HEADER METAL BINDING PROTEIN 29-AUG-24 9DEU TITLE CRYSTAL STRUCTURE OF EPOXYQUEUOSINE REDUCTASE QUEH IN COMPLEX WITH TITLE 2 QUEUOSINE CAVEAT 9DEU RESIDUES ILE A 33 AND GLN A 34 THAT ARE NEXT TO EACH OTHER CAVEAT 2 9DEU IN THE SAMPLE SEQUENCE ARE NOT PROPERLY LINKED: DISTANCE CAVEAT 3 9DEU BETWEEN C AND N IS 1.19. RESIDUES LEU A 95 AND GLU A 96 CAVEAT 4 9DEU THAT ARE NEXT TO EACH OTHER IN THE SAMPLE SEQUENCE ARE NOT CAVEAT 5 9DEU PROPERLY LINKED: DISTANCE BETWEEN C AND N IS 1.19. RESIDUES CAVEAT 6 9DEU ALA A 116 AND SER A 117 THAT ARE NEXT TO EACH OTHER IN THE CAVEAT 7 9DEU SAMPLE SEQUENCE ARE NOT PROPERLY LINKED: DISTANCE BETWEEN C CAVEAT 8 9DEU AND N IS 0.87. ESIDUES GLY A 154 AND VAL A 155 THAT ARE CAVEAT 9 9DEU NEXT TO EACH OTHER IN THE SAMPLE SEQUENCE ARE NOT PROPERLY CAVEAT 10 9DEU LINKED: DISTANCE BETWEEN C AND N IS 1.20. RESIDUES GLN A CAVEAT 11 9DEU 166 AND ASN A 167 THAT ARE NEXT TO EACH OTHER IN THE SAMPLE CAVEAT 12 9DEU SEQUENCE ARE NOT PROPERLY LINKED: DISTANCE BETWEEN C AND N CAVEAT 13 9DEU IS 1.12. RESIDUES ASN A 167 AND TYR A 168 THAT ARE NEXT TO CAVEAT 14 9DEU EACH OTHER IN THE SAMPLE SEQUENCE ARE NOT PROPERLY LINKED: CAVEAT 15 9DEU DISTANCE BETWEEN C AND N IS 1.15 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPOXYQUEUOSINE REDUCTASE QUEH; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: QUEUOSINE BIOSYNTHESIS PROTEIN QUEH; COMPND 5 EC: 1.17.99.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA MSB8; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 GENE: QUEH, TM_0731; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS QUEUOSINE BIOSYNTHESIS, EPOXYQUEUOSINE REDUCTASE, METALLOENZYME, KEYWDS 2 METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.HU,S.D.BRUNER REVDAT 1 18-DEC-24 9DEU 0 JRNL AUTH Y.HU,M.JAROCH,G.SUN,P.C.DEDON,V.DE CRECY-LAGARD,S.D.BRUNER JRNL TITL MECHANISM OF CATALYSIS AND SUBSTRATE BINDING OF JRNL TITL 2 EPOXYQUEUOSINE REDUCTASE IN THE BIOSYNTHETIC PATHWAY TO JRNL TITL 3 QUEUOSINE-MODIFIED TRNA. JRNL REF BIOCHEMISTRY 2024 JRNL REFN ISSN 0006-2960 JRNL PMID 39644232 JRNL DOI 10.1021/ACS.BIOCHEM.4C00524 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 22742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.330 REMARK 3 FREE R VALUE TEST SET COUNT : 1212 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9000 - 3.5400 1.00 2606 120 0.2146 0.2068 REMARK 3 2 3.5400 - 2.8100 1.00 2456 153 0.2144 0.2456 REMARK 3 3 2.8100 - 2.4600 1.00 2448 136 0.2299 0.2101 REMARK 3 4 2.4600 - 2.2300 1.00 2420 157 0.2197 0.2560 REMARK 3 5 2.2300 - 2.0700 1.00 2450 122 0.2182 0.2302 REMARK 3 6 2.0700 - 1.9500 1.00 2417 132 0.2200 0.2453 REMARK 3 7 1.9500 - 1.8500 1.00 2406 135 0.2322 0.2680 REMARK 3 8 1.8500 - 1.7700 0.96 2316 150 0.2352 0.2347 REMARK 3 9 1.7700 - 1.7000 0.83 2011 107 0.2673 0.3185 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.898 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.024 1398 REMARK 3 ANGLE : 1.422 1891 REMARK 3 CHIRALITY : 0.507 202 REMARK 3 PLANARITY : 0.045 234 REMARK 3 DIHEDRAL : 15.204 517 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9DEU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1000287396. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22745 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 36.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS, PH 5.5, 200 MM REMARK 280 LITHIUM SULFATE MONOHYDRATE, 25% PEG3350, 10 MM CACL2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.89600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.89600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.82350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.59700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.82350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.59700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.89600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.82350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.59700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.89600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.82350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.59700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 356 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 357 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 75 REMARK 465 ASP A 76 REMARK 465 TYR A 77 REMARK 465 LYS A 78 REMARK 465 ASP A 79 REMARK 465 LEU A 80 REMARK 465 GLY A 81 REMARK 465 GLU A 82 REMARK 465 GLY A 83 REMARK 465 SER A 84 REMARK 465 PHE A 173 REMARK 465 SER A 174 REMARK 465 LEU A 175 REMARK 465 LEU A 176 REMARK 465 GLU A 177 REMARK 465 ARG A 178 REMARK 465 ARG A 179 REMARK 465 GLU A 180 REMARK 465 LYS A 181 REMARK 465 HIS A 182 REMARK 465 ALA A 183 REMARK 465 GLU A 184 REMARK 465 ILE A 185 REMARK 465 SER A 186 REMARK 465 ARG A 187 REMARK 465 LYS A 188 REMARK 465 ARG A 189 REMARK 465 GLY A 190 REMARK 465 HIS A 191 REMARK 465 MET A 192 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 116 N SER A 117 1.80 REMARK 500 O GLN A 166 N10 56B A 201 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A 33 C GLN A 34 N -0.143 REMARK 500 LEU A 95 C GLU A 96 N -0.148 REMARK 500 ALA A 116 C SER A 117 N -0.470 REMARK 500 GLY A 154 C VAL A 155 N -0.139 REMARK 500 GLN A 166 C ASN A 167 N -0.212 REMARK 500 ASN A 167 C TYR A 168 N -0.182 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 33 O - C - N ANGL. DEV. = -13.2 DEGREES REMARK 500 GLN A 166 CA - C - N ANGL. DEV. = -14.2 DEGREES REMARK 500 GLN A 166 O - C - N ANGL. DEV. = 11.9 DEGREES REMARK 500 ASN A 167 O - C - N ANGL. DEV. = -10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 30 66.45 -154.15 REMARK 500 ASN A 144 62.72 -69.68 REMARK 500 ALA A 150 -35.54 -39.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 146 0.28 SIDE CHAIN REMARK 500 ARG A 165 0.29 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 56B A 201 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 9 SG REMARK 620 2 CYS A 10 SG 126.1 REMARK 620 3 ASP A 13 OD2 104.8 94.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 202 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 87 SG REMARK 620 2 SF4 A 202 S1 119.0 REMARK 620 3 SF4 A 202 S3 114.0 103.6 REMARK 620 4 SF4 A 202 S4 110.9 103.8 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 202 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 90 SG REMARK 620 2 SF4 A 202 S1 114.8 REMARK 620 3 SF4 A 202 S2 111.8 103.9 REMARK 620 4 SF4 A 202 S4 117.1 103.8 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 202 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 169 SG REMARK 620 2 SF4 A 202 S2 120.1 REMARK 620 3 SF4 A 202 S3 103.2 104.1 REMARK 620 4 SF4 A 202 S4 119.1 104.1 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 202 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 171 SG REMARK 620 2 SF4 A 202 S1 117.5 REMARK 620 3 SF4 A 202 S2 105.8 104.0 REMARK 620 4 SF4 A 202 S3 120.0 103.5 104.1 REMARK 620 N 1 2 3 DBREF 9DEU A 1 192 UNP Q9WZJ0 QUEH_THEMA 1 192 SEQRES 1 A 192 MET GLY THR VAL LEU ILE HIS VAL CYS CYS ALA PRO ASP SEQRES 2 A 192 LEU LEU THR THR ILE PHE HIS VAL ARG ASP ALA GLU PHE SEQRES 3 A 192 PHE PHE TYR ASN PRO ASN ILE GLN PRO LEU SER GLU TYR SEQRES 4 A 192 GLU LYS ARG ARG GLU ALA VAL ASP LYS VAL ALA ASN HIS SEQRES 5 A 192 PHE SER LEU ASN VAL ARG TYR GLY GLU TYR SER THR GLU SEQRES 6 A 192 GLU ILE ARG LYS TRP TYR THR ALA VAL LYS ASP TYR LYS SEQRES 7 A 192 ASP LEU GLY GLU GLY SER LYS ARG CYS GLU ARG CYS ILE SEQRES 8 A 192 SER PHE LEU LEU GLU ARG THR ALA GLN GLU ALA ARG LYS SEQRES 9 A 192 ARG GLY HIS GLU SER PHE SER THR THR LEU LEU ALA SER SEQRES 10 A 192 PRO ARG LYS ASN LEU PRO MET ILE GLU ASN ILE GLY LYS SEQRES 11 A 192 THR ILE GLU GLU LYS TYR GLY VAL LYS PHE PHE PHE LYS SEQRES 12 A 192 ASN PHE ARG LYS GLY GLY ALA TYR GLN GLU GLY VAL ARG SEQRES 13 A 192 LEU SER LYS GLU LEU GLY ILE TYR ARG GLN ASN TYR CYS SEQRES 14 A 192 GLY CYS VAL PHE SER LEU LEU GLU ARG ARG GLU LYS HIS SEQRES 15 A 192 ALA GLU ILE SER ARG LYS ARG GLY HIS MET HET 56B A 201 32 HET SF4 A 202 8 HET CL A 203 1 HET ZN A 204 1 HETNAM 56B 2-AMINO-5-({[(1S,4S,5R)-4,5-DIHYDROXYCYCLOPENT-2-EN-1- HETNAM 2 56B YL]AMINO}METHYL)-7-(5-O-PHOSPHONO-BETA-D- HETNAM 3 56B RIBOFURANOSYL)-3,7-DIHYDRO-4H-PYRROLO[2,3-D]PYRIMIDIN- HETNAM 4 56B 4-ONE HETNAM SF4 IRON/SULFUR CLUSTER HETNAM CL CHLORIDE ION HETNAM ZN ZINC ION FORMUL 2 56B C17 H24 N5 O10 P FORMUL 3 SF4 FE4 S4 FORMUL 4 CL CL 1- FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *57(H2 O) HELIX 1 AA1 CYS A 10 ILE A 18 1 9 HELIX 2 AA2 PRO A 35 SER A 54 1 20 HELIX 3 AA3 SER A 63 VAL A 74 1 12 HELIX 4 AA4 ARG A 86 ARG A 105 1 20 HELIX 5 AA5 LEU A 114 SER A 117 5 4 HELIX 6 AA6 ASN A 121 GLY A 137 1 17 HELIX 7 AA7 GLY A 149 GLY A 162 1 14 SHEET 1 AA1 5 VAL A 57 TYR A 59 0 SHEET 2 AA1 5 ALA A 24 PHE A 28 1 N PHE A 26 O ARG A 58 SHEET 3 AA1 5 VAL A 4 VAL A 8 1 N ILE A 6 O GLU A 25 SHEET 4 AA1 5 SER A 109 THR A 112 1 O SER A 111 N HIS A 7 SHEET 5 AA1 5 LYS A 139 PHE A 140 1 O LYS A 139 N PHE A 110 LINK SG CYS A 9 ZN ZN A 204 1555 1555 2.24 LINK SG CYS A 10 ZN ZN A 204 1555 1555 2.30 LINK OD2 ASP A 13 ZN ZN A 204 1555 1555 1.96 LINK SG CYS A 87 FE2 SF4 A 202 1555 1555 2.30 LINK SG CYS A 90 FE3 SF4 A 202 1555 1555 2.36 LINK SG CYS A 169 FE1 SF4 A 202 1555 1555 2.29 LINK SG CYS A 171 FE4 SF4 A 202 1555 1555 2.35 CISPEP 1 GLN A 34 PRO A 35 0 -3.66 CRYST1 53.647 105.194 73.792 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018640 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009506 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013552 0.00000