data_9DG1 # _entry.id 9DG1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9DG1 pdb_00009dg1 10.2210/pdb9dg1/pdb WWPDB D_1000288028 ? ? EMDB EMD-46821 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9DG1 _pdbx_database_status.recvd_initial_deposition_date 2024-09-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Structure of Plasmodium falciparum apicoplast DNA polymerase in complex with DNA (exo-minus)' _pdbx_database_related.db_id EMD-46821 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email yg60@rice.edu _pdbx_contact_author.name_first Yang _pdbx_contact_author.name_last Gao _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-4037-0431 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lo, C.-Y.' 1 ? 'Gao, Y.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Cryo-EM structures of binary and ternary complexes of the Plasmodium falciparum apicoplast DNA polymerase' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lo, C.-Y.' 1 ? primary 'Ung, A.' 2 ? primary 'Nelson, S.W.' 3 ? primary 'Gao, Y.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Plastid replication-repair enzyme' 74002.891 1 2.7.7.7 'D82N, E84Q' ? ? 2 polymer syn ;DNA (5'-D(P*AP*CP*TP*CP*TP*AP*CP*GP*GP*AP*TP*GP*CP*CP*TP*CP*AP*CP*AP*G)-3') ; 8864.712 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*AP*CP*TP*GP*TP*GP*AP*GP*GP*CP*AP*TP*CP*CP*GP*TP*AP*GP*(2DA))-3') ; 6158.002 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;DEITKKYIKDNIINVDDNIIKKKDIFKLKNENNEITECAFEYFESKKKFDDDIESRFFIINDNNYNENINLIYKDIKYCG LNIQTTGLEVFDENIRLIQIAVENYPVIIYDMFNINKKDILDGLRKVLENKNIIKIIQNGKFDAKFLLHNNFKIENIFDT YIASKLLDKNKNMYGFKLNNIVEKYLNVILDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKEEIKKENLHIVND IENKCILPICDMELNGIKVDLENLQKSTNEILNELNIEKDNLKKKLKDENINVNSQQQVLKALQKNNVRDISNKLIENTS DSNLKNFLNHEEIISLRNYRRLYKLYSAFYLKLPLHINTKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQKNIREIFIP NDNNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKNIPDINKEDRHIAKAINFGLIYGMNYVNLKN YANTYYGLNMSLDQCLYFYNSFFEHYKGIYKWHNQVKQKRALQYSTLSNRKVIFPYFSFTKALNYPVQGTCADILKLALV DLYDNLKDINGKIILCVHDEIIIEVNKKFQEEALKILVQSMENSASYFLKKVKCEVSVKIAENWGSKD ; ;DEITKKYIKDNIINVDDNIIKKKDIFKLKNENNEITECAFEYFESKKKFDDDIESRFFIINDNNYNENINLIYKDIKYCG LNIQTTGLEVFDENIRLIQIAVENYPVIIYDMFNINKKDILDGLRKVLENKNIIKIIQNGKFDAKFLLHNNFKIENIFDT YIASKLLDKNKNMYGFKLNNIVEKYLNVILDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKEEIKKENLHIVND IENKCILPICDMELNGIKVDLENLQKSTNEILNELNIEKDNLKKKLKDENINVNSQQQVLKALQKNNVRDISNKLIENTS DSNLKNFLNHEEIISLRNYRRLYKLYSAFYLKLPLHINTKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQKNIREIFIP NDNNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKNIPDINKEDRHIAKAINFGLIYGMNYVNLKN YANTYYGLNMSLDQCLYFYNSFFEHYKGIYKWHNQVKQKRALQYSTLSNRKVIFPYFSFTKALNYPVQGTCADILKLALV DLYDNLKDINGKIILCVHDEIIIEVNKKFQEEALKILVQSMENSASYFLKKVKCEVSVKIAENWGSKD ; A ? 2 polydeoxyribonucleotide no no ;(DG)(DC)(DA)(DG)(DT)(DC)(DA)(DG)(DC)(DT)(DC)(DT)(DA)(DC)(DG)(DG)(DA)(DT)(DG)(DC) (DC)(DT)(DC)(DA)(DC)(DA)(DG)(DC)(DA) ; GCAGTCAGCTCTACGGATGCCTCACAGCA E ? 3 polydeoxyribonucleotide no yes ;(DT)(DA)(DC)(DT)(DG)(DT)(DG)(DA)(DG)(DG)(DC)(DA)(DT)(DC)(DC)(DG)(DT)(DA)(DG) (2DA) ; TACTGTGAGGCATCCGTAGA F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 GLU n 1 3 ILE n 1 4 THR n 1 5 LYS n 1 6 LYS n 1 7 TYR n 1 8 ILE n 1 9 LYS n 1 10 ASP n 1 11 ASN n 1 12 ILE n 1 13 ILE n 1 14 ASN n 1 15 VAL n 1 16 ASP n 1 17 ASP n 1 18 ASN n 1 19 ILE n 1 20 ILE n 1 21 LYS n 1 22 LYS n 1 23 LYS n 1 24 ASP n 1 25 ILE n 1 26 PHE n 1 27 LYS n 1 28 LEU n 1 29 LYS n 1 30 ASN n 1 31 GLU n 1 32 ASN n 1 33 ASN n 1 34 GLU n 1 35 ILE n 1 36 THR n 1 37 GLU n 1 38 CYS n 1 39 ALA n 1 40 PHE n 1 41 GLU n 1 42 TYR n 1 43 PHE n 1 44 GLU n 1 45 SER n 1 46 LYS n 1 47 LYS n 1 48 LYS n 1 49 PHE n 1 50 ASP n 1 51 ASP n 1 52 ASP n 1 53 ILE n 1 54 GLU n 1 55 SER n 1 56 ARG n 1 57 PHE n 1 58 PHE n 1 59 ILE n 1 60 ILE n 1 61 ASN n 1 62 ASP n 1 63 ASN n 1 64 ASN n 1 65 TYR n 1 66 ASN n 1 67 GLU n 1 68 ASN n 1 69 ILE n 1 70 ASN n 1 71 LEU n 1 72 ILE n 1 73 TYR n 1 74 LYS n 1 75 ASP n 1 76 ILE n 1 77 LYS n 1 78 TYR n 1 79 CYS n 1 80 GLY n 1 81 LEU n 1 82 ASN n 1 83 ILE n 1 84 GLN n 1 85 THR n 1 86 THR n 1 87 GLY n 1 88 LEU n 1 89 GLU n 1 90 VAL n 1 91 PHE n 1 92 ASP n 1 93 GLU n 1 94 ASN n 1 95 ILE n 1 96 ARG n 1 97 LEU n 1 98 ILE n 1 99 GLN n 1 100 ILE n 1 101 ALA n 1 102 VAL n 1 103 GLU n 1 104 ASN n 1 105 TYR n 1 106 PRO n 1 107 VAL n 1 108 ILE n 1 109 ILE n 1 110 TYR n 1 111 ASP n 1 112 MET n 1 113 PHE n 1 114 ASN n 1 115 ILE n 1 116 ASN n 1 117 LYS n 1 118 LYS n 1 119 ASP n 1 120 ILE n 1 121 LEU n 1 122 ASP n 1 123 GLY n 1 124 LEU n 1 125 ARG n 1 126 LYS n 1 127 VAL n 1 128 LEU n 1 129 GLU n 1 130 ASN n 1 131 LYS n 1 132 ASN n 1 133 ILE n 1 134 ILE n 1 135 LYS n 1 136 ILE n 1 137 ILE n 1 138 GLN n 1 139 ASN n 1 140 GLY n 1 141 LYS n 1 142 PHE n 1 143 ASP n 1 144 ALA n 1 145 LYS n 1 146 PHE n 1 147 LEU n 1 148 LEU n 1 149 HIS n 1 150 ASN n 1 151 ASN n 1 152 PHE n 1 153 LYS n 1 154 ILE n 1 155 GLU n 1 156 ASN n 1 157 ILE n 1 158 PHE n 1 159 ASP n 1 160 THR n 1 161 TYR n 1 162 ILE n 1 163 ALA n 1 164 SER n 1 165 LYS n 1 166 LEU n 1 167 LEU n 1 168 ASP n 1 169 LYS n 1 170 ASN n 1 171 LYS n 1 172 ASN n 1 173 MET n 1 174 TYR n 1 175 GLY n 1 176 PHE n 1 177 LYS n 1 178 LEU n 1 179 ASN n 1 180 ASN n 1 181 ILE n 1 182 VAL n 1 183 GLU n 1 184 LYS n 1 185 TYR n 1 186 LEU n 1 187 ASN n 1 188 VAL n 1 189 ILE n 1 190 LEU n 1 191 ASP n 1 192 LYS n 1 193 GLN n 1 194 GLN n 1 195 GLN n 1 196 ASN n 1 197 SER n 1 198 VAL n 1 199 TRP n 1 200 ASN n 1 201 ASN n 1 202 SER n 1 203 LEU n 1 204 LEU n 1 205 ASN n 1 206 ASN n 1 207 ASN n 1 208 GLN n 1 209 LEU n 1 210 PHE n 1 211 TYR n 1 212 ALA n 1 213 ALA n 1 214 ARG n 1 215 ASP n 1 216 SER n 1 217 SER n 1 218 CYS n 1 219 LEU n 1 220 LEU n 1 221 LYS n 1 222 LEU n 1 223 TYR n 1 224 LYS n 1 225 LYS n 1 226 LEU n 1 227 LYS n 1 228 GLU n 1 229 GLU n 1 230 ILE n 1 231 LYS n 1 232 LYS n 1 233 GLU n 1 234 ASN n 1 235 LEU n 1 236 HIS n 1 237 ILE n 1 238 VAL n 1 239 ASN n 1 240 ASP n 1 241 ILE n 1 242 GLU n 1 243 ASN n 1 244 LYS n 1 245 CYS n 1 246 ILE n 1 247 LEU n 1 248 PRO n 1 249 ILE n 1 250 CYS n 1 251 ASP n 1 252 MET n 1 253 GLU n 1 254 LEU n 1 255 ASN n 1 256 GLY n 1 257 ILE n 1 258 LYS n 1 259 VAL n 1 260 ASP n 1 261 LEU n 1 262 GLU n 1 263 ASN n 1 264 LEU n 1 265 GLN n 1 266 LYS n 1 267 SER n 1 268 THR n 1 269 ASN n 1 270 GLU n 1 271 ILE n 1 272 LEU n 1 273 ASN n 1 274 GLU n 1 275 LEU n 1 276 ASN n 1 277 ILE n 1 278 GLU n 1 279 LYS n 1 280 ASP n 1 281 ASN n 1 282 LEU n 1 283 LYS n 1 284 LYS n 1 285 LYS n 1 286 LEU n 1 287 LYS n 1 288 ASP n 1 289 GLU n 1 290 ASN n 1 291 ILE n 1 292 ASN n 1 293 VAL n 1 294 ASN n 1 295 SER n 1 296 GLN n 1 297 GLN n 1 298 GLN n 1 299 VAL n 1 300 LEU n 1 301 LYS n 1 302 ALA n 1 303 LEU n 1 304 GLN n 1 305 LYS n 1 306 ASN n 1 307 ASN n 1 308 VAL n 1 309 ARG n 1 310 ASP n 1 311 ILE n 1 312 SER n 1 313 ASN n 1 314 LYS n 1 315 LEU n 1 316 ILE n 1 317 GLU n 1 318 ASN n 1 319 THR n 1 320 SER n 1 321 ASP n 1 322 SER n 1 323 ASN n 1 324 LEU n 1 325 LYS n 1 326 ASN n 1 327 PHE n 1 328 LEU n 1 329 ASN n 1 330 HIS n 1 331 GLU n 1 332 GLU n 1 333 ILE n 1 334 ILE n 1 335 SER n 1 336 LEU n 1 337 ARG n 1 338 ASN n 1 339 TYR n 1 340 ARG n 1 341 ARG n 1 342 LEU n 1 343 TYR n 1 344 LYS n 1 345 LEU n 1 346 TYR n 1 347 SER n 1 348 ALA n 1 349 PHE n 1 350 TYR n 1 351 LEU n 1 352 LYS n 1 353 LEU n 1 354 PRO n 1 355 LEU n 1 356 HIS n 1 357 ILE n 1 358 ASN n 1 359 THR n 1 360 LYS n 1 361 THR n 1 362 ASN n 1 363 LYS n 1 364 ILE n 1 365 HIS n 1 366 THR n 1 367 THR n 1 368 PHE n 1 369 ASN n 1 370 GLN n 1 371 LEU n 1 372 LYS n 1 373 THR n 1 374 PHE n 1 375 SER n 1 376 GLY n 1 377 ARG n 1 378 PHE n 1 379 SER n 1 380 SER n 1 381 GLU n 1 382 LYS n 1 383 PRO n 1 384 ASN n 1 385 LEU n 1 386 GLN n 1 387 GLN n 1 388 ILE n 1 389 PRO n 1 390 ARG n 1 391 GLN n 1 392 LYS n 1 393 ASN n 1 394 ILE n 1 395 ARG n 1 396 GLU n 1 397 ILE n 1 398 PHE n 1 399 ILE n 1 400 PRO n 1 401 ASN n 1 402 ASP n 1 403 ASN n 1 404 ASN n 1 405 ILE n 1 406 PHE n 1 407 ILE n 1 408 ILE n 1 409 ALA n 1 410 ASP n 1 411 PHE n 1 412 LYS n 1 413 GLN n 1 414 ILE n 1 415 GLU n 1 416 LEU n 1 417 LYS n 1 418 ILE n 1 419 ALA n 1 420 ALA n 1 421 GLU n 1 422 ILE n 1 423 THR n 1 424 ASN n 1 425 ASP n 1 426 GLU n 1 427 ILE n 1 428 MET n 1 429 LEU n 1 430 LYS n 1 431 ALA n 1 432 TYR n 1 433 ASN n 1 434 ASN n 1 435 ASN n 1 436 ILE n 1 437 ASP n 1 438 LEU n 1 439 HIS n 1 440 THR n 1 441 LEU n 1 442 THR n 1 443 ALA n 1 444 SER n 1 445 ILE n 1 446 ILE n 1 447 THR n 1 448 LYS n 1 449 LYS n 1 450 ASN n 1 451 ILE n 1 452 PRO n 1 453 ASP n 1 454 ILE n 1 455 ASN n 1 456 LYS n 1 457 GLU n 1 458 ASP n 1 459 ARG n 1 460 HIS n 1 461 ILE n 1 462 ALA n 1 463 LYS n 1 464 ALA n 1 465 ILE n 1 466 ASN n 1 467 PHE n 1 468 GLY n 1 469 LEU n 1 470 ILE n 1 471 TYR n 1 472 GLY n 1 473 MET n 1 474 ASN n 1 475 TYR n 1 476 VAL n 1 477 ASN n 1 478 LEU n 1 479 LYS n 1 480 ASN n 1 481 TYR n 1 482 ALA n 1 483 ASN n 1 484 THR n 1 485 TYR n 1 486 TYR n 1 487 GLY n 1 488 LEU n 1 489 ASN n 1 490 MET n 1 491 SER n 1 492 LEU n 1 493 ASP n 1 494 GLN n 1 495 CYS n 1 496 LEU n 1 497 TYR n 1 498 PHE n 1 499 TYR n 1 500 ASN n 1 501 SER n 1 502 PHE n 1 503 PHE n 1 504 GLU n 1 505 HIS n 1 506 TYR n 1 507 LYS n 1 508 GLY n 1 509 ILE n 1 510 TYR n 1 511 LYS n 1 512 TRP n 1 513 HIS n 1 514 ASN n 1 515 GLN n 1 516 VAL n 1 517 LYS n 1 518 GLN n 1 519 LYS n 1 520 ARG n 1 521 ALA n 1 522 LEU n 1 523 GLN n 1 524 TYR n 1 525 SER n 1 526 THR n 1 527 LEU n 1 528 SER n 1 529 ASN n 1 530 ARG n 1 531 LYS n 1 532 VAL n 1 533 ILE n 1 534 PHE n 1 535 PRO n 1 536 TYR n 1 537 PHE n 1 538 SER n 1 539 PHE n 1 540 THR n 1 541 LYS n 1 542 ALA n 1 543 LEU n 1 544 ASN n 1 545 TYR n 1 546 PRO n 1 547 VAL n 1 548 GLN n 1 549 GLY n 1 550 THR n 1 551 CYS n 1 552 ALA n 1 553 ASP n 1 554 ILE n 1 555 LEU n 1 556 LYS n 1 557 LEU n 1 558 ALA n 1 559 LEU n 1 560 VAL n 1 561 ASP n 1 562 LEU n 1 563 TYR n 1 564 ASP n 1 565 ASN n 1 566 LEU n 1 567 LYS n 1 568 ASP n 1 569 ILE n 1 570 ASN n 1 571 GLY n 1 572 LYS n 1 573 ILE n 1 574 ILE n 1 575 LEU n 1 576 CYS n 1 577 VAL n 1 578 HIS n 1 579 ASP n 1 580 GLU n 1 581 ILE n 1 582 ILE n 1 583 ILE n 1 584 GLU n 1 585 VAL n 1 586 ASN n 1 587 LYS n 1 588 LYS n 1 589 PHE n 1 590 GLN n 1 591 GLU n 1 592 GLU n 1 593 ALA n 1 594 LEU n 1 595 LYS n 1 596 ILE n 1 597 LEU n 1 598 VAL n 1 599 GLN n 1 600 SER n 1 601 MET n 1 602 GLU n 1 603 ASN n 1 604 SER n 1 605 ALA n 1 606 SER n 1 607 TYR n 1 608 PHE n 1 609 LEU n 1 610 LYS n 1 611 LYS n 1 612 VAL n 1 613 LYS n 1 614 CYS n 1 615 GLU n 1 616 VAL n 1 617 SER n 1 618 VAL n 1 619 LYS n 1 620 ILE n 1 621 ALA n 1 622 GLU n 1 623 ASN n 1 624 TRP n 1 625 GLY n 1 626 SER n 1 627 LYS n 1 628 ASP n 2 1 DG n 2 2 DC n 2 3 DA n 2 4 DG n 2 5 DT n 2 6 DC n 2 7 DA n 2 8 DG n 2 9 DC n 2 10 DT n 2 11 DC n 2 12 DT n 2 13 DA n 2 14 DC n 2 15 DG n 2 16 DG n 2 17 DA n 2 18 DT n 2 19 DG n 2 20 DC n 2 21 DC n 2 22 DT n 2 23 DC n 2 24 DA n 2 25 DC n 2 26 DA n 2 27 DG n 2 28 DC n 2 29 DA n 3 1 DT n 3 2 DA n 3 3 DC n 3 4 DT n 3 5 DG n 3 6 DT n 3 7 DG n 3 8 DA n 3 9 DG n 3 10 DG n 3 11 DC n 3 12 DA n 3 13 DT n 3 14 DC n 3 15 DC n 3 16 DG n 3 17 DT n 3 18 DA n 3 19 DG n 3 20 2DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 628 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Plasmodium falciparum 3D7' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 36329 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ;Escherichia coli 'BL21-Gold(DE3)pLysS AG' ; _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 866768 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 29 'Homo sapiens' human 9606 ? 3 1 sample 1 20 'Homo sapiens' human 9606 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2DA 'DNA linking' n "2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O5 P' 315.222 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 ? ? ? A . n A 1 2 GLU 2 2 ? ? ? A . n A 1 3 ILE 3 3 ? ? ? A . n A 1 4 THR 4 4 ? ? ? A . n A 1 5 LYS 5 5 ? ? ? A . n A 1 6 LYS 6 6 ? ? ? A . n A 1 7 TYR 7 7 ? ? ? A . n A 1 8 ILE 8 8 ? ? ? A . n A 1 9 LYS 9 9 ? ? ? A . n A 1 10 ASP 10 10 ? ? ? A . n A 1 11 ASN 11 11 ? ? ? A . n A 1 12 ILE 12 12 ? ? ? A . n A 1 13 ILE 13 13 ? ? ? A . n A 1 14 ASN 14 14 ? ? ? A . n A 1 15 VAL 15 15 ? ? ? A . n A 1 16 ASP 16 16 ? ? ? A . n A 1 17 ASP 17 17 ? ? ? A . n A 1 18 ASN 18 18 ? ? ? A . n A 1 19 ILE 19 19 ? ? ? A . n A 1 20 ILE 20 20 ? ? ? A . n A 1 21 LYS 21 21 ? ? ? A . n A 1 22 LYS 22 22 ? ? ? A . n A 1 23 LYS 23 23 ? ? ? A . n A 1 24 ASP 24 24 ? ? ? A . n A 1 25 ILE 25 25 ? ? ? A . n A 1 26 PHE 26 26 ? ? ? A . n A 1 27 LYS 27 27 ? ? ? A . n A 1 28 LEU 28 28 ? ? ? A . n A 1 29 LYS 29 29 ? ? ? A . n A 1 30 ASN 30 30 ? ? ? A . n A 1 31 GLU 31 31 ? ? ? A . n A 1 32 ASN 32 32 ? ? ? A . n A 1 33 ASN 33 33 ? ? ? A . n A 1 34 GLU 34 34 ? ? ? A . n A 1 35 ILE 35 35 ? ? ? A . n A 1 36 THR 36 36 ? ? ? A . n A 1 37 GLU 37 37 ? ? ? A . n A 1 38 CYS 38 38 ? ? ? A . n A 1 39 ALA 39 39 ? ? ? A . n A 1 40 PHE 40 40 ? ? ? A . n A 1 41 GLU 41 41 ? ? ? A . n A 1 42 TYR 42 42 ? ? ? A . n A 1 43 PHE 43 43 ? ? ? A . n A 1 44 GLU 44 44 ? ? ? A . n A 1 45 SER 45 45 ? ? ? A . n A 1 46 LYS 46 46 ? ? ? A . n A 1 47 LYS 47 47 ? ? ? A . n A 1 48 LYS 48 48 ? ? ? A . n A 1 49 PHE 49 49 ? ? ? A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 PHE 58 58 58 PHE PHE A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 ASN 66 66 66 ASN ASN A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 CYS 79 79 79 CYS CYS A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 GLN 84 84 84 GLN GLN A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 PHE 91 91 91 PHE PHE A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 ILE 95 95 95 ILE ILE A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 GLN 99 99 99 GLN GLN A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 ASN 104 104 104 ASN ASN A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 VAL 107 107 107 VAL VAL A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 ILE 109 109 109 ILE ILE A . n A 1 110 TYR 110 110 110 TYR TYR A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 MET 112 112 112 MET MET A . n A 1 113 PHE 113 113 113 PHE PHE A . n A 1 114 ASN 114 114 114 ASN ASN A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 ILE 120 120 120 ILE ILE A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 ASP 122 122 122 ASP ASP A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 ARG 125 125 125 ARG ARG A . n A 1 126 LYS 126 126 126 LYS LYS A . n A 1 127 VAL 127 127 127 VAL VAL A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 GLU 129 129 129 GLU GLU A . n A 1 130 ASN 130 130 130 ASN ASN A . n A 1 131 LYS 131 131 131 LYS LYS A . n A 1 132 ASN 132 132 132 ASN ASN A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 ILE 134 134 134 ILE ILE A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 ILE 136 136 136 ILE ILE A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 GLN 138 138 138 GLN GLN A . n A 1 139 ASN 139 139 139 ASN ASN A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 LYS 141 141 141 LYS LYS A . n A 1 142 PHE 142 142 142 PHE PHE A . n A 1 143 ASP 143 143 143 ASP ASP A . n A 1 144 ALA 144 144 144 ALA ALA A . n A 1 145 LYS 145 145 145 LYS LYS A . n A 1 146 PHE 146 146 146 PHE PHE A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 HIS 149 149 149 HIS HIS A . n A 1 150 ASN 150 150 150 ASN ASN A . n A 1 151 ASN 151 151 151 ASN ASN A . n A 1 152 PHE 152 152 152 PHE PHE A . n A 1 153 LYS 153 153 153 LYS LYS A . n A 1 154 ILE 154 154 154 ILE ILE A . n A 1 155 GLU 155 155 155 GLU GLU A . n A 1 156 ASN 156 156 156 ASN ASN A . n A 1 157 ILE 157 157 157 ILE ILE A . n A 1 158 PHE 158 158 158 PHE PHE A . n A 1 159 ASP 159 159 159 ASP ASP A . n A 1 160 THR 160 160 160 THR THR A . n A 1 161 TYR 161 161 161 TYR TYR A . n A 1 162 ILE 162 162 162 ILE ILE A . n A 1 163 ALA 163 163 163 ALA ALA A . n A 1 164 SER 164 164 164 SER SER A . n A 1 165 LYS 165 165 165 LYS LYS A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 LEU 167 167 167 LEU LEU A . n A 1 168 ASP 168 168 168 ASP ASP A . n A 1 169 LYS 169 169 169 LYS LYS A . n A 1 170 ASN 170 170 170 ASN ASN A . n A 1 171 LYS 171 171 171 LYS LYS A . n A 1 172 ASN 172 172 172 ASN ASN A . n A 1 173 MET 173 173 173 MET MET A . n A 1 174 TYR 174 174 ? ? ? A . n A 1 175 GLY 175 175 ? ? ? A . n A 1 176 PHE 176 176 ? ? ? A . n A 1 177 LYS 177 177 ? ? ? A . n A 1 178 LEU 178 178 ? ? ? A . n A 1 179 ASN 179 179 ? ? ? A . n A 1 180 ASN 180 180 ? ? ? A . n A 1 181 ILE 181 181 ? ? ? A . n A 1 182 VAL 182 182 ? ? ? A . n A 1 183 GLU 183 183 ? ? ? A . n A 1 184 LYS 184 184 ? ? ? A . n A 1 185 TYR 185 185 ? ? ? A . n A 1 186 LEU 186 186 ? ? ? A . n A 1 187 ASN 187 187 ? ? ? A . n A 1 188 VAL 188 188 ? ? ? A . n A 1 189 ILE 189 189 ? ? ? A . n A 1 190 LEU 190 190 ? ? ? A . n A 1 191 ASP 191 191 ? ? ? A . n A 1 192 LYS 192 192 ? ? ? A . n A 1 193 GLN 193 193 ? ? ? A . n A 1 194 GLN 194 194 ? ? ? A . n A 1 195 GLN 195 195 ? ? ? A . n A 1 196 ASN 196 196 ? ? ? A . n A 1 197 SER 197 197 ? ? ? A . n A 1 198 VAL 198 198 ? ? ? A . n A 1 199 TRP 199 199 ? ? ? A . n A 1 200 ASN 200 200 ? ? ? A . n A 1 201 ASN 201 201 ? ? ? A . n A 1 202 SER 202 202 ? ? ? A . n A 1 203 LEU 203 203 ? ? ? A . n A 1 204 LEU 204 204 ? ? ? A . n A 1 205 ASN 205 205 ? ? ? A . n A 1 206 ASN 206 206 ? ? ? A . n A 1 207 ASN 207 207 ? ? ? A . n A 1 208 GLN 208 208 208 GLN GLN A . n A 1 209 LEU 209 209 209 LEU LEU A . n A 1 210 PHE 210 210 210 PHE PHE A . n A 1 211 TYR 211 211 211 TYR TYR A . n A 1 212 ALA 212 212 212 ALA ALA A . n A 1 213 ALA 213 213 213 ALA ALA A . n A 1 214 ARG 214 214 214 ARG ARG A . n A 1 215 ASP 215 215 215 ASP ASP A . n A 1 216 SER 216 216 216 SER SER A . n A 1 217 SER 217 217 217 SER SER A . n A 1 218 CYS 218 218 218 CYS CYS A . n A 1 219 LEU 219 219 219 LEU LEU A . n A 1 220 LEU 220 220 220 LEU LEU A . n A 1 221 LYS 221 221 221 LYS LYS A . n A 1 222 LEU 222 222 222 LEU LEU A . n A 1 223 TYR 223 223 223 TYR TYR A . n A 1 224 LYS 224 224 224 LYS LYS A . n A 1 225 LYS 225 225 225 LYS LYS A . n A 1 226 LEU 226 226 226 LEU LEU A . n A 1 227 LYS 227 227 227 LYS LYS A . n A 1 228 GLU 228 228 228 GLU GLU A . n A 1 229 GLU 229 229 229 GLU GLU A . n A 1 230 ILE 230 230 230 ILE ILE A . n A 1 231 LYS 231 231 231 LYS LYS A . n A 1 232 LYS 232 232 232 LYS LYS A . n A 1 233 GLU 233 233 233 GLU GLU A . n A 1 234 ASN 234 234 234 ASN ASN A . n A 1 235 LEU 235 235 235 LEU LEU A . n A 1 236 HIS 236 236 236 HIS HIS A . n A 1 237 ILE 237 237 237 ILE ILE A . n A 1 238 VAL 238 238 238 VAL VAL A . n A 1 239 ASN 239 239 239 ASN ASN A . n A 1 240 ASP 240 240 240 ASP ASP A . n A 1 241 ILE 241 241 241 ILE ILE A . n A 1 242 GLU 242 242 242 GLU GLU A . n A 1 243 ASN 243 243 243 ASN ASN A . n A 1 244 LYS 244 244 244 LYS LYS A . n A 1 245 CYS 245 245 245 CYS CYS A . n A 1 246 ILE 246 246 246 ILE ILE A . n A 1 247 LEU 247 247 247 LEU LEU A . n A 1 248 PRO 248 248 248 PRO PRO A . n A 1 249 ILE 249 249 249 ILE ILE A . n A 1 250 CYS 250 250 250 CYS CYS A . n A 1 251 ASP 251 251 251 ASP ASP A . n A 1 252 MET 252 252 252 MET MET A . n A 1 253 GLU 253 253 253 GLU GLU A . n A 1 254 LEU 254 254 254 LEU LEU A . n A 1 255 ASN 255 255 255 ASN ASN A . n A 1 256 GLY 256 256 256 GLY GLY A . n A 1 257 ILE 257 257 257 ILE ILE A . n A 1 258 LYS 258 258 258 LYS LYS A . n A 1 259 VAL 259 259 259 VAL VAL A . n A 1 260 ASP 260 260 260 ASP ASP A . n A 1 261 LEU 261 261 261 LEU LEU A . n A 1 262 GLU 262 262 262 GLU GLU A . n A 1 263 ASN 263 263 263 ASN ASN A . n A 1 264 LEU 264 264 264 LEU LEU A . n A 1 265 GLN 265 265 265 GLN GLN A . n A 1 266 LYS 266 266 266 LYS LYS A . n A 1 267 SER 267 267 267 SER SER A . n A 1 268 THR 268 268 268 THR THR A . n A 1 269 ASN 269 269 269 ASN ASN A . n A 1 270 GLU 270 270 270 GLU GLU A . n A 1 271 ILE 271 271 271 ILE ILE A . n A 1 272 LEU 272 272 272 LEU LEU A . n A 1 273 ASN 273 273 273 ASN ASN A . n A 1 274 GLU 274 274 274 GLU GLU A . n A 1 275 LEU 275 275 275 LEU LEU A . n A 1 276 ASN 276 276 276 ASN ASN A . n A 1 277 ILE 277 277 277 ILE ILE A . n A 1 278 GLU 278 278 278 GLU GLU A . n A 1 279 LYS 279 279 279 LYS LYS A . n A 1 280 ASP 280 280 280 ASP ASP A . n A 1 281 ASN 281 281 281 ASN ASN A . n A 1 282 LEU 282 282 282 LEU LEU A . n A 1 283 LYS 283 283 283 LYS LYS A . n A 1 284 LYS 284 284 284 LYS LYS A . n A 1 285 LYS 285 285 285 LYS LYS A . n A 1 286 LEU 286 286 286 LEU LEU A . n A 1 287 LYS 287 287 287 LYS LYS A . n A 1 288 ASP 288 288 288 ASP ASP A . n A 1 289 GLU 289 289 289 GLU GLU A . n A 1 290 ASN 290 290 290 ASN ASN A . n A 1 291 ILE 291 291 291 ILE ILE A . n A 1 292 ASN 292 292 292 ASN ASN A . n A 1 293 VAL 293 293 293 VAL VAL A . n A 1 294 ASN 294 294 294 ASN ASN A . n A 1 295 SER 295 295 295 SER SER A . n A 1 296 GLN 296 296 296 GLN GLN A . n A 1 297 GLN 297 297 297 GLN GLN A . n A 1 298 GLN 298 298 298 GLN GLN A . n A 1 299 VAL 299 299 299 VAL VAL A . n A 1 300 LEU 300 300 300 LEU LEU A . n A 1 301 LYS 301 301 301 LYS LYS A . n A 1 302 ALA 302 302 302 ALA ALA A . n A 1 303 LEU 303 303 303 LEU LEU A . n A 1 304 GLN 304 304 304 GLN GLN A . n A 1 305 LYS 305 305 305 LYS LYS A . n A 1 306 ASN 306 306 306 ASN ASN A . n A 1 307 ASN 307 307 307 ASN ASN A . n A 1 308 VAL 308 308 308 VAL VAL A . n A 1 309 ARG 309 309 309 ARG ARG A . n A 1 310 ASP 310 310 310 ASP ASP A . n A 1 311 ILE 311 311 311 ILE ILE A . n A 1 312 SER 312 312 312 SER SER A . n A 1 313 ASN 313 313 313 ASN ASN A . n A 1 314 LYS 314 314 314 LYS LYS A . n A 1 315 LEU 315 315 315 LEU LEU A . n A 1 316 ILE 316 316 316 ILE ILE A . n A 1 317 GLU 317 317 317 GLU GLU A . n A 1 318 ASN 318 318 318 ASN ASN A . n A 1 319 THR 319 319 319 THR THR A . n A 1 320 SER 320 320 320 SER SER A . n A 1 321 ASP 321 321 321 ASP ASP A . n A 1 322 SER 322 322 322 SER SER A . n A 1 323 ASN 323 323 323 ASN ASN A . n A 1 324 LEU 324 324 324 LEU LEU A . n A 1 325 LYS 325 325 325 LYS LYS A . n A 1 326 ASN 326 326 326 ASN ASN A . n A 1 327 PHE 327 327 327 PHE PHE A . n A 1 328 LEU 328 328 328 LEU LEU A . n A 1 329 ASN 329 329 329 ASN ASN A . n A 1 330 HIS 330 330 330 HIS HIS A . n A 1 331 GLU 331 331 331 GLU GLU A . n A 1 332 GLU 332 332 332 GLU GLU A . n A 1 333 ILE 333 333 333 ILE ILE A . n A 1 334 ILE 334 334 334 ILE ILE A . n A 1 335 SER 335 335 335 SER SER A . n A 1 336 LEU 336 336 336 LEU LEU A . n A 1 337 ARG 337 337 337 ARG ARG A . n A 1 338 ASN 338 338 338 ASN ASN A . n A 1 339 TYR 339 339 339 TYR TYR A . n A 1 340 ARG 340 340 340 ARG ARG A . n A 1 341 ARG 341 341 341 ARG ARG A . n A 1 342 LEU 342 342 342 LEU LEU A . n A 1 343 TYR 343 343 343 TYR TYR A . n A 1 344 LYS 344 344 344 LYS LYS A . n A 1 345 LEU 345 345 345 LEU LEU A . n A 1 346 TYR 346 346 346 TYR TYR A . n A 1 347 SER 347 347 347 SER SER A . n A 1 348 ALA 348 348 348 ALA ALA A . n A 1 349 PHE 349 349 349 PHE PHE A . n A 1 350 TYR 350 350 350 TYR TYR A . n A 1 351 LEU 351 351 351 LEU LEU A . n A 1 352 LYS 352 352 352 LYS LYS A . n A 1 353 LEU 353 353 353 LEU LEU A . n A 1 354 PRO 354 354 354 PRO PRO A . n A 1 355 LEU 355 355 355 LEU LEU A . n A 1 356 HIS 356 356 356 HIS HIS A . n A 1 357 ILE 357 357 357 ILE ILE A . n A 1 358 ASN 358 358 358 ASN ASN A . n A 1 359 THR 359 359 359 THR THR A . n A 1 360 LYS 360 360 360 LYS LYS A . n A 1 361 THR 361 361 361 THR THR A . n A 1 362 ASN 362 362 362 ASN ASN A . n A 1 363 LYS 363 363 363 LYS LYS A . n A 1 364 ILE 364 364 364 ILE ILE A . n A 1 365 HIS 365 365 365 HIS HIS A . n A 1 366 THR 366 366 366 THR THR A . n A 1 367 THR 367 367 367 THR THR A . n A 1 368 PHE 368 368 368 PHE PHE A . n A 1 369 ASN 369 369 369 ASN ASN A . n A 1 370 GLN 370 370 370 GLN GLN A . n A 1 371 LEU 371 371 371 LEU LEU A . n A 1 372 LYS 372 372 372 LYS LYS A . n A 1 373 THR 373 373 373 THR THR A . n A 1 374 PHE 374 374 374 PHE PHE A . n A 1 375 SER 375 375 375 SER SER A . n A 1 376 GLY 376 376 376 GLY GLY A . n A 1 377 ARG 377 377 377 ARG ARG A . n A 1 378 PHE 378 378 378 PHE PHE A . n A 1 379 SER 379 379 379 SER SER A . n A 1 380 SER 380 380 380 SER SER A . n A 1 381 GLU 381 381 381 GLU GLU A . n A 1 382 LYS 382 382 382 LYS LYS A . n A 1 383 PRO 383 383 ? ? ? A . n A 1 384 ASN 384 384 ? ? ? A . n A 1 385 LEU 385 385 385 LEU LEU A . n A 1 386 GLN 386 386 386 GLN GLN A . n A 1 387 GLN 387 387 387 GLN GLN A . n A 1 388 ILE 388 388 388 ILE ILE A . n A 1 389 PRO 389 389 389 PRO PRO A . n A 1 390 ARG 390 390 390 ARG ARG A . n A 1 391 GLN 391 391 391 GLN GLN A . n A 1 392 LYS 392 392 392 LYS LYS A . n A 1 393 ASN 393 393 393 ASN ASN A . n A 1 394 ILE 394 394 394 ILE ILE A . n A 1 395 ARG 395 395 395 ARG ARG A . n A 1 396 GLU 396 396 396 GLU GLU A . n A 1 397 ILE 397 397 397 ILE ILE A . n A 1 398 PHE 398 398 398 PHE PHE A . n A 1 399 ILE 399 399 399 ILE ILE A . n A 1 400 PRO 400 400 400 PRO PRO A . n A 1 401 ASN 401 401 401 ASN ASN A . n A 1 402 ASP 402 402 402 ASP ASP A . n A 1 403 ASN 403 403 403 ASN ASN A . n A 1 404 ASN 404 404 404 ASN ASN A . n A 1 405 ILE 405 405 405 ILE ILE A . n A 1 406 PHE 406 406 406 PHE PHE A . n A 1 407 ILE 407 407 407 ILE ILE A . n A 1 408 ILE 408 408 408 ILE ILE A . n A 1 409 ALA 409 409 409 ALA ALA A . n A 1 410 ASP 410 410 410 ASP ASP A . n A 1 411 PHE 411 411 411 PHE PHE A . n A 1 412 LYS 412 412 412 LYS LYS A . n A 1 413 GLN 413 413 413 GLN GLN A . n A 1 414 ILE 414 414 414 ILE ILE A . n A 1 415 GLU 415 415 415 GLU GLU A . n A 1 416 LEU 416 416 416 LEU LEU A . n A 1 417 LYS 417 417 417 LYS LYS A . n A 1 418 ILE 418 418 418 ILE ILE A . n A 1 419 ALA 419 419 419 ALA ALA A . n A 1 420 ALA 420 420 420 ALA ALA A . n A 1 421 GLU 421 421 421 GLU GLU A . n A 1 422 ILE 422 422 ? ? ? A . n A 1 423 THR 423 423 ? ? ? A . n A 1 424 ASN 424 424 ? ? ? A . n A 1 425 ASP 425 425 425 ASP ASP A . n A 1 426 GLU 426 426 426 GLU GLU A . n A 1 427 ILE 427 427 427 ILE ILE A . n A 1 428 MET 428 428 428 MET MET A . n A 1 429 LEU 429 429 429 LEU LEU A . n A 1 430 LYS 430 430 430 LYS LYS A . n A 1 431 ALA 431 431 431 ALA ALA A . n A 1 432 TYR 432 432 432 TYR TYR A . n A 1 433 ASN 433 433 433 ASN ASN A . n A 1 434 ASN 434 434 434 ASN ASN A . n A 1 435 ASN 435 435 435 ASN ASN A . n A 1 436 ILE 436 436 436 ILE ILE A . n A 1 437 ASP 437 437 437 ASP ASP A . n A 1 438 LEU 438 438 438 LEU LEU A . n A 1 439 HIS 439 439 439 HIS HIS A . n A 1 440 THR 440 440 440 THR THR A . n A 1 441 LEU 441 441 441 LEU LEU A . n A 1 442 THR 442 442 442 THR THR A . n A 1 443 ALA 443 443 443 ALA ALA A . n A 1 444 SER 444 444 444 SER SER A . n A 1 445 ILE 445 445 445 ILE ILE A . n A 1 446 ILE 446 446 446 ILE ILE A . n A 1 447 THR 447 447 447 THR THR A . n A 1 448 LYS 448 448 448 LYS LYS A . n A 1 449 LYS 449 449 449 LYS LYS A . n A 1 450 ASN 450 450 450 ASN ASN A . n A 1 451 ILE 451 451 451 ILE ILE A . n A 1 452 PRO 452 452 452 PRO PRO A . n A 1 453 ASP 453 453 453 ASP ASP A . n A 1 454 ILE 454 454 454 ILE ILE A . n A 1 455 ASN 455 455 455 ASN ASN A . n A 1 456 LYS 456 456 456 LYS LYS A . n A 1 457 GLU 457 457 457 GLU GLU A . n A 1 458 ASP 458 458 458 ASP ASP A . n A 1 459 ARG 459 459 459 ARG ARG A . n A 1 460 HIS 460 460 460 HIS HIS A . n A 1 461 ILE 461 461 461 ILE ILE A . n A 1 462 ALA 462 462 462 ALA ALA A . n A 1 463 LYS 463 463 463 LYS LYS A . n A 1 464 ALA 464 464 464 ALA ALA A . n A 1 465 ILE 465 465 465 ILE ILE A . n A 1 466 ASN 466 466 466 ASN ASN A . n A 1 467 PHE 467 467 467 PHE PHE A . n A 1 468 GLY 468 468 468 GLY GLY A . n A 1 469 LEU 469 469 469 LEU LEU A . n A 1 470 ILE 470 470 470 ILE ILE A . n A 1 471 TYR 471 471 471 TYR TYR A . n A 1 472 GLY 472 472 472 GLY GLY A . n A 1 473 MET 473 473 473 MET MET A . n A 1 474 ASN 474 474 474 ASN ASN A . n A 1 475 TYR 475 475 475 TYR TYR A . n A 1 476 VAL 476 476 476 VAL VAL A . n A 1 477 ASN 477 477 477 ASN ASN A . n A 1 478 LEU 478 478 478 LEU LEU A . n A 1 479 LYS 479 479 479 LYS LYS A . n A 1 480 ASN 480 480 480 ASN ASN A . n A 1 481 TYR 481 481 481 TYR TYR A . n A 1 482 ALA 482 482 482 ALA ALA A . n A 1 483 ASN 483 483 483 ASN ASN A . n A 1 484 THR 484 484 484 THR THR A . n A 1 485 TYR 485 485 485 TYR TYR A . n A 1 486 TYR 486 486 486 TYR TYR A . n A 1 487 GLY 487 487 487 GLY GLY A . n A 1 488 LEU 488 488 488 LEU LEU A . n A 1 489 ASN 489 489 489 ASN ASN A . n A 1 490 MET 490 490 490 MET MET A . n A 1 491 SER 491 491 491 SER SER A . n A 1 492 LEU 492 492 492 LEU LEU A . n A 1 493 ASP 493 493 493 ASP ASP A . n A 1 494 GLN 494 494 494 GLN GLN A . n A 1 495 CYS 495 495 495 CYS CYS A . n A 1 496 LEU 496 496 496 LEU LEU A . n A 1 497 TYR 497 497 497 TYR TYR A . n A 1 498 PHE 498 498 498 PHE PHE A . n A 1 499 TYR 499 499 499 TYR TYR A . n A 1 500 ASN 500 500 500 ASN ASN A . n A 1 501 SER 501 501 501 SER SER A . n A 1 502 PHE 502 502 ? ? ? A . n A 1 503 PHE 503 503 ? ? ? A . n A 1 504 GLU 504 504 ? ? ? A . n A 1 505 HIS 505 505 ? ? ? A . n A 1 506 TYR 506 506 ? ? ? A . n A 1 507 LYS 507 507 507 LYS LYS A . n A 1 508 GLY 508 508 508 GLY GLY A . n A 1 509 ILE 509 509 509 ILE ILE A . n A 1 510 TYR 510 510 510 TYR TYR A . n A 1 511 LYS 511 511 511 LYS LYS A . n A 1 512 TRP 512 512 512 TRP TRP A . n A 1 513 HIS 513 513 513 HIS HIS A . n A 1 514 ASN 514 514 514 ASN ASN A . n A 1 515 GLN 515 515 515 GLN GLN A . n A 1 516 VAL 516 516 516 VAL VAL A . n A 1 517 LYS 517 517 517 LYS LYS A . n A 1 518 GLN 518 518 518 GLN GLN A . n A 1 519 LYS 519 519 519 LYS LYS A . n A 1 520 ARG 520 520 520 ARG ARG A . n A 1 521 ALA 521 521 521 ALA ALA A . n A 1 522 LEU 522 522 522 LEU LEU A . n A 1 523 GLN 523 523 523 GLN GLN A . n A 1 524 TYR 524 524 524 TYR TYR A . n A 1 525 SER 525 525 525 SER SER A . n A 1 526 THR 526 526 526 THR THR A . n A 1 527 LEU 527 527 527 LEU LEU A . n A 1 528 SER 528 528 528 SER SER A . n A 1 529 ASN 529 529 529 ASN ASN A . n A 1 530 ARG 530 530 530 ARG ARG A . n A 1 531 LYS 531 531 531 LYS LYS A . n A 1 532 VAL 532 532 532 VAL VAL A . n A 1 533 ILE 533 533 533 ILE ILE A . n A 1 534 PHE 534 534 534 PHE PHE A . n A 1 535 PRO 535 535 535 PRO PRO A . n A 1 536 TYR 536 536 536 TYR TYR A . n A 1 537 PHE 537 537 537 PHE PHE A . n A 1 538 SER 538 538 538 SER SER A . n A 1 539 PHE 539 539 539 PHE PHE A . n A 1 540 THR 540 540 540 THR THR A . n A 1 541 LYS 541 541 541 LYS LYS A . n A 1 542 ALA 542 542 542 ALA ALA A . n A 1 543 LEU 543 543 543 LEU LEU A . n A 1 544 ASN 544 544 544 ASN ASN A . n A 1 545 TYR 545 545 545 TYR TYR A . n A 1 546 PRO 546 546 546 PRO PRO A . n A 1 547 VAL 547 547 547 VAL VAL A . n A 1 548 GLN 548 548 548 GLN GLN A . n A 1 549 GLY 549 549 549 GLY GLY A . n A 1 550 THR 550 550 550 THR THR A . n A 1 551 CYS 551 551 551 CYS CYS A . n A 1 552 ALA 552 552 552 ALA ALA A . n A 1 553 ASP 553 553 553 ASP ASP A . n A 1 554 ILE 554 554 554 ILE ILE A . n A 1 555 LEU 555 555 555 LEU LEU A . n A 1 556 LYS 556 556 556 LYS LYS A . n A 1 557 LEU 557 557 557 LEU LEU A . n A 1 558 ALA 558 558 558 ALA ALA A . n A 1 559 LEU 559 559 559 LEU LEU A . n A 1 560 VAL 560 560 560 VAL VAL A . n A 1 561 ASP 561 561 561 ASP ASP A . n A 1 562 LEU 562 562 562 LEU LEU A . n A 1 563 TYR 563 563 563 TYR TYR A . n A 1 564 ASP 564 564 564 ASP ASP A . n A 1 565 ASN 565 565 565 ASN ASN A . n A 1 566 LEU 566 566 566 LEU LEU A . n A 1 567 LYS 567 567 567 LYS LYS A . n A 1 568 ASP 568 568 568 ASP ASP A . n A 1 569 ILE 569 569 569 ILE ILE A . n A 1 570 ASN 570 570 570 ASN ASN A . n A 1 571 GLY 571 571 571 GLY GLY A . n A 1 572 LYS 572 572 572 LYS LYS A . n A 1 573 ILE 573 573 573 ILE ILE A . n A 1 574 ILE 574 574 574 ILE ILE A . n A 1 575 LEU 575 575 575 LEU LEU A . n A 1 576 CYS 576 576 576 CYS CYS A . n A 1 577 VAL 577 577 577 VAL VAL A . n A 1 578 HIS 578 578 578 HIS HIS A . n A 1 579 ASP 579 579 579 ASP ASP A . n A 1 580 GLU 580 580 580 GLU GLU A . n A 1 581 ILE 581 581 581 ILE ILE A . n A 1 582 ILE 582 582 582 ILE ILE A . n A 1 583 ILE 583 583 583 ILE ILE A . n A 1 584 GLU 584 584 584 GLU GLU A . n A 1 585 VAL 585 585 585 VAL VAL A . n A 1 586 ASN 586 586 586 ASN ASN A . n A 1 587 LYS 587 587 587 LYS LYS A . n A 1 588 LYS 588 588 588 LYS LYS A . n A 1 589 PHE 589 589 589 PHE PHE A . n A 1 590 GLN 590 590 590 GLN GLN A . n A 1 591 GLU 591 591 591 GLU GLU A . n A 1 592 GLU 592 592 592 GLU GLU A . n A 1 593 ALA 593 593 593 ALA ALA A . n A 1 594 LEU 594 594 594 LEU LEU A . n A 1 595 LYS 595 595 595 LYS LYS A . n A 1 596 ILE 596 596 596 ILE ILE A . n A 1 597 LEU 597 597 597 LEU LEU A . n A 1 598 VAL 598 598 598 VAL VAL A . n A 1 599 GLN 599 599 599 GLN GLN A . n A 1 600 SER 600 600 600 SER SER A . n A 1 601 MET 601 601 601 MET MET A . n A 1 602 GLU 602 602 602 GLU GLU A . n A 1 603 ASN 603 603 603 ASN ASN A . n A 1 604 SER 604 604 604 SER SER A . n A 1 605 ALA 605 605 605 ALA ALA A . n A 1 606 SER 606 606 606 SER SER A . n A 1 607 TYR 607 607 607 TYR TYR A . n A 1 608 PHE 608 608 608 PHE PHE A . n A 1 609 LEU 609 609 609 LEU LEU A . n A 1 610 LYS 610 610 610 LYS LYS A . n A 1 611 LYS 611 611 611 LYS LYS A . n A 1 612 VAL 612 612 612 VAL VAL A . n A 1 613 LYS 613 613 613 LYS LYS A . n A 1 614 CYS 614 614 614 CYS CYS A . n A 1 615 GLU 615 615 615 GLU GLU A . n A 1 616 VAL 616 616 616 VAL VAL A . n A 1 617 SER 617 617 617 SER SER A . n A 1 618 VAL 618 618 618 VAL VAL A . n A 1 619 LYS 619 619 619 LYS LYS A . n A 1 620 ILE 620 620 620 ILE ILE A . n A 1 621 ALA 621 621 621 ALA ALA A . n A 1 622 GLU 622 622 622 GLU GLU A . n A 1 623 ASN 623 623 623 ASN ASN A . n A 1 624 TRP 624 624 624 TRP TRP A . n A 1 625 GLY 625 625 625 GLY GLY A . n A 1 626 SER 626 626 626 SER SER A . n A 1 627 LYS 627 627 627 LYS LYS A . n A 1 628 ASP 628 628 628 ASP ASP A . n B 2 1 DG 1 1 ? ? ? E . n B 2 2 DC 2 2 ? ? ? E . n B 2 3 DA 3 3 ? ? ? E . n B 2 4 DG 4 4 ? ? ? E . n B 2 5 DT 5 5 ? ? ? E . n B 2 6 DC 6 6 ? ? ? E . n B 2 7 DA 7 7 ? ? ? E . n B 2 8 DG 8 8 ? ? ? E . n B 2 9 DC 9 9 9 DC DC E . n B 2 10 DT 10 10 10 DT DT E . n B 2 11 DC 11 11 11 DC DC E . n B 2 12 DT 12 12 12 DT DT E . n B 2 13 DA 13 13 13 DA DA E . n B 2 14 DC 14 14 14 DC DC E . n B 2 15 DG 15 15 15 DG DG E . n B 2 16 DG 16 16 16 DG DG E . n B 2 17 DA 17 17 17 DA DA E . n B 2 18 DT 18 18 18 DT DT E . n B 2 19 DG 19 19 19 DG DG E . n B 2 20 DC 20 20 20 DC DC E . n B 2 21 DC 21 21 21 DC DC E . n B 2 22 DT 22 22 22 DT DT E . n B 2 23 DC 23 23 23 DC DC E . n B 2 24 DA 24 24 24 DA DA E . n B 2 25 DC 25 25 25 DC DC E . n B 2 26 DA 26 26 26 DA DA E . n B 2 27 DG 27 27 27 DG DG E . n B 2 28 DC 28 28 ? ? ? E . n B 2 29 DA 29 29 ? ? ? E . n C 3 1 DT 1 1 ? ? ? F . n C 3 2 DA 2 2 2 DA DA F . n C 3 3 DC 3 3 3 DC DC F . n C 3 4 DT 4 4 4 DT DT F . n C 3 5 DG 5 5 5 DG DG F . n C 3 6 DT 6 6 6 DT DT F . n C 3 7 DG 7 7 7 DG DG F . n C 3 8 DA 8 8 8 DA DA F . n C 3 9 DG 9 9 9 DG DG F . n C 3 10 DG 10 10 10 DG DG F . n C 3 11 DC 11 11 11 DC DC F . n C 3 12 DA 12 12 12 DA DA F . n C 3 13 DT 13 13 13 DT DT F . n C 3 14 DC 14 14 14 DC DC F . n C 3 15 DC 15 15 15 DC DC F . n C 3 16 DG 16 16 16 DG DG F . n C 3 17 DT 17 17 17 DT DT F . n C 3 18 DA 18 18 18 DA DA F . n C 3 19 DG 19 19 19 DG DG F . n C 3 20 2DA 20 20 20 2DA 2DA F . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 F DA 2 ? P ? C DA 2 P 2 1 Y 1 F DA 2 ? OP1 ? C DA 2 OP1 3 1 Y 1 F DA 2 ? OP2 ? C DA 2 OP2 4 1 Y 1 F DA 2 ? "O5'" ? C DA 2 "O5'" 5 1 Y 1 F DA 2 ? "C5'" ? C DA 2 "C5'" 6 1 Y 1 F DA 2 ? "C4'" ? C DA 2 "C4'" 7 1 Y 1 F DA 2 ? "O4'" ? C DA 2 "O4'" 8 1 Y 1 F DA 2 ? "C3'" ? C DA 2 "C3'" 9 1 Y 1 F DA 2 ? "C2'" ? C DA 2 "C2'" 10 1 Y 1 F DA 2 ? "C1'" ? C DA 2 "C1'" 11 1 Y 1 F DA 2 ? N9 ? C DA 2 N9 12 1 Y 1 F DA 2 ? C8 ? C DA 2 C8 13 1 Y 1 F DA 2 ? N7 ? C DA 2 N7 14 1 Y 1 F DA 2 ? C5 ? C DA 2 C5 15 1 Y 1 F DA 2 ? C6 ? C DA 2 C6 16 1 Y 1 F DA 2 ? N6 ? C DA 2 N6 17 1 Y 1 F DA 2 ? N1 ? C DA 2 N1 18 1 Y 1 F DA 2 ? C2 ? C DA 2 C2 19 1 Y 1 F DA 2 ? N3 ? C DA 2 N3 20 1 Y 1 F DA 2 ? C4 ? C DA 2 C4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9DG1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9DG1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9DG1 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9DG1 _struct.title 'Structure of Plasmodium falciparum apicoplast DNA polymerase in complex with DNA (exo-minus)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9DG1 _struct_keywords.text 'DNA polymerase, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA complex' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP Q8ILY1_PLAF7 Q8ILY1 ? 1 ;DEITKKYIKDNIINVDDNIIKKKDIFKLKNENNEITECAFEYFESKKKFDDDIESRFFIINDNNYNENINLIYKDIKYCG LDIETTGLEVFDENIRLIQIAVENYPVIIYDMFNINKKDILDGLRKVLENKNIIKIIQNGKFDAKFLLHNNFKIENIFDT YIASKLLDKNKNMYGFKLNNIVEKYLNVILDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKEEIKKENLHIVND IENKCILPICDMELNGIKVDLENLQKSTNEILNELNIEKDNLKKKLKDENINVNSQQQVLKALQKNNVRDISNKLIENTS DSNLKNFLNHEEIISLRNYRRLYKLYSAFYLKLPLHINTKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQKNIREIFIP NDNNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKNIPDINKEDRHIAKAINFGLIYGMNYVNLKN YANTYYGLNMSLDQCLYFYNSFFEHYKGIYKWHNQVKQKRALQYSTLSNRKVIFPYFSFTKALNYPVQGTCADILKLALV DLYDNLKDINGKIILCVHDEIIIEVNKKFQEEALKILVQSMENSASYFLKKVKCEVSVKIAENWGSKD ; 1389 2 PDB 9DG1 9DG1 ? 2 ? 1 3 PDB 9DG1 9DG1 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9DG1 A 1 ? 628 ? Q8ILY1 1389 ? 2016 ? 1 628 2 2 9DG1 E 1 ? 29 ? 9DG1 1 ? 29 ? 1 29 3 3 9DG1 F 1 ? 20 ? 9DG1 1 ? 20 ? 1 20 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9DG1 ASN A 82 ? UNP Q8ILY1 ASP 1470 'engineered mutation' 82 1 1 9DG1 GLN A 84 ? UNP Q8ILY1 GLU 1472 'engineered mutation' 84 2 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 66 ? LYS A 74 ? ASN A 66 LYS A 74 5 ? 9 HELX_P HELX_P2 AA2 PHE A 113 ? ILE A 115 ? PHE A 113 ILE A 115 5 ? 3 HELX_P HELX_P3 AA3 LYS A 118 ? ASN A 130 ? LYS A 118 ASN A 130 1 ? 13 HELX_P HELX_P4 AA4 ASN A 139 ? ASN A 150 ? ASN A 139 ASN A 150 1 ? 12 HELX_P HELX_P5 AA5 THR A 160 ? LYS A 169 ? THR A 160 LYS A 169 1 ? 10 HELX_P HELX_P6 AA6 LEU A 209 ? LYS A 232 ? LEU A 209 LYS A 232 1 ? 24 HELX_P HELX_P7 AA7 LEU A 235 ? CYS A 245 ? LEU A 235 CYS A 245 1 ? 11 HELX_P HELX_P8 AA8 CYS A 245 ? GLY A 256 ? CYS A 245 GLY A 256 1 ? 12 HELX_P HELX_P9 AA9 ASP A 260 ? LEU A 286 ? ASP A 260 LEU A 286 1 ? 27 HELX_P HELX_P10 AB1 SER A 295 ? ASN A 307 ? SER A 295 ASN A 307 1 ? 13 HELX_P HELX_P11 AB2 SER A 320 ? LYS A 325 ? SER A 320 LYS A 325 1 ? 6 HELX_P HELX_P12 AB3 ASN A 326 ? LEU A 328 ? ASN A 326 LEU A 328 5 ? 3 HELX_P HELX_P13 AB4 HIS A 330 ? PHE A 349 ? HIS A 330 PHE A 349 1 ? 20 HELX_P HELX_P14 AB5 LYS A 352 ? HIS A 356 ? LYS A 352 HIS A 356 5 ? 5 HELX_P HELX_P15 AB6 GLN A 391 ? GLU A 396 ? GLN A 391 GLU A 396 1 ? 6 HELX_P HELX_P16 AB7 GLN A 413 ? GLU A 421 ? GLN A 413 GLU A 421 1 ? 9 HELX_P HELX_P17 AB8 GLU A 426 ? ASN A 434 ? GLU A 426 ASN A 434 1 ? 9 HELX_P HELX_P18 AB9 ASP A 437 ? LYS A 448 ? ASP A 437 LYS A 448 1 ? 12 HELX_P HELX_P19 AC1 ASN A 450 ? ILE A 454 ? ASN A 450 ILE A 454 5 ? 5 HELX_P HELX_P20 AC2 ASN A 455 ? TYR A 471 ? ASN A 455 TYR A 471 1 ? 17 HELX_P HELX_P21 AC3 ASN A 474 ? GLY A 487 ? ASN A 474 GLY A 487 1 ? 14 HELX_P HELX_P22 AC4 SER A 491 ? SER A 501 ? SER A 491 SER A 501 1 ? 11 HELX_P HELX_P23 AC5 GLY A 508 ? ARG A 520 ? GLY A 508 ARG A 520 1 ? 13 HELX_P HELX_P24 AC6 SER A 538 ? LEU A 566 ? SER A 538 LEU A 566 1 ? 29 HELX_P HELX_P25 AC7 LYS A 567 ? ASN A 570 ? LYS A 567 ASN A 570 5 ? 4 HELX_P HELX_P26 AC8 PHE A 589 ? LEU A 609 ? PHE A 589 LEU A 609 1 ? 21 HELX_P HELX_P27 AC9 ASN A 623 ? ASP A 628 ? ASN A 623 ASP A 628 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C DG 19 "O3'" ? ? ? 1_555 C 2DA 20 P ? ? F DG 19 F 2DA 20 1_555 ? ? ? ? ? ? ? 1.605 ? ? hydrog1 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C 2DA 20 N6 ? ? E DT 10 F 2DA 20 1_555 ? ? ? ? ? ? 'DT-2DA MISPAIR' ? ? ? hydrog2 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 19 N1 ? ? E DC 11 F DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 19 O6 ? ? E DC 11 F DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 19 N2 ? ? E DC 11 F DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 18 N1 ? ? E DT 12 F DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 18 N6 ? ? E DT 12 F DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 13 N1 ? ? ? 1_555 C DT 17 N3 ? ? E DA 13 F DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DA 13 N6 ? ? ? 1_555 C DT 17 O4 ? ? E DA 13 F DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 14 N3 ? ? ? 1_555 C DG 16 N1 ? ? E DC 14 F DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 14 N4 ? ? ? 1_555 C DG 16 O6 ? ? E DC 14 F DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 14 O2 ? ? ? 1_555 C DG 16 N2 ? ? E DC 14 F DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 15 O6 ? ? ? 1_555 C DC 15 N4 ? ? E DG 15 F DC 15 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog13 hydrog ? ? B DG 15 O6 ? ? ? 1_555 C DG 16 N1 ? ? E DG 15 F DG 16 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog14 hydrog ? ? B DG 16 N1 ? ? ? 1_555 C DC 15 N3 ? ? E DG 16 F DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 16 N2 ? ? ? 1_555 C DC 15 O2 ? ? E DG 16 F DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 16 O6 ? ? ? 1_555 C DC 15 N4 ? ? E DG 16 F DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 17 N6 ? ? ? 1_555 C DT 13 O4 ? ? E DA 17 F DT 13 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog18 hydrog ? ? B DA 17 N6 ? ? ? 1_555 C DC 14 N3 ? ? E DA 17 F DC 14 1_555 ? ? ? ? ? ? 'DA-DC MISPAIR' ? ? ? hydrog19 hydrog ? ? B DT 18 N3 ? ? ? 1_555 C DA 12 N1 ? ? E DT 18 F DA 12 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog20 hydrog ? ? B DG 19 O6 ? ? ? 1_555 C DC 11 N4 ? ? E DG 19 F DC 11 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog21 hydrog ? ? B DC 20 N4 ? ? ? 1_555 C DG 10 O6 ? ? E DC 20 F DG 10 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog22 hydrog ? ? B DC 21 N3 ? ? ? 1_555 C DG 10 N1 ? ? E DC 21 F DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DC 21 N4 ? ? ? 1_555 C DG 10 O6 ? ? E DC 21 F DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DC 21 O2 ? ? ? 1_555 C DG 10 N2 ? ? E DC 21 F DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DT 22 N3 ? ? ? 1_555 C DG 9 O6 ? ? E DT 22 F DG 9 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog26 hydrog ? ? B DT 22 O2 ? ? ? 1_555 C DG 9 N1 ? ? E DT 22 F DG 9 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog27 hydrog ? ? B DC 23 N4 ? ? ? 1_555 C DG 7 O6 ? ? E DC 23 F DG 7 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog28 hydrog ? ? B DC 23 N3 ? ? ? 1_555 C DA 8 N6 ? ? E DC 23 F DA 8 1_555 ? ? ? ? ? ? 'DC-DA MISPAIR' ? ? ? hydrog29 hydrog ? ? B DA 24 N1 ? ? ? 1_555 C DT 6 N3 ? ? E DA 24 F DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DA 24 N6 ? ? ? 1_555 C DT 6 O4 ? ? E DA 24 F DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DC 25 N3 ? ? ? 1_555 C DT 6 N3 ? ? E DC 25 F DT 6 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog32 hydrog ? ? B DC 25 N4 ? ? ? 1_555 C DT 6 O4 ? ? E DC 25 F DT 6 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog33 hydrog ? ? B DA 26 N6 ? ? ? 1_555 C DT 4 O4 ? ? E DA 26 F DT 4 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog34 hydrog ? ? B DA 26 N1 ? ? ? 1_555 C DG 5 N1 ? ? E DA 26 F DG 5 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog35 hydrog ? ? B DA 26 N6 ? ? ? 1_555 C DG 5 O6 ? ? E DA 26 F DG 5 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog36 hydrog ? ? B DG 27 N1 ? ? ? 1_555 C DT 4 O2 ? ? E DG 27 F DT 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog37 hydrog ? ? B DG 27 O6 ? ? ? 1_555 C DT 4 N3 ? ? E DG 27 F DT 4 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 3 ? AA3 ? 2 ? AA4 ? 4 ? AA5 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 57 ? ILE A 60 ? PHE A 57 ILE A 60 AA1 2 VAL A 107 ? ASP A 111 ? VAL A 107 ASP A 111 AA1 3 ILE A 95 ? ALA A 101 ? ILE A 95 ALA A 101 AA1 4 TYR A 78 ? THR A 85 ? TYR A 78 THR A 85 AA1 5 ILE A 134 ? ILE A 137 ? ILE A 134 ILE A 137 AA1 6 ILE A 157 ? ASP A 159 ? ILE A 157 ASP A 159 AA2 1 LYS A 363 ? ILE A 364 ? LYS A 363 ILE A 364 AA2 2 ILE A 257 ? VAL A 259 ? ILE A 257 VAL A 259 AA2 3 PHE A 398 ? ILE A 399 ? PHE A 398 ILE A 399 AA3 1 THR A 367 ? ASN A 369 ? THR A 367 ASN A 369 AA3 2 SER A 379 ? GLU A 381 ? SER A 379 GLU A 381 AA4 1 LYS A 572 ? VAL A 577 ? LYS A 572 VAL A 577 AA4 2 GLU A 580 ? ASN A 586 ? GLU A 580 ASN A 586 AA4 3 ASN A 404 ? PHE A 411 ? ASN A 404 PHE A 411 AA4 4 VAL A 616 ? ALA A 621 ? VAL A 616 ALA A 621 AA5 1 GLN A 523 ? SER A 525 ? GLN A 523 SER A 525 AA5 2 LYS A 531 ? ILE A 533 ? LYS A 531 ILE A 533 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 58 ? N PHE A 58 O VAL A 107 ? O VAL A 107 AA1 2 3 O ILE A 108 ? O ILE A 108 N ILE A 100 ? N ILE A 100 AA1 3 4 O GLN A 99 ? O GLN A 99 N ASN A 82 ? N ASN A 82 AA1 4 5 N LEU A 81 ? N LEU A 81 O ILE A 136 ? O ILE A 136 AA1 5 6 N ILE A 137 ? N ILE A 137 O PHE A 158 ? O PHE A 158 AA2 1 2 O ILE A 364 ? O ILE A 364 N ILE A 257 ? N ILE A 257 AA2 2 3 N LYS A 258 ? N LYS A 258 O ILE A 399 ? O ILE A 399 AA3 1 2 N THR A 367 ? N THR A 367 O GLU A 381 ? O GLU A 381 AA4 1 2 N VAL A 577 ? N VAL A 577 O GLU A 580 ? O GLU A 580 AA4 2 3 O ILE A 581 ? O ILE A 581 N ALA A 409 ? N ALA A 409 AA4 3 4 N PHE A 406 ? N PHE A 406 O ALA A 621 ? O ALA A 621 AA5 1 2 N TYR A 524 ? N TYR A 524 O VAL A 532 ? O VAL A 532 # _pdbx_entry_details.entry_id 9DG1 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" F DA 18 ? ? "O3'" F DA 18 ? ? P F DG 19 ? ? 111.48 119.70 -8.22 1.20 Y 2 1 "C3'" F DG 19 ? ? "O3'" F DG 19 ? ? P F 2DA 20 ? ? 109.36 119.70 -10.34 1.20 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 139 ? ? 67.15 67.35 2 1 ASN A 156 ? ? 75.35 94.95 3 1 ILE A 230 ? ? -72.19 -108.37 4 1 ASN A 234 ? ? 61.91 -37.93 5 1 HIS A 236 ? ? -26.94 -61.85 6 1 ASP A 310 ? ? -79.80 -168.50 7 1 PHE A 349 ? ? -124.62 -68.09 8 1 THR A 359 ? ? -125.66 -58.43 9 1 LYS A 360 ? ? -49.56 -16.20 10 1 HIS A 578 ? ? 51.03 -119.83 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9DG1 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9DG1 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 5.2 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 270582 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.6 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Plasmodium falciparum apicoplast DNA polymerase-DNA binary complex' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2, 3' # _em_imaging.entry_id 9DG1 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 700 _em_imaging.nominal_defocus_max 3000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 9DG1 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 295 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9DG1 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 1 ? A ASP 1 2 1 Y 1 A GLU 2 ? A GLU 2 3 1 Y 1 A ILE 3 ? A ILE 3 4 1 Y 1 A THR 4 ? A THR 4 5 1 Y 1 A LYS 5 ? A LYS 5 6 1 Y 1 A LYS 6 ? A LYS 6 7 1 Y 1 A TYR 7 ? A TYR 7 8 1 Y 1 A ILE 8 ? A ILE 8 9 1 Y 1 A LYS 9 ? A LYS 9 10 1 Y 1 A ASP 10 ? A ASP 10 11 1 Y 1 A ASN 11 ? A ASN 11 12 1 Y 1 A ILE 12 ? A ILE 12 13 1 Y 1 A ILE 13 ? A ILE 13 14 1 Y 1 A ASN 14 ? A ASN 14 15 1 Y 1 A VAL 15 ? A VAL 15 16 1 Y 1 A ASP 16 ? A ASP 16 17 1 Y 1 A ASP 17 ? A ASP 17 18 1 Y 1 A ASN 18 ? A ASN 18 19 1 Y 1 A ILE 19 ? A ILE 19 20 1 Y 1 A ILE 20 ? A ILE 20 21 1 Y 1 A LYS 21 ? A LYS 21 22 1 Y 1 A LYS 22 ? A LYS 22 23 1 Y 1 A LYS 23 ? A LYS 23 24 1 Y 1 A ASP 24 ? A ASP 24 25 1 Y 1 A ILE 25 ? A ILE 25 26 1 Y 1 A PHE 26 ? A PHE 26 27 1 Y 1 A LYS 27 ? A LYS 27 28 1 Y 1 A LEU 28 ? A LEU 28 29 1 Y 1 A LYS 29 ? A LYS 29 30 1 Y 1 A ASN 30 ? A ASN 30 31 1 Y 1 A GLU 31 ? A GLU 31 32 1 Y 1 A ASN 32 ? A ASN 32 33 1 Y 1 A ASN 33 ? A ASN 33 34 1 Y 1 A GLU 34 ? A GLU 34 35 1 Y 1 A ILE 35 ? A ILE 35 36 1 Y 1 A THR 36 ? A THR 36 37 1 Y 1 A GLU 37 ? A GLU 37 38 1 Y 1 A CYS 38 ? A CYS 38 39 1 Y 1 A ALA 39 ? A ALA 39 40 1 Y 1 A PHE 40 ? A PHE 40 41 1 Y 1 A GLU 41 ? A GLU 41 42 1 Y 1 A TYR 42 ? A TYR 42 43 1 Y 1 A PHE 43 ? A PHE 43 44 1 Y 1 A GLU 44 ? A GLU 44 45 1 Y 1 A SER 45 ? A SER 45 46 1 Y 1 A LYS 46 ? A LYS 46 47 1 Y 1 A LYS 47 ? A LYS 47 48 1 Y 1 A LYS 48 ? A LYS 48 49 1 Y 1 A PHE 49 ? A PHE 49 50 1 Y 1 A TYR 174 ? A TYR 174 51 1 Y 1 A GLY 175 ? A GLY 175 52 1 Y 1 A PHE 176 ? A PHE 176 53 1 Y 1 A LYS 177 ? A LYS 177 54 1 Y 1 A LEU 178 ? A LEU 178 55 1 Y 1 A ASN 179 ? A ASN 179 56 1 Y 1 A ASN 180 ? A ASN 180 57 1 Y 1 A ILE 181 ? A ILE 181 58 1 Y 1 A VAL 182 ? A VAL 182 59 1 Y 1 A GLU 183 ? A GLU 183 60 1 Y 1 A LYS 184 ? A LYS 184 61 1 Y 1 A TYR 185 ? A TYR 185 62 1 Y 1 A LEU 186 ? A LEU 186 63 1 Y 1 A ASN 187 ? A ASN 187 64 1 Y 1 A VAL 188 ? A VAL 188 65 1 Y 1 A ILE 189 ? A ILE 189 66 1 Y 1 A LEU 190 ? A LEU 190 67 1 Y 1 A ASP 191 ? A ASP 191 68 1 Y 1 A LYS 192 ? A LYS 192 69 1 Y 1 A GLN 193 ? A GLN 193 70 1 Y 1 A GLN 194 ? A GLN 194 71 1 Y 1 A GLN 195 ? A GLN 195 72 1 Y 1 A ASN 196 ? A ASN 196 73 1 Y 1 A SER 197 ? A SER 197 74 1 Y 1 A VAL 198 ? A VAL 198 75 1 Y 1 A TRP 199 ? A TRP 199 76 1 Y 1 A ASN 200 ? A ASN 200 77 1 Y 1 A ASN 201 ? A ASN 201 78 1 Y 1 A SER 202 ? A SER 202 79 1 Y 1 A LEU 203 ? A LEU 203 80 1 Y 1 A LEU 204 ? A LEU 204 81 1 Y 1 A ASN 205 ? A ASN 205 82 1 Y 1 A ASN 206 ? A ASN 206 83 1 Y 1 A ASN 207 ? A ASN 207 84 1 Y 1 A PRO 383 ? A PRO 383 85 1 Y 1 A ASN 384 ? A ASN 384 86 1 Y 1 A ILE 422 ? A ILE 422 87 1 Y 1 A THR 423 ? A THR 423 88 1 Y 1 A ASN 424 ? A ASN 424 89 1 Y 1 A PHE 502 ? A PHE 502 90 1 Y 1 A PHE 503 ? A PHE 503 91 1 Y 1 A GLU 504 ? A GLU 504 92 1 Y 1 A HIS 505 ? A HIS 505 93 1 Y 1 A TYR 506 ? A TYR 506 94 1 Y 1 E DG 1 ? B DG 1 95 1 Y 1 E DC 2 ? B DC 2 96 1 Y 1 E DA 3 ? B DA 3 97 1 Y 1 E DG 4 ? B DG 4 98 1 Y 1 E DT 5 ? B DT 5 99 1 Y 1 E DC 6 ? B DC 6 100 1 Y 1 E DA 7 ? B DA 7 101 1 Y 1 E DG 8 ? B DG 8 102 1 Y 1 E DC 28 ? B DC 28 103 1 Y 1 E DA 29 ? B DA 29 104 1 Y 1 F DT 1 ? C DT 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2DA P P N N 1 2DA OP1 O N N 2 2DA OP2 O N N 3 2DA OP3 O N N 4 2DA "O5'" O N N 5 2DA "C5'" C N N 6 2DA "C4'" C N S 7 2DA "O4'" O N N 8 2DA "C3'" C N N 9 2DA "C2'" C N N 10 2DA "C1'" C N R 11 2DA N9 N Y N 12 2DA C8 C Y N 13 2DA N7 N Y N 14 2DA C5 C Y N 15 2DA C6 C Y N 16 2DA N6 N N N 17 2DA N1 N Y N 18 2DA C2 C Y N 19 2DA N3 N Y N 20 2DA C4 C Y N 21 2DA HOP2 H N N 22 2DA HOP3 H N N 23 2DA "H5'" H N N 24 2DA "H5''" H N N 25 2DA "H4'" H N N 26 2DA "H3'1" H N N 27 2DA "H3'2" H N N 28 2DA "H2'" H N N 29 2DA "H2''" H N N 30 2DA "H1'" H N N 31 2DA H8 H N N 32 2DA HN61 H N N 33 2DA HN62 H N N 34 2DA H2 H N N 35 ALA N N N N 36 ALA CA C N S 37 ALA C C N N 38 ALA O O N N 39 ALA CB C N N 40 ALA OXT O N N 41 ALA H H N N 42 ALA H2 H N N 43 ALA HA H N N 44 ALA HB1 H N N 45 ALA HB2 H N N 46 ALA HB3 H N N 47 ALA HXT H N N 48 ARG N N N N 49 ARG CA C N S 50 ARG C C N N 51 ARG O O N N 52 ARG CB C N N 53 ARG CG C N N 54 ARG CD C N N 55 ARG NE N N N 56 ARG CZ C N N 57 ARG NH1 N N N 58 ARG NH2 N N N 59 ARG OXT O N N 60 ARG H H N N 61 ARG H2 H N N 62 ARG HA H N N 63 ARG HB2 H N N 64 ARG HB3 H N N 65 ARG HG2 H N N 66 ARG HG3 H N N 67 ARG HD2 H N N 68 ARG HD3 H N N 69 ARG HE H N N 70 ARG HH11 H N N 71 ARG HH12 H N N 72 ARG HH21 H N N 73 ARG HH22 H N N 74 ARG HXT H N N 75 ASN N N N N 76 ASN CA C N S 77 ASN C C N N 78 ASN O O N N 79 ASN CB C N N 80 ASN CG C N N 81 ASN OD1 O N N 82 ASN ND2 N N N 83 ASN OXT O N N 84 ASN H H N N 85 ASN H2 H N N 86 ASN HA H N N 87 ASN HB2 H N N 88 ASN HB3 H N N 89 ASN HD21 H N N 90 ASN HD22 H N N 91 ASN HXT H N N 92 ASP N N N N 93 ASP CA C N S 94 ASP C C N N 95 ASP O O N N 96 ASP CB C N N 97 ASP CG C N N 98 ASP OD1 O N N 99 ASP OD2 O N N 100 ASP OXT O N N 101 ASP H H N N 102 ASP H2 H N N 103 ASP HA H N N 104 ASP HB2 H N N 105 ASP HB3 H N N 106 ASP HD2 H N N 107 ASP HXT H N N 108 CYS N N N N 109 CYS CA C N R 110 CYS C C N N 111 CYS O O N N 112 CYS CB C N N 113 CYS SG S N N 114 CYS OXT O N N 115 CYS H H N N 116 CYS H2 H N N 117 CYS HA H N N 118 CYS HB2 H N N 119 CYS HB3 H N N 120 CYS HG H N N 121 CYS HXT H N N 122 DA OP3 O N N 123 DA P P N N 124 DA OP1 O N N 125 DA OP2 O N N 126 DA "O5'" O N N 127 DA "C5'" C N N 128 DA "C4'" C N R 129 DA "O4'" O N N 130 DA "C3'" C N S 131 DA "O3'" O N N 132 DA "C2'" C N N 133 DA "C1'" C N R 134 DA N9 N Y N 135 DA C8 C Y N 136 DA N7 N Y N 137 DA C5 C Y N 138 DA C6 C Y N 139 DA N6 N N N 140 DA N1 N Y N 141 DA C2 C Y N 142 DA N3 N Y N 143 DA C4 C Y N 144 DA HOP3 H N N 145 DA HOP2 H N N 146 DA "H5'" H N N 147 DA "H5''" H N N 148 DA "H4'" H N N 149 DA "H3'" H N N 150 DA "HO3'" H N N 151 DA "H2'" H N N 152 DA "H2''" H N N 153 DA "H1'" H N N 154 DA H8 H N N 155 DA H61 H N N 156 DA H62 H N N 157 DA H2 H N N 158 DC OP3 O N N 159 DC P P N N 160 DC OP1 O N N 161 DC OP2 O N N 162 DC "O5'" O N N 163 DC "C5'" C N N 164 DC "C4'" C N R 165 DC "O4'" O N N 166 DC "C3'" C N S 167 DC "O3'" O N N 168 DC "C2'" C N N 169 DC "C1'" C N R 170 DC N1 N N N 171 DC C2 C N N 172 DC O2 O N N 173 DC N3 N N N 174 DC C4 C N N 175 DC N4 N N N 176 DC C5 C N N 177 DC C6 C N N 178 DC HOP3 H N N 179 DC HOP2 H N N 180 DC "H5'" H N N 181 DC "H5''" H N N 182 DC "H4'" H N N 183 DC "H3'" H N N 184 DC "HO3'" H N N 185 DC "H2'" H N N 186 DC "H2''" H N N 187 DC "H1'" H N N 188 DC H41 H N N 189 DC H42 H N N 190 DC H5 H N N 191 DC H6 H N N 192 DG OP3 O N N 193 DG P P N N 194 DG OP1 O N N 195 DG OP2 O N N 196 DG "O5'" O N N 197 DG "C5'" C N N 198 DG "C4'" C N R 199 DG "O4'" O N N 200 DG "C3'" C N S 201 DG "O3'" O N N 202 DG "C2'" C N N 203 DG "C1'" C N R 204 DG N9 N Y N 205 DG C8 C Y N 206 DG N7 N Y N 207 DG C5 C Y N 208 DG C6 C N N 209 DG O6 O N N 210 DG N1 N N N 211 DG C2 C N N 212 DG N2 N N N 213 DG N3 N N N 214 DG C4 C Y N 215 DG HOP3 H N N 216 DG HOP2 H N N 217 DG "H5'" H N N 218 DG "H5''" H N N 219 DG "H4'" H N N 220 DG "H3'" H N N 221 DG "HO3'" H N N 222 DG "H2'" H N N 223 DG "H2''" H N N 224 DG "H1'" H N N 225 DG H8 H N N 226 DG H1 H N N 227 DG H21 H N N 228 DG H22 H N N 229 DT OP3 O N N 230 DT P P N N 231 DT OP1 O N N 232 DT OP2 O N N 233 DT "O5'" O N N 234 DT "C5'" C N N 235 DT "C4'" C N R 236 DT "O4'" O N N 237 DT "C3'" C N S 238 DT "O3'" O N N 239 DT "C2'" C N N 240 DT "C1'" C N R 241 DT N1 N N N 242 DT C2 C N N 243 DT O2 O N N 244 DT N3 N N N 245 DT C4 C N N 246 DT O4 O N N 247 DT C5 C N N 248 DT C7 C N N 249 DT C6 C N N 250 DT HOP3 H N N 251 DT HOP2 H N N 252 DT "H5'" H N N 253 DT "H5''" H N N 254 DT "H4'" H N N 255 DT "H3'" H N N 256 DT "HO3'" H N N 257 DT "H2'" H N N 258 DT "H2''" H N N 259 DT "H1'" H N N 260 DT H3 H N N 261 DT H71 H N N 262 DT H72 H N N 263 DT H73 H N N 264 DT H6 H N N 265 GLN N N N N 266 GLN CA C N S 267 GLN C C N N 268 GLN O O N N 269 GLN CB C N N 270 GLN CG C N N 271 GLN CD C N N 272 GLN OE1 O N N 273 GLN NE2 N N N 274 GLN OXT O N N 275 GLN H H N N 276 GLN H2 H N N 277 GLN HA H N N 278 GLN HB2 H N N 279 GLN HB3 H N N 280 GLN HG2 H N N 281 GLN HG3 H N N 282 GLN HE21 H N N 283 GLN HE22 H N N 284 GLN HXT H N N 285 GLU N N N N 286 GLU CA C N S 287 GLU C C N N 288 GLU O O N N 289 GLU CB C N N 290 GLU CG C N N 291 GLU CD C N N 292 GLU OE1 O N N 293 GLU OE2 O N N 294 GLU OXT O N N 295 GLU H H N N 296 GLU H2 H N N 297 GLU HA H N N 298 GLU HB2 H N N 299 GLU HB3 H N N 300 GLU HG2 H N N 301 GLU HG3 H N N 302 GLU HE2 H N N 303 GLU HXT H N N 304 GLY N N N N 305 GLY CA C N N 306 GLY C C N N 307 GLY O O N N 308 GLY OXT O N N 309 GLY H H N N 310 GLY H2 H N N 311 GLY HA2 H N N 312 GLY HA3 H N N 313 GLY HXT H N N 314 HIS N N N N 315 HIS CA C N S 316 HIS C C N N 317 HIS O O N N 318 HIS CB C N N 319 HIS CG C Y N 320 HIS ND1 N Y N 321 HIS CD2 C Y N 322 HIS CE1 C Y N 323 HIS NE2 N Y N 324 HIS OXT O N N 325 HIS H H N N 326 HIS H2 H N N 327 HIS HA H N N 328 HIS HB2 H N N 329 HIS HB3 H N N 330 HIS HD1 H N N 331 HIS HD2 H N N 332 HIS HE1 H N N 333 HIS HE2 H N N 334 HIS HXT H N N 335 ILE N N N N 336 ILE CA C N S 337 ILE C C N N 338 ILE O O N N 339 ILE CB C N S 340 ILE CG1 C N N 341 ILE CG2 C N N 342 ILE CD1 C N N 343 ILE OXT O N N 344 ILE H H N N 345 ILE H2 H N N 346 ILE HA H N N 347 ILE HB H N N 348 ILE HG12 H N N 349 ILE HG13 H N N 350 ILE HG21 H N N 351 ILE HG22 H N N 352 ILE HG23 H N N 353 ILE HD11 H N N 354 ILE HD12 H N N 355 ILE HD13 H N N 356 ILE HXT H N N 357 LEU N N N N 358 LEU CA C N S 359 LEU C C N N 360 LEU O O N N 361 LEU CB C N N 362 LEU CG C N N 363 LEU CD1 C N N 364 LEU CD2 C N N 365 LEU OXT O N N 366 LEU H H N N 367 LEU H2 H N N 368 LEU HA H N N 369 LEU HB2 H N N 370 LEU HB3 H N N 371 LEU HG H N N 372 LEU HD11 H N N 373 LEU HD12 H N N 374 LEU HD13 H N N 375 LEU HD21 H N N 376 LEU HD22 H N N 377 LEU HD23 H N N 378 LEU HXT H N N 379 LYS N N N N 380 LYS CA C N S 381 LYS C C N N 382 LYS O O N N 383 LYS CB C N N 384 LYS CG C N N 385 LYS CD C N N 386 LYS CE C N N 387 LYS NZ N N N 388 LYS OXT O N N 389 LYS H H N N 390 LYS H2 H N N 391 LYS HA H N N 392 LYS HB2 H N N 393 LYS HB3 H N N 394 LYS HG2 H N N 395 LYS HG3 H N N 396 LYS HD2 H N N 397 LYS HD3 H N N 398 LYS HE2 H N N 399 LYS HE3 H N N 400 LYS HZ1 H N N 401 LYS HZ2 H N N 402 LYS HZ3 H N N 403 LYS HXT H N N 404 MET N N N N 405 MET CA C N S 406 MET C C N N 407 MET O O N N 408 MET CB C N N 409 MET CG C N N 410 MET SD S N N 411 MET CE C N N 412 MET OXT O N N 413 MET H H N N 414 MET H2 H N N 415 MET HA H N N 416 MET HB2 H N N 417 MET HB3 H N N 418 MET HG2 H N N 419 MET HG3 H N N 420 MET HE1 H N N 421 MET HE2 H N N 422 MET HE3 H N N 423 MET HXT H N N 424 PHE N N N N 425 PHE CA C N S 426 PHE C C N N 427 PHE O O N N 428 PHE CB C N N 429 PHE CG C Y N 430 PHE CD1 C Y N 431 PHE CD2 C Y N 432 PHE CE1 C Y N 433 PHE CE2 C Y N 434 PHE CZ C Y N 435 PHE OXT O N N 436 PHE H H N N 437 PHE H2 H N N 438 PHE HA H N N 439 PHE HB2 H N N 440 PHE HB3 H N N 441 PHE HD1 H N N 442 PHE HD2 H N N 443 PHE HE1 H N N 444 PHE HE2 H N N 445 PHE HZ H N N 446 PHE HXT H N N 447 PRO N N N N 448 PRO CA C N S 449 PRO C C N N 450 PRO O O N N 451 PRO CB C N N 452 PRO CG C N N 453 PRO CD C N N 454 PRO OXT O N N 455 PRO H H N N 456 PRO HA H N N 457 PRO HB2 H N N 458 PRO HB3 H N N 459 PRO HG2 H N N 460 PRO HG3 H N N 461 PRO HD2 H N N 462 PRO HD3 H N N 463 PRO HXT H N N 464 SER N N N N 465 SER CA C N S 466 SER C C N N 467 SER O O N N 468 SER CB C N N 469 SER OG O N N 470 SER OXT O N N 471 SER H H N N 472 SER H2 H N N 473 SER HA H N N 474 SER HB2 H N N 475 SER HB3 H N N 476 SER HG H N N 477 SER HXT H N N 478 THR N N N N 479 THR CA C N S 480 THR C C N N 481 THR O O N N 482 THR CB C N R 483 THR OG1 O N N 484 THR CG2 C N N 485 THR OXT O N N 486 THR H H N N 487 THR H2 H N N 488 THR HA H N N 489 THR HB H N N 490 THR HG1 H N N 491 THR HG21 H N N 492 THR HG22 H N N 493 THR HG23 H N N 494 THR HXT H N N 495 TRP N N N N 496 TRP CA C N S 497 TRP C C N N 498 TRP O O N N 499 TRP CB C N N 500 TRP CG C Y N 501 TRP CD1 C Y N 502 TRP CD2 C Y N 503 TRP NE1 N Y N 504 TRP CE2 C Y N 505 TRP CE3 C Y N 506 TRP CZ2 C Y N 507 TRP CZ3 C Y N 508 TRP CH2 C Y N 509 TRP OXT O N N 510 TRP H H N N 511 TRP H2 H N N 512 TRP HA H N N 513 TRP HB2 H N N 514 TRP HB3 H N N 515 TRP HD1 H N N 516 TRP HE1 H N N 517 TRP HE3 H N N 518 TRP HZ2 H N N 519 TRP HZ3 H N N 520 TRP HH2 H N N 521 TRP HXT H N N 522 TYR N N N N 523 TYR CA C N S 524 TYR C C N N 525 TYR O O N N 526 TYR CB C N N 527 TYR CG C Y N 528 TYR CD1 C Y N 529 TYR CD2 C Y N 530 TYR CE1 C Y N 531 TYR CE2 C Y N 532 TYR CZ C Y N 533 TYR OH O N N 534 TYR OXT O N N 535 TYR H H N N 536 TYR H2 H N N 537 TYR HA H N N 538 TYR HB2 H N N 539 TYR HB3 H N N 540 TYR HD1 H N N 541 TYR HD2 H N N 542 TYR HE1 H N N 543 TYR HE2 H N N 544 TYR HH H N N 545 TYR HXT H N N 546 VAL N N N N 547 VAL CA C N S 548 VAL C C N N 549 VAL O O N N 550 VAL CB C N N 551 VAL CG1 C N N 552 VAL CG2 C N N 553 VAL OXT O N N 554 VAL H H N N 555 VAL H2 H N N 556 VAL HA H N N 557 VAL HB H N N 558 VAL HG11 H N N 559 VAL HG12 H N N 560 VAL HG13 H N N 561 VAL HG21 H N N 562 VAL HG22 H N N 563 VAL HG23 H N N 564 VAL HXT H N N 565 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2DA P OP1 doub N N 1 2DA P OP2 sing N N 2 2DA P OP3 sing N N 3 2DA P "O5'" sing N N 4 2DA OP2 HOP2 sing N N 5 2DA OP3 HOP3 sing N N 6 2DA "O5'" "C5'" sing N N 7 2DA "C5'" "C4'" sing N N 8 2DA "C5'" "H5'" sing N N 9 2DA "C5'" "H5''" sing N N 10 2DA "C4'" "O4'" sing N N 11 2DA "C4'" "C3'" sing N N 12 2DA "C4'" "H4'" sing N N 13 2DA "O4'" "C1'" sing N N 14 2DA "C3'" "C2'" sing N N 15 2DA "C3'" "H3'1" sing N N 16 2DA "C3'" "H3'2" sing N N 17 2DA "C2'" "C1'" sing N N 18 2DA "C2'" "H2'" sing N N 19 2DA "C2'" "H2''" sing N N 20 2DA "C1'" N9 sing N N 21 2DA "C1'" "H1'" sing N N 22 2DA N9 C8 sing Y N 23 2DA N9 C4 sing Y N 24 2DA C8 N7 doub Y N 25 2DA C8 H8 sing N N 26 2DA N7 C5 sing Y N 27 2DA C5 C6 sing Y N 28 2DA C5 C4 doub Y N 29 2DA C6 N6 sing N N 30 2DA C6 N1 doub Y N 31 2DA N6 HN61 sing N N 32 2DA N6 HN62 sing N N 33 2DA N1 C2 sing Y N 34 2DA C2 N3 doub Y N 35 2DA C2 H2 sing N N 36 2DA N3 C4 sing Y N 37 ALA N CA sing N N 38 ALA N H sing N N 39 ALA N H2 sing N N 40 ALA CA C sing N N 41 ALA CA CB sing N N 42 ALA CA HA sing N N 43 ALA C O doub N N 44 ALA C OXT sing N N 45 ALA CB HB1 sing N N 46 ALA CB HB2 sing N N 47 ALA CB HB3 sing N N 48 ALA OXT HXT sing N N 49 ARG N CA sing N N 50 ARG N H sing N N 51 ARG N H2 sing N N 52 ARG CA C sing N N 53 ARG CA CB sing N N 54 ARG CA HA sing N N 55 ARG C O doub N N 56 ARG C OXT sing N N 57 ARG CB CG sing N N 58 ARG CB HB2 sing N N 59 ARG CB HB3 sing N N 60 ARG CG CD sing N N 61 ARG CG HG2 sing N N 62 ARG CG HG3 sing N N 63 ARG CD NE sing N N 64 ARG CD HD2 sing N N 65 ARG CD HD3 sing N N 66 ARG NE CZ sing N N 67 ARG NE HE sing N N 68 ARG CZ NH1 sing N N 69 ARG CZ NH2 doub N N 70 ARG NH1 HH11 sing N N 71 ARG NH1 HH12 sing N N 72 ARG NH2 HH21 sing N N 73 ARG NH2 HH22 sing N N 74 ARG OXT HXT sing N N 75 ASN N CA sing N N 76 ASN N H sing N N 77 ASN N H2 sing N N 78 ASN CA C sing N N 79 ASN CA CB sing N N 80 ASN CA HA sing N N 81 ASN C O doub N N 82 ASN C OXT sing N N 83 ASN CB CG sing N N 84 ASN CB HB2 sing N N 85 ASN CB HB3 sing N N 86 ASN CG OD1 doub N N 87 ASN CG ND2 sing N N 88 ASN ND2 HD21 sing N N 89 ASN ND2 HD22 sing N N 90 ASN OXT HXT sing N N 91 ASP N CA sing N N 92 ASP N H sing N N 93 ASP N H2 sing N N 94 ASP CA C sing N N 95 ASP CA CB sing N N 96 ASP CA HA sing N N 97 ASP C O doub N N 98 ASP C OXT sing N N 99 ASP CB CG sing N N 100 ASP CB HB2 sing N N 101 ASP CB HB3 sing N N 102 ASP CG OD1 doub N N 103 ASP CG OD2 sing N N 104 ASP OD2 HD2 sing N N 105 ASP OXT HXT sing N N 106 CYS N CA sing N N 107 CYS N H sing N N 108 CYS N H2 sing N N 109 CYS CA C sing N N 110 CYS CA CB sing N N 111 CYS CA HA sing N N 112 CYS C O doub N N 113 CYS C OXT sing N N 114 CYS CB SG sing N N 115 CYS CB HB2 sing N N 116 CYS CB HB3 sing N N 117 CYS SG HG sing N N 118 CYS OXT HXT sing N N 119 DA OP3 P sing N N 120 DA OP3 HOP3 sing N N 121 DA P OP1 doub N N 122 DA P OP2 sing N N 123 DA P "O5'" sing N N 124 DA OP2 HOP2 sing N N 125 DA "O5'" "C5'" sing N N 126 DA "C5'" "C4'" sing N N 127 DA "C5'" "H5'" sing N N 128 DA "C5'" "H5''" sing N N 129 DA "C4'" "O4'" sing N N 130 DA "C4'" "C3'" sing N N 131 DA "C4'" "H4'" sing N N 132 DA "O4'" "C1'" sing N N 133 DA "C3'" "O3'" sing N N 134 DA "C3'" "C2'" sing N N 135 DA "C3'" "H3'" sing N N 136 DA "O3'" "HO3'" sing N N 137 DA "C2'" "C1'" sing N N 138 DA "C2'" "H2'" sing N N 139 DA "C2'" "H2''" sing N N 140 DA "C1'" N9 sing N N 141 DA "C1'" "H1'" sing N N 142 DA N9 C8 sing Y N 143 DA N9 C4 sing Y N 144 DA C8 N7 doub Y N 145 DA C8 H8 sing N N 146 DA N7 C5 sing Y N 147 DA C5 C6 sing Y N 148 DA C5 C4 doub Y N 149 DA C6 N6 sing N N 150 DA C6 N1 doub Y N 151 DA N6 H61 sing N N 152 DA N6 H62 sing N N 153 DA N1 C2 sing Y N 154 DA C2 N3 doub Y N 155 DA C2 H2 sing N N 156 DA N3 C4 sing Y N 157 DC OP3 P sing N N 158 DC OP3 HOP3 sing N N 159 DC P OP1 doub N N 160 DC P OP2 sing N N 161 DC P "O5'" sing N N 162 DC OP2 HOP2 sing N N 163 DC "O5'" "C5'" sing N N 164 DC "C5'" "C4'" sing N N 165 DC "C5'" "H5'" sing N N 166 DC "C5'" "H5''" sing N N 167 DC "C4'" "O4'" sing N N 168 DC "C4'" "C3'" sing N N 169 DC "C4'" "H4'" sing N N 170 DC "O4'" "C1'" sing N N 171 DC "C3'" "O3'" sing N N 172 DC "C3'" "C2'" sing N N 173 DC "C3'" "H3'" sing N N 174 DC "O3'" "HO3'" sing N N 175 DC "C2'" "C1'" sing N N 176 DC "C2'" "H2'" sing N N 177 DC "C2'" "H2''" sing N N 178 DC "C1'" N1 sing N N 179 DC "C1'" "H1'" sing N N 180 DC N1 C2 sing N N 181 DC N1 C6 sing N N 182 DC C2 O2 doub N N 183 DC C2 N3 sing N N 184 DC N3 C4 doub N N 185 DC C4 N4 sing N N 186 DC C4 C5 sing N N 187 DC N4 H41 sing N N 188 DC N4 H42 sing N N 189 DC C5 C6 doub N N 190 DC C5 H5 sing N N 191 DC C6 H6 sing N N 192 DG OP3 P sing N N 193 DG OP3 HOP3 sing N N 194 DG P OP1 doub N N 195 DG P OP2 sing N N 196 DG P "O5'" sing N N 197 DG OP2 HOP2 sing N N 198 DG "O5'" "C5'" sing N N 199 DG "C5'" "C4'" sing N N 200 DG "C5'" "H5'" sing N N 201 DG "C5'" "H5''" sing N N 202 DG "C4'" "O4'" sing N N 203 DG "C4'" "C3'" sing N N 204 DG "C4'" "H4'" sing N N 205 DG "O4'" "C1'" sing N N 206 DG "C3'" "O3'" sing N N 207 DG "C3'" "C2'" sing N N 208 DG "C3'" "H3'" sing N N 209 DG "O3'" "HO3'" sing N N 210 DG "C2'" "C1'" sing N N 211 DG "C2'" "H2'" sing N N 212 DG "C2'" "H2''" sing N N 213 DG "C1'" N9 sing N N 214 DG "C1'" "H1'" sing N N 215 DG N9 C8 sing Y N 216 DG N9 C4 sing Y N 217 DG C8 N7 doub Y N 218 DG C8 H8 sing N N 219 DG N7 C5 sing Y N 220 DG C5 C6 sing N N 221 DG C5 C4 doub Y N 222 DG C6 O6 doub N N 223 DG C6 N1 sing N N 224 DG N1 C2 sing N N 225 DG N1 H1 sing N N 226 DG C2 N2 sing N N 227 DG C2 N3 doub N N 228 DG N2 H21 sing N N 229 DG N2 H22 sing N N 230 DG N3 C4 sing N N 231 DT OP3 P sing N N 232 DT OP3 HOP3 sing N N 233 DT P OP1 doub N N 234 DT P OP2 sing N N 235 DT P "O5'" sing N N 236 DT OP2 HOP2 sing N N 237 DT "O5'" "C5'" sing N N 238 DT "C5'" "C4'" sing N N 239 DT "C5'" "H5'" sing N N 240 DT "C5'" "H5''" sing N N 241 DT "C4'" "O4'" sing N N 242 DT "C4'" "C3'" sing N N 243 DT "C4'" "H4'" sing N N 244 DT "O4'" "C1'" sing N N 245 DT "C3'" "O3'" sing N N 246 DT "C3'" "C2'" sing N N 247 DT "C3'" "H3'" sing N N 248 DT "O3'" "HO3'" sing N N 249 DT "C2'" "C1'" sing N N 250 DT "C2'" "H2'" sing N N 251 DT "C2'" "H2''" sing N N 252 DT "C1'" N1 sing N N 253 DT "C1'" "H1'" sing N N 254 DT N1 C2 sing N N 255 DT N1 C6 sing N N 256 DT C2 O2 doub N N 257 DT C2 N3 sing N N 258 DT N3 C4 sing N N 259 DT N3 H3 sing N N 260 DT C4 O4 doub N N 261 DT C4 C5 sing N N 262 DT C5 C7 sing N N 263 DT C5 C6 doub N N 264 DT C7 H71 sing N N 265 DT C7 H72 sing N N 266 DT C7 H73 sing N N 267 DT C6 H6 sing N N 268 GLN N CA sing N N 269 GLN N H sing N N 270 GLN N H2 sing N N 271 GLN CA C sing N N 272 GLN CA CB sing N N 273 GLN CA HA sing N N 274 GLN C O doub N N 275 GLN C OXT sing N N 276 GLN CB CG sing N N 277 GLN CB HB2 sing N N 278 GLN CB HB3 sing N N 279 GLN CG CD sing N N 280 GLN CG HG2 sing N N 281 GLN CG HG3 sing N N 282 GLN CD OE1 doub N N 283 GLN CD NE2 sing N N 284 GLN NE2 HE21 sing N N 285 GLN NE2 HE22 sing N N 286 GLN OXT HXT sing N N 287 GLU N CA sing N N 288 GLU N H sing N N 289 GLU N H2 sing N N 290 GLU CA C sing N N 291 GLU CA CB sing N N 292 GLU CA HA sing N N 293 GLU C O doub N N 294 GLU C OXT sing N N 295 GLU CB CG sing N N 296 GLU CB HB2 sing N N 297 GLU CB HB3 sing N N 298 GLU CG CD sing N N 299 GLU CG HG2 sing N N 300 GLU CG HG3 sing N N 301 GLU CD OE1 doub N N 302 GLU CD OE2 sing N N 303 GLU OE2 HE2 sing N N 304 GLU OXT HXT sing N N 305 GLY N CA sing N N 306 GLY N H sing N N 307 GLY N H2 sing N N 308 GLY CA C sing N N 309 GLY CA HA2 sing N N 310 GLY CA HA3 sing N N 311 GLY C O doub N N 312 GLY C OXT sing N N 313 GLY OXT HXT sing N N 314 HIS N CA sing N N 315 HIS N H sing N N 316 HIS N H2 sing N N 317 HIS CA C sing N N 318 HIS CA CB sing N N 319 HIS CA HA sing N N 320 HIS C O doub N N 321 HIS C OXT sing N N 322 HIS CB CG sing N N 323 HIS CB HB2 sing N N 324 HIS CB HB3 sing N N 325 HIS CG ND1 sing Y N 326 HIS CG CD2 doub Y N 327 HIS ND1 CE1 doub Y N 328 HIS ND1 HD1 sing N N 329 HIS CD2 NE2 sing Y N 330 HIS CD2 HD2 sing N N 331 HIS CE1 NE2 sing Y N 332 HIS CE1 HE1 sing N N 333 HIS NE2 HE2 sing N N 334 HIS OXT HXT sing N N 335 ILE N CA sing N N 336 ILE N H sing N N 337 ILE N H2 sing N N 338 ILE CA C sing N N 339 ILE CA CB sing N N 340 ILE CA HA sing N N 341 ILE C O doub N N 342 ILE C OXT sing N N 343 ILE CB CG1 sing N N 344 ILE CB CG2 sing N N 345 ILE CB HB sing N N 346 ILE CG1 CD1 sing N N 347 ILE CG1 HG12 sing N N 348 ILE CG1 HG13 sing N N 349 ILE CG2 HG21 sing N N 350 ILE CG2 HG22 sing N N 351 ILE CG2 HG23 sing N N 352 ILE CD1 HD11 sing N N 353 ILE CD1 HD12 sing N N 354 ILE CD1 HD13 sing N N 355 ILE OXT HXT sing N N 356 LEU N CA sing N N 357 LEU N H sing N N 358 LEU N H2 sing N N 359 LEU CA C sing N N 360 LEU CA CB sing N N 361 LEU CA HA sing N N 362 LEU C O doub N N 363 LEU C OXT sing N N 364 LEU CB CG sing N N 365 LEU CB HB2 sing N N 366 LEU CB HB3 sing N N 367 LEU CG CD1 sing N N 368 LEU CG CD2 sing N N 369 LEU CG HG sing N N 370 LEU CD1 HD11 sing N N 371 LEU CD1 HD12 sing N N 372 LEU CD1 HD13 sing N N 373 LEU CD2 HD21 sing N N 374 LEU CD2 HD22 sing N N 375 LEU CD2 HD23 sing N N 376 LEU OXT HXT sing N N 377 LYS N CA sing N N 378 LYS N H sing N N 379 LYS N H2 sing N N 380 LYS CA C sing N N 381 LYS CA CB sing N N 382 LYS CA HA sing N N 383 LYS C O doub N N 384 LYS C OXT sing N N 385 LYS CB CG sing N N 386 LYS CB HB2 sing N N 387 LYS CB HB3 sing N N 388 LYS CG CD sing N N 389 LYS CG HG2 sing N N 390 LYS CG HG3 sing N N 391 LYS CD CE sing N N 392 LYS CD HD2 sing N N 393 LYS CD HD3 sing N N 394 LYS CE NZ sing N N 395 LYS CE HE2 sing N N 396 LYS CE HE3 sing N N 397 LYS NZ HZ1 sing N N 398 LYS NZ HZ2 sing N N 399 LYS NZ HZ3 sing N N 400 LYS OXT HXT sing N N 401 MET N CA sing N N 402 MET N H sing N N 403 MET N H2 sing N N 404 MET CA C sing N N 405 MET CA CB sing N N 406 MET CA HA sing N N 407 MET C O doub N N 408 MET C OXT sing N N 409 MET CB CG sing N N 410 MET CB HB2 sing N N 411 MET CB HB3 sing N N 412 MET CG SD sing N N 413 MET CG HG2 sing N N 414 MET CG HG3 sing N N 415 MET SD CE sing N N 416 MET CE HE1 sing N N 417 MET CE HE2 sing N N 418 MET CE HE3 sing N N 419 MET OXT HXT sing N N 420 PHE N CA sing N N 421 PHE N H sing N N 422 PHE N H2 sing N N 423 PHE CA C sing N N 424 PHE CA CB sing N N 425 PHE CA HA sing N N 426 PHE C O doub N N 427 PHE C OXT sing N N 428 PHE CB CG sing N N 429 PHE CB HB2 sing N N 430 PHE CB HB3 sing N N 431 PHE CG CD1 doub Y N 432 PHE CG CD2 sing Y N 433 PHE CD1 CE1 sing Y N 434 PHE CD1 HD1 sing N N 435 PHE CD2 CE2 doub Y N 436 PHE CD2 HD2 sing N N 437 PHE CE1 CZ doub Y N 438 PHE CE1 HE1 sing N N 439 PHE CE2 CZ sing Y N 440 PHE CE2 HE2 sing N N 441 PHE CZ HZ sing N N 442 PHE OXT HXT sing N N 443 PRO N CA sing N N 444 PRO N CD sing N N 445 PRO N H sing N N 446 PRO CA C sing N N 447 PRO CA CB sing N N 448 PRO CA HA sing N N 449 PRO C O doub N N 450 PRO C OXT sing N N 451 PRO CB CG sing N N 452 PRO CB HB2 sing N N 453 PRO CB HB3 sing N N 454 PRO CG CD sing N N 455 PRO CG HG2 sing N N 456 PRO CG HG3 sing N N 457 PRO CD HD2 sing N N 458 PRO CD HD3 sing N N 459 PRO OXT HXT sing N N 460 SER N CA sing N N 461 SER N H sing N N 462 SER N H2 sing N N 463 SER CA C sing N N 464 SER CA CB sing N N 465 SER CA HA sing N N 466 SER C O doub N N 467 SER C OXT sing N N 468 SER CB OG sing N N 469 SER CB HB2 sing N N 470 SER CB HB3 sing N N 471 SER OG HG sing N N 472 SER OXT HXT sing N N 473 THR N CA sing N N 474 THR N H sing N N 475 THR N H2 sing N N 476 THR CA C sing N N 477 THR CA CB sing N N 478 THR CA HA sing N N 479 THR C O doub N N 480 THR C OXT sing N N 481 THR CB OG1 sing N N 482 THR CB CG2 sing N N 483 THR CB HB sing N N 484 THR OG1 HG1 sing N N 485 THR CG2 HG21 sing N N 486 THR CG2 HG22 sing N N 487 THR CG2 HG23 sing N N 488 THR OXT HXT sing N N 489 TRP N CA sing N N 490 TRP N H sing N N 491 TRP N H2 sing N N 492 TRP CA C sing N N 493 TRP CA CB sing N N 494 TRP CA HA sing N N 495 TRP C O doub N N 496 TRP C OXT sing N N 497 TRP CB CG sing N N 498 TRP CB HB2 sing N N 499 TRP CB HB3 sing N N 500 TRP CG CD1 doub Y N 501 TRP CG CD2 sing Y N 502 TRP CD1 NE1 sing Y N 503 TRP CD1 HD1 sing N N 504 TRP CD2 CE2 doub Y N 505 TRP CD2 CE3 sing Y N 506 TRP NE1 CE2 sing Y N 507 TRP NE1 HE1 sing N N 508 TRP CE2 CZ2 sing Y N 509 TRP CE3 CZ3 doub Y N 510 TRP CE3 HE3 sing N N 511 TRP CZ2 CH2 doub Y N 512 TRP CZ2 HZ2 sing N N 513 TRP CZ3 CH2 sing Y N 514 TRP CZ3 HZ3 sing N N 515 TRP CH2 HH2 sing N N 516 TRP OXT HXT sing N N 517 TYR N CA sing N N 518 TYR N H sing N N 519 TYR N H2 sing N N 520 TYR CA C sing N N 521 TYR CA CB sing N N 522 TYR CA HA sing N N 523 TYR C O doub N N 524 TYR C OXT sing N N 525 TYR CB CG sing N N 526 TYR CB HB2 sing N N 527 TYR CB HB3 sing N N 528 TYR CG CD1 doub Y N 529 TYR CG CD2 sing Y N 530 TYR CD1 CE1 sing Y N 531 TYR CD1 HD1 sing N N 532 TYR CD2 CE2 doub Y N 533 TYR CD2 HD2 sing N N 534 TYR CE1 CZ doub Y N 535 TYR CE1 HE1 sing N N 536 TYR CE2 CZ sing Y N 537 TYR CE2 HE2 sing N N 538 TYR CZ OH sing N N 539 TYR OH HH sing N N 540 TYR OXT HXT sing N N 541 VAL N CA sing N N 542 VAL N H sing N N 543 VAL N H2 sing N N 544 VAL CA C sing N N 545 VAL CA CB sing N N 546 VAL CA HA sing N N 547 VAL C O doub N N 548 VAL C OXT sing N N 549 VAL CB CG1 sing N N 550 VAL CB CG2 sing N N 551 VAL CB HB sing N N 552 VAL CG1 HG11 sing N N 553 VAL CG1 HG12 sing N N 554 VAL CG1 HG13 sing N N 555 VAL CG2 HG21 sing N N 556 VAL CG2 HG22 sing N N 557 VAL CG2 HG23 sing N N 558 VAL OXT HXT sing N N 559 # _em_admin.current_status REL _em_admin.deposition_date 2024-09-01 _em_admin.deposition_site RCSB _em_admin.entry_id 9DG1 _em_admin.last_update 2024-11-06 _em_admin.map_release_date 2024-11-06 _em_admin.title 'Structure of Plasmodium falciparum apicoplast DNA polymerase in complex with DNA (exo-minus)' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 5833 _em_entity_assembly_naturalsource.organism 'Plasmodium falciparum' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 866768 _em_entity_assembly_recombinant.organism ;Escherichia coli 'BL21-Gold(DE3)pLysS AG' ; _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 7 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 49 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9DG1 'double helix' 9DG1 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DT 10 1_555 C 2DA 20 1_555 1.287 0.011 0.551 -7.574 -18.925 -46.419 1 E_DT10:2DA20_F E 10 ? F 20 ? ? ? 1 B DC 11 1_555 C DG 19 1_555 0.604 -0.605 0.588 -6.814 -22.634 -13.336 2 E_DC11:DG19_F E 11 ? F 19 ? 19 1 1 B DT 12 1_555 C DA 18 1_555 0.476 -0.430 0.483 -9.885 -20.583 -17.111 3 E_DT12:DA18_F E 12 ? F 18 ? 20 1 1 B DA 13 1_555 C DT 17 1_555 -0.811 -0.216 -1.213 -13.965 7.317 -37.967 4 E_DA13:DT17_F E 13 ? F 17 ? 20 1 1 B DC 14 1_555 C DG 16 1_555 -0.790 -0.594 -0.958 5.914 21.488 -18.855 5 E_DC14:DG16_F E 14 ? F 16 ? 19 1 1 B DG 16 1_555 C DC 15 1_555 -0.810 -0.616 1.661 2.197 -16.743 2.407 6 E_DG16:DC15_F E 16 ? F 15 ? 19 1 1 B DA 17 1_555 C DT 13 1_555 -0.820 0.403 -1.329 -8.822 -4.144 -38.730 7 E_DA17:DT13_F E 17 ? F 13 ? ? ? 1 B DT 18 1_555 C DA 12 1_555 -1.039 0.392 -0.717 -6.488 6.413 -43.575 8 E_DT18:DA12_F E 18 ? F 12 ? ? ? 1 B DG 19 1_555 C DC 11 1_555 0.259 0.479 -1.153 -10.485 1.027 -42.643 9 E_DG19:DC11_F E 19 ? F 11 ? ? ? 1 B DC 21 1_555 C DG 10 1_555 1.314 -1.053 1.284 10.374 -15.201 -1.893 10 E_DC21:DG10_F E 21 ? F 10 ? 19 1 1 B DT 22 1_555 C DG 9 1_555 1.715 -0.308 0.066 25.044 -20.847 12.347 11 E_DT22:DG9_F E 22 ? F 9 ? 28 1 1 B DC 23 1_555 C DA 8 1_555 1.023 -0.408 1.393 13.353 -15.714 12.696 12 E_DC23:DA8_F E 23 ? F 8 ? ? 1 1 B DC 25 1_555 C DT 6 1_555 -0.386 -1.168 0.969 -5.057 2.507 12.568 13 E_DC25:DT6_F E 25 ? F 6 ? 18 1 1 B DA 26 1_555 C DT 4 1_555 -1.331 0.054 -1.375 -0.828 -1.159 -24.655 14 E_DA26:DT4_F E 26 ? F 4 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DT 10 1_555 C 2DA 20 1_555 B DC 11 1_555 C DG 19 1_555 0.684 -1.609 2.725 2.672 -0.320 30.122 -3.030 -0.853 2.791 -0.613 -5.128 30.239 1 EE_DT10DC11:DG192DA20_FF E 10 ? F 20 ? E 11 ? F 19 ? 1 B DC 11 1_555 C DG 19 1_555 B DT 12 1_555 C DA 18 1_555 -0.586 -0.910 3.043 3.310 3.051 34.314 -1.958 1.450 2.887 5.144 -5.580 34.599 2 EE_DC11DT12:DA18DG19_FF E 11 ? F 19 ? E 12 ? F 18 ? 1 B DT 12 1_555 C DA 18 1_555 B DA 13 1_555 C DT 17 1_555 -0.913 -0.419 3.279 14.367 9.576 28.788 -2.191 3.781 2.330 17.422 -26.140 33.475 3 EE_DT12DA13:DT17DA18_FF E 12 ? F 18 ? E 13 ? F 17 ? 1 B DA 13 1_555 C DT 17 1_555 B DC 14 1_555 C DG 16 1_555 0.645 -0.569 2.995 -2.972 1.503 29.926 -1.373 -1.790 2.888 2.900 5.734 30.106 4 EE_DA13DC14:DG16DT17_FF E 13 ? F 17 ? E 14 ? F 16 ? 1 B DC 14 1_555 C DG 16 1_555 B DG 16 1_555 C DC 15 1_555 0.152 0.467 4.956 7.769 6.240 55.385 -0.046 0.513 4.956 6.654 -8.284 56.204 5 EE_DC14DG16:DC15DG16_FF E 14 ? F 16 ? E 16 ? F 15 ? 1 B DG 16 1_555 C DC 15 1_555 B DA 17 1_555 C DT 13 1_555 0.402 -0.851 4.816 -0.760 -1.316 55.792 -0.798 -0.494 4.828 -1.406 0.812 55.811 6 EE_DG16DA17:DT13DC15_FF E 16 ? F 15 ? E 17 ? F 13 ? 1 B DA 17 1_555 C DT 13 1_555 B DT 18 1_555 C DA 12 1_555 -0.513 -1.106 3.260 -1.643 -3.635 27.535 -1.409 0.663 3.400 -7.586 3.430 27.817 7 EE_DA17DT18:DA12DT13_FF E 17 ? F 13 ? E 18 ? F 12 ? 1 B DT 18 1_555 C DA 12 1_555 B DG 19 1_555 C DC 11 1_555 0.588 -1.209 3.512 3.270 9.271 40.742 -2.702 -0.467 3.209 13.087 -4.616 41.863 8 EE_DT18DG19:DC11DA12_FF E 18 ? F 12 ? E 19 ? F 11 ? 1 B DG 19 1_555 C DC 11 1_555 B DC 21 1_555 C DG 10 1_555 -0.337 -0.351 4.112 4.049 -9.070 48.745 0.425 0.777 4.073 -10.859 -4.848 49.687 9 EE_DG19DC21:DG10DC11_FF E 19 ? F 11 ? E 21 ? F 10 ? 1 B DC 21 1_555 C DG 10 1_555 B DT 22 1_555 C DG 9 1_555 0.803 0.356 2.742 16.622 3.565 34.330 0.138 0.667 2.845 5.632 -26.261 38.195 10 EE_DC21DT22:DG9DG10_FF E 21 ? F 10 ? E 22 ? F 9 ? 1 B DT 22 1_555 C DG 9 1_555 B DC 23 1_555 C DA 8 1_555 -0.280 0.573 3.640 -4.621 10.089 33.799 -0.751 -0.315 3.662 16.800 7.695 35.523 11 EE_DT22DC23:DA8DG9_FF E 22 ? F 9 ? E 23 ? F 8 ? 1 B DC 23 1_555 C DA 8 1_555 B DC 25 1_555 C DT 6 1_555 0.255 1.771 7.152 6.889 7.132 70.277 0.980 0.309 7.275 6.164 -5.955 70.884 12 EE_DC23DC25:DT6DA8_FF E 23 ? F 8 ? E 25 ? F 6 ? 1 B DC 25 1_555 C DT 6 1_555 B DA 26 1_555 C DT 4 1_555 0.284 1.686 4.788 -1.400 -0.743 50.705 2.045 -0.475 4.756 -0.868 1.635 50.729 13 EE_DC25DA26:DT4DT6_FF E 25 ? F 6 ? E 26 ? F 4 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 1R35GM142722 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9DG1 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_