HEADER RNA BINDING PROTEIN 04-SEP-24 9DHX TITLE HUMAN ARGONAUTE-2 R315V/H316A - MIR-122 IN COMPLEX WITH A FULLY TITLE 2 COMPLEMENTARY TARGET COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGONAUTE-2 R315V/H316A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ARGONAUTE2,HAGO2,ARGONAUTE RISC CATALYTIC COMPONENT 2, COMPND 5 EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2,EIF-2C 2,EIF2C 2,PAZ COMPND 6 PIWI DOMAIN PROTEIN,PPD,PROTEIN SLICER; COMPND 7 EC: 3.1.26.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: MIR-122; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: TARGET RNA; COMPND 16 CHAIN: C; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AGO2, EIF2C2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS RNA BINDING PROTEIN, RNP, RNA, ARGONAUTE2, AGO2 EXPDTA ELECTRON MICROSCOPY AUTHOR S.SARKAR,L.F.R.GEBERT,I.J.MACRAE REVDAT 1 04-MAR-26 9DHX 0 JRNL AUTH S.SARKAR,L.F.R.GEBERT,I.J.MACRAE JRNL TITL HUMAN ARGONAUTE-2 R315V/H316A - MIR-122 IN COMPLEX WITH A JRNL TITL 2 FULLY COMPLEMENTARY TARGET JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, EPU, CRYOSPARC, UCSF REMARK 3 CHIMERAX, CRYOSPARC, CRYOSPARC, PHENIX, REMARK 3 COOT, UCSF CHIMERAX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 6N4O REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.100 REMARK 3 NUMBER OF PARTICLES : 264433 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9DHX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1000287820. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN ARGONAUTE-2 R315V/H316A - REMARK 245 MIR-122 IN COMPLEX WITH A FULLY REMARK 245 COMPLEMENTARY TARGET REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.40 REMARK 245 SAMPLE SUPPORT DETAILS : 15 MA REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 15000 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : 190000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 PRO A 7 REMARK 465 ALA A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 PRO A 14 REMARK 465 PRO A 15 REMARK 465 PRO A 16 REMARK 465 PRO A 17 REMARK 465 ILE A 18 REMARK 465 GLN A 19 REMARK 465 GLY A 20 REMARK 465 TYR A 21 REMARK 465 VAL A 117 REMARK 465 THR A 118 REMARK 465 LEU A 119 REMARK 465 PRO A 120 REMARK 465 GLY A 121 REMARK 465 GLU A 122 REMARK 465 GLY A 123 REMARK 465 LYS A 124 REMARK 465 ASP A 125 REMARK 465 ARG A 126 REMARK 465 ILE A 127 REMARK 465 SER A 185 REMARK 465 GLU A 186 REMARK 465 GLY A 187 REMARK 465 CYS A 188 REMARK 465 SER A 189 REMARK 465 GLN A 228 REMARK 465 PRO A 229 REMARK 465 VAL A 230 REMARK 465 ILE A 231 REMARK 465 GLU A 232 REMARK 465 PHE A 233 REMARK 465 VAL A 234 REMARK 465 CYS A 235 REMARK 465 GLU A 236 REMARK 465 VAL A 237 REMARK 465 LEU A 238 REMARK 465 ASP A 239 REMARK 465 PHE A 240 REMARK 465 LYS A 241 REMARK 465 SER A 242 REMARK 465 ILE A 243 REMARK 465 GLU A 244 REMARK 465 GLU A 245 REMARK 465 GLN A 246 REMARK 465 GLN A 247 REMARK 465 LYS A 248 REMARK 465 PRO A 249 REMARK 465 LEU A 250 REMARK 465 THR A 251 REMARK 465 ASP A 252 REMARK 465 SER A 253 REMARK 465 GLN A 254 REMARK 465 ARG A 255 REMARK 465 VAL A 256 REMARK 465 LYS A 257 REMARK 465 PHE A 258 REMARK 465 THR A 259 REMARK 465 LYS A 260 REMARK 465 GLU A 261 REMARK 465 ILE A 262 REMARK 465 LYS A 263 REMARK 465 GLY A 264 REMARK 465 LEU A 265 REMARK 465 LYS A 266 REMARK 465 VAL A 267 REMARK 465 GLU A 268 REMARK 465 ILE A 269 REMARK 465 THR A 270 REMARK 465 HIS A 271 REMARK 465 CYS A 272 REMARK 465 GLY A 273 REMARK 465 GLN A 274 REMARK 465 MET A 275 REMARK 465 LYS A 276 REMARK 465 ARG A 277 REMARK 465 LYS A 278 REMARK 465 TYR A 279 REMARK 465 ARG A 280 REMARK 465 VAL A 281 REMARK 465 CYS A 282 REMARK 465 ASN A 283 REMARK 465 VAL A 284 REMARK 465 THR A 285 REMARK 465 ARG A 286 REMARK 465 ARG A 287 REMARK 465 PRO A 288 REMARK 465 ALA A 289 REMARK 465 SER A 290 REMARK 465 HIS A 291 REMARK 465 GLN A 292 REMARK 465 THR A 293 REMARK 465 PHE A 294 REMARK 465 PRO A 295 REMARK 465 LEU A 296 REMARK 465 GLN A 297 REMARK 465 GLN A 298 REMARK 465 GLU A 299 REMARK 465 SER A 300 REMARK 465 GLY A 301 REMARK 465 GLN A 302 REMARK 465 THR A 303 REMARK 465 VAL A 304 REMARK 465 GLU A 305 REMARK 465 CYS A 306 REMARK 465 THR A 307 REMARK 465 VAL A 308 REMARK 465 ALA A 309 REMARK 465 GLN A 310 REMARK 465 TYR A 311 REMARK 465 PHE A 312 REMARK 465 LYS A 313 REMARK 465 ASP A 314 REMARK 465 VAL A 315 REMARK 465 ALA A 316 REMARK 465 LYS A 317 REMARK 465 LEU A 318 REMARK 465 VAL A 319 REMARK 465 LEU A 320 REMARK 465 ARG A 321 REMARK 465 TYR A 322 REMARK 465 PRO A 323 REMARK 465 HIS A 324 REMARK 465 LEU A 325 REMARK 465 PRO A 326 REMARK 465 CYS A 327 REMARK 465 LEU A 328 REMARK 465 GLN A 329 REMARK 465 VAL A 330 REMARK 465 GLY A 331 REMARK 465 GLN A 332 REMARK 465 GLU A 333 REMARK 465 GLN A 334 REMARK 465 LYS A 335 REMARK 465 HIS A 336 REMARK 465 THR A 337 REMARK 465 TYR A 338 REMARK 465 LEU A 339 REMARK 465 PRO A 340 REMARK 465 LEU A 341 REMARK 465 GLU A 342 REMARK 465 VAL A 343 REMARK 465 CYS A 344 REMARK 465 ASN A 345 REMARK 465 ILE A 346 REMARK 465 VAL A 347 REMARK 465 LYS A 820 REMARK 465 GLU A 821 REMARK 465 HIS A 822 REMARK 465 ASP A 823 REMARK 465 ALA A 824 REMARK 465 ALA A 825 REMARK 465 GLU A 826 REMARK 465 GLY A 827 REMARK 465 ASP A 828 REMARK 465 HIS A 829 REMARK 465 THR A 830 REMARK 465 ASP A 831 REMARK 465 GLY A 832 REMARK 465 GLN A 833 REMARK 465 ALA A 834 REMARK 465 ASN A 835 REMARK 465 GLY A 836 REMARK 465 ARG A 837 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 A C 22 C5' C4' O4' C3' O3' C2' O2' REMARK 470 A C 22 C1' N9 C8 N7 C5 C6 N6 REMARK 470 A C 22 N1 C2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 U B 1 P U B 1 OP3 -0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 28 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 179 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 196 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 375 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 668 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 A B 4 C5 - C6 - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 A B 4 N1 - C6 - N6 ANGL. DEV. = -5.1 DEGREES REMARK 500 U B 8 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 A B 10 C5 - C6 - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 C B 11 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 C B 11 N3 - C2 - O2 ANGL. DEV. = -4.4 DEGREES REMARK 500 A B 12 C5 - C6 - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 A B 12 N1 - C6 - N6 ANGL. DEV. = -4.9 DEGREES REMARK 500 A B 13 C5 - C6 - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 A B 13 N1 - C6 - N6 ANGL. DEV. = -4.7 DEGREES REMARK 500 G B 16 C3' - O3' - P ANGL. DEV. = -8.4 DEGREES REMARK 500 U B 17 C3' - O3' - P ANGL. DEV. = -8.8 DEGREES REMARK 500 G B 18 C3' - O3' - P ANGL. DEV. = -9.2 DEGREES REMARK 500 U B 19 C3' - O3' - P ANGL. DEV. = -9.8 DEGREES REMARK 500 A C 2 C3' - O3' - P ANGL. DEV. = -10.6 DEGREES REMARK 500 C C 4 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 C C 4 N3 - C2 - O2 ANGL. DEV. = -4.3 DEGREES REMARK 500 A C 5 C4 - C5 - C6 ANGL. DEV. = -3.0 DEGREES REMARK 500 A C 5 C5 - C6 - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 A C 5 N1 - C6 - N6 ANGL. DEV. = -4.7 DEGREES REMARK 500 C C 6 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 C C 7 N3 - C2 - O2 ANGL. DEV. = -4.6 DEGREES REMARK 500 A C 8 C4 - C5 - C6 ANGL. DEV. = -3.2 DEGREES REMARK 500 A C 8 C5 - C6 - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 A C 8 N1 - C6 - N6 ANGL. DEV. = -5.3 DEGREES REMARK 500 U C 9 O4' - C1' - N1 ANGL. DEV. = 5.0 DEGREES REMARK 500 U C 10 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 G C 11 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 C C 13 N3 - C2 - O2 ANGL. DEV. = -4.8 DEGREES REMARK 500 A C 14 C4 - C5 - C6 ANGL. DEV. = -3.0 DEGREES REMARK 500 A C 14 C5 - C6 - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 A C 14 N1 - C6 - N6 ANGL. DEV. = -4.5 DEGREES REMARK 500 C C 15 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 C C 15 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 A C 16 C5 - C6 - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 A C 16 N1 - C6 - N6 ANGL. DEV. = -5.0 DEGREES REMARK 500 C C 17 N3 - C2 - O2 ANGL. DEV. = -4.6 DEGREES REMARK 500 C C 20 N3 - C2 - O2 ANGL. DEV. = -5.2 DEGREES REMARK 500 A C 21 C4 - C5 - C6 ANGL. DEV. = -3.2 DEGREES REMARK 500 A C 21 C5 - C6 - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 A C 21 N1 - C6 - N6 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 82 40.06 -83.79 REMARK 500 ILE A 86 -59.91 -137.35 REMARK 500 ARG A 97 -60.28 -138.01 REMARK 500 LYS A 98 -15.73 -140.87 REMARK 500 PRO A 107 -7.32 -57.35 REMARK 500 VAL A 528 -39.22 -38.83 REMARK 500 PRO A 602 176.58 -58.46 REMARK 500 ASN A 623 -52.55 -141.46 REMARK 500 ASP A 697 25.62 -143.74 REMARK 500 ASP A 737 25.21 -153.43 REMARK 500 LYS A 739 -57.37 -126.22 REMARK 500 THR A 744 -37.41 -142.20 REMARK 500 THR A 794 58.09 -99.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 57 0.07 SIDE CHAIN REMARK 500 ARG A 710 0.13 SIDE CHAIN REMARK 500 G B 5 0.08 SIDE CHAIN REMARK 500 G B 7 0.06 SIDE CHAIN REMARK 500 A B 10 0.06 SIDE CHAIN REMARK 500 A B 13 0.06 SIDE CHAIN REMARK 500 U C 12 0.06 SIDE CHAIN REMARK 500 A C 16 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 597 OD2 REMARK 620 2 HIS A 807 ND1 103.7 REMARK 620 3 U C 12 OP1 105.8 148.7 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-46888 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF HUMAN ARGONAUTE2 -MIR-122 IN COMPLEX WITH A REMARK 900 FULLY COMPLEMENTARY TARGET DBREF 9DHX A 1 859 UNP Q9UKV8 AGO2_HUMAN 1 859 DBREF 9DHX B 1 20 PDB 9DHX 9DHX 1 20 DBREF 9DHX C 2 22 PDB 9DHX 9DHX 2 22 SEQADV 9DHX VAL A 315 UNP Q9UKV8 ARG 315 ENGINEERED MUTATION SEQADV 9DHX ALA A 316 UNP Q9UKV8 HIS 316 ENGINEERED MUTATION SEQADV 9DHX ASP A 387 UNP Q9UKV8 SER 387 ENGINEERED MUTATION SEQADV 9DHX ALA A 824 UNP Q9UKV8 SER 824 ENGINEERED MUTATION SEQADV 9DHX ASP A 828 UNP Q9UKV8 SER 828 ENGINEERED MUTATION SEQADV 9DHX ASP A 831 UNP Q9UKV8 SER 831 ENGINEERED MUTATION SEQADV 9DHX ALA A 834 UNP Q9UKV8 SER 834 ENGINEERED MUTATION SEQRES 1 A 859 MET TYR SER GLY ALA GLY PRO ALA LEU ALA PRO PRO ALA SEQRES 2 A 859 PRO PRO PRO PRO ILE GLN GLY TYR ALA PHE LYS PRO PRO SEQRES 3 A 859 PRO ARG PRO ASP PHE GLY THR SER GLY ARG THR ILE LYS SEQRES 4 A 859 LEU GLN ALA ASN PHE PHE GLU MET ASP ILE PRO LYS ILE SEQRES 5 A 859 ASP ILE TYR HIS TYR GLU LEU ASP ILE LYS PRO GLU LYS SEQRES 6 A 859 CYS PRO ARG ARG VAL ASN ARG GLU ILE VAL GLU HIS MET SEQRES 7 A 859 VAL GLN HIS PHE LYS THR GLN ILE PHE GLY ASP ARG LYS SEQRES 8 A 859 PRO VAL PHE ASP GLY ARG LYS ASN LEU TYR THR ALA MET SEQRES 9 A 859 PRO LEU PRO ILE GLY ARG ASP LYS VAL GLU LEU GLU VAL SEQRES 10 A 859 THR LEU PRO GLY GLU GLY LYS ASP ARG ILE PHE LYS VAL SEQRES 11 A 859 SER ILE LYS TRP VAL SER CYS VAL SER LEU GLN ALA LEU SEQRES 12 A 859 HIS ASP ALA LEU SER GLY ARG LEU PRO SER VAL PRO PHE SEQRES 13 A 859 GLU THR ILE GLN ALA LEU ASP VAL VAL MET ARG HIS LEU SEQRES 14 A 859 PRO SER MET ARG TYR THR PRO VAL GLY ARG SER PHE PHE SEQRES 15 A 859 THR ALA SER GLU GLY CYS SER ASN PRO LEU GLY GLY GLY SEQRES 16 A 859 ARG GLU VAL TRP PHE GLY PHE HIS GLN SER VAL ARG PRO SEQRES 17 A 859 SER LEU TRP LYS MET MET LEU ASN ILE ASP VAL SER ALA SEQRES 18 A 859 THR ALA PHE TYR LYS ALA GLN PRO VAL ILE GLU PHE VAL SEQRES 19 A 859 CYS GLU VAL LEU ASP PHE LYS SER ILE GLU GLU GLN GLN SEQRES 20 A 859 LYS PRO LEU THR ASP SER GLN ARG VAL LYS PHE THR LYS SEQRES 21 A 859 GLU ILE LYS GLY LEU LYS VAL GLU ILE THR HIS CYS GLY SEQRES 22 A 859 GLN MET LYS ARG LYS TYR ARG VAL CYS ASN VAL THR ARG SEQRES 23 A 859 ARG PRO ALA SER HIS GLN THR PHE PRO LEU GLN GLN GLU SEQRES 24 A 859 SER GLY GLN THR VAL GLU CYS THR VAL ALA GLN TYR PHE SEQRES 25 A 859 LYS ASP VAL ALA LYS LEU VAL LEU ARG TYR PRO HIS LEU SEQRES 26 A 859 PRO CYS LEU GLN VAL GLY GLN GLU GLN LYS HIS THR TYR SEQRES 27 A 859 LEU PRO LEU GLU VAL CYS ASN ILE VAL ALA GLY GLN ARG SEQRES 28 A 859 CYS ILE LYS LYS LEU THR ASP ASN GLN THR SER THR MET SEQRES 29 A 859 ILE ARG ALA THR ALA ARG SER ALA PRO ASP ARG GLN GLU SEQRES 30 A 859 GLU ILE SER LYS LEU MET ARG SER ALA ASP PHE ASN THR SEQRES 31 A 859 ASP PRO TYR VAL ARG GLU PHE GLY ILE MET VAL LYS ASP SEQRES 32 A 859 GLU MET THR ASP VAL THR GLY ARG VAL LEU GLN PRO PRO SEQRES 33 A 859 SER ILE LEU TYR GLY GLY ARG ASN LYS ALA ILE ALA THR SEQRES 34 A 859 PRO VAL GLN GLY VAL TRP ASP MET ARG ASN LYS GLN PHE SEQRES 35 A 859 HIS THR GLY ILE GLU ILE LYS VAL TRP ALA ILE ALA CYS SEQRES 36 A 859 PHE ALA PRO GLN ARG GLN CYS THR GLU VAL HIS LEU LYS SEQRES 37 A 859 SER PHE THR GLU GLN LEU ARG LYS ILE SER ARG ASP ALA SEQRES 38 A 859 GLY MET PRO ILE GLN GLY GLN PRO CYS PHE CYS LYS TYR SEQRES 39 A 859 ALA GLN GLY ALA ASP SER VAL GLU PRO MET PHE ARG HIS SEQRES 40 A 859 LEU LYS ASN THR TYR ALA GLY LEU GLN LEU VAL VAL VAL SEQRES 41 A 859 ILE LEU PRO GLY LYS THR PRO VAL TYR ALA GLU VAL LYS SEQRES 42 A 859 ARG VAL GLY ASP THR VAL LEU GLY MET ALA THR GLN CYS SEQRES 43 A 859 VAL GLN MET LYS ASN VAL GLN ARG THR THR PRO GLN THR SEQRES 44 A 859 LEU SER ASN LEU CYS LEU LYS ILE ASN VAL LYS LEU GLY SEQRES 45 A 859 GLY VAL ASN ASN ILE LEU LEU PRO GLN GLY ARG PRO PRO SEQRES 46 A 859 VAL PHE GLN GLN PRO VAL ILE PHE LEU GLY ALA ASP VAL SEQRES 47 A 859 THR HIS PRO PRO ALA GLY ASP GLY LYS LYS PRO SER ILE SEQRES 48 A 859 ALA ALA VAL VAL GLY SER MET ASP ALA HIS PRO ASN ARG SEQRES 49 A 859 TYR CYS ALA THR VAL ARG VAL GLN GLN HIS ARG GLN GLU SEQRES 50 A 859 ILE ILE GLN ASP LEU ALA ALA MET VAL ARG GLU LEU LEU SEQRES 51 A 859 ILE GLN PHE TYR LYS SER THR ARG PHE LYS PRO THR ARG SEQRES 52 A 859 ILE ILE PHE TYR ARG ASP GLY VAL SER GLU GLY GLN PHE SEQRES 53 A 859 GLN GLN VAL LEU HIS HIS GLU LEU LEU ALA ILE ARG GLU SEQRES 54 A 859 ALA CYS ILE LYS LEU GLU LYS ASP TYR GLN PRO GLY ILE SEQRES 55 A 859 THR PHE ILE VAL VAL GLN LYS ARG HIS HIS THR ARG LEU SEQRES 56 A 859 PHE CYS THR ASP LYS ASN GLU ARG VAL GLY LYS SER GLY SEQRES 57 A 859 ASN ILE PRO ALA GLY THR THR VAL ASP THR LYS ILE THR SEQRES 58 A 859 HIS PRO THR GLU PHE ASP PHE TYR LEU CYS SER HIS ALA SEQRES 59 A 859 GLY ILE GLN GLY THR SER ARG PRO SER HIS TYR HIS VAL SEQRES 60 A 859 LEU TRP ASP ASP ASN ARG PHE SER SER ASP GLU LEU GLN SEQRES 61 A 859 ILE LEU THR TYR GLN LEU CYS HIS THR TYR VAL ARG CYS SEQRES 62 A 859 THR ARG SER VAL SER ILE PRO ALA PRO ALA TYR TYR ALA SEQRES 63 A 859 HIS LEU VAL ALA PHE ARG ALA ARG TYR HIS LEU VAL ASP SEQRES 64 A 859 LYS GLU HIS ASP ALA ALA GLU GLY ASP HIS THR ASP GLY SEQRES 65 A 859 GLN ALA ASN GLY ARG ASP HIS GLN ALA LEU ALA LYS ALA SEQRES 66 A 859 VAL GLN VAL HIS GLN ASP THR LEU ARG THR MET TYR PHE SEQRES 67 A 859 ALA SEQRES 1 B 20 U G G A G U G U G A C A A SEQRES 2 B 20 U G G U G U U SEQRES 1 C 21 A A C A C C A U U G U C A SEQRES 2 C 21 C A C U C C A A HET MG A 901 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG MG 2+ FORMUL 5 HOH *2(H2 O) HELIX 1 AA1 PRO A 67 PHE A 82 1 16 HELIX 2 AA2 LEU A 140 SER A 148 1 9 HELIX 3 AA3 PRO A 155 HIS A 168 1 14 HELIX 4 AA4 LEU A 169 TYR A 174 1 6 HELIX 5 AA5 THR A 357 THR A 368 1 12 HELIX 6 AA6 SER A 371 ASP A 387 1 17 HELIX 7 AA7 PHE A 388 THR A 390 5 3 HELIX 8 AA8 ASP A 391 PHE A 397 1 7 HELIX 9 AA9 THR A 463 GLY A 482 1 20 HELIX 10 AB1 SER A 500 TYR A 512 1 13 HELIX 11 AB2 PRO A 527 VAL A 539 1 13 HELIX 12 AB3 MET A 549 ARG A 554 1 6 HELIX 13 AB4 THR A 556 LEU A 571 1 16 HELIX 14 AB5 PRO A 580 ARG A 583 5 4 HELIX 15 AB6 PRO A 584 GLN A 589 5 6 HELIX 16 AB7 ASP A 641 ARG A 658 1 18 HELIX 17 AB8 GLN A 675 GLU A 695 1 21 HELIX 18 AB9 SER A 775 CYS A 787 1 13 HELIX 19 AC1 PRO A 800 LEU A 817 1 18 HELIX 20 AC2 HIS A 839 VAL A 846 1 8 HELIX 21 AC3 HIS A 849 ARG A 854 1 6 SHEET 1 AA111 TYR A 625 GLN A 632 0 SHEET 2 AA111 SER A 610 SER A 617 -1 N SER A 610 O GLN A 632 SHEET 3 AA111 VAL A 591 THR A 599 -1 N THR A 599 O ILE A 611 SHEET 4 AA111 ARG A 663 ASP A 669 1 O ILE A 665 N ILE A 592 SHEET 5 AA111 GLY A 701 GLN A 708 1 O THR A 703 N PHE A 666 SHEET 6 AA111 SER A 763 ASP A 770 -1 O HIS A 764 N GLN A 708 SHEET 7 AA111 ASP A 747 CYS A 751 -1 N PHE A 748 O TYR A 765 SHEET 8 AA111 THR A 734 VAL A 736 -1 N VAL A 736 O TYR A 749 SHEET 9 AA111 THR A 406 VAL A 412 -1 N ARG A 411 O THR A 735 SHEET 10 AA111 ARG A 36 ALA A 42 -1 N ALA A 42 O THR A 406 SHEET 11 AA111 LEU A 715 CYS A 717 -1 O PHE A 716 N GLN A 41 SHEET 1 AA2 6 THR A 175 VAL A 177 0 SHEET 2 AA2 6 SER A 180 THR A 183 -1 O SER A 180 N VAL A 177 SHEET 3 AA2 6 ARG A 196 ARG A 207 -1 O PHE A 202 N PHE A 181 SHEET 4 AA2 6 MET A 213 TYR A 225 -1 O ASN A 216 N SER A 205 SHEET 5 AA2 6 PHE A 45 ASP A 48 -1 N PHE A 45 O LEU A 215 SHEET 6 AA2 6 MET A 400 VAL A 401 -1 O MET A 400 N ASP A 48 SHEET 1 AA3 5 VAL A 93 PHE A 94 0 SHEET 2 AA3 5 ASN A 99 THR A 102 -1 O TYR A 101 N VAL A 93 SHEET 3 AA3 5 ASP A 53 ILE A 61 -1 N TYR A 57 O LEU A 100 SHEET 4 AA3 5 VAL A 130 SER A 139 -1 O VAL A 138 N ILE A 54 SHEET 5 AA3 5 VAL A 113 LEU A 115 -1 N LEU A 115 O VAL A 130 SHEET 1 AA4 3 ILE A 427 ALA A 428 0 SHEET 2 AA4 3 ILE A 418 LEU A 419 -1 N ILE A 418 O ALA A 428 SHEET 3 AA4 3 ILE A 577 LEU A 578 -1 O ILE A 577 N LEU A 419 SHEET 1 AA5 4 PHE A 491 TYR A 494 0 SHEET 2 AA5 4 TRP A 451 CYS A 455 1 N ILE A 453 O PHE A 491 SHEET 3 AA5 4 LEU A 517 LEU A 522 1 O VAL A 519 N ALA A 452 SHEET 4 AA5 4 THR A 544 GLN A 548 1 O GLN A 545 N VAL A 518 LINK OD2 ASP A 597 MG MG A 901 1555 1555 2.00 LINK ND1 HIS A 807 MG MG A 901 1555 1555 1.89 LINK MG MG A 901 OP1 U C 12 1555 1555 2.00 CISPEP 1 HIS A 621 PRO A 622 0 -12.46 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 3490 6319 CONECT 5179 6319 CONECT 6109 6319 CONECT 6319 3490 5179 6109 MASTER 441 0 1 21 29 0 0 6 6318 3 4 71 END