HEADER TRANSFERASE 02-SEP-24 9DGC TITLE TETRAHYDROPROTOBERBERINE N-METHYLTRANSFERASE E207A MUTANT IN COMPLEX TITLE 2 WITH (S)-RETICULINE AND SAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRAHYDROPROTOBERBERINE N-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.122; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLAUCIUM FLAVUM; SOURCE 3 ORGANISM_COMMON: YELLOW HORNED-POPPY; SOURCE 4 ORGANISM_TAXID: 56853; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METHYLTRANSFERASE, BENZYLISOQUINOLINE ALKALOID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.E.LANG,K.K.S.NG REVDAT 1 17-SEP-25 9DGC 0 JRNL AUTH D.E.LANG,K.K.S.NG,F.REHMAN,J.S.MORRIS,P.J.FACCHINI JRNL TITL THE STEREOSPECIFIC ACTIVITIES OF THE JRNL TITL 2 TETRAHYDROPROTOBERBERINE N-METHYLTRANSFERASE WITH JRNL TITL 3 ALTERNATIVE SUBSTRATES PROVIDE INSIGHT INTO THE CATALYTIC JRNL TITL 4 MECHANISMS OF BENZYLISOQUINOLINE ALKALOID N-METHYLATION. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.146 REMARK 3 FREE R VALUE TEST SET COUNT : 1806 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2415 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2721 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02400 REMARK 3 B22 (A**2) : 0.02400 REMARK 3 B33 (A**2) : -0.07800 REMARK 3 B12 (A**2) : 0.01200 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.116 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2877 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3877 ; 1.650 ; 1.839 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 345 ; 6.046 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 9 ;14.404 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 534 ;13.358 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 419 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2162 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1218 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1965 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 161 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1377 ; 4.362 ; 4.226 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1723 ; 6.047 ; 7.542 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1500 ; 6.797 ; 4.948 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2154 ;10.049 ; 8.735 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE NOT BEEN USED REMARK 4 REMARK 4 9DGC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1000288044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35097 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 39.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.0230 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.45100 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PENTAERYTHRITOL ETHOXYLATE (15/4 REMARK 280 EO/OH), 15 MM AMMONIUM SULFATE, 0.1 M TRIS-CL, 7.5% GLYCEROL, REMARK 280 0.5 MM (S)-RETICULINE, 0.5 MM SAM, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.96267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.48133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.48133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.96267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -27.48133 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -24 REMARK 465 GLY A -23 REMARK 465 SER A -22 REMARK 465 SER A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 GLY A -14 REMARK 465 THR A -13 REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 TYR A -10 REMARK 465 ILE A -9 REMARK 465 THR A -8 REMARK 465 SER A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 LYS A -4 REMARK 465 LYS A -3 REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 TRP A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 ASN A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 VAL A 8 REMARK 465 LYS A 9 REMARK 465 MET A 69 REMARK 465 SER A 70 REMARK 465 GLY A 71 REMARK 465 GLU A 72 REMARK 465 ILE A 73 REMARK 465 ASP A 74 REMARK 465 THR A 75 REMARK 465 MET A 76 REMARK 465 ASN A 77 REMARK 465 GLU A 78 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 98 C13 REN A 402 1.44 REMARK 500 O ASP A 105 NH1 ARG A 292 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE LYS A 358 CE LYS A 358 6554 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 54 CB - CG - CD1 ANGL. DEV. = -10.7 DEGREES REMARK 500 ARG A 292 CG - CD - NE ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG A 292 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 12 124.41 73.41 REMARK 500 ASP A 105 -167.90 -111.33 REMARK 500 CYS A 261 53.65 -152.91 REMARK 500 GLU A 347 -79.29 -122.30 REMARK 500 MET A 349 -159.13 -160.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 41 0.10 SIDE CHAIN REMARK 500 ARG A 292 0.22 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF1 9DGC A 1 358 UNP A0A5S8WF76_GLAFL DBREF2 9DGC A A0A5S8WF76 1 358 SEQADV 9DGC MET A -24 UNP A0A5S8WF7 INITIATING METHIONINE SEQADV 9DGC GLY A -23 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC SER A -22 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC SER A -21 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC HIS A -20 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC HIS A -19 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC HIS A -18 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC HIS A -17 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC HIS A -16 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC HIS A -15 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC GLY A -14 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC THR A -13 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC GLY A -12 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC SER A -11 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC TYR A -10 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC ILE A -9 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC THR A -8 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC SER A -7 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC LEU A -6 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC TYR A -5 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC LYS A -4 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC LYS A -3 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC ALA A -2 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC GLY A -1 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC TRP A 0 UNP A0A5S8WF7 EXPRESSION TAG SEQADV 9DGC ALA A 207 UNP A0A5S8WF7 GLU 207 ENGINEERED MUTATION SEQRES 1 A 383 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLY THR GLY SEQRES 2 A 383 SER TYR ILE THR SER LEU TYR LYS LYS ALA GLY TRP MET SEQRES 3 A 383 GLY SER ASN GLU ALA GLN VAL LYS LYS GLU SER ILE GLY SEQRES 4 A 383 GLU ILE MET GLY LYS LEU MET GLN GLY GLU ILE GLY ASP SEQRES 5 A 383 GLU GLU LEU SER LYS ARG ILE LYS GLU ILE PHE GLY LYS SEQRES 6 A 383 ARG LEU GLN TRP GLY TYR LYS PRO THR HIS GLN GLN GLN SEQRES 7 A 383 LEU ALA PHE ASN LEU ASP PHE ILE LYS SER LEU LYS GLU SEQRES 8 A 383 MET ASP MET SER GLY GLU ILE ASP THR MET ASN GLU GLU SEQRES 9 A 383 THR TYR GLU LEU PRO SER ALA PHE LEU GLU ALA ALA PHE SEQRES 10 A 383 GLY LYS THR ILE LYS GLN SER GLY CYS TYR PHE LYS ASP SEQRES 11 A 383 GLU THR THR THR ILE ASP GLU ALA GLU GLU ALA SER HIS SEQRES 12 A 383 GLU LEU TYR CYS GLU ARG ALA GLN ILE LYS ASP GLY GLN SEQRES 13 A 383 THR VAL LEU ASP ILE GLY CYS GLY GLN GLY GLY LEU VAL SEQRES 14 A 383 LEU HIS ILE ALA GLN LYS TYR LYS ASN CYS HIS VAL THR SEQRES 15 A 383 GLY LEU THR ASN SER LYS ALA GLN LYS ASN TYR ILE LEU SEQRES 16 A 383 MET GLN ALA GLU LYS LEU GLN LEU SER ASN VAL ASP VAL SEQRES 17 A 383 ILE LEU ALA ASP VAL THR LYS HIS GLU SER ASP LYS THR SEQRES 18 A 383 TYR ASP ARG ILE LEU VAL ILE GLU THR ILE ALA HIS MET SEQRES 19 A 383 LYS ASN ILE GLN LEU PHE MET LYS LYS LEU SER THR TRP SEQRES 20 A 383 MET THR GLU ASP SER LEU LEU PHE VAL ASP HIS ILE CYS SEQRES 21 A 383 HIS LYS THR PHE SER HIS HIS PHE GLU ALA ILE ASP GLU SEQRES 22 A 383 ASP ASP TRP TYR SER GLY PHE ILE PHE PRO LYS GLY CYS SEQRES 23 A 383 VAL THR ILE LEU SER ALA SER ALA LEU LEU TYR PHE GLN SEQRES 24 A 383 ASP ASP VAL THR ILE LEU ASP HIS TRP VAL VAL ASN GLY SEQRES 25 A 383 MET HIS MET ALA ARG SER VAL ASP ALA TRP ARG LYS LYS SEQRES 26 A 383 LEU ASP LYS ASN MET GLU LEU ALA ARG GLU ILE LEU LEU SEQRES 27 A 383 PRO GLY LEU GLY SER LYS GLU ALA VAL ASN GLY VAL ILE SEQRES 28 A 383 THR HIS ILE ARG THR PHE CYS MET GLY GLY TYR GLU GLN SEQRES 29 A 383 PHE SER TYR ASN ASN GLY GLU GLU TRP MET VAL ALA GLN SEQRES 30 A 383 MET LEU PHE LYS LYS LYS HET SAM A 401 27 HET REN A 402 24 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM REN (S)-RETICULINE HETSYN REN (1S)-1-(3-HYDROXY-4-METHOXYBENZYL)-6-METHOXY-2-METHYL- HETSYN 2 REN 1,2,3,4-TETRAHYDROISOQUINOLIN-7-OL FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 REN C19 H23 N O4 FORMUL 4 HOH *191(H2 O) HELIX 1 AA1 SER A 12 GLN A 22 1 11 HELIX 2 AA2 GLY A 26 TYR A 46 1 21 HELIX 3 AA3 THR A 49 LYS A 65 1 17 HELIX 4 AA4 PRO A 84 PHE A 92 1 9 HELIX 5 AA5 THR A 109 ALA A 125 1 17 HELIX 6 AA6 GLY A 141 TYR A 151 1 11 HELIX 7 AA7 SER A 162 LEU A 176 1 15 HELIX 8 AA8 THR A 205 MET A 209 5 5 HELIX 9 AA9 ASN A 211 TRP A 222 1 12 HELIX 10 AB1 TRP A 251 PHE A 257 1 7 HELIX 11 AB2 SER A 268 PHE A 273 5 6 HELIX 12 AB3 GLY A 287 ASN A 304 1 18 HELIX 13 AB4 ASN A 304 GLY A 317 1 14 HELIX 14 AB5 SER A 318 TYR A 342 1 25 HELIX 15 AB6 ASN A 343 GLU A 346 5 4 SHEET 1 AA1 7 VAL A 181 LEU A 185 0 SHEET 2 AA1 7 HIS A 155 THR A 160 1 N GLY A 158 O ILE A 184 SHEET 3 AA1 7 THR A 132 ILE A 136 1 N VAL A 133 O THR A 157 SHEET 4 AA1 7 ARG A 199 ILE A 203 1 O LEU A 201 N ILE A 136 SHEET 5 AA1 7 LEU A 228 HIS A 236 1 O PHE A 230 N ILE A 200 SHEET 6 AA1 7 THR A 263 SER A 266 1 O LEU A 265 N HIS A 236 SHEET 7 AA1 7 HIS A 241 HIS A 242 -1 N HIS A 241 O ILE A 264 SHEET 1 AA2 7 VAL A 181 LEU A 185 0 SHEET 2 AA2 7 HIS A 155 THR A 160 1 N GLY A 158 O ILE A 184 SHEET 3 AA2 7 THR A 132 ILE A 136 1 N VAL A 133 O THR A 157 SHEET 4 AA2 7 ARG A 199 ILE A 203 1 O LEU A 201 N ILE A 136 SHEET 5 AA2 7 LEU A 228 HIS A 236 1 O PHE A 230 N ILE A 200 SHEET 6 AA2 7 TRP A 348 LYS A 357 -1 O ALA A 351 N HIS A 233 SHEET 7 AA2 7 VAL A 277 VAL A 285 -1 N LEU A 280 O LEU A 354 CRYST1 103.989 103.989 82.444 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009616 0.005552 0.000000 0.00000 SCALE2 0.000000 0.011104 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012129 0.00000 CONECT 2759 2760 CONECT 2760 2759 2761 2764 CONECT 2761 2760 2762 2763 CONECT 2762 2761 CONECT 2763 2761 CONECT 2764 2760 2765 CONECT 2765 2764 2766 CONECT 2766 2765 2767 2768 CONECT 2767 2766 CONECT 2768 2766 2769 CONECT 2769 2768 2770 2771 CONECT 2770 2769 2775 CONECT 2771 2769 2772 2773 CONECT 2772 2771 CONECT 2773 2771 2774 2775 CONECT 2774 2773 CONECT 2775 2770 2773 2776 CONECT 2776 2775 2777 2785 CONECT 2777 2776 2778 CONECT 2778 2777 2779 CONECT 2779 2778 2780 2785 CONECT 2780 2779 2781 2782 CONECT 2781 2780 CONECT 2782 2780 2783 CONECT 2783 2782 2784 CONECT 2784 2783 2785 CONECT 2785 2776 2779 2784 CONECT 2786 2787 2805 CONECT 2787 2786 2788 2809 CONECT 2788 2787 2789 2807 CONECT 2789 2788 2790 CONECT 2790 2789 2791 2805 CONECT 2791 2790 2792 CONECT 2792 2791 2793 CONECT 2793 2792 2794 2806 CONECT 2794 2793 2795 2805 CONECT 2795 2794 2796 CONECT 2796 2795 2797 2804 CONECT 2797 2796 2798 CONECT 2798 2797 2799 CONECT 2799 2798 2800 2802 CONECT 2800 2799 2801 CONECT 2801 2800 CONECT 2802 2799 2803 2804 CONECT 2803 2802 CONECT 2804 2796 2802 CONECT 2805 2786 2790 2794 CONECT 2806 2793 CONECT 2807 2788 2808 CONECT 2808 2807 CONECT 2809 2787 MASTER 399 0 2 15 14 0 0 6 2963 1 51 30 END