROUP FORMUL 3 ACE 2(C2 H4 O) FORMUL 5 HOH *14(H2 O) HELIX 1 AA1 TYR A 224 PHE A 234 1 11 HELIX 2 AA2 THR A 235 MET A 244 1 10 HELIX 3 AA3 PRO A 246 ASP A 250 5 5 HELIX 4 AA4 SER A 255 SER A 270 1 16 HELIX 5 AA5 THR A 276 PHE A 283 1 8 HELIX 6 AA6 ASP A 295 LYS A 312 1 18 HELIX 7 AA7 GLY A 318 ARG A 325 1 8 HELIX 8 AA8 ASN A 359 VAL A 368 1 10 HELIX 9 AA9 ASP A 374 LYS A 378 5 5 HELIX 10 AB1 GLY A 382 HIS A 384 5 3 HELIX 11 AB2 THR A 489 ILE A 494 1 6 HELIX 12 AB3 GLU A 495 TYR A 498 5 4 HELIX 13 AB4 LYS A 523 LEU A 528 1 6 HELIX 14 AB5 THR A 532 ILE A 536 5 5 HELIX 15 AB6 PRO A 537 GLU A 551 1 15 HELIX 16 AB7 TYR B 224 PHE B 234 1 11 HELIX 17 AB8 THR B 235 MET B 244 1 10 HELIX 18 AB9 SER B 255 SER B 270 1 16 HELIX 19 AC1 THR B 276 PHE B 283 1 8 HELIX 20 AC2 LEU B 288 HIS B 294 1 7 HELIX 21 AC3 ASP B 295 LYS B 312 1 18 HELIX 22 AC4 GLY B 318 ARG B 325 1 8 HELIX 23 AC5 ASN B 359 ALA B 369 1 11 HELIX 24 AC6 GLY B 382 HIS B 384 5 3 HELIX 25 AC7 ASP B 434 LEU B 437 5 4 HELIX 26 AC8 THR B 489 ILE B 494 1 6 HELIX 27 AC9 GLU B 495 TYR B 498 5 4 HELIX 28 AD1 LYS B 523 LEU B 528 1 6 HELIX 29 AD2 PRO B 537 GLU B 551 1 15 SHEET 1 AA1 4 ARG A 340 TYR A 347 0 SHEET 2 AA1 4 GLY A 326 CYS A 334 -1 N SER A 330 O ARG A 343 SHEET 3 AA1 4 ALA A 389 PHE A 395 -1 O LYS A 394 N VAL A 329 SHEET 4 AA1 4 GLU A 371 LEU A 373 -1 N GLU A 371 O LYS A 391 SHEET 1 AA2 5 ILE A 350 LEU A 352 0 SHEET 2 AA2 5 VAL A 401 LEU A 406 1 O GLN A 405 N LEU A 352 SHEET 3 AA2 5 ASN A 512 ARG A 520 -1 O TYR A 518 N LEU A 402 SHEET 4 AA2 5 ASN A 447 HIS A 456 -1 N HIS A 451 O VAL A 517 SHEET 5 AA2 5 GLN A 430 PRO A 432 -1 N LEU A 431 O TYR A 448 SHEET 1 AA3 7 ILE A 350 LEU A 352 0 SHEET 2 AA3 7 VAL A 401 LEU A 406 1 O GLN A 405 N LEU A 352 SHEET 3 AA3 7 ASN A 512 ARG A 520 -1 O TYR A 518 N LEU A 402 SHEET 4 AA3 7 ASN A 447 HIS A 456 -1 N HIS A 451 O VAL A 517 SHEET 5 AA3 7 TYR A 465 LEU A 469 -1 O VAL A 466 N VAL A 455 SHEET 6 AA3 7 CYS A 478 ASP A 481 -1 O CYS A 478 N LEU A 469 SHEET 7 AA3 7 VAL A 484 ARG A 487 -1 O SER A 486 N LYS A 479 SHEET 1 AA4 2 TYR A 379 ASP A 380 0 SHEET 2 AA4 2 LEU A 386 GLN A 387 -1 O GLN A 387 N TYR A 379 SHEET 1 AA5 4 GLN A 417 LYS A 420 0 SHEET 2 AA5 4 PHE A 409 ASP A 412 -1 N MET A 410 O ILE A 419 SHEET 3 AA5 4 GLY C 6 SER C 9 -1 O TRP C 7 N TYR A 411 SHEET 4 AA5 4 PHE C 1 TYR C 3 -1 N PHE C 1 O TYR C 8 SHEET 1 AA6 4 ARG B 340 TYR B 347 0 SHEET 2 AA6 4 GLY B 326 CYS B 334 -1 N SER B 330 O ARG B 343 SHEET 3 AA6 4 ALA B 389 PHE B 395 -1 O LYS B 394 N VAL B 329 SHEET 4 AA6 4 GLU B 371 LEU B 373 -1 N GLU B 371 O LYS B 391 SHEET 1 AA7 5 ILE B 350 SER B 353 0 SHEET 2 AA7 5 VAL B 401 MET B 407 1 O GLN B 405 N LEU B 352 SHEET 3 AA7 5 THR B 511 ARG B 520 -1 O TYR B 518 N LEU B 402 SHEET 4 AA7 5 ASN B 447 SER B 457 -1 N HIS B 451 O VAL B 517 SHEET 5 AA7 5 GLN B 430 PRO B 432 -1 N LEU B 431 O TYR B 448 SHEET 1 AA8 7 ILE B 350 SER B 353 0 SHEET 2 AA8 7 VAL B 401 MET B 407 1 O GLN B 405 N LEU B 352 SHEET 3 AA8 7 THR B 511 ARG B 520 -1 O TYR B 518 N LEU B 402 SHEET 4 AA8 7 ASN B 447 SER B 457 -1 N HIS B 451 O VAL B 517 SHEET 5 AA8 7 HIS B 464 LEU B 469 -1 O VAL B 466 N VAL B 455 SHEET 6 AA8 7 CYS B 478 ASP B 481 -1 O CYS B 478 N LEU B 469 SHEET 7 AA8 7 VAL B 484 ARG B 487 -1 O SER B 486 N LYS B 479 SHEET 1 AA9 2 TYR B 379 ASP B 380 0 SHEET 2 AA9 2 LEU B 386 GLN B 387 -1 O GLN B 387 N TYR B 379 SHEET 1 AB1 4 GLN B 417 LYS B 420 0 SHEET 2 AB1 4 PHE B 409 ASP B 412 -1 N MET B 410 O ILE B 419 SHEET 3 AB1 4 GLY D 6 SER D 9 -1 O SER D 9 N PHE B 409 SHEET 4 AB1 4 PHE D 1 TYR D 3 -1 N PHE D 1 O TYR D 8 LINK C ACE D 0 N PHE D 1 1555 1555 1.33 LINK CH3 ACE D 0 SG CYS D 14 1555 1555 1.38 LINK C ACE C 0 N PHE C 1 1555 1555 1.33 LINK CH3 ACE C 0 SG CYS C 14 1555 1555 1.35 CRYST1 74.913 69.417 76.408 90.00 91.93 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013349 0.000000 0.000450 0.00000 SCALE2 0.000000 0.014406 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013095 0.00000 CONECT 5300 5301 5302 5303 CONECT 5301 5300 CONECT 5302 5300 5425 CONECT 5303 5300 CONECT 5425 5302 CONECT 5427 5428 5429 5430 CONECT 5428 5427 CONECT 5429 5427 5552 CONECT 5430 5427 CONECT 5552 5429 MASTER 414 0 2 29 44 0 0 6 5563 4 10 62 END