HEADER SIGNALING PROTEIN 22-SEP-24 9DPM TITLE BMP-9 MONOMER GROWTH FACTOR WITH CYSTEINYLATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH/DIFFERENTIATION FACTOR 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GDF-2,BONE MORPHOGENETIC PROTEIN 9,BMP-9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GDF2, BMP9; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: EXPI293 (INVITROGEN); SOURCE 10 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 11 EXPRESSION_SYSTEM_TISSUE: EMBRYONIC; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PCDNA3.1 KEYWDS SIGNALING PROTEIN, BMP, BONE MORPHOGENETIC PROTEIN, TGF-BETA FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR T.A.SCHWARTZE,A.P.HINCK REVDAT 2 29-JAN-25 9DPM 1 JRNL REVDAT 1 22-JAN-25 9DPM 0 JRNL AUTH T.A.SCHWARTZE,S.A.MOROSKY,T.L.ROSATO,A.HENRICKSON,G.LIN, JRNL AUTH 2 C.S.HINCK,A.B.TAYLOR,S.K.OLSEN,G.CALERO,B.DEMELER,B.L.ROMAN, JRNL AUTH 3 A.P.HINCK JRNL TITL MOLECULAR BASIS OF INTERCHAIN DISULFIDE BOND FORMATION IN JRNL TITL 2 BMP-9 AND BMP-10. JRNL REF J.MOL.BIOL. V. 437 68935 2025 JRNL REFN ESSN 1089-8638 JRNL PMID 39793884 JRNL DOI 10.1016/J.JMB.2025.168935 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4600 - 3.2500 1.00 3083 148 0.1730 0.2001 REMARK 3 2 3.2500 - 2.5800 1.00 2923 148 0.2100 0.2567 REMARK 3 3 2.5800 - 2.2500 1.00 2889 155 0.2361 0.3045 REMARK 3 4 2.2500 - 2.0500 0.99 2835 169 0.2829 0.3055 REMARK 3 5 2.0500 - 1.9000 0.99 2869 120 0.3584 0.4027 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.344 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 866 REMARK 3 ANGLE : 0.770 1176 REMARK 3 CHIRALITY : 0.045 129 REMARK 3 PLANARITY : 0.004 148 REMARK 3 DIHEDRAL : 11.763 320 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 324:330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.018 5.539 22.986 REMARK 3 T TENSOR REMARK 3 T11: 0.8947 T22: 0.6416 REMARK 3 T33: 0.3909 T12: -0.0847 REMARK 3 T13: -0.0547 T23: 0.2752 REMARK 3 L TENSOR REMARK 3 L11: 6.2046 L22: 9.2164 REMARK 3 L33: 2.0012 L12: 1.6921 REMARK 3 L13: 7.6068 L23: 5.3699 REMARK 3 S TENSOR REMARK 3 S11: 0.4552 S12: -2.1946 S13: -0.9369 REMARK 3 S21: 2.0344 S22: -0.5004 S23: 0.5431 REMARK 3 S31: 0.5630 S32: -1.8148 S33: 1.3754 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 331:349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.106 4.963 -1.597 REMARK 3 T TENSOR REMARK 3 T11: 0.7299 T22: 0.8014 REMARK 3 T33: 0.4195 T12: 0.2702 REMARK 3 T13: -0.0943 T23: -0.0500 REMARK 3 L TENSOR REMARK 3 L11: 3.6926 L22: 2.0424 REMARK 3 L33: 3.8345 L12: -0.0263 REMARK 3 L13: -0.6088 L23: 1.7987 REMARK 3 S TENSOR REMARK 3 S11: 0.4211 S12: 1.6955 S13: -0.3357 REMARK 3 S21: -0.9572 S22: -0.7393 S23: 0.4103 REMARK 3 S31: 0.3594 S32: -0.0560 S33: 0.3298 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 350:365 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.950 7.889 19.211 REMARK 3 T TENSOR REMARK 3 T11: 0.7701 T22: 0.5399 REMARK 3 T33: 0.4304 T12: -0.0138 REMARK 3 T13: 0.0429 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 4.5924 L22: 4.8536 REMARK 3 L33: 4.5661 L12: -2.6623 REMARK 3 L13: -4.4405 L23: 3.2485 REMARK 3 S TENSOR REMARK 3 S11: -0.2100 S12: -0.0516 S13: -0.2205 REMARK 3 S21: 0.9598 S22: -0.5601 S23: 0.7466 REMARK 3 S31: 0.7982 S32: -0.0400 S33: 0.3208 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 366:383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.004 19.920 29.854 REMARK 3 T TENSOR REMARK 3 T11: 0.6713 T22: 0.5199 REMARK 3 T33: 0.3604 T12: -0.1356 REMARK 3 T13: -0.0389 T23: 0.0612 REMARK 3 L TENSOR REMARK 3 L11: 3.2485 L22: 6.3653 REMARK 3 L33: 6.9019 L12: -2.5590 REMARK 3 L13: -1.2523 L23: 1.0317 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: -0.2254 S13: -0.8832 REMARK 3 S21: 0.4412 S22: -0.0038 S23: 0.1479 REMARK 3 S31: 0.6374 S32: 0.0998 S33: -0.1407 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 384:392 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.387 24.464 25.648 REMARK 3 T TENSOR REMARK 3 T11: 0.4275 T22: 0.5273 REMARK 3 T33: 0.3907 T12: -0.0975 REMARK 3 T13: -0.0187 T23: 0.0320 REMARK 3 L TENSOR REMARK 3 L11: 2.3925 L22: 3.1499 REMARK 3 L33: 6.9665 L12: -1.2857 REMARK 3 L13: -0.2602 L23: -3.0204 REMARK 3 S TENSOR REMARK 3 S11: 0.7815 S12: 0.3567 S13: 0.1329 REMARK 3 S21: -1.0881 S22: -0.2779 S23: 0.3906 REMARK 3 S31: -0.0363 S32: -0.6358 S33: -0.1207 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 393:397 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.923 12.438 18.180 REMARK 3 T TENSOR REMARK 3 T11: 0.6473 T22: 0.4460 REMARK 3 T33: 0.3704 T12: 0.0437 REMARK 3 T13: -0.0173 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 7.2195 L22: 4.4709 REMARK 3 L33: 6.0677 L12: 2.9090 REMARK 3 L13: -5.5303 L23: 0.0726 REMARK 3 S TENSOR REMARK 3 S11: 0.8044 S12: -0.3025 S13: 0.0696 REMARK 3 S21: 0.2978 S22: -0.2185 S23: -0.2224 REMARK 3 S31: 0.0834 S32: 0.3396 S33: -0.3220 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 398:411 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.226 7.099 -4.872 REMARK 3 T TENSOR REMARK 3 T11: 0.8857 T22: 0.9223 REMARK 3 T33: 0.3964 T12: 0.2404 REMARK 3 T13: 0.0432 T23: 0.0951 REMARK 3 L TENSOR REMARK 3 L11: 3.7248 L22: 5.0412 REMARK 3 L33: 0.8423 L12: 1.8766 REMARK 3 L13: -0.4093 L23: 1.5972 REMARK 3 S TENSOR REMARK 3 S11: -0.2225 S12: 1.2063 S13: 0.3169 REMARK 3 S21: -1.2698 S22: 0.1426 S23: -0.0107 REMARK 3 S31: -0.2873 S32: 0.9044 S33: -0.5644 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 412:429 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.437 8.307 8.277 REMARK 3 T TENSOR REMARK 3 T11: 0.4980 T22: 0.5456 REMARK 3 T33: 0.3800 T12: 0.1308 REMARK 3 T13: -0.0153 T23: 0.0583 REMARK 3 L TENSOR REMARK 3 L11: 3.7460 L22: 4.8475 REMARK 3 L33: 4.4890 L12: -1.3760 REMARK 3 L13: -2.0748 L23: 0.8127 REMARK 3 S TENSOR REMARK 3 S11: 0.1746 S12: 0.2147 S13: -0.1587 REMARK 3 S21: -0.1114 S22: -0.2552 S23: -0.3886 REMARK 3 S31: 0.3623 S32: 0.1704 S33: 0.0105 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN A AND RESID 501:501 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.760 20.670 17.912 REMARK 3 T TENSOR REMARK 3 T11: 0.8798 T22: 0.6206 REMARK 3 T33: 0.4678 T12: -0.0452 REMARK 3 T13: -0.0137 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 2.9012 L22: 5.9991 REMARK 3 L33: 8.6149 L12: -0.2127 REMARK 3 L13: 1.8195 L23: -6.8207 REMARK 3 S TENSOR REMARK 3 S11: -1.0512 S12: -0.3308 S13: -0.6265 REMARK 3 S21: 0.4109 S22: 2.0480 S23: 1.1391 REMARK 3 S31: -0.0034 S32: -2.7450 S33: -1.7437 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9DPM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1000287267. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15387 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 23.78 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 3.02500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.9 M SODIUM CHLORIDE, 133 MM HEPES, REMARK 280 166 MM MES, PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.93150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 35.93150 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.30300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.93150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.15150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.93150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.45450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.93150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 108.45450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.93150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.15150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 35.93150 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 35.93150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.30300 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 35.93150 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 35.93150 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 72.30300 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 35.93150 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 108.45450 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 35.93150 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 36.15150 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 35.93150 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 36.15150 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 35.93150 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 108.45450 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 35.93150 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 35.93150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.30300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 687 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 320 REMARK 465 SER A 321 REMARK 465 GLY A 322 REMARK 465 ALA A 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 354 165.14 63.80 REMARK 500 THR A 369 60.51 35.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 503 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 416 OH REMARK 620 2 HOH A 638 O 109.8 REMARK 620 3 HOH A 672 O 119.6 129.9 REMARK 620 N 1 2 DBREF 9DPM A 320 429 UNP Q9UK05 GDF2_HUMAN 320 429 SEQADV 9DPM SER A 321 UNP Q9UK05 ALA 321 ENGINEERED MUTATION SEQRES 1 A 110 SER SER GLY ALA GLY SER HIS CYS GLN LYS THR SER LEU SEQRES 2 A 110 ARG VAL ASN PHE GLU ASP ILE GLY TRP ASP SER TRP ILE SEQRES 3 A 110 ILE ALA PRO LYS GLU TYR GLU ALA TYR GLU CYS LYS GLY SEQRES 4 A 110 GLY CYS PHE PHE PRO LEU ALA ASP ASP VAL THR PRO THR SEQRES 5 A 110 LYS HIS ALA ILE VAL GLN THR LEU VAL HIS LEU LYS PHE SEQRES 6 A 110 PRO THR LYS VAL GLY LYS ALA CYS CYS VAL PRO THR LYS SEQRES 7 A 110 LEU SER PRO ILE SER VAL LEU TYR LYS ASP ASP MET GLY SEQRES 8 A 110 VAL PRO THR LEU LYS TYR HIS TYR GLU GLY MET SER VAL SEQRES 9 A 110 ALA GLU CYS GLY CYS ARG HET CYS A 501 13 HET NA A 502 1 HET NA A 503 1 HET NA A 504 1 HET CL A 505 1 HET CL A 506 1 HET CL A 507 1 HETNAM CYS CYSTEINE HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 2 CYS C3 H7 N O2 S FORMUL 3 NA 3(NA 1+) FORMUL 6 CL 3(CL 1-) FORMUL 9 HOH *88(H2 O) HELIX 1 AA1 ALA A 365 THR A 369 5 5 HELIX 2 AA2 THR A 371 PHE A 384 1 14 SHEET 1 AA1 2 GLN A 328 THR A 330 0 SHEET 2 AA1 2 GLU A 355 LYS A 357 -1 O GLU A 355 N THR A 330 SHEET 1 AA2 2 ARG A 333 ASN A 335 0 SHEET 2 AA2 2 GLU A 350 GLU A 352 -1 O TYR A 351 N VAL A 334 SHEET 1 AA3 3 ILE A 345 ALA A 347 0 SHEET 2 AA3 3 CYS A 393 LYS A 406 -1 O LEU A 404 N ALA A 347 SHEET 3 AA3 3 PRO A 412 CYS A 428 -1 O THR A 413 N TYR A 405 SSBOND 1 CYS A 327 CYS A 393 1555 1555 2.03 SSBOND 2 CYS A 356 CYS A 426 1555 1555 2.04 SSBOND 3 CYS A 360 CYS A 428 1555 1555 2.03 SSBOND 4 CYS A 392 CYS A 501 1555 1555 2.02 LINK OG1 THR A 386 NA NA A 502 1555 1555 2.76 LINK OH TYR A 416 NA NA A 503 1555 1555 2.82 LINK NA NA A 503 O HOH A 638 1555 10655 2.99 LINK NA NA A 503 O HOH A 672 1555 1555 2.98 CISPEP 1 ALA A 347 PRO A 348 0 -1.15 CISPEP 2 PHE A 362 PRO A 363 0 1.23 CRYST1 71.863 71.863 144.606 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013915 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013915 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006915 0.00000 CONECT 40 1095 CONECT 512 1614 CONECT 558 1631 CONECT 975 1675 CONECT 1085 1667 CONECT 1095 40 CONECT 1462 1676 CONECT 1614 512 CONECT 1631 558 CONECT 1667 1085 CONECT 1675 975 CONECT 1676 1462 1752 CONECT 1752 1676 MASTER 425 0 7 2 7 0 0 6 927 1 13 9 END