HEADER DNA BINDING PROTEIN 11-SEP-24 9DLU TITLE SOLUTION STRUCTURE OF STAPHYLOCOCCUS AUREUS RESPONSE REGULATOR ARLR TITLE 2 DNA-BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RESPONSE REGULATOR ARLR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS NCTC 8325; SOURCE 3 ORGANISM_TAXID: 93061; SOURCE 4 STRAIN: NCTC 8325 / PS 47; SOURCE 5 GENE: ARLR, SAOUHSC_01420; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A KEYWDS TWO-COMPONENT REGULATORY SYSTEM ARLRS, RESPONSE REGULATOR ARLR, DNA KEYWDS 2 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.RAFID FEISAL,P.HWANG REVDAT 1 17-SEP-25 9DLU 0 JRNL AUTH M.RAFID FEISAL,P.MERCIER,K.Y.L.MAK,P.B.LIU,Y.WEN,P.M.HWANG JRNL TITL STRUCTURE AND DYNAMICS OF STAPHYLOCOCCUS AUREUS RESPONSE JRNL TITL 2 REGULATOR ARLR DNA-BINDING DOMAIN BY SOLUTION NMR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9DLU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1000288021. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 300 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] DNA REMARK 210 -BINDING DOMAIN OF THE REMARK 210 STAPHYLOCOCCUS AUREUS RESPONSE REMARK 210 REGULATOR ARLR, 10 MM IMIDAZOLE, REMARK 210 300 MM SODIUM CHLORIDE, 0.5 MM REMARK 210 [U-2H] D6-DSS, 90% H2O/10% D2O; REMARK 210 0.5 MM [U-15N] DNA-BINDING REMARK 210 DOMAIN OF THE STAPHYLOCOCCUS REMARK 210 AUREUS RESPONSE REGULATOR ARLR, REMARK 210 10 MM IMIDAZOLE, 300 MM SODIUM REMARK 210 CHLORIDE, 0.5 MM [U-2H] D6-DSS, REMARK 210 90% H2O/10% D2O; 0.5 MM [U-30% REMARK 210 13C; U-100% 15N] DNA-BINDING REMARK 210 DOMAIN OF THE STAPHYLOCOCCUS REMARK 210 AUREUS RESPONSE REGULATOR ARLR, REMARK 210 10 MM IMIDAZOLE, 100 MM REMARK 210 POTASSIUM CHLORIDE, 0.5 MM [U-2H] REMARK 210 D6-DSS, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCACO; 3D HNCO; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 3D C(CO)NH; 3D REMARK 210 1H-13C NOESY AROMATIC; 2D 1H-13C REMARK 210 HSQC AROMATIC; 3D H-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, ARIA, VNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TRP A 177 HG SER A 181 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 121 -29.44 73.57 REMARK 500 1 ASP A 123 96.71 -68.77 REMARK 500 1 ASN A 162 31.58 -93.32 REMARK 500 1 ASN A 180 76.32 43.02 REMARK 500 1 VAL A 214 -72.40 -115.35 REMARK 500 2 HIS A 122 36.41 -97.73 REMARK 500 2 LYS A 163 -86.07 33.61 REMARK 500 2 GLU A 182 42.86 -83.16 REMARK 500 2 VAL A 214 -73.40 -114.24 REMARK 500 3 HIS A 119 -43.72 -151.78 REMARK 500 3 HIS A 120 84.08 54.91 REMARK 500 3 HIS A 122 37.55 -146.02 REMARK 500 3 LYS A 163 -93.43 36.20 REMARK 500 3 VAL A 214 -67.13 -120.50 REMARK 500 4 HIS A 122 -145.82 -134.77 REMARK 500 4 ASP A 123 82.14 -60.16 REMARK 500 4 LYS A 163 -97.57 37.01 REMARK 500 4 ASN A 180 38.74 -151.78 REMARK 500 4 VAL A 214 -70.28 -111.22 REMARK 500 5 HIS A 118 92.85 -69.42 REMARK 500 5 LYS A 163 -104.60 36.36 REMARK 500 5 VAL A 166 109.33 -50.60 REMARK 500 5 VAL A 214 -80.93 -123.46 REMARK 500 6 HIS A 119 -96.23 -133.84 REMARK 500 6 HIS A 121 -56.19 -150.02 REMARK 500 6 ASN A 180 67.96 -158.49 REMARK 500 6 SER A 181 -40.26 -149.61 REMARK 500 6 VAL A 214 -73.99 -110.63 REMARK 500 7 HIS A 117 -57.52 70.00 REMARK 500 7 HIS A 120 -159.57 63.47 REMARK 500 7 HIS A 122 43.94 -146.78 REMARK 500 7 LYS A 163 -90.31 32.92 REMARK 500 7 VAL A 214 -78.29 -119.14 REMARK 500 8 HIS A 122 72.74 -69.69 REMARK 500 8 VAL A 214 -70.15 -117.35 REMARK 500 9 HIS A 118 -62.00 71.01 REMARK 500 9 HIS A 119 -79.28 -145.16 REMARK 500 9 HIS A 120 -70.25 -140.99 REMARK 500 9 HIS A 121 -86.51 -143.20 REMARK 500 9 LYS A 163 -80.40 29.38 REMARK 500 9 ASN A 180 71.70 64.04 REMARK 500 9 ASP A 203 25.80 47.72 REMARK 500 9 VAL A 214 -70.26 -113.86 REMARK 500 10 HIS A 121 93.61 -167.29 REMARK 500 10 VAL A 214 -73.94 -130.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 52595 RELATED DB: BMRB DBREF 9DLU A 123 219 UNP Q9KJN4 ARLR_STAA8 123 219 SEQADV 9DLU MET A 115 UNP Q9KJN4 INITIATING METHIONINE SEQADV 9DLU GLY A 116 UNP Q9KJN4 EXPRESSION TAG SEQADV 9DLU HIS A 117 UNP Q9KJN4 EXPRESSION TAG SEQADV 9DLU HIS A 118 UNP Q9KJN4 EXPRESSION TAG SEQADV 9DLU HIS A 119 UNP Q9KJN4 EXPRESSION TAG SEQADV 9DLU HIS A 120 UNP Q9KJN4 EXPRESSION TAG SEQADV 9DLU HIS A 121 UNP Q9KJN4 EXPRESSION TAG SEQADV 9DLU HIS A 122 UNP Q9KJN4 EXPRESSION TAG SEQRES 1 A 105 MET GLY HIS HIS HIS HIS HIS HIS ASP ILE ILE ASP VAL SEQRES 2 A 105 ASN GLY ILE THR ILE ASP LYS ASN ALA PHE LYS VAL THR SEQRES 3 A 105 VAL ASN GLY ALA GLU ILE GLU LEU THR LYS THR GLU TYR SEQRES 4 A 105 ASP LEU LEU TYR LEU LEU ALA GLU ASN LYS ASN HIS VAL SEQRES 5 A 105 MET GLN ARG GLU GLN ILE LEU ASN HIS VAL TRP GLY TYR SEQRES 6 A 105 ASN SER GLU VAL GLU THR ASN VAL VAL ASP VAL TYR ILE SEQRES 7 A 105 ARG TYR LEU ARG ASN LYS LEU LYS PRO TYR ASP ARG ASP SEQRES 8 A 105 LYS MET ILE GLU THR VAL ARG GLY VAL GLY TYR VAL ILE SEQRES 9 A 105 ARG HELIX 1 AA1 THR A 149 LYS A 163 1 15 HELIX 2 AA2 ARG A 169 TRP A 177 1 9 HELIX 3 AA3 THR A 185 LYS A 200 1 16 HELIX 4 AA4 PRO A 201 ASP A 203 5 3 HELIX 5 AA5 ARG A 204 LYS A 206 5 3 SHEET 1 AA1 4 ILE A 125 VAL A 127 0 SHEET 2 AA1 4 ILE A 130 ASP A 133 -1 O ILE A 132 N ILE A 125 SHEET 3 AA1 4 LYS A 138 VAL A 141 -1 O LYS A 138 N ASP A 133 SHEET 4 AA1 4 ALA A 144 ILE A 146 -1 O ILE A 146 N VAL A 139 SHEET 1 AA2 3 MET A 167 GLN A 168 0 SHEET 2 AA2 3 GLY A 215 ILE A 218 -1 O TYR A 216 N MET A 167 SHEET 3 AA2 3 ILE A 208 VAL A 211 -1 N GLU A 209 O VAL A 217 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MASTER 163 0 0 5 7 0 0 6 875 1 0 9 END