HEADER CELL CYCLE 03-SEP-24 9DHF TITLE THE RETINOBLASTOMA PROTEIN WITH MUTATION E554K COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOBLASTOMA-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: P105-RB,P110-RB1,PRB,RB,PP110; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CANCER MISSENSE MUTATION, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR A.RUIZ-RIVERA,A.CASTRO,J.R.BURKE REVDAT 3 26-MAR-25 9DHF 1 JRNL REVDAT 2 26-FEB-25 9DHF 1 JRNL REVDAT 1 19-FEB-25 9DHF 0 JRNL AUTH A.CASTRO,A.RUIZ RIVERA,C.C.MOORMAN,E.R.WOLF-SAXON,H.N.MIMS, JRNL AUTH 2 V.I.VASQUEZ MEZA,M.A.RANGEL,M.M.LOERA,I.C.BOND,S.B.BUCHANAN, JRNL AUTH 3 E.VILLARREAL,S.TRIPATHI,S.M.RUBIN,J.R.BURKE JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF CANCER-ASSOCIATED JRNL TITL 2 MISSENSE VARIANTS IN THE RETINOBLASTOMA PROTEIN POCKET JRNL TITL 3 DOMAIN. JRNL REF J.BIOL.CHEM. V. 301 08284 2025 JRNL REFN ESSN 1083-351X JRNL PMID 39938803 JRNL DOI 10.1016/J.JBC.2025.108284 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 38627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3100 - 5.4400 1.00 2628 138 0.2057 0.2478 REMARK 3 2 5.4400 - 4.3200 1.00 2605 139 0.1930 0.2363 REMARK 3 3 4.3200 - 3.7800 1.00 2620 147 0.1959 0.2387 REMARK 3 4 3.7800 - 3.4300 1.00 2631 144 0.2193 0.2424 REMARK 3 5 3.4300 - 3.1900 1.00 2579 139 0.2340 0.3053 REMARK 3 6 3.1900 - 3.0000 1.00 2641 143 0.2482 0.2864 REMARK 3 7 3.0000 - 2.8500 1.00 2624 147 0.2493 0.2896 REMARK 3 8 2.8500 - 2.7200 1.00 2599 140 0.2406 0.2409 REMARK 3 9 2.7200 - 2.6200 1.00 2654 146 0.2454 0.2845 REMARK 3 10 2.6200 - 2.5300 1.00 2560 141 0.2655 0.2657 REMARK 3 11 2.5300 - 2.4500 1.00 2632 147 0.2775 0.3046 REMARK 3 12 2.4500 - 2.3800 1.00 2608 142 0.2885 0.3302 REMARK 3 13 2.3800 - 2.3200 1.00 2628 142 0.3117 0.3180 REMARK 3 14 2.3200 - 2.2600 1.00 2619 144 0.3313 0.3909 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.354 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.377 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 5767 REMARK 3 ANGLE : 1.409 7767 REMARK 3 CHIRALITY : 0.065 875 REMARK 3 PLANARITY : 0.010 965 REMARK 3 DIHEDRAL : 16.858 2195 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -61.0533 33.4686 0.7769 REMARK 3 T TENSOR REMARK 3 T11: 0.3543 T22: 0.3403 REMARK 3 T33: 0.3295 T12: -0.0728 REMARK 3 T13: -0.0017 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.4545 L22: 0.6478 REMARK 3 L33: 0.4898 L12: -0.2803 REMARK 3 L13: -0.0139 L23: -0.0798 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: 0.0881 S13: 0.2129 REMARK 3 S21: -0.0057 S22: -0.0139 S23: -0.1661 REMARK 3 S31: -0.2512 S32: 0.1223 S33: 0.0030 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9DHF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1000288073. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : ASYMMETRIC CURVED CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38644 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 47.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG8K, 0.1M SODIUM CITRATE, 0.1M REMARK 280 SUCCINATE PH 5.5, 1M LITHIUM CHLORIDE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 125.17800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 72.27155 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 11.77000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 125.17800 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 72.27155 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 11.77000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 125.17800 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 72.27155 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 11.77000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 144.54310 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 23.54000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 144.54310 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 23.54000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 144.54310 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 23.54000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 377 REMARK 465 GLU A 378 REMARK 465 PHE A 379 REMARK 465 ASN A 380 REMARK 465 THR A 381 REMARK 465 ILE A 382 REMARK 465 GLN A 436 REMARK 465 GLY A 437 REMARK 465 CYS A 438 REMARK 465 ARG A 500 REMARK 465 SER A 501 REMARK 465 THR A 502 REMARK 465 SER A 503 REMARK 465 GLN A 504 REMARK 465 ASN A 505 REMARK 465 LEU A 506 REMARK 465 ASP A 507 REMARK 465 SER A 508 REMARK 465 GLY A 509 REMARK 465 THR A 510 REMARK 465 LYS A 577 REMARK 465 ASP A 578 REMARK 465 ARG A 579 REMARK 465 GLU A 580 REMARK 465 GLY A 581 REMARK 465 PRO A 582 REMARK 465 THR A 583 REMARK 465 ASP A 584 REMARK 465 HIS A 585 REMARK 465 LEU A 586 REMARK 465 GLU A 587 REMARK 465 SER A 588 REMARK 465 ALA A 589 REMARK 465 CYS A 590 REMARK 465 PRO A 591 REMARK 465 LEU A 592 REMARK 465 ASN A 593 REMARK 465 LEU A 594 REMARK 465 PRO A 595 REMARK 465 LEU A 596 REMARK 465 GLN A 597 REMARK 465 ASN A 598 REMARK 465 PRO A 640 REMARK 465 LYS A 641 REMARK 465 LYS A 642 REMARK 465 PRO A 786 REMARK 465 ARG A 787 REMARK 465 SER A 788 REMARK 465 PRO A 789 REMARK 465 TYR A 790 REMARK 465 LYS A 791 REMARK 465 PHE A 792 REMARK 465 PRO A 793 REMARK 465 GLY B 377 REMARK 465 GLU B 378 REMARK 465 PHE B 379 REMARK 465 ASN B 380 REMARK 465 THR B 381 REMARK 465 ILE B 382 REMARK 465 GLN B 383 REMARK 465 ARG B 500 REMARK 465 SER B 501 REMARK 465 THR B 502 REMARK 465 SER B 503 REMARK 465 GLN B 504 REMARK 465 ASN B 505 REMARK 465 LEU B 506 REMARK 465 ASP B 507 REMARK 465 SER B 508 REMARK 465 GLY B 509 REMARK 465 THR B 510 REMARK 465 CYS B 590 REMARK 465 PRO B 591 REMARK 465 LEU B 592 REMARK 465 ASN B 593 REMARK 465 LEU B 594 REMARK 465 PRO B 595 REMARK 465 LEU B 596 REMARK 465 GLN B 597 REMARK 465 ASN B 598 REMARK 465 ASN B 599 REMARK 465 VAL B 637 REMARK 465 ARG B 638 REMARK 465 ALA B 639 REMARK 465 PRO B 640 REMARK 465 LYS B 641 REMARK 465 LYS B 642 REMARK 465 ARG B 787 REMARK 465 SER B 788 REMARK 465 PRO B 789 REMARK 465 TYR B 790 REMARK 465 LYS B 791 REMARK 465 PHE B 792 REMARK 465 PRO B 793 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN B 480 O HOH B 809 1.47 REMARK 500 HZ1 LYS B 530 O HOH B 811 1.50 REMARK 500 HH22 ARG B 467 OD2 ASP B 604 1.53 REMARK 500 HH TYR B 403 OE2 GLU B 465 1.57 REMARK 500 HG SER A 397 OE2 GLU A 458 1.57 REMARK 500 O ALA B 562 HG SER B 567 1.60 REMARK 500 O HOH B 850 O HOH B 864 2.05 REMARK 500 O HOH A 811 O HOH A 829 2.05 REMARK 500 O HOH B 867 O HOH B 893 2.08 REMARK 500 O HOH B 846 O HOH B 862 2.10 REMARK 500 OH TYR A 403 OE2 GLU A 465 2.13 REMARK 500 O HOH A 812 O HOH A 826 2.13 REMARK 500 OD1 ASP B 479 O HOH B 801 2.14 REMARK 500 O HOH B 880 O HOH B 896 2.14 REMARK 500 OE1 GLU B 545 O HOH B 802 2.15 REMARK 500 OD1 ASN B 472 O HOH B 803 2.16 REMARK 500 OG SER B 391 O HOH B 804 2.17 REMARK 500 O GLU B 466 O HOH B 805 2.18 REMARK 500 NE2 GLN B 736 O HOH B 806 2.18 REMARK 500 O VAL A 419 OH TYR A 446 2.18 REMARK 500 OE1 GLU A 746 O HOH A 801 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE21 GLN A 444 OE1 GLU B 440 6454 1.56 REMARK 500 NE2 GLN A 444 OE1 GLU B 440 6454 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 397 167.02 -48.35 REMARK 500 GLU A 440 -52.93 -149.73 REMARK 500 PRO A 515 35.76 -93.64 REMARK 500 SER A 560 -55.32 -143.94 REMARK 500 ASP A 566 -6.14 77.68 REMARK 500 ARG A 698 -163.92 -123.33 REMARK 500 ILE A 744 -81.96 -94.00 REMARK 500 VAL A 759 -51.98 -125.86 REMARK 500 CYS B 438 37.49 -80.02 REMARK 500 PRO B 515 32.06 -92.49 REMARK 500 SER B 560 -58.22 -143.99 REMARK 500 ASP B 566 -2.06 73.68 REMARK 500 ARG B 698 -161.92 -120.34 REMARK 500 ILE B 744 -77.36 -92.49 REMARK 500 GLU B 746 -102.00 47.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 907 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH B 908 DISTANCE = 7.55 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ELL RELATED DB: PDB DBREF 9DHF A 380 793 UNP P06400 RB_HUMAN 380 793 DBREF 9DHF B 380 793 UNP P06400 RB_HUMAN 380 793 SEQADV 9DHF GLY A 377 UNP P06400 EXPRESSION TAG SEQADV 9DHF GLU A 378 UNP P06400 EXPRESSION TAG SEQADV 9DHF PHE A 379 UNP P06400 EXPRESSION TAG SEQADV 9DHF LYS A 554 UNP P06400 GLU 554 CONFLICT SEQADV 9DHF GLU A 608 UNP P06400 SER 608 CONFLICT SEQADV 9DHF ALA A 612 UNP P06400 SER 612 CONFLICT SEQADV 9DHF A UNP P06400 LYS 616 DELETION SEQADV 9DHF A UNP P06400 GLY 617 DELETION SEQADV 9DHF A UNP P06400 SER 618 DELETION SEQADV 9DHF A UNP P06400 THR 619 DELETION SEQADV 9DHF A UNP P06400 THR 620 DELETION SEQADV 9DHF A UNP P06400 ARG 621 DELETION SEQADV 9DHF A UNP P06400 VAL 622 DELETION SEQADV 9DHF A UNP P06400 ASN 623 DELETION SEQADV 9DHF A UNP P06400 SER 624 DELETION SEQADV 9DHF A UNP P06400 THR 625 DELETION SEQADV 9DHF A UNP P06400 ALA 626 DELETION SEQADV 9DHF A UNP P06400 ASN 627 DELETION SEQADV 9DHF A UNP P06400 ALA 628 DELETION SEQADV 9DHF A UNP P06400 GLU 629 DELETION SEQADV 9DHF A UNP P06400 THR 630 DELETION SEQADV 9DHF A UNP P06400 GLN 631 DELETION SEQADV 9DHF A UNP P06400 ALA 632 DELETION SEQADV 9DHF A UNP P06400 THR 633 DELETION SEQADV 9DHF A UNP P06400 SER 634 DELETION SEQADV 9DHF A UNP P06400 ALA 635 DELETION SEQADV 9DHF A UNP P06400 PHE 636 DELETION SEQADV 9DHF A UNP P06400 GLN 637 DELETION SEQADV 9DHF A UNP P06400 THR 638 DELETION SEQADV 9DHF A UNP P06400 GLN 639 DELETION SEQADV 9DHF A UNP P06400 LYS 640 DELETION SEQADV 9DHF A UNP P06400 PRO 641 DELETION SEQADV 9DHF A UNP P06400 LEU 642 DELETION SEQADV 9DHF ALA A 780 UNP P06400 SER 780 CONFLICT SEQADV 9DHF GLY B 377 UNP P06400 EXPRESSION TAG SEQADV 9DHF GLU B 378 UNP P06400 EXPRESSION TAG SEQADV 9DHF PHE B 379 UNP P06400 EXPRESSION TAG SEQADV 9DHF LYS B 554 UNP P06400 GLU 554 CONFLICT SEQADV 9DHF GLU B 608 UNP P06400 SER 608 CONFLICT SEQADV 9DHF ALA B 639 UNP P06400 SER 612 CONFLICT SEQADV 9DHF B UNP P06400 LYS 616 DELETION SEQADV 9DHF B UNP P06400 GLY 617 DELETION SEQADV 9DHF B UNP P06400 SER 618 DELETION SEQADV 9DHF B UNP P06400 THR 619 DELETION SEQADV 9DHF B UNP P06400 THR 620 DELETION SEQADV 9DHF B UNP P06400 ARG 621 DELETION SEQADV 9DHF B UNP P06400 VAL 622 DELETION SEQADV 9DHF B UNP P06400 ASN 623 DELETION SEQADV 9DHF B UNP P06400 SER 624 DELETION SEQADV 9DHF B UNP P06400 THR 625 DELETION SEQADV 9DHF B UNP P06400 ALA 626 DELETION SEQADV 9DHF B UNP P06400 ASN 627 DELETION SEQADV 9DHF B UNP P06400 ALA 628 DELETION SEQADV 9DHF B UNP P06400 GLU 629 DELETION SEQADV 9DHF B UNP P06400 THR 630 DELETION SEQADV 9DHF B UNP P06400 GLN 631 DELETION SEQADV 9DHF B UNP P06400 ALA 632 DELETION SEQADV 9DHF B UNP P06400 THR 633 DELETION SEQADV 9DHF B UNP P06400 SER 634 DELETION SEQADV 9DHF B UNP P06400 ALA 635 DELETION SEQADV 9DHF B UNP P06400 PHE 636 DELETION SEQADV 9DHF B UNP P06400 GLN 637 DELETION SEQADV 9DHF B UNP P06400 THR 638 DELETION SEQADV 9DHF B UNP P06400 GLN 639 DELETION SEQADV 9DHF B UNP P06400 LYS 640 DELETION SEQADV 9DHF B UNP P06400 PRO 641 DELETION SEQADV 9DHF B UNP P06400 LEU 642 DELETION SEQADV 9DHF ALA B 780 UNP P06400 SER 780 CONFLICT SEQRES 1 A 390 GLY GLU PHE ASN THR ILE GLN GLN LEU MET MET ILE LEU SEQRES 2 A 390 ASN SER ALA SER ASP GLN PRO SER GLU ASN LEU ILE SER SEQRES 3 A 390 TYR PHE ASN ASN CYS THR VAL ASN PRO LYS GLU SER ILE SEQRES 4 A 390 LEU LYS ARG VAL LYS ASP ILE GLY TYR ILE PHE LYS GLU SEQRES 5 A 390 LYS PHE ALA LYS ALA VAL GLY GLN GLY CYS VAL GLU ILE SEQRES 6 A 390 GLY SER GLN ARG TYR LYS LEU GLY VAL ARG LEU TYR TYR SEQRES 7 A 390 ARG VAL MET GLU SER MET LEU LYS SER GLU GLU GLU ARG SEQRES 8 A 390 LEU SER ILE GLN ASN PHE SER LYS LEU LEU ASN ASP ASN SEQRES 9 A 390 ILE PHE HIS MET SER LEU LEU ALA CYS ALA LEU GLU VAL SEQRES 10 A 390 VAL MET ALA THR TYR SER ARG SER THR SER GLN ASN LEU SEQRES 11 A 390 ASP SER GLY THR ASP LEU SER PHE PRO TRP ILE LEU ASN SEQRES 12 A 390 VAL LEU ASN LEU LYS ALA PHE ASP PHE TYR LYS VAL ILE SEQRES 13 A 390 GLU SER PHE ILE LYS ALA GLU GLY ASN LEU THR ARG GLU SEQRES 14 A 390 MET ILE LYS HIS LEU GLU ARG CYS LYS HIS ARG ILE MET SEQRES 15 A 390 GLU SER LEU ALA TRP LEU SER ASP SER PRO LEU PHE ASP SEQRES 16 A 390 LEU ILE LYS GLN SER LYS ASP ARG GLU GLY PRO THR ASP SEQRES 17 A 390 HIS LEU GLU SER ALA CYS PRO LEU ASN LEU PRO LEU GLN SEQRES 18 A 390 ASN ASN HIS THR ALA ALA ASP MET TYR LEU GLU PRO VAL SEQRES 19 A 390 ARG ALA PRO LYS LYS LYS SER THR SER LEU SER LEU PHE SEQRES 20 A 390 TYR LYS LYS VAL TYR ARG LEU ALA TYR LEU ARG LEU ASN SEQRES 21 A 390 THR LEU CYS GLU ARG LEU LEU SER GLU HIS PRO GLU LEU SEQRES 22 A 390 GLU HIS ILE ILE TRP THR LEU PHE GLN HIS THR LEU GLN SEQRES 23 A 390 ASN GLU TYR GLU LEU MET ARG ASP ARG HIS LEU ASP GLN SEQRES 24 A 390 ILE MET MET CYS SER MET TYR GLY ILE CYS LYS VAL LYS SEQRES 25 A 390 ASN ILE ASP LEU LYS PHE LYS ILE ILE VAL THR ALA TYR SEQRES 26 A 390 LYS ASP LEU PRO HIS ALA VAL GLN GLU THR PHE LYS ARG SEQRES 27 A 390 VAL LEU ILE LYS GLU GLU GLU TYR ASP SER ILE ILE VAL SEQRES 28 A 390 PHE TYR ASN SER VAL PHE MET GLN ARG LEU LYS THR ASN SEQRES 29 A 390 ILE LEU GLN TYR ALA SER THR ARG PRO PRO THR LEU ALA SEQRES 30 A 390 PRO ILE PRO HIS ILE PRO ARG SER PRO TYR LYS PHE PRO SEQRES 1 B 390 GLY GLU PHE ASN THR ILE GLN GLN LEU MET MET ILE LEU SEQRES 2 B 390 ASN SER ALA SER ASP GLN PRO SER GLU ASN LEU ILE SER SEQRES 3 B 390 TYR PHE ASN ASN CYS THR VAL ASN PRO LYS GLU SER ILE SEQRES 4 B 390 LEU LYS ARG VAL LYS ASP ILE GLY TYR ILE PHE LYS GLU SEQRES 5 B 390 LYS PHE ALA LYS ALA VAL GLY GLN GLY CYS VAL GLU ILE SEQRES 6 B 390 GLY SER GLN ARG TYR LYS LEU GLY VAL ARG LEU TYR TYR SEQRES 7 B 390 ARG VAL MET GLU SER MET LEU LYS SER GLU GLU GLU ARG SEQRES 8 B 390 LEU SER ILE GLN ASN PHE SER LYS LEU LEU ASN ASP ASN SEQRES 9 B 390 ILE PHE HIS MET SER LEU LEU ALA CYS ALA LEU GLU VAL SEQRES 10 B 390 VAL MET ALA THR TYR SER ARG SER THR SER GLN ASN LEU SEQRES 11 B 390 ASP SER GLY THR ASP LEU SER PHE PRO TRP ILE LEU ASN SEQRES 12 B 390 VAL LEU ASN LEU LYS ALA PHE ASP PHE TYR LYS VAL ILE SEQRES 13 B 390 GLU SER PHE ILE LYS ALA GLU GLY ASN LEU THR ARG GLU SEQRES 14 B 390 MET ILE LYS HIS LEU GLU ARG CYS LYS HIS ARG ILE MET SEQRES 15 B 390 GLU SER LEU ALA TRP LEU SER ASP SER PRO LEU PHE ASP SEQRES 16 B 390 LEU ILE LYS GLN SER LYS ASP ARG GLU GLY PRO THR ASP SEQRES 17 B 390 HIS LEU GLU SER ALA CYS PRO LEU ASN LEU PRO LEU GLN SEQRES 18 B 390 ASN ASN HIS THR ALA ALA ASP MET TYR LEU GLU PRO VAL SEQRES 19 B 390 ARG ALA PRO LYS LYS LYS SER THR SER LEU SER LEU PHE SEQRES 20 B 390 TYR LYS LYS VAL TYR ARG LEU ALA TYR LEU ARG LEU ASN SEQRES 21 B 390 THR LEU CYS GLU ARG LEU LEU SER GLU HIS PRO GLU LEU SEQRES 22 B 390 GLU HIS ILE ILE TRP THR LEU PHE GLN HIS THR LEU GLN SEQRES 23 B 390 ASN GLU TYR GLU LEU MET ARG ASP ARG HIS LEU ASP GLN SEQRES 24 B 390 ILE MET MET CYS SER MET TYR GLY ILE CYS LYS VAL LYS SEQRES 25 B 390 ASN ILE ASP LEU LYS PHE LYS ILE ILE VAL THR ALA TYR SEQRES 26 B 390 LYS ASP LEU PRO HIS ALA VAL GLN GLU THR PHE LYS ARG SEQRES 27 B 390 VAL LEU ILE LYS GLU GLU GLU TYR ASP SER ILE ILE VAL SEQRES 28 B 390 PHE TYR ASN SER VAL PHE MET GLN ARG LEU LYS THR ASN SEQRES 29 B 390 ILE LEU GLN TYR ALA SER THR ARG PRO PRO THR LEU ALA SEQRES 30 B 390 PRO ILE PRO HIS ILE PRO ARG SER PRO TYR LYS PHE PRO FORMUL 3 HOH *138(H2 O) HELIX 1 AA1 GLN A 383 SER A 391 1 9 HELIX 2 AA2 SER A 397 ASN A 405 1 9 HELIX 3 AA3 PRO A 411 VAL A 434 1 24 HELIX 4 AA4 GLU A 440 GLU A 465 1 26 HELIX 5 AA5 SER A 469 ASN A 478 1 10 HELIX 6 AA6 ASP A 479 TYR A 498 1 20 HELIX 7 AA7 PRO A 515 LEU A 521 1 7 HELIX 8 AA8 LYS A 524 LYS A 530 1 7 HELIX 9 AA9 VAL A 531 LYS A 537 1 7 HELIX 10 AB1 THR A 543 SER A 560 1 18 HELIX 11 AB2 LEU A 561 LEU A 564 5 4 HELIX 12 AB3 SER A 567 SER A 576 1 10 HELIX 13 AB4 THR A 601 LEU A 607 1 7 HELIX 14 AB5 SER A 644 LEU A 670 1 27 HELIX 15 AB6 GLU A 675 GLU A 691 1 17 HELIX 16 AB7 TYR A 692 ARG A 696 5 5 HELIX 17 AB8 HIS A 699 LYS A 715 1 17 HELIX 18 AB9 LYS A 720 ASP A 730 1 11 HELIX 19 AC1 GLN A 736 ARG A 741 1 6 HELIX 20 AC2 SER A 751 VAL A 759 1 9 HELIX 21 AC3 VAL A 759 LEU A 769 1 11 HELIX 22 AC4 GLN A 770 SER A 773 5 4 HELIX 23 AC5 LEU B 385 ALA B 392 1 8 HELIX 24 AC6 SER B 397 ASN B 405 1 9 HELIX 25 AC7 PRO B 411 GLY B 435 1 25 HELIX 26 AC8 CYS B 438 GLU B 465 1 28 HELIX 27 AC9 SER B 469 ASN B 478 1 10 HELIX 28 AD1 ASP B 479 TYR B 498 1 20 HELIX 29 AD2 PRO B 515 LEU B 521 1 7 HELIX 30 AD3 LYS B 524 LYS B 530 1 7 HELIX 31 AD4 VAL B 531 GLU B 539 1 9 HELIX 32 AD5 THR B 543 SER B 560 1 18 HELIX 33 AD6 LEU B 561 LEU B 564 5 4 HELIX 34 AD7 PRO B 568 ARG B 579 1 12 HELIX 35 AD8 GLY B 581 GLU B 587 1 7 HELIX 36 AD9 THR B 601 LEU B 607 1 7 HELIX 37 AE1 SER B 644 LEU B 670 1 27 HELIX 38 AE2 GLU B 675 GLU B 691 1 17 HELIX 39 AE3 TYR B 692 ARG B 696 5 5 HELIX 40 AE4 HIS B 699 LYS B 715 1 17 HELIX 41 AE5 LYS B 720 ASP B 730 1 11 HELIX 42 AE6 GLN B 736 ARG B 741 1 6 HELIX 43 AE7 SER B 751 VAL B 759 1 9 HELIX 44 AE8 VAL B 759 TYR B 771 1 13 SHEET 1 AA1 2 VAL A 742 LEU A 743 0 SHEET 2 AA1 2 TYR A 749 ASP A 750 -1 O ASP A 750 N VAL A 742 SHEET 1 AA2 2 VAL B 742 LYS B 745 0 SHEET 2 AA2 2 GLU B 748 ASP B 750 -1 O GLU B 748 N LYS B 745 CISPEP 1 PHE A 514 PRO A 515 0 10.22 CISPEP 2 PHE B 514 PRO B 515 0 5.58 CRYST1 250.356 250.356 35.310 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003994 0.002306 0.000000 0.00000 SCALE2 0.000000 0.004612 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028321 0.00000 MASTER 447 0 0 44 4 0 0 6 5791 2 0 60 END