data_9DIG # _entry.id 9DIG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.403 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9DIG pdb_00009dig 10.2210/pdb9dig/pdb WWPDB D_1000288192 ? ? EMDB EMD-46905 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-04-09 ? 2 'Structure model' 1 1 2025-04-16 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_DOI' 5 2 'Structure model' '_citation.pdbx_database_id_PubMed' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation_author.identifier_ORCID' 8 2 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9DIG _pdbx_database_status.recvd_initial_deposition_date 2024-09-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'Rous sarcoma virus frameshifting pseudoknot RNA EM straight dimer, crystal structure' 9DIB unspecified EMDB 'Rous sarcoma virus frameshifting pseudoknot RNA EM straight dimer' EMD-46905 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email adrian.ferre@gmail.com _pdbx_contact_author.name_first Adrian _pdbx_contact_author.name_last "Ferre-D'Amare" _pdbx_contact_author.name_mi R _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4549-1619 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Jones, C.P.' 1 0000-0001-7780-5278 ;Ferre-D'Amare, A.R. ; 2 0000-0003-4549-1619 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 122 _citation.language ? _citation.page_first e2418418122 _citation.page_last e2418418122 _citation.title 'Structural switching dynamically controls the doubly pseudoknotted Rous sarcoma virus-programmed ribosomal frameshifting element.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2418418122 _citation.pdbx_database_id_PubMed 40172966 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jones, C.P.' 1 0000-0001-7780-5278 primary ;Ferre-D'Amare, A.R. ; 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'frameshifting pseudoknot RNA' 35657.125 2 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 4 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGGCCACUGUUCUCACUGUUGCGCUACAUCUGGCUUUUCGGAAAUGGAAGCCAGACCACACGAAAGUGUGGAUUGACCAG UGGCCCCUCCCUGAAGGUAAACUUGUAGCGC ; _entity_poly.pdbx_seq_one_letter_code_can ;GGGCCACUGUUCUCACUGUUGCGCUACAUCUGGCUUUUCGGAAAUGGAAGCCAGACCACACGAAAGUGUGGAUUGACCAG UGGCCCCUCCCUGAAGGUAAACUUGUAGCGC ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 'MAGNESIUM ION' MG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 C n 1 5 C n 1 6 A n 1 7 C n 1 8 U n 1 9 G n 1 10 U n 1 11 U n 1 12 C n 1 13 U n 1 14 C n 1 15 A n 1 16 C n 1 17 U n 1 18 G n 1 19 U n 1 20 U n 1 21 G n 1 22 C n 1 23 G n 1 24 C n 1 25 U n 1 26 A n 1 27 C n 1 28 A n 1 29 U n 1 30 C n 1 31 U n 1 32 G n 1 33 G n 1 34 C n 1 35 U n 1 36 U n 1 37 U n 1 38 U n 1 39 C n 1 40 G n 1 41 G n 1 42 A n 1 43 A n 1 44 A n 1 45 U n 1 46 G n 1 47 G n 1 48 A n 1 49 A n 1 50 G n 1 51 C n 1 52 C n 1 53 A n 1 54 G n 1 55 A n 1 56 C n 1 57 C n 1 58 A n 1 59 C n 1 60 A n 1 61 C n 1 62 G n 1 63 A n 1 64 A n 1 65 A n 1 66 G n 1 67 U n 1 68 G n 1 69 U n 1 70 G n 1 71 G n 1 72 A n 1 73 U n 1 74 U n 1 75 G n 1 76 A n 1 77 C n 1 78 C n 1 79 A n 1 80 G n 1 81 U n 1 82 G n 1 83 G n 1 84 C n 1 85 C n 1 86 C n 1 87 C n 1 88 U n 1 89 C n 1 90 C n 1 91 C n 1 92 U n 1 93 G n 1 94 A n 1 95 A n 1 96 G n 1 97 G n 1 98 U n 1 99 A n 1 100 A n 1 101 A n 1 102 C n 1 103 U n 1 104 U n 1 105 G n 1 106 U n 1 107 A n 1 108 G n 1 109 C n 1 110 G n 1 111 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 111 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rous sarcoma virus - Prague C' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11888 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-TP(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905931 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 C 4 4 4 C C A . n A 1 5 C 5 5 5 C C A . n A 1 6 A 6 6 6 A A A . n A 1 7 C 7 7 7 C C A . n A 1 8 U 8 8 8 U U A . n A 1 9 G 9 9 9 G G A . n A 1 10 U 10 10 10 U U A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 ? ? ? A . n A 1 13 U 13 13 13 U U A . n A 1 14 C 14 14 14 C C A . n A 1 15 A 15 15 15 A A A . n A 1 16 C 16 16 16 C C A . n A 1 17 U 17 17 17 U U A . n A 1 18 G 18 18 18 G G A . n A 1 19 U 19 19 19 U U A . n A 1 20 U 20 20 20 U U A . n A 1 21 G 21 21 21 G G A . n A 1 22 C 22 22 22 C C A . n A 1 23 G 23 23 23 G G A . n A 1 24 C 24 24 24 C C A . n A 1 25 U 25 25 25 U U A . n A 1 26 A 26 26 26 A A A . n A 1 27 C 27 27 27 C C A . n A 1 28 A 28 28 28 A A A . n A 1 29 U 29 29 29 U U A . n A 1 30 C 30 30 30 C C A . n A 1 31 U 31 31 31 U U A . n A 1 32 G 32 32 32 G G A . n A 1 33 G 33 33 33 G G A . n A 1 34 C 34 34 34 C C A . n A 1 35 U 35 35 35 U U A . n A 1 36 U 36 36 36 U U A . n A 1 37 U 37 37 ? ? ? A . n A 1 38 U 38 38 ? ? ? A . n A 1 39 C 39 39 ? ? ? A . n A 1 40 G 40 40 ? ? ? A . n A 1 41 G 41 41 ? ? ? A . n A 1 42 A 42 42 ? ? ? A . n A 1 43 A 43 43 ? ? ? A . n A 1 44 A 44 44 ? ? ? A . n A 1 45 U 45 45 ? ? ? A . n A 1 46 G 46 46 ? ? ? A . n A 1 47 G 47 47 47 G G A . n A 1 48 A 48 48 48 A A A . n A 1 49 A 49 49 49 A A A . n A 1 50 G 50 50 50 G G A . n A 1 51 C 51 51 51 C C A . n A 1 52 C 52 52 52 C C A . n A 1 53 A 53 53 53 A A A . n A 1 54 G 54 54 54 G G A . n A 1 55 A 55 55 55 A A A . n A 1 56 C 56 56 56 C C A . n A 1 57 C 57 57 57 C C A . n A 1 58 A 58 58 58 A A A . n A 1 59 C 59 59 59 C C A . n A 1 60 A 60 60 60 A A A . n A 1 61 C 61 61 61 C C A . n A 1 62 G 62 62 ? ? ? A . n A 1 63 A 63 63 ? ? ? A . n A 1 64 A 64 64 ? ? ? A . n A 1 65 A 65 65 ? ? ? A . n A 1 66 G 66 66 66 G G A . n A 1 67 U 67 67 67 U U A . n A 1 68 G 68 68 68 G G A . n A 1 69 U 69 69 69 U U A . n A 1 70 G 70 70 70 G G A . n A 1 71 G 71 71 71 G G A . n A 1 72 A 72 72 72 A A A . n A 1 73 U 73 73 73 U U A . n A 1 74 U 74 74 74 U U A . n A 1 75 G 75 75 75 G G A . n A 1 76 A 76 76 76 A A A . n A 1 77 C 77 77 77 C C A . n A 1 78 C 78 78 78 C C A . n A 1 79 A 79 79 79 A A A . n A 1 80 G 80 80 80 G G A . n A 1 81 U 81 81 81 U U A . n A 1 82 G 82 82 82 G G A . n A 1 83 G 83 83 83 G G A . n A 1 84 C 84 84 84 C C A . n A 1 85 C 85 85 85 C C A . n A 1 86 C 86 86 86 C C A . n A 1 87 C 87 87 87 C C A . n A 1 88 U 88 88 88 U U A . n A 1 89 C 89 89 89 C C A . n A 1 90 C 90 90 90 C C A . n A 1 91 C 91 91 91 C C A . n A 1 92 U 92 92 92 U U A . n A 1 93 G 93 93 93 G G A . n A 1 94 A 94 94 94 A A A . n A 1 95 A 95 95 95 A A A . n A 1 96 G 96 96 96 G G A . n A 1 97 G 97 97 97 G G A . n A 1 98 U 98 98 98 U U A . n A 1 99 A 99 99 99 A A A . n A 1 100 A 100 100 100 A A A . n A 1 101 A 101 101 101 A A A . n A 1 102 C 102 102 102 C C A . n A 1 103 U 103 103 103 U U A . n A 1 104 U 104 104 104 U U A . n A 1 105 G 105 105 105 G G A . n A 1 106 U 106 106 106 U U A . n A 1 107 A 107 107 107 A A A . n A 1 108 G 108 108 108 G G A . n A 1 109 C 109 109 109 C C A . n A 1 110 G 110 110 110 G G A . n A 1 111 C 111 111 111 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 G 2 2 2 G G B . n B 1 3 G 3 3 3 G G B . n B 1 4 C 4 4 4 C C B . n B 1 5 C 5 5 5 C C B . n B 1 6 A 6 6 6 A A B . n B 1 7 C 7 7 7 C C B . n B 1 8 U 8 8 8 U U B . n B 1 9 G 9 9 9 G G B . n B 1 10 U 10 10 10 U U B . n B 1 11 U 11 11 11 U U B . n B 1 12 C 12 12 ? ? ? B . n B 1 13 U 13 13 13 U U B . n B 1 14 C 14 14 14 C C B . n B 1 15 A 15 15 15 A A B . n B 1 16 C 16 16 16 C C B . n B 1 17 U 17 17 17 U U B . n B 1 18 G 18 18 18 G G B . n B 1 19 U 19 19 19 U U B . n B 1 20 U 20 20 20 U U B . n B 1 21 G 21 21 21 G G B . n B 1 22 C 22 22 22 C C B . n B 1 23 G 23 23 23 G G B . n B 1 24 C 24 24 24 C C B . n B 1 25 U 25 25 25 U U B . n B 1 26 A 26 26 26 A A B . n B 1 27 C 27 27 27 C C B . n B 1 28 A 28 28 28 A A B . n B 1 29 U 29 29 29 U U B . n B 1 30 C 30 30 30 C C B . n B 1 31 U 31 31 31 U U B . n B 1 32 G 32 32 32 G G B . n B 1 33 G 33 33 33 G G B . n B 1 34 C 34 34 34 C C B . n B 1 35 U 35 35 35 U U B . n B 1 36 U 36 36 36 U U B . n B 1 37 U 37 37 ? ? ? B . n B 1 38 U 38 38 ? ? ? B . n B 1 39 C 39 39 ? ? ? B . n B 1 40 G 40 40 ? ? ? B . n B 1 41 G 41 41 ? ? ? B . n B 1 42 A 42 42 ? ? ? B . n B 1 43 A 43 43 ? ? ? B . n B 1 44 A 44 44 ? ? ? B . n B 1 45 U 45 45 ? ? ? B . n B 1 46 G 46 46 ? ? ? B . n B 1 47 G 47 47 47 G G B . n B 1 48 A 48 48 48 A A B . n B 1 49 A 49 49 49 A A B . n B 1 50 G 50 50 50 G G B . n B 1 51 C 51 51 51 C C B . n B 1 52 C 52 52 52 C C B . n B 1 53 A 53 53 53 A A B . n B 1 54 G 54 54 54 G G B . n B 1 55 A 55 55 55 A A B . n B 1 56 C 56 56 56 C C B . n B 1 57 C 57 57 57 C C B . n B 1 58 A 58 58 58 A A B . n B 1 59 C 59 59 59 C C B . n B 1 60 A 60 60 60 A A B . n B 1 61 C 61 61 61 C C B . n B 1 62 G 62 62 ? ? ? B . n B 1 63 A 63 63 ? ? ? B . n B 1 64 A 64 64 ? ? ? B . n B 1 65 A 65 65 ? ? ? B . n B 1 66 G 66 66 66 G G B . n B 1 67 U 67 67 67 U U B . n B 1 68 G 68 68 68 G G B . n B 1 69 U 69 69 69 U U B . n B 1 70 G 70 70 70 G G B . n B 1 71 G 71 71 71 G G B . n B 1 72 A 72 72 72 A A B . n B 1 73 U 73 73 73 U U B . n B 1 74 U 74 74 74 U U B . n B 1 75 G 75 75 75 G G B . n B 1 76 A 76 76 76 A A B . n B 1 77 C 77 77 77 C C B . n B 1 78 C 78 78 78 C C B . n B 1 79 A 79 79 79 A A B . n B 1 80 G 80 80 80 G G B . n B 1 81 U 81 81 81 U U B . n B 1 82 G 82 82 82 G G B . n B 1 83 G 83 83 83 G G B . n B 1 84 C 84 84 84 C C B . n B 1 85 C 85 85 85 C C B . n B 1 86 C 86 86 86 C C B . n B 1 87 C 87 87 87 C C B . n B 1 88 U 88 88 88 U U B . n B 1 89 C 89 89 89 C C B . n B 1 90 C 90 90 90 C C B . n B 1 91 C 91 91 91 C C B . n B 1 92 U 92 92 92 U U B . n B 1 93 G 93 93 93 G G B . n B 1 94 A 94 94 94 A A B . n B 1 95 A 95 95 95 A A B . n B 1 96 G 96 96 96 G G B . n B 1 97 G 97 97 97 G G B . n B 1 98 U 98 98 98 U U B . n B 1 99 A 99 99 99 A A B . n B 1 100 A 100 100 100 A A B . n B 1 101 A 101 101 101 A A B . n B 1 102 C 102 102 102 C C B . n B 1 103 U 103 103 103 U U B . n B 1 104 U 104 104 104 U U B . n B 1 105 G 105 105 105 G G B . n B 1 106 U 106 106 106 U U B . n B 1 107 A 107 107 107 A A B . n B 1 108 G 108 108 108 G G B . n B 1 109 C 109 109 109 C C B . n B 1 110 G 110 110 110 G G B . n B 1 111 C 111 111 111 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K 1 201 2 K K A . D 2 K 1 202 4 K K A . E 3 MG 1 203 3 MG MG A . F 2 K 1 201 1 K K B . G 2 K 1 202 3 K K B . H 3 MG 1 203 4 MG MG B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A U 13 ? P ? A U 13 P 2 1 Y 1 A U 13 ? OP1 ? A U 13 OP1 3 1 Y 1 A U 13 ? OP2 ? A U 13 OP2 4 1 Y 1 B U 13 ? P ? B U 13 P 5 1 Y 1 B U 13 ? OP1 ? B U 13 OP1 6 1 Y 1 B U 13 ? OP2 ? B U 13 OP2 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9DIG _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9DIG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9DIG _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 9DIG _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.007 ? 4526 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.758 ? 7034 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 15.888 ? 2276 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.034 ? 956 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 192 ? f_plane_restr ? ? # _struct.entry_id 9DIG _struct.title 'Rous sarcoma virus frameshifting pseudoknot RNA EM straight dimer' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9DIG _struct_keywords.text 'pseudoknot, retroviral RNA, frameshifting, translation regulation, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 2 ? G N N 2 ? H N N 3 ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code J02342.1 _struct_ref.pdbx_db_accession 210171 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GGGCCACUGUUCUCACUGUUGCGCUACAUCUGGCUAUUCCGCUCAAAUGGAAGCCAGACCACACGCCUGUGUGGAUUGAC CAGUGGCCCCUCCCUGAAGGUAAACUUGUAGCGC ; _struct_ref.pdbx_align_begin 2722 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9DIG A 1 ? 111 ? 210171 2722 ? 2835 ? 1 111 2 1 9DIG B 1 ? 111 ? 210171 2722 ? 2835 ? 1 111 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9DIG U A 36 ? GB 210171 A 2757 conflict 36 1 1 9DIG G A 40 ? GB 210171 C 2761 conflict 40 2 1 9DIG ? A ? ? GB 210171 C 2763 deletion ? 3 1 9DIG ? A ? ? GB 210171 U 2764 deletion ? 4 1 9DIG ? A ? ? GB 210171 C 2765 deletion ? 5 1 9DIG A A 63 ? GB 210171 C 2787 conflict 63 6 1 9DIG A A 64 ? GB 210171 C 2788 conflict 64 7 1 9DIG A A 65 ? GB 210171 U 2789 conflict 65 8 2 9DIG U B 36 ? GB 210171 A 2757 conflict 36 9 2 9DIG G B 40 ? GB 210171 C 2761 conflict 40 10 2 9DIG ? B ? ? GB 210171 C 2763 deletion ? 11 2 9DIG ? B ? ? GB 210171 U 2764 deletion ? 12 2 9DIG ? B ? ? GB 210171 C 2765 deletion ? 13 2 9DIG A B 63 ? GB 210171 C 2787 conflict 63 14 2 9DIG A B 64 ? GB 210171 C 2788 conflict 64 15 2 9DIG A B 65 ? GB 210171 U 2789 conflict 65 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details 'Folded RNA forms a dimer in an ~1:5 dimer:monomer ratio' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 94 OP2 ? ? ? 1_555 C K . K ? ? A A 94 A K 201 1_555 ? ? ? ? ? ? ? 2.552 ? ? metalc2 metalc ? ? B A 94 OP2 ? ? ? 1_555 F K . K ? ? B A 94 B K 201 1_555 ? ? ? ? ? ? ? 2.502 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 86 N3 ? ? A G 1 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 86 O2 ? ? A G 1 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 86 N4 ? ? A G 1 A C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 85 N3 ? ? A G 2 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 85 O2 ? ? A G 2 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 85 N4 ? ? A G 2 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 84 N3 ? ? A G 3 A C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 84 O2 ? ? A G 3 A C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 84 N4 ? ? A G 3 A C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 83 N1 ? ? A C 4 A G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 83 O6 ? ? A C 4 A G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 83 N2 ? ? A C 4 A G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 82 N1 ? ? A C 5 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 82 O6 ? ? A C 5 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 82 N2 ? ? A C 5 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 81 N3 ? ? A A 6 A U 81 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog17 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 80 N1 ? ? A C 7 A G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 80 O6 ? ? A C 7 A G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 80 N2 ? ? A C 7 A G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 79 N1 ? ? A U 8 A A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 79 N6 ? ? A U 8 A A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 78 N3 ? ? A G 9 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 78 O2 ? ? A G 9 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 78 N4 ? ? A G 9 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 10 N3 ? ? ? 1_555 A C 77 N3 ? ? A U 10 A C 77 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog26 hydrog ? ? A U 10 O4 ? ? ? 1_555 A C 77 N4 ? ? A U 10 A C 77 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog27 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 76 N6 ? ? A U 11 A A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog28 hydrog ? ? A U 11 N3 ? ? ? 1_555 A C 77 O2 ? ? A U 11 A C 77 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog29 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 76 N1 ? ? A U 13 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 13 O4 ? ? ? 1_555 A A 76 N6 ? ? A U 13 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 75 N1 ? ? A C 14 A G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 75 O6 ? ? A C 14 A G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 75 N2 ? ? A C 14 A G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 74 N3 ? ? A A 15 A U 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 74 O4 ? ? A A 15 A U 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 16 N3 ? ? ? 1_555 A U 73 N3 ? ? A C 16 A U 73 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog37 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 72 N1 ? ? A U 17 A A 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 17 O4 ? ? ? 1_555 A A 72 N6 ? ? A U 17 A A 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 102 N3 ? ? A G 18 A C 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 102 O2 ? ? A G 18 A C 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 102 N4 ? ? A G 18 A C 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A U 19 N3 ? ? ? 1_555 A A 101 N1 ? ? A U 19 A A 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A U 19 O4 ? ? ? 1_555 A A 101 N6 ? ? A U 19 A A 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A U 20 N3 ? ? ? 1_555 A A 100 N1 ? ? A U 20 A A 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A U 20 O4 ? ? ? 1_555 A A 100 N6 ? ? A U 20 A A 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 21 N1 ? ? ? 1_555 A C 111 N3 ? ? A G 21 A C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 111 O2 ? ? A G 21 A C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 111 N4 ? ? A G 21 A C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 22 N3 ? ? ? 1_555 A G 110 N1 ? ? A C 22 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 22 N4 ? ? ? 1_555 A G 110 O6 ? ? A C 22 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 22 O2 ? ? ? 1_555 A G 110 N2 ? ? A C 22 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 109 N3 ? ? A G 23 A C 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 109 O2 ? ? A G 23 A C 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 109 N4 ? ? A G 23 A C 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 24 N3 ? ? ? 1_555 A G 108 N1 ? ? A C 24 A G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 108 O6 ? ? A C 24 A G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 24 O2 ? ? ? 1_555 A G 108 N2 ? ? A C 24 A G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A U 25 N3 ? ? ? 1_555 A A 107 N1 ? ? A U 25 A A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 25 O4 ? ? ? 1_555 A A 107 N6 ? ? A U 25 A A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A A 26 N1 ? ? ? 1_555 A U 106 N3 ? ? A A 26 A U 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A A 26 N6 ? ? ? 1_555 A U 106 O4 ? ? A A 26 A U 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 105 N1 ? ? A C 27 A G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 105 O6 ? ? A C 27 A G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 105 N2 ? ? A C 27 A G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A A 28 N1 ? ? ? 1_555 A U 104 N3 ? ? A A 28 A U 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A A 28 N6 ? ? ? 1_555 A U 104 O4 ? ? A A 28 A U 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A U 29 N3 ? ? ? 1_555 A U 103 O4 ? ? A U 29 A U 103 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog68 hydrog ? ? A U 29 O2 ? ? ? 1_555 A U 103 N3 ? ? A U 29 A U 103 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog69 hydrog ? ? A C 30 N3 ? ? ? 1_555 A G 54 N1 ? ? A C 30 A G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 30 N4 ? ? ? 1_555 A G 54 O6 ? ? A C 30 A G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 30 O2 ? ? ? 1_555 A G 54 N2 ? ? A C 30 A G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 53 N1 ? ? A U 31 A A 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A U 31 O4 ? ? ? 1_555 A A 53 N6 ? ? A U 31 A A 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 52 N3 ? ? A G 32 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 52 O2 ? ? A G 32 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 52 N4 ? ? A G 32 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 51 N3 ? ? A G 33 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 51 O2 ? ? A G 33 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 51 N4 ? ? A G 33 A C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A C 34 N3 ? ? ? 1_555 A G 50 N1 ? ? A C 34 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A C 34 N4 ? ? ? 1_555 A G 50 O6 ? ? A C 34 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A C 34 O2 ? ? ? 1_555 A G 50 N2 ? ? A C 34 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A U 35 N3 ? ? ? 1_555 A A 49 N1 ? ? A U 35 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A U 35 O4 ? ? ? 1_555 A A 49 N6 ? ? A U 35 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A U 36 N3 ? ? ? 1_555 A A 48 N1 ? ? A U 36 A A 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A U 36 O4 ? ? ? 1_555 A A 48 N6 ? ? A U 36 A A 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A C 56 N3 ? ? ? 1_555 A G 71 N1 ? ? A C 56 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A C 56 N4 ? ? ? 1_555 A G 71 O6 ? ? A C 56 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A C 56 O2 ? ? ? 1_555 A G 71 N2 ? ? A C 56 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A C 57 N3 ? ? ? 1_555 A G 70 N1 ? ? A C 57 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A C 57 N4 ? ? ? 1_555 A G 70 O6 ? ? A C 57 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A C 57 O2 ? ? ? 1_555 A G 70 N2 ? ? A C 57 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A A 58 N1 ? ? ? 1_555 A U 69 N3 ? ? A A 58 A U 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A A 58 N6 ? ? ? 1_555 A U 69 O4 ? ? A A 58 A U 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A C 59 N3 ? ? ? 1_555 A G 68 N1 ? ? A C 59 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A C 59 N4 ? ? ? 1_555 A G 68 O6 ? ? A C 59 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A C 59 O2 ? ? ? 1_555 A G 68 N2 ? ? A C 59 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A A 60 N1 ? ? ? 1_555 A U 67 N3 ? ? A A 60 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A A 60 N6 ? ? ? 1_555 A U 67 O4 ? ? A A 60 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A C 61 N3 ? ? ? 1_555 A G 66 N1 ? ? A C 61 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A C 61 N4 ? ? ? 1_555 A G 66 O6 ? ? A C 61 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A C 61 O2 ? ? ? 1_555 A G 66 N2 ? ? A C 61 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A C 61 N3 ? ? ? 1_555 A U 67 N3 ? ? A C 61 A U 67 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog104 hydrog ? ? A C 61 N4 ? ? ? 1_555 A U 67 O4 ? ? A C 61 A U 67 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog105 hydrog ? ? A U 88 N3 ? ? ? 1_555 B U 98 O2 ? ? A U 88 B U 98 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog106 hydrog ? ? A U 88 O4 ? ? ? 1_555 B U 98 N3 ? ? A U 88 B U 98 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog107 hydrog ? ? A C 89 N3 ? ? ? 1_555 B G 97 N1 ? ? A C 89 B G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A C 89 N4 ? ? ? 1_555 B G 97 O6 ? ? A C 89 B G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A C 89 O2 ? ? ? 1_555 B G 97 N2 ? ? A C 89 B G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A C 90 N3 ? ? ? 1_555 B G 96 N1 ? ? A C 90 B G 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A C 90 N4 ? ? ? 1_555 B G 96 O6 ? ? A C 90 B G 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A C 90 O2 ? ? ? 1_555 B G 96 N2 ? ? A C 90 B G 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? A C 91 O2 ? ? ? 1_555 B A 95 N6 ? ? A C 91 B A 95 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog114 hydrog ? ? A A 95 N6 ? ? ? 1_555 B C 91 O2 ? ? A A 95 B C 91 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog115 hydrog ? ? A G 96 N1 ? ? ? 1_555 B C 90 N3 ? ? A G 96 B C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? A G 96 N2 ? ? ? 1_555 B C 90 O2 ? ? A G 96 B C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? A G 96 O6 ? ? ? 1_555 B C 90 N4 ? ? A G 96 B C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? A G 97 N1 ? ? ? 1_555 B C 89 N3 ? ? A G 97 B C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? A G 97 N2 ? ? ? 1_555 B C 89 O2 ? ? A G 97 B C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? A G 97 O6 ? ? ? 1_555 B C 89 N4 ? ? A G 97 B C 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? A U 98 N3 ? ? ? 1_555 B U 88 O4 ? ? A U 98 B U 88 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog122 hydrog ? ? A U 98 O2 ? ? ? 1_555 B U 88 N3 ? ? A U 98 B U 88 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog123 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 86 N3 ? ? B G 1 B C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 86 O2 ? ? B G 1 B C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 86 N4 ? ? B G 1 B C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 85 N3 ? ? B G 2 B C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 85 O2 ? ? B G 2 B C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 85 N4 ? ? B G 2 B C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 84 N3 ? ? B G 3 B C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 84 O2 ? ? B G 3 B C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 84 N4 ? ? B G 3 B C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? B C 4 N3 ? ? ? 1_555 B G 83 N1 ? ? B C 4 B G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? B C 4 N4 ? ? ? 1_555 B G 83 O6 ? ? B C 4 B G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? B C 4 O2 ? ? ? 1_555 B G 83 N2 ? ? B C 4 B G 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 82 N1 ? ? B C 5 B G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog136 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 82 O6 ? ? B C 5 B G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog137 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 82 N2 ? ? B C 5 B G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog138 hydrog ? ? B A 6 N1 ? ? ? 1_555 B U 81 N3 ? ? B A 6 B U 81 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog139 hydrog ? ? B C 7 N3 ? ? ? 1_555 B G 80 N1 ? ? B C 7 B G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? B C 7 N4 ? ? ? 1_555 B G 80 O6 ? ? B C 7 B G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog141 hydrog ? ? B C 7 O2 ? ? ? 1_555 B G 80 N2 ? ? B C 7 B G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 79 N1 ? ? B U 8 B A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 79 N6 ? ? B U 8 B A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog144 hydrog ? ? B G 9 N1 ? ? ? 1_555 B C 78 N3 ? ? B G 9 B C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog145 hydrog ? ? B G 9 N2 ? ? ? 1_555 B C 78 O2 ? ? B G 9 B C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog146 hydrog ? ? B G 9 O6 ? ? ? 1_555 B C 78 N4 ? ? B G 9 B C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog147 hydrog ? ? B U 10 N3 ? ? ? 1_555 B C 77 N3 ? ? B U 10 B C 77 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog148 hydrog ? ? B U 10 O4 ? ? ? 1_555 B C 77 N4 ? ? B U 10 B C 77 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog149 hydrog ? ? B U 11 O4 ? ? ? 1_555 B A 76 N6 ? ? B U 11 B A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog150 hydrog ? ? B U 11 N3 ? ? ? 1_555 B C 77 O2 ? ? B U 11 B C 77 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog151 hydrog ? ? B U 13 N3 ? ? ? 1_555 B A 76 N1 ? ? B U 13 B A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog152 hydrog ? ? B U 13 O4 ? ? ? 1_555 B A 76 N6 ? ? B U 13 B A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog153 hydrog ? ? B C 14 N3 ? ? ? 1_555 B G 75 N1 ? ? B C 14 B G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog154 hydrog ? ? B C 14 N4 ? ? ? 1_555 B G 75 O6 ? ? B C 14 B G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog155 hydrog ? ? B C 14 O2 ? ? ? 1_555 B G 75 N2 ? ? B C 14 B G 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog156 hydrog ? ? B A 15 N1 ? ? ? 1_555 B U 74 N3 ? ? B A 15 B U 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog157 hydrog ? ? B A 15 N6 ? ? ? 1_555 B U 74 O4 ? ? B A 15 B U 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog158 hydrog ? ? B C 16 N3 ? ? ? 1_555 B U 73 N3 ? ? B C 16 B U 73 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog159 hydrog ? ? B U 17 N3 ? ? ? 1_555 B A 72 N1 ? ? B U 17 B A 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog160 hydrog ? ? B U 17 O4 ? ? ? 1_555 B A 72 N6 ? ? B U 17 B A 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog161 hydrog ? ? B G 18 N1 ? ? ? 1_555 B C 102 N3 ? ? B G 18 B C 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog162 hydrog ? ? B G 18 N2 ? ? ? 1_555 B C 102 O2 ? ? B G 18 B C 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog163 hydrog ? ? B G 18 O6 ? ? ? 1_555 B C 102 N4 ? ? B G 18 B C 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog164 hydrog ? ? B U 19 N3 ? ? ? 1_555 B A 101 N1 ? ? B U 19 B A 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog165 hydrog ? ? B U 19 O4 ? ? ? 1_555 B A 101 N6 ? ? B U 19 B A 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog166 hydrog ? ? B U 20 N3 ? ? ? 1_555 B A 100 N1 ? ? B U 20 B A 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog167 hydrog ? ? B U 20 O4 ? ? ? 1_555 B A 100 N6 ? ? B U 20 B A 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog168 hydrog ? ? B G 21 N1 ? ? ? 1_555 B C 111 N3 ? ? B G 21 B C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog169 hydrog ? ? B G 21 N2 ? ? ? 1_555 B C 111 O2 ? ? B G 21 B C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog170 hydrog ? ? B G 21 O6 ? ? ? 1_555 B C 111 N4 ? ? B G 21 B C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog171 hydrog ? ? B C 22 N3 ? ? ? 1_555 B G 110 N1 ? ? B C 22 B G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog172 hydrog ? ? B C 22 N4 ? ? ? 1_555 B G 110 O6 ? ? B C 22 B G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog173 hydrog ? ? B C 22 O2 ? ? ? 1_555 B G 110 N2 ? ? B C 22 B G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog174 hydrog ? ? B G 23 N1 ? ? ? 1_555 B C 109 N3 ? ? B G 23 B C 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog175 hydrog ? ? B G 23 N2 ? ? ? 1_555 B C 109 O2 ? ? B G 23 B C 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog176 hydrog ? ? B G 23 O6 ? ? ? 1_555 B C 109 N4 ? ? B G 23 B C 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog177 hydrog ? ? B C 24 N3 ? ? ? 1_555 B G 108 N1 ? ? B C 24 B G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog178 hydrog ? ? B C 24 N4 ? ? ? 1_555 B G 108 O6 ? ? B C 24 B G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog179 hydrog ? ? B C 24 O2 ? ? ? 1_555 B G 108 N2 ? ? B C 24 B G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog180 hydrog ? ? B U 25 N3 ? ? ? 1_555 B A 107 N1 ? ? B U 25 B A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog181 hydrog ? ? B U 25 O4 ? ? ? 1_555 B A 107 N6 ? ? B U 25 B A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog182 hydrog ? ? B A 26 N1 ? ? ? 1_555 B U 106 N3 ? ? B A 26 B U 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog183 hydrog ? ? B A 26 N6 ? ? ? 1_555 B U 106 O4 ? ? B A 26 B U 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog184 hydrog ? ? B C 27 N3 ? ? ? 1_555 B G 105 N1 ? ? B C 27 B G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog185 hydrog ? ? B C 27 N4 ? ? ? 1_555 B G 105 O6 ? ? B C 27 B G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog186 hydrog ? ? B C 27 O2 ? ? ? 1_555 B G 105 N2 ? ? B C 27 B G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog187 hydrog ? ? B A 28 N1 ? ? ? 1_555 B U 104 N3 ? ? B A 28 B U 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog188 hydrog ? ? B A 28 N6 ? ? ? 1_555 B U 104 O4 ? ? B A 28 B U 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog189 hydrog ? ? B U 29 N3 ? ? ? 1_555 B U 103 O4 ? ? B U 29 B U 103 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog190 hydrog ? ? B U 29 O2 ? ? ? 1_555 B U 103 N3 ? ? B U 29 B U 103 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog191 hydrog ? ? B C 30 N3 ? ? ? 1_555 B G 54 N1 ? ? B C 30 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog192 hydrog ? ? B C 30 N4 ? ? ? 1_555 B G 54 O6 ? ? B C 30 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog193 hydrog ? ? B C 30 O2 ? ? ? 1_555 B G 54 N2 ? ? B C 30 B G 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog194 hydrog ? ? B U 31 N3 ? ? ? 1_555 B A 53 N1 ? ? B U 31 B A 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog195 hydrog ? ? B U 31 O4 ? ? ? 1_555 B A 53 N6 ? ? B U 31 B A 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog196 hydrog ? ? B G 32 N1 ? ? ? 1_555 B C 52 N3 ? ? B G 32 B C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog197 hydrog ? ? B G 32 N2 ? ? ? 1_555 B C 52 O2 ? ? B G 32 B C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog198 hydrog ? ? B G 32 O6 ? ? ? 1_555 B C 52 N4 ? ? B G 32 B C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog199 hydrog ? ? B G 33 N1 ? ? ? 1_555 B C 51 N3 ? ? B G 33 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog200 hydrog ? ? B G 33 N2 ? ? ? 1_555 B C 51 O2 ? ? B G 33 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog201 hydrog ? ? B G 33 O6 ? ? ? 1_555 B C 51 N4 ? ? B G 33 B C 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog202 hydrog ? ? B C 34 N3 ? ? ? 1_555 B G 50 N1 ? ? B C 34 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog203 hydrog ? ? B C 34 N4 ? ? ? 1_555 B G 50 O6 ? ? B C 34 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog204 hydrog ? ? B C 34 O2 ? ? ? 1_555 B G 50 N2 ? ? B C 34 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog205 hydrog ? ? B U 35 N3 ? ? ? 1_555 B A 49 N1 ? ? B U 35 B A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog206 hydrog ? ? B U 35 O4 ? ? ? 1_555 B A 49 N6 ? ? B U 35 B A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog207 hydrog ? ? B U 36 N3 ? ? ? 1_555 B A 48 N1 ? ? B U 36 B A 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog208 hydrog ? ? B U 36 O4 ? ? ? 1_555 B A 48 N6 ? ? B U 36 B A 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog209 hydrog ? ? B C 56 N3 ? ? ? 1_555 B G 71 N1 ? ? B C 56 B G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog210 hydrog ? ? B C 56 N4 ? ? ? 1_555 B G 71 O6 ? ? B C 56 B G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog211 hydrog ? ? B C 56 O2 ? ? ? 1_555 B G 71 N2 ? ? B C 56 B G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog212 hydrog ? ? B C 57 N3 ? ? ? 1_555 B G 70 N1 ? ? B C 57 B G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog213 hydrog ? ? B C 57 N4 ? ? ? 1_555 B G 70 O6 ? ? B C 57 B G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog214 hydrog ? ? B C 57 O2 ? ? ? 1_555 B G 70 N2 ? ? B C 57 B G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog215 hydrog ? ? B A 58 N1 ? ? ? 1_555 B U 69 N3 ? ? B A 58 B U 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog216 hydrog ? ? B A 58 N6 ? ? ? 1_555 B U 69 O4 ? ? B A 58 B U 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog217 hydrog ? ? B C 59 N3 ? ? ? 1_555 B G 68 N1 ? ? B C 59 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog218 hydrog ? ? B C 59 N4 ? ? ? 1_555 B G 68 O6 ? ? B C 59 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog219 hydrog ? ? B C 59 O2 ? ? ? 1_555 B G 68 N2 ? ? B C 59 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog220 hydrog ? ? B A 60 N1 ? ? ? 1_555 B U 67 N3 ? ? B A 60 B U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog221 hydrog ? ? B A 60 N6 ? ? ? 1_555 B U 67 O4 ? ? B A 60 B U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog222 hydrog ? ? B C 61 N3 ? ? ? 1_555 B G 66 N1 ? ? B C 61 B G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog223 hydrog ? ? B C 61 N4 ? ? ? 1_555 B G 66 O6 ? ? B C 61 B G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog224 hydrog ? ? B C 61 O2 ? ? ? 1_555 B G 66 N2 ? ? B C 61 B G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog225 hydrog ? ? B C 61 N3 ? ? ? 1_555 B U 67 N3 ? ? B C 61 B U 67 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog226 hydrog ? ? B C 61 N4 ? ? ? 1_555 B U 67 O4 ? ? B C 61 B U 67 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _pdbx_entry_details.entry_id 9DIG _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N4 A C 16 ? ? O4 A U 73 ? ? 2.13 2 1 N4 B C 16 ? ? O4 B U 73 ? ? 2.13 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9DIG _em_3d_fitting.method ? _em_3d_fitting.target_criteria 'Cross-correlation coefficient' _em_3d_fitting.details ;Phenix real-space refinement, using real-space refinement, simulated annealing on the first step, B-factor, occupancy, and global minimization with NCS and secondary structure restraints ; _em_3d_fitting.overall_b_value 116.7 _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol OTHER # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 9DIB _em_3d_fitting_list.pdb_chain_id B _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.details 'Two copies of B were placed' _em_3d_fitting_list.chain_id B _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 9DIB _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 9DIG _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.22 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 88523 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '25 mM HEPES-KOH, pH 7.4, 150 mM KCl, 10 mM MgCl2' _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Dimeric RNA' _em_entity_assembly.details 'Folded RNA specimen prepared by in vitro transcription' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9DIG _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'SPOT SCAN' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type Quantifoil _em_sample_support.details 'Pelco easiGlow from Ted Pella (Redding, CA)' _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9DIG _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK I' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9DIG _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 9DIG _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A C 12 ? A C 12 2 1 Y 1 A U 37 ? A U 37 3 1 Y 1 A U 38 ? A U 38 4 1 Y 1 A C 39 ? A C 39 5 1 Y 1 A G 40 ? A G 40 6 1 Y 1 A G 41 ? A G 41 7 1 Y 1 A A 42 ? A A 42 8 1 Y 1 A A 43 ? A A 43 9 1 Y 1 A A 44 ? A A 44 10 1 Y 1 A U 45 ? A U 45 11 1 Y 1 A G 46 ? A G 46 12 1 Y 1 A G 62 ? A G 62 13 1 Y 1 A A 63 ? A A 63 14 1 Y 1 A A 64 ? A A 64 15 1 Y 1 A A 65 ? A A 65 16 1 Y 1 B C 12 ? B C 12 17 1 Y 1 B U 37 ? B U 37 18 1 Y 1 B U 38 ? B U 38 19 1 Y 1 B C 39 ? B C 39 20 1 Y 1 B G 40 ? B G 40 21 1 Y 1 B G 41 ? B G 41 22 1 Y 1 B A 42 ? B A 42 23 1 Y 1 B A 43 ? B A 43 24 1 Y 1 B A 44 ? B A 44 25 1 Y 1 B U 45 ? B U 45 26 1 Y 1 B G 46 ? B G 46 27 1 Y 1 B G 62 ? B G 62 28 1 Y 1 B A 63 ? B A 63 29 1 Y 1 B A 64 ? B A 64 30 1 Y 1 B A 65 ? B A 65 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 K K K N N 111 MG MG MG N N 112 U OP3 O N N 113 U P P N N 114 U OP1 O N N 115 U OP2 O N N 116 U "O5'" O N N 117 U "C5'" C N N 118 U "C4'" C N R 119 U "O4'" O N N 120 U "C3'" C N S 121 U "O3'" O N N 122 U "C2'" C N R 123 U "O2'" O N N 124 U "C1'" C N R 125 U N1 N N N 126 U C2 C N N 127 U O2 O N N 128 U N3 N N N 129 U C4 C N N 130 U O4 O N N 131 U C5 C N N 132 U C6 C N N 133 U HOP3 H N N 134 U HOP2 H N N 135 U "H5'" H N N 136 U "H5''" H N N 137 U "H4'" H N N 138 U "H3'" H N N 139 U "HO3'" H N N 140 U "H2'" H N N 141 U "HO2'" H N N 142 U "H1'" H N N 143 U H3 H N N 144 U H5 H N N 145 U H6 H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # _em_admin.current_status REL _em_admin.deposition_date 2024-09-05 _em_admin.deposition_site RCSB _em_admin.entry_id 9DIG _em_admin.last_update 2025-04-16 _em_admin.map_release_date 2025-04-09 _em_admin.title 'Rous sarcoma virus frameshifting pseudoknot RNA EM straight dimer' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 11888 _em_entity_assembly_naturalsource.organism 'Rous sarcoma virus - Prague C' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 905931 _em_entity_assembly_recombinant.organism 'in vitro transcription vector pT7-TP(deltai)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 54.4 _em_image_recording.details '7874 curated micrographs' _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 7874 # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 3400000 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? Topaz ? 'IMAGE ACQUISITION' ? 2 ? ? 1 SerialEM ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND 4.1 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot ? OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? cryoSPARC ? 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC ? CLASSIFICATION ? 11 1 ? ? RELION ? RECONSTRUCTION ? 12 1 ? ? cryoSPARC ? 'MODEL REFINEMENT' ? 13 ? 1 ? PHENIX ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9DIG 'double helix' 9DIG 'a-form double helix' 9DIG 'hairpin loop' 9DIG 'bulge loop' 9DIG 'mismatched base pair' 9DIG 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 18 1_555 A C 102 1_555 -0.245 -0.208 0.601 0.690 4.032 0.752 1 A_G18:C102_A A 18 ? A 102 ? 19 1 1 A U 19 1_555 A A 101 1_555 -0.247 -0.109 0.708 0.994 4.983 -2.812 2 A_U19:A101_A A 19 ? A 101 ? 20 1 1 A U 20 1_555 A A 100 1_555 -0.126 -0.174 0.836 2.814 1.695 -8.305 3 A_U20:A100_A A 20 ? A 100 ? 20 1 1 A A 48 1_555 A U 36 1_555 0.150 -0.783 1.781 -4.433 2.231 0.222 4 A_A48:U36_A A 48 ? A 36 ? 20 1 1 A A 49 1_555 A U 35 1_555 0.037 -0.667 1.641 -4.169 3.976 -3.426 5 A_A49:U35_A A 49 ? A 35 ? 20 1 1 A G 50 1_555 A C 34 1_555 -0.153 -0.518 1.307 -4.304 2.064 0.129 6 A_G50:C34_A A 50 ? A 34 ? 19 1 1 A C 51 1_555 A G 33 1_555 0.155 -0.240 0.493 1.094 2.080 -0.169 7 A_C51:G33_A A 51 ? A 33 ? 19 1 1 A C 52 1_555 A G 32 1_555 0.133 -0.174 -0.072 2.276 4.808 -0.081 8 A_C52:G32_A A 52 ? A 32 ? 19 1 1 A A 53 1_555 A U 31 1_555 -0.011 -0.101 0.125 7.678 -4.040 5.602 9 A_A53:U31_A A 53 ? A 31 ? 20 1 1 A G 54 1_555 A C 30 1_555 -0.196 -0.214 -0.434 -0.279 11.846 -2.182 10 A_G54:C30_A A 54 ? A 30 ? 19 1 1 A U 103 1_555 A U 29 1_555 -2.797 -1.531 -1.114 -29.212 -9.525 12.446 11 A_U103:U29_A A 103 ? A 29 ? 16 1 1 A U 104 1_555 A A 28 1_555 0.035 -0.081 -0.451 -8.529 8.309 1.878 12 A_U104:A28_A A 104 ? A 28 ? 20 1 1 A G 105 1_555 A C 27 1_555 -0.223 -0.151 -0.183 -2.608 0.169 3.776 13 A_G105:C27_A A 105 ? A 27 ? 19 1 1 A U 106 1_555 A A 26 1_555 -0.092 -0.127 -0.297 -0.795 2.162 2.158 14 A_U106:A26_A A 106 ? A 26 ? 20 1 1 A A 107 1_555 A U 25 1_555 0.020 -0.112 -0.124 -9.212 7.696 3.930 15 A_A107:U25_A A 107 ? A 25 ? 20 1 1 A G 108 1_555 A C 24 1_555 -0.157 -0.249 0.337 -3.996 8.228 1.777 16 A_G108:C24_A A 108 ? A 24 ? 19 1 1 A C 109 1_555 A G 23 1_555 0.215 -0.168 0.315 3.256 8.606 3.216 17 A_C109:G23_A A 109 ? A 23 ? 19 1 1 A G 110 1_555 A C 22 1_555 -0.187 -0.257 -0.633 8.930 4.777 -0.095 18 A_G110:C22_A A 110 ? A 22 ? 19 1 1 A C 111 1_555 A G 21 1_555 0.192 -0.198 -1.199 17.099 0.266 0.381 19 A_C111:G21_A A 111 ? A 21 ? 19 1 1 B G 1 1_555 B C 86 1_555 -0.124 -0.241 0.779 6.823 9.347 -1.053 20 B_G1:C86_B B 1 ? B 86 ? 19 1 1 B G 2 1_555 B C 85 1_555 -0.227 -0.138 -0.545 -3.937 0.164 -0.834 21 B_G2:C85_B B 2 ? B 85 ? 19 1 1 B G 3 1_555 B C 84 1_555 -0.155 -0.119 -0.435 -3.380 -1.113 1.212 22 B_G3:C84_B B 3 ? B 84 ? 19 1 1 B C 4 1_555 B G 83 1_555 0.224 -0.090 -0.190 1.201 -3.802 3.902 23 B_C4:G83_B B 4 ? B 83 ? 19 1 1 B C 5 1_555 B G 82 1_555 0.155 -0.079 0.137 0.931 -3.305 0.707 24 B_C5:G82_B B 5 ? B 82 ? 19 1 1 B A 6 1_555 B U 81 1_555 -1.628 0.242 0.404 13.393 1.972 18.429 25 B_A6:U81_B B 6 ? B 81 ? ? 1 1 B C 7 1_555 B G 80 1_555 0.122 -0.220 -0.083 5.716 0.883 -0.134 26 B_C7:G80_B B 7 ? B 80 ? 19 1 1 B U 8 1_555 B A 79 1_555 -0.127 -0.042 -0.140 -1.703 -4.610 1.024 27 B_U8:A79_B B 8 ? B 79 ? 20 1 1 B G 9 1_555 B C 78 1_555 -0.124 -0.157 0.298 -2.283 -1.648 0.350 28 B_G9:C78_B B 9 ? B 78 ? 19 1 1 B U 10 1_555 B C 77 1_555 -1.225 -1.609 0.254 -1.629 -2.543 -3.064 29 B_U10:C77_B B 10 ? B 77 ? 18 1 1 B U 13 1_555 B A 76 1_555 0.002 -0.666 1.550 10.414 4.746 3.903 30 B_U13:A76_B B 13 ? B 76 ? 20 1 1 B C 14 1_555 B G 75 1_555 0.145 -0.332 0.931 3.892 1.520 1.147 31 B_C14:G75_B B 14 ? B 75 ? 19 1 1 B A 15 1_555 B U 74 1_555 0.055 -0.092 -0.457 -3.794 -4.235 -1.944 32 B_A15:U74_B B 15 ? B 74 ? 20 1 1 B C 16 1_555 B U 73 1_555 0.483 -1.057 0.121 -4.610 -6.727 -27.735 33 B_C16:U73_B B 16 ? B 73 ? ? ? 1 B U 17 1_555 B A 72 1_555 -0.237 -0.072 0.945 -3.368 -1.838 -6.344 34 B_U17:A72_B B 17 ? B 72 ? 20 1 1 B C 56 1_555 B G 71 1_555 0.138 -0.313 0.877 3.004 2.753 -1.030 35 B_C56:G71_B B 56 ? B 71 ? 19 1 1 B C 57 1_555 B G 70 1_555 0.162 -0.250 0.315 6.446 -6.611 -4.630 36 B_C57:G70_B B 57 ? B 70 ? 19 1 1 B A 58 1_555 B U 69 1_555 0.001 -0.140 0.101 11.225 16.976 -2.534 37 B_A58:U69_B B 58 ? B 69 ? 20 1 1 B C 59 1_555 B G 68 1_555 0.336 -0.282 -0.902 0.800 -7.362 7.242 38 B_C59:G68_B B 59 ? B 68 ? 19 1 1 B A 60 1_555 B U 67 1_555 0.347 -0.644 -1.566 -4.389 4.269 -5.664 39 B_A60:U67_B B 60 ? B 67 ? 20 1 1 B C 61 1_555 B G 66 1_555 0.090 -0.388 -1.038 5.660 5.306 -2.521 40 B_C61:G66_B B 61 ? B 66 ? 19 1 1 A G 66 1_555 A C 61 1_555 -0.091 -0.388 -1.038 -5.653 5.304 -2.515 41 A_G66:C61_A A 66 ? A 61 ? 19 1 1 A U 67 1_555 A A 60 1_555 -0.348 -0.644 -1.567 4.407 4.267 -5.678 42 A_U67:A60_A A 67 ? A 60 ? 20 1 1 A G 68 1_555 A C 59 1_555 -0.337 -0.282 -0.902 -0.834 -7.387 7.263 43 A_G68:C59_A A 68 ? A 59 ? 19 1 1 A U 69 1_555 A A 58 1_555 0.000 -0.141 0.100 -11.196 16.951 -2.524 44 A_U69:A58_A A 69 ? A 58 ? 20 1 1 A G 70 1_555 A C 57 1_555 -0.162 -0.249 0.315 -6.432 -6.624 -4.638 45 A_G70:C57_A A 70 ? A 57 ? 19 1 1 A G 71 1_555 A C 56 1_555 -0.138 -0.314 0.877 -2.991 2.716 -1.028 46 A_G71:C56_A A 71 ? A 56 ? 19 1 1 A A 72 1_555 A U 17 1_555 0.236 -0.072 0.944 3.356 -1.835 -6.323 47 A_A72:U17_A A 72 ? A 17 ? 20 1 1 A U 73 1_555 A C 16 1_555 -0.483 -1.057 0.122 4.625 -6.715 -27.751 48 A_U73:C16_A A 73 ? A 16 ? ? ? 1 A U 74 1_555 A A 15 1_555 -0.055 -0.092 -0.456 3.793 -4.251 -1.937 49 A_U74:A15_A A 74 ? A 15 ? 20 1 1 A G 75 1_555 A C 14 1_555 -0.144 -0.332 0.932 -3.880 1.537 1.132 50 A_G75:C14_A A 75 ? A 14 ? 19 1 1 A A 76 1_555 A U 13 1_555 -0.001 -0.666 1.550 -10.426 4.733 3.895 51 A_A76:U13_A A 76 ? A 13 ? 20 1 1 A C 77 1_555 A U 10 1_555 1.224 -1.609 0.253 1.613 -2.555 -3.052 52 A_C77:U10_A A 77 ? A 10 ? 18 1 1 A C 78 1_555 A G 9 1_555 0.125 -0.156 0.299 2.279 -1.666 0.364 53 A_C78:G9_A A 78 ? A 9 ? 19 1 1 A A 79 1_555 A U 8 1_555 0.127 -0.042 -0.140 1.692 -4.641 1.030 54 A_A79:U8_A A 79 ? A 8 ? 20 1 1 A G 80 1_555 A C 7 1_555 -0.122 -0.220 -0.084 -5.736 0.897 -0.143 55 A_G80:C7_A A 80 ? A 7 ? 19 1 1 A U 81 1_555 A A 6 1_555 1.628 0.242 0.404 -13.416 1.988 18.441 56 A_U81:A6_A A 81 ? A 6 ? ? 1 1 A G 82 1_555 A C 5 1_555 -0.156 -0.079 0.135 -0.931 -3.290 0.709 57 A_G82:C5_A A 82 ? A 5 ? 19 1 1 A G 83 1_555 A C 4 1_555 -0.223 -0.090 -0.190 -1.218 -3.820 3.895 58 A_G83:C4_A A 83 ? A 4 ? 19 1 1 A C 84 1_555 A G 3 1_555 0.154 -0.119 -0.434 3.376 -1.123 1.203 59 A_C84:G3_A A 84 ? A 3 ? 19 1 1 A C 85 1_555 A G 2 1_555 0.227 -0.138 -0.546 3.940 0.177 -0.849 60 A_C85:G2_A A 85 ? A 2 ? 19 1 1 A C 86 1_555 A G 1 1_555 0.124 -0.241 0.778 -6.830 9.348 -1.024 61 A_C86:G1_A A 86 ? A 1 ? 19 1 1 B G 21 1_555 B C 111 1_555 -0.192 -0.198 -1.198 -17.094 0.263 0.379 62 B_G21:C111_B B 21 ? B 111 ? 19 1 1 B C 22 1_555 B G 110 1_555 0.187 -0.257 -0.632 -8.970 4.772 -0.092 63 B_C22:G110_B B 22 ? B 110 ? 19 1 1 B G 23 1_555 B C 109 1_555 -0.214 -0.168 0.316 -3.251 8.578 3.205 64 B_G23:C109_B B 23 ? B 109 ? 19 1 1 B C 24 1_555 B G 108 1_555 0.155 -0.248 0.338 3.977 8.215 1.767 65 B_C24:G108_B B 24 ? B 108 ? 19 1 1 B U 25 1_555 B A 107 1_555 -0.020 -0.111 -0.124 9.200 7.697 3.943 66 B_U25:A107_B B 25 ? B 107 ? 20 1 1 B A 26 1_555 B U 106 1_555 0.092 -0.127 -0.296 0.796 2.153 2.157 67 B_A26:U106_B B 26 ? B 106 ? 20 1 1 B C 27 1_555 B G 105 1_555 0.223 -0.151 -0.184 2.611 0.142 3.775 68 B_C27:G105_B B 27 ? B 105 ? 19 1 1 B A 28 1_555 B U 104 1_555 -0.035 -0.081 -0.451 8.541 8.326 1.876 69 B_A28:U104_B B 28 ? B 104 ? 20 1 1 B U 29 1_555 B U 103 1_555 2.797 -1.532 -1.117 29.183 -9.525 12.421 70 B_U29:U103_B B 29 ? B 103 ? 16 1 1 B C 30 1_555 B G 54 1_555 0.197 -0.214 -0.435 0.298 11.831 -2.180 71 B_C30:G54_B B 30 ? B 54 ? 19 1 1 B U 31 1_555 B A 53 1_555 0.011 -0.100 0.127 -7.675 -4.032 5.625 72 B_U31:A53_B B 31 ? B 53 ? 20 1 1 B G 32 1_555 B C 52 1_555 -0.132 -0.175 -0.073 -2.280 4.768 -0.077 73 B_G32:C52_B B 32 ? B 52 ? 19 1 1 B G 33 1_555 B C 51 1_555 -0.155 -0.241 0.494 -1.077 2.071 -0.185 74 B_G33:C51_B B 33 ? B 51 ? 19 1 1 B C 34 1_555 B G 50 1_555 0.153 -0.518 1.308 4.307 2.084 0.122 75 B_C34:G50_B B 34 ? B 50 ? 19 1 1 B U 35 1_555 B A 49 1_555 -0.037 -0.667 1.641 4.166 3.975 -3.387 76 B_U35:A49_B B 35 ? B 49 ? 20 1 1 B U 36 1_555 B A 48 1_555 -0.151 -0.783 1.779 4.446 2.234 0.232 77 B_U36:A48_B B 36 ? B 48 ? 20 1 1 A U 88 1_555 B U 98 1_555 -3.796 -1.744 -1.224 -22.280 8.883 -3.316 78 A_U88:U98_B A 88 ? B 98 ? 16 1 1 A C 89 1_555 B G 97 1_555 0.250 -0.213 -0.649 0.570 12.040 0.428 79 A_C89:G97_B A 89 ? B 97 ? 19 1 1 A C 90 1_555 B G 96 1_555 0.161 -0.261 -0.359 -0.776 0.722 -0.722 80 A_C90:G96_B A 90 ? B 96 ? 19 1 1 A C 91 1_555 B A 95 1_555 6.668 -2.369 0.195 -10.975 8.008 0.904 81 A_C91:A95_B A 91 ? B 95 ? ? ? 1 A A 95 1_555 B C 91 1_555 -6.719 -2.305 0.174 11.032 7.919 0.916 82 A_A95:C91_B A 95 ? B 91 ? ? ? 1 A G 96 1_555 B C 90 1_555 -0.137 -0.181 -0.376 0.711 0.648 -0.705 83 A_G96:C90_B A 96 ? B 90 ? 19 1 1 A G 97 1_555 B C 89 1_555 -0.192 -0.149 -0.656 -0.662 11.980 0.430 84 A_G97:C89_B A 97 ? B 89 ? 19 1 1 A U 98 1_555 B U 88 1_555 3.884 -1.739 -1.228 22.230 8.890 -3.328 85 A_U98:U88_B A 98 ? B 88 ? 16 1 1 B G 18 1_555 B C 102 1_555 -0.246 -0.208 0.600 0.664 4.049 0.766 86 B_G18:C102_B B 18 ? B 102 ? 19 1 1 B U 19 1_555 B A 101 1_555 -0.246 -0.109 0.709 0.995 4.999 -2.796 87 B_U19:A101_B B 19 ? B 101 ? 20 1 1 B U 20 1_555 B A 100 1_555 -0.125 -0.174 0.835 2.801 1.708 -8.296 88 B_U20:A100_B B 20 ? B 100 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 18 1_555 A C 102 1_555 A U 19 1_555 A A 101 1_555 -0.488 -1.940 3.154 -0.223 2.606 35.005 -3.584 0.777 3.010 4.325 0.369 35.099 1 AA_G18U19:A101C102_AA A 18 ? A 102 ? A 19 ? A 101 ? 1 A U 19 1_555 A A 101 1_555 A U 20 1_555 A A 100 1_555 0.036 -1.563 3.207 3.380 2.487 31.069 -3.344 0.546 3.063 4.616 -6.274 31.344 2 AA_U19U20:A100A101_AA A 19 ? A 101 ? A 20 ? A 100 ? 1 A A 48 1_555 A U 36 1_555 A A 49 1_555 A U 35 1_555 -0.250 -1.834 3.377 -0.203 -0.708 32.207 -3.175 0.413 3.417 -1.275 0.366 32.215 3 AA_A48A49:U35U36_AA A 48 ? A 36 ? A 49 ? A 35 ? 1 A A 49 1_555 A U 35 1_555 A G 50 1_555 A C 34 1_555 -0.177 -1.449 3.168 -0.990 8.385 37.602 -3.157 0.155 2.797 12.811 1.512 38.505 4 AA_A49G50:C34U35_AA A 49 ? A 35 ? A 50 ? A 34 ? 1 A G 50 1_555 A C 34 1_555 A C 51 1_555 A G 33 1_555 -0.397 -1.595 3.371 -0.187 3.746 30.808 -3.703 0.706 3.162 7.019 0.351 31.030 5 AA_G50C51:G33C34_AA A 50 ? A 34 ? A 51 ? A 33 ? 1 A C 51 1_555 A G 33 1_555 A C 52 1_555 A G 32 1_555 -0.494 -1.972 3.369 -2.242 2.910 34.790 -3.724 0.480 3.223 4.849 3.737 34.978 6 AA_C51C52:G32G33_AA A 51 ? A 33 ? A 52 ? A 32 ? 1 A C 52 1_555 A G 32 1_555 A A 53 1_555 A U 31 1_555 0.426 -1.401 2.830 -1.734 8.438 27.166 -4.390 -1.182 2.270 17.416 3.579 28.474 7 AA_C52A53:U31G32_AA A 52 ? A 32 ? A 53 ? A 31 ? 1 A A 53 1_555 A U 31 1_555 A G 54 1_555 A C 30 1_555 -0.482 -1.880 3.457 -3.265 14.052 28.289 -5.871 0.318 2.326 26.671 6.198 31.688 8 AA_A53G54:C30U31_AA A 53 ? A 31 ? A 54 ? A 30 ? 1 A G 54 1_555 A C 30 1_555 A U 103 1_555 A U 29 1_555 3.704 -4.095 4.969 11.093 -1.811 5.300 -13.738 14.643 6.025 -10.444 -63.987 12.423 9 AA_G54U103:U29C30_AA A 54 ? A 30 ? A 103 ? A 29 ? 1 A U 103 1_555 A U 29 1_555 A U 104 1_555 A A 28 1_555 -0.406 -0.927 2.664 -7.411 3.244 43.062 -1.496 -0.031 2.622 4.374 9.991 43.780 10 AA_U103U104:A28U29_AA A 103 ? A 29 ? A 104 ? A 28 ? 1 A U 104 1_555 A A 28 1_555 A G 105 1_555 A C 27 1_555 0.140 -1.780 3.131 -1.983 1.998 25.556 -4.525 -0.836 2.966 4.499 4.466 25.708 11 AA_U104G105:C27A28_AA A 104 ? A 28 ? A 105 ? A 27 ? 1 A G 105 1_555 A C 27 1_555 A U 106 1_555 A A 26 1_555 -0.657 -2.098 3.067 -0.075 1.702 31.235 -4.187 1.206 2.953 3.158 0.140 31.280 12 AA_G105U106:A26C27_AA A 105 ? A 27 ? A 106 ? A 26 ? 1 A U 106 1_555 A A 26 1_555 A A 107 1_555 A U 25 1_555 0.144 -1.908 3.291 -1.694 6.772 28.984 -5.039 -0.611 2.771 13.288 3.324 29.795 13 AA_U106A107:U25A26_AA A 106 ? A 26 ? A 107 ? A 25 ? 1 A A 107 1_555 A U 25 1_555 A G 108 1_555 A C 24 1_555 -0.071 -1.949 2.942 -3.252 5.584 28.322 -4.924 -0.462 2.512 11.228 6.539 29.035 14 AA_A107G108:C24U25_AA A 107 ? A 25 ? A 108 ? A 24 ? 1 A G 108 1_555 A C 24 1_555 A C 109 1_555 A G 23 1_555 -0.268 -1.841 2.950 0.206 3.338 34.324 -3.559 0.481 2.762 5.639 -0.348 34.481 15 AA_G108C109:G23C24_AA A 108 ? A 24 ? A 109 ? A 23 ? 1 A C 109 1_555 A G 23 1_555 A G 110 1_555 A C 22 1_555 -0.147 -1.520 2.944 5.220 5.727 24.907 -4.694 1.532 2.458 12.886 -11.744 26.066 16 AA_C109G110:C22G23_AA A 109 ? A 23 ? A 110 ? A 22 ? 1 A G 110 1_555 A C 22 1_555 A C 111 1_555 A G 21 1_555 0.538 -1.552 3.141 6.665 2.927 34.963 -2.938 0.046 3.053 4.807 -10.946 35.690 17 AA_G110C111:G21C22_AA A 110 ? A 22 ? A 111 ? A 21 ? 1 A C 111 1_555 A G 21 1_555 B G 1 1_555 B C 86 1_555 0.709 -4.773 3.512 -17.284 -1.795 -25.266 9.439 -2.426 3.030 3.610 -34.757 -30.585 18 AB_C111G1:C86G21_BA A 111 ? A 21 ? B 1 ? B 86 ? 1 B G 1 1_555 B C 86 1_555 B G 2 1_555 B C 85 1_555 0.513 -2.018 3.296 10.820 19.342 34.280 -4.809 0.327 1.998 29.329 -16.407 40.639 19 BB_G1G2:C85C86_BB B 1 ? B 86 ? B 2 ? B 85 ? 1 B G 2 1_555 B C 85 1_555 B G 3 1_555 B C 84 1_555 -0.382 -1.693 3.092 -2.976 2.919 29.946 -3.794 0.173 2.941 5.614 5.723 30.228 20 BB_G2G3:C84C85_BB B 2 ? B 85 ? B 3 ? B 84 ? 1 B G 3 1_555 B C 84 1_555 B C 4 1_555 B G 83 1_555 0.287 -1.678 3.160 -0.771 1.810 34.366 -3.104 -0.599 3.063 3.060 1.303 34.421 21 BB_G3C4:G83C84_BB B 3 ? B 84 ? B 4 ? B 83 ? 1 B C 4 1_555 B G 83 1_555 B C 5 1_555 B G 82 1_555 0.065 -1.580 3.367 1.190 0.857 32.638 -2.960 0.095 3.326 1.525 -2.115 32.670 22 BB_C4C5:G82G83_BB B 4 ? B 83 ? B 5 ? B 82 ? 1 B C 5 1_555 B G 82 1_555 B A 6 1_555 B U 81 1_555 -0.176 -1.269 2.337 -7.640 15.021 24.316 -4.472 -0.663 1.341 31.305 15.921 29.512 23 BB_C5A6:U81G82_BB B 5 ? B 82 ? B 6 ? B 81 ? 1 B A 6 1_555 B U 81 1_555 B C 7 1_555 B G 80 1_555 -0.911 -1.697 3.273 0.304 1.930 39.832 -2.708 1.370 3.184 2.830 -0.446 39.878 24 BB_A6C7:G80U81_BB B 6 ? B 81 ? B 7 ? B 80 ? 1 B C 7 1_555 B G 80 1_555 B U 8 1_555 B A 79 1_555 -0.662 -2.396 3.081 -0.785 7.191 27.303 -6.340 1.201 2.402 14.905 1.627 28.227 25 BB_C7U8:A79G80_BB B 7 ? B 80 ? B 8 ? B 79 ? 1 B U 8 1_555 B A 79 1_555 B G 9 1_555 B C 78 1_555 -0.013 -1.614 2.906 -2.663 7.579 27.544 -4.669 -0.470 2.377 15.505 5.448 28.670 26 BB_U8G9:C78A79_BB B 8 ? B 79 ? B 9 ? B 78 ? 1 B G 9 1_555 B C 78 1_555 B U 10 1_555 B C 77 1_555 -0.398 -1.811 3.388 -2.669 0.781 28.234 -3.881 0.176 3.360 1.596 5.455 28.368 27 BB_G9U10:C77C78_BB B 9 ? B 78 ? B 10 ? B 77 ? 1 B U 10 1_555 B C 77 1_555 B U 13 1_555 B A 76 1_555 -0.662 -2.021 4.143 11.257 7.898 62.361 -2.334 1.226 3.734 7.530 -10.733 63.710 28 BB_U10U13:A76C77_BB B 10 ? B 77 ? B 13 ? B 76 ? 1 B U 13 1_555 B A 76 1_555 B C 14 1_555 B G 75 1_555 -0.837 -1.849 3.187 5.292 3.447 38.493 -3.160 1.851 2.881 5.185 -7.962 38.988 29 BB_U13C14:G75A76_BB B 13 ? B 76 ? B 14 ? B 75 ? 1 B C 14 1_555 B G 75 1_555 B A 15 1_555 B U 74 1_555 -0.862 -1.504 3.467 8.357 -1.359 32.588 -2.369 2.906 3.213 -2.372 -14.588 33.641 30 BB_C14A15:U74G75_BB B 14 ? B 75 ? B 15 ? B 74 ? 1 B A 15 1_555 B U 74 1_555 B C 16 1_555 B U 73 1_555 -1.150 -1.842 3.180 -2.595 1.132 37.319 -3.016 1.459 3.195 1.767 4.048 37.422 31 BB_A15C16:U73U74_BB B 15 ? B 74 ? B 16 ? B 73 ? 1 B C 16 1_555 B U 73 1_555 B U 17 1_555 B A 72 1_555 0.910 -1.802 3.144 -1.209 0.281 29.782 -3.559 -2.009 3.088 0.546 2.351 29.807 32 BB_C16U17:A72U73_BB B 16 ? B 73 ? B 17 ? B 72 ? 1 B U 17 1_555 B A 72 1_555 B C 56 1_555 B G 71 1_555 0.163 -1.863 2.708 2.369 10.927 39.805 -3.533 -0.038 2.151 15.677 -3.398 41.284 33 BB_U17C56:G71A72_BB B 17 ? B 72 ? B 56 ? B 71 ? 1 B C 56 1_555 B G 71 1_555 B C 57 1_555 B G 70 1_555 0.047 -2.122 2.850 4.959 -1.653 31.815 -3.561 0.701 2.927 -2.990 -8.971 32.231 34 BB_C56C57:G70G71_BB B 56 ? B 71 ? B 57 ? B 70 ? 1 B C 57 1_555 B G 70 1_555 B A 58 1_555 B U 69 1_555 -0.357 -1.886 2.814 -2.971 5.595 28.102 -4.808 0.179 2.425 11.340 6.022 28.793 35 BB_C57A58:U69G70_BB B 57 ? B 70 ? B 58 ? B 69 ? 1 B A 58 1_555 B U 69 1_555 B C 59 1_555 B G 68 1_555 1.140 -1.852 3.280 9.956 17.233 38.742 -4.077 -0.634 2.488 24.139 -13.945 43.380 36 BB_A58C59:G68U69_BB B 58 ? B 69 ? B 59 ? B 68 ? 1 B C 59 1_555 B G 68 1_555 B A 60 1_555 B U 67 1_555 -1.315 -1.889 4.310 2.349 3.734 35.125 -3.808 2.605 4.001 6.156 -3.873 35.392 37 BB_C59A60:U67G68_BB B 59 ? B 68 ? B 60 ? B 67 ? 1 B A 60 1_555 B U 67 1_555 B C 61 1_555 B G 66 1_555 0.867 -1.578 3.315 2.326 2.079 23.110 -4.621 -1.345 3.233 5.160 -5.772 23.316 38 BB_A60C61:G66U67_BB B 60 ? B 67 ? B 61 ? B 66 ? 1 A G 66 1_555 A C 61 1_555 A U 67 1_555 A A 60 1_555 -0.868 -1.578 3.316 -2.325 2.078 23.101 -4.622 1.347 3.233 5.159 5.772 23.307 39 AA_G66U67:A60C61_AA A 66 ? A 61 ? A 67 ? A 60 ? 1 A U 67 1_555 A A 60 1_555 A G 68 1_555 A C 59 1_555 1.317 -1.888 4.311 -2.355 3.729 35.131 -3.805 -2.608 4.002 6.147 3.882 35.398 40 AA_U67G68:C59A60_AA A 67 ? A 60 ? A 68 ? A 59 ? 1 A G 68 1_555 A C 59 1_555 A U 69 1_555 A A 58 1_555 -1.140 -1.852 3.278 -9.946 17.248 38.755 -4.075 0.637 2.485 24.152 13.927 43.395 41 AA_G68U69:A58C59_AA A 68 ? A 59 ? A 69 ? A 58 ? 1 A U 69 1_555 A A 58 1_555 A G 70 1_555 A C 57 1_555 0.356 -1.886 2.814 2.951 5.597 28.099 -4.809 -0.181 2.425 11.347 -5.981 28.788 42 AA_U69G70:C57A58_AA A 69 ? A 58 ? A 70 ? A 57 ? 1 A G 70 1_555 A C 57 1_555 A G 71 1_555 A C 56 1_555 -0.047 -2.122 2.850 -4.956 -1.662 31.812 -3.560 -0.699 2.928 -3.006 8.966 32.228 43 AA_G70G71:C56C57_AA A 70 ? A 57 ? A 71 ? A 56 ? 1 A G 71 1_555 A C 56 1_555 A A 72 1_555 A U 17 1_555 -0.163 -1.863 2.709 -2.373 10.939 39.793 -3.535 0.037 2.150 15.698 3.405 41.275 44 AA_G71A72:U17C56_AA A 71 ? A 56 ? A 72 ? A 17 ? 1 A A 72 1_555 A U 17 1_555 A U 73 1_555 A C 16 1_555 -0.911 -1.802 3.142 1.198 0.256 29.789 -3.553 2.009 3.089 0.498 -2.328 29.813 45 AA_A72U73:C16U17_AA A 72 ? A 17 ? A 73 ? A 16 ? 1 A U 73 1_555 A C 16 1_555 A U 74 1_555 A A 15 1_555 1.150 -1.842 3.181 2.595 1.139 37.325 -3.016 -1.460 3.195 1.777 -4.048 37.429 46 AA_U73U74:A15C16_AA A 73 ? A 16 ? A 74 ? A 15 ? 1 A U 74 1_555 A A 15 1_555 A G 75 1_555 A C 14 1_555 0.862 -1.505 3.467 -8.357 -1.382 32.588 -2.367 -2.905 3.213 -2.413 14.587 33.642 47 AA_U74G75:C14A15_AA A 74 ? A 15 ? A 75 ? A 14 ? 1 A G 75 1_555 A C 14 1_555 A A 76 1_555 A U 13 1_555 0.837 -1.850 3.187 -5.276 3.455 38.490 -3.162 -1.850 2.881 5.199 7.939 38.984 48 AA_G75A76:U13C14_AA A 75 ? A 14 ? A 76 ? A 13 ? 1 A A 76 1_555 A U 13 1_555 A C 77 1_555 A U 10 1_555 0.663 -2.020 4.144 -11.245 7.893 62.350 -2.334 -1.226 3.735 7.527 10.723 63.697 49 AA_A76C77:U10U13_AA A 76 ? A 13 ? A 77 ? A 10 ? 1 A C 77 1_555 A U 10 1_555 A C 78 1_555 A G 9 1_555 0.398 -1.811 3.387 2.661 0.797 28.247 -3.883 -0.179 3.358 1.628 -5.435 28.381 50 AA_C77C78:G9U10_AA A 77 ? A 10 ? A 78 ? A 9 ? 1 A C 78 1_555 A G 9 1_555 A A 79 1_555 A U 8 1_555 0.013 -1.614 2.906 2.668 7.571 27.537 -4.670 0.471 2.378 15.492 -5.460 28.662 51 AA_C78A79:U8G9_AA A 78 ? A 9 ? A 79 ? A 8 ? 1 A A 79 1_555 A U 8 1_555 A G 80 1_555 A C 7 1_555 0.662 -2.395 3.081 0.781 7.204 27.303 -6.341 -1.201 2.400 14.931 -1.618 28.230 52 AA_A79G80:C7U8_AA A 79 ? A 8 ? A 80 ? A 7 ? 1 A G 80 1_555 A C 7 1_555 A U 81 1_555 A A 6 1_555 0.911 -1.697 3.273 -0.309 1.927 39.841 -2.708 -1.371 3.184 2.826 0.453 39.887 53 AA_G80U81:A6C7_AA A 80 ? A 7 ? A 81 ? A 6 ? 1 A U 81 1_555 A A 6 1_555 A G 82 1_555 A C 5 1_555 0.175 -1.269 2.336 7.647 15.027 24.310 -4.471 0.664 1.340 31.319 -15.937 29.513 54 AA_U81G82:C5A6_AA A 81 ? A 6 ? A 82 ? A 5 ? 1 A G 82 1_555 A C 5 1_555 A G 83 1_555 A C 4 1_555 -0.066 -1.579 3.368 -1.200 0.850 32.639 -2.958 -0.095 3.327 1.511 2.134 32.671 55 AA_G82G83:C4C5_AA A 82 ? A 5 ? A 83 ? A 4 ? 1 A G 83 1_555 A C 4 1_555 A C 84 1_555 A G 3 1_555 -0.287 -1.678 3.160 0.770 1.802 34.367 -3.103 0.598 3.063 3.047 -1.302 34.422 56 AA_G83C84:G3C4_AA A 83 ? A 4 ? A 84 ? A 3 ? 1 A C 84 1_555 A G 3 1_555 A C 85 1_555 A G 2 1_555 0.381 -1.693 3.092 2.992 2.934 29.941 -3.797 -0.170 2.940 5.643 -5.755 30.226 57 AA_C84C85:G2G3_AA A 84 ? A 3 ? A 85 ? A 2 ? 1 A C 85 1_555 A G 2 1_555 A C 86 1_555 A G 1 1_555 -0.512 -2.017 3.296 -10.833 19.366 34.288 -4.807 -0.327 1.997 29.353 16.420 40.660 58 AA_C85C86:G1G2_AA A 85 ? A 2 ? A 86 ? A 1 ? 1 A C 86 1_555 A G 1 1_555 B G 21 1_555 B C 111 1_555 -0.791 -4.812 3.482 17.377 -1.799 -25.265 9.498 2.275 3.046 3.614 34.904 -30.636 59 AB_C86G21:C111G1_BA A 86 ? A 1 ? B 21 ? B 111 ? 1 B G 21 1_555 B C 111 1_555 B C 22 1_555 B G 110 1_555 -0.538 -1.552 3.142 -6.662 2.911 34.956 -2.937 -0.047 3.055 4.782 10.944 35.681 60 BB_G21C22:G110C111_BB B 21 ? B 111 ? B 22 ? B 110 ? 1 B C 22 1_555 B G 110 1_555 B G 23 1_555 B C 109 1_555 0.147 -1.520 2.942 -5.211 5.731 24.914 -4.694 -1.528 2.456 12.892 11.721 26.072 61 BB_C22G23:C109G110_BB B 22 ? B 110 ? B 23 ? B 109 ? 1 B G 23 1_555 B C 109 1_555 B C 24 1_555 B G 108 1_555 0.268 -1.842 2.950 -0.214 3.350 34.305 -3.564 -0.482 2.762 5.663 0.362 34.464 62 BB_G23C24:G108C109_BB B 23 ? B 109 ? B 24 ? B 108 ? 1 B C 24 1_555 B G 108 1_555 B U 25 1_555 B A 107 1_555 0.073 -1.949 2.942 3.255 5.554 28.325 -4.920 0.459 2.514 11.167 -6.545 29.033 63 BB_C24U25:A107G108_BB B 24 ? B 108 ? B 25 ? B 107 ? 1 B U 25 1_555 B A 107 1_555 B A 26 1_555 B U 106 1_555 -0.144 -1.908 3.290 1.698 6.794 28.997 -5.039 0.612 2.769 13.324 -3.331 29.813 64 BB_U25A26:U106A107_BB B 25 ? B 107 ? B 26 ? B 106 ? 1 B A 26 1_555 B U 106 1_555 B C 27 1_555 B G 105 1_555 0.657 -2.098 3.067 0.082 1.704 31.233 -4.187 -1.205 2.953 3.163 -0.152 31.278 65 BB_A26C27:G105U106_BB B 26 ? B 106 ? B 27 ? B 105 ? 1 B C 27 1_555 B G 105 1_555 B A 28 1_555 B U 104 1_555 -0.140 -1.779 3.132 1.977 1.998 25.547 -4.526 0.835 2.967 4.500 -4.453 25.698 66 BB_C27A28:U104G105_BB B 27 ? B 105 ? B 28 ? B 104 ? 1 B A 28 1_555 B U 104 1_555 B U 29 1_555 B U 103 1_555 0.406 -0.927 2.665 7.421 3.235 43.079 -1.494 0.033 2.624 4.359 -10.000 43.797 67 BB_A28U29:U103U104_BB B 28 ? B 104 ? B 29 ? B 103 ? 1 B U 29 1_555 B U 103 1_555 B C 30 1_555 B G 54 1_555 -3.703 -4.094 4.968 -11.094 -1.789 5.297 -13.800 -14.643 6.018 -10.324 64.014 12.419 68 BB_U29C30:G54U103_BB B 29 ? B 103 ? B 30 ? B 54 ? 1 B C 30 1_555 B G 54 1_555 B U 31 1_555 B A 53 1_555 0.482 -1.880 3.458 3.242 14.047 28.282 -5.873 -0.323 2.327 26.668 -6.156 31.678 69 BB_C30U31:A53G54_BB B 30 ? B 54 ? B 31 ? B 53 ? 1 B U 31 1_555 B A 53 1_555 B G 32 1_555 B C 52 1_555 -0.426 -1.400 2.830 1.755 8.435 27.177 -4.386 1.187 2.270 17.405 -3.622 28.485 70 BB_U31G32:C52A53_BB B 31 ? B 53 ? B 32 ? B 52 ? 1 B G 32 1_555 B C 52 1_555 B G 33 1_555 B C 51 1_555 0.493 -1.972 3.368 2.230 2.909 34.782 -3.725 -0.481 3.222 4.849 -3.718 34.969 71 BB_G32G33:C51C52_BB B 32 ? B 52 ? B 33 ? B 51 ? 1 B G 33 1_555 B C 51 1_555 B C 34 1_555 B G 50 1_555 0.397 -1.596 3.372 0.185 3.755 30.812 -3.706 -0.707 3.162 7.034 -0.347 31.035 72 BB_G33C34:G50C51_BB B 33 ? B 51 ? B 34 ? B 50 ? 1 B C 34 1_555 B G 50 1_555 B U 35 1_555 B A 49 1_555 0.177 -1.449 3.168 0.994 8.380 37.603 -3.156 -0.155 2.797 12.804 -1.519 38.505 73 BB_C34U35:A49G50_BB B 34 ? B 50 ? B 35 ? B 49 ? 1 B U 35 1_555 B A 49 1_555 B U 36 1_555 B A 48 1_555 0.249 -1.834 3.377 0.209 -0.705 32.199 -3.176 -0.410 3.417 -1.271 -0.377 32.207 74 BB_U35U36:A48A49_BB B 35 ? B 49 ? B 36 ? B 48 ? 1 A U 88 1_555 B U 98 1_555 A C 89 1_555 B G 97 1_555 0.564 -1.108 2.671 -3.668 2.282 47.655 -1.512 -0.929 2.571 2.817 4.529 47.839 75 AA_U88C89:G97U98_BB A 88 ? B 98 ? A 89 ? B 97 ? 1 A C 89 1_555 B G 97 1_555 A C 90 1_555 B G 96 1_555 0.078 -2.234 3.149 2.513 7.094 28.623 -5.703 0.317 2.531 14.044 -4.974 29.575 76 AA_C89C90:G96G97_BB A 89 ? B 97 ? A 90 ? B 96 ? 1 A C 90 1_555 B G 96 1_555 A C 91 1_555 B A 95 1_555 0.456 -1.681 3.712 1.906 1.668 58.799 -1.808 -0.353 3.679 1.698 -1.940 58.849 77 AA_C90C91:A95G96_BB A 90 ? B 96 ? A 91 ? B 95 ? 1 A A 95 1_555 B C 91 1_555 A G 96 1_555 B C 90 1_555 -0.455 -1.681 3.716 -1.915 1.663 58.800 -1.807 0.351 3.683 1.693 1.949 58.850 78 AA_A95G96:C90C91_BB A 95 ? B 91 ? A 96 ? B 90 ? 1 A G 96 1_555 B C 90 1_555 A G 97 1_555 B C 89 1_555 -0.078 -2.234 3.149 -2.508 7.107 28.617 -5.707 -0.317 2.530 14.072 4.967 29.573 79 AA_G96G97:C89C90_BB A 96 ? B 90 ? A 97 ? B 89 ? 1 A G 97 1_555 B C 89 1_555 A U 98 1_555 B U 88 1_555 -0.564 -1.108 2.670 3.665 2.284 47.655 -1.512 0.930 2.570 2.820 -4.526 47.839 80 AA_G97U98:U88C89_BB A 97 ? B 89 ? A 98 ? B 88 ? 1 B G 18 1_555 B C 102 1_555 B U 19 1_555 B A 101 1_555 -0.488 -1.940 3.154 -0.235 2.602 35.020 -3.582 0.776 3.009 4.316 0.389 35.114 81 BB_G18U19:A101C102_BB B 18 ? B 102 ? B 19 ? B 101 ? 1 B U 19 1_555 B A 101 1_555 B U 20 1_555 B A 100 1_555 0.035 -1.563 3.208 3.382 2.479 31.064 -3.343 0.549 3.063 4.603 -6.279 31.338 82 BB_U19U20:A100A101_BB B 19 ? B 101 ? B 20 ? B 100 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 9DIB # _atom_sites.entry_id 9DIG _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C K MG N O P # loop_