HEADER SIGNALING PROTEIN 23-SEP-24 9DPP TITLE BMP-9 WILD-TYPE DIMER IN ACIDIC PH COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH/DIFFERENTIATION FACTOR 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GDF-2,BONE MORPHOGENETIC PROTEIN 9,BMP-9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GDF2, BMP9; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: EXPI293 (INVITROGEN); SOURCE 9 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 10 EXPRESSION_SYSTEM_TISSUE: EMBRYONIC; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PCDNA3.1 KEYWDS SIGNALING PROTEIN, BMP, BONE MORPHOGENETIC PROTEIN, TGF-BETA FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR T.A.SCHWARTZE,A.P.HINCK REVDAT 1 05-MAR-25 9DPP 0 JRNL AUTH T.A.SCHWARTZE,S.A.MOROSKY,T.L.ROSATO,A.HENRICKSON,G.LIN, JRNL AUTH 2 C.S.HINCK,A.B.TAYLOR,S.K.OLSEN,G.CALERO,B.DEMELER,B.L.ROMAN, JRNL AUTH 3 A.P.HINCK JRNL TITL MOLECULAR BASIS OF INTERCHAIN DISULFIDE BOND FORMATION IN JRNL TITL 2 BMP-9 AND BMP-10. JRNL REF J.MOL.BIOL. V. 437 68935 2025 JRNL REFN ESSN 1089-8638 JRNL PMID 39793884 JRNL DOI 10.1016/J.JMB.2025.168935 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.4700 - 3.3700 1.00 2741 126 0.2100 0.2491 REMARK 3 2 3.3600 - 2.6700 1.00 2579 144 0.2156 0.2412 REMARK 3 3 2.6700 - 2.3300 1.00 2548 145 0.2357 0.3155 REMARK 3 4 2.3300 - 2.1200 1.00 2544 122 0.2841 0.2786 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.304 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.876 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 868 REMARK 3 ANGLE : 1.557 1176 REMARK 3 CHIRALITY : 0.080 128 REMARK 3 PLANARITY : 0.012 147 REMARK 3 DIHEDRAL : 13.558 317 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 324 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0116 -15.5406 -20.2257 REMARK 3 T TENSOR REMARK 3 T11: 0.4997 T22: 0.8193 REMARK 3 T33: 0.6489 T12: 0.0534 REMARK 3 T13: -0.0482 T23: -0.0535 REMARK 3 L TENSOR REMARK 3 L11: 9.8116 L22: 9.4298 REMARK 3 L33: 5.7400 L12: 1.4105 REMARK 3 L13: -7.4111 L23: 0.0996 REMARK 3 S TENSOR REMARK 3 S11: -0.7991 S12: -1.0759 S13: -0.8097 REMARK 3 S21: 0.6465 S22: 0.0725 S23: -0.7587 REMARK 3 S31: 1.3747 S32: 2.2632 S33: 0.7291 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 336 THROUGH 357 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0476 -12.2629 -34.7642 REMARK 3 T TENSOR REMARK 3 T11: 0.7260 T22: 0.7363 REMARK 3 T33: 0.5244 T12: -0.2108 REMARK 3 T13: 0.0212 T23: -0.1144 REMARK 3 L TENSOR REMARK 3 L11: 6.0636 L22: 5.0155 REMARK 3 L33: 2.0119 L12: 0.3905 REMARK 3 L13: -0.4668 L23: 1.2489 REMARK 3 S TENSOR REMARK 3 S11: -0.7051 S12: 0.8520 S13: -0.4987 REMARK 3 S21: -0.9223 S22: 0.4416 S23: -0.4394 REMARK 3 S31: 1.0429 S32: 1.1139 S33: -0.0669 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 358 THROUGH 371 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2446 -13.1401 -6.6427 REMARK 3 T TENSOR REMARK 3 T11: 0.5071 T22: 0.8071 REMARK 3 T33: 0.5784 T12: 0.0833 REMARK 3 T13: -0.0439 T23: 0.1372 REMARK 3 L TENSOR REMARK 3 L11: 5.4982 L22: 4.6304 REMARK 3 L33: 8.3296 L12: -3.2665 REMARK 3 L13: 1.6111 L23: -4.3091 REMARK 3 S TENSOR REMARK 3 S11: -0.5308 S12: -1.6729 S13: 0.1385 REMARK 3 S21: 0.0621 S22: -0.2276 S23: -0.8140 REMARK 3 S31: -0.2145 S32: 1.1020 S33: 1.0221 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 372 THROUGH 392 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.5653 -18.8983 -7.3728 REMARK 3 T TENSOR REMARK 3 T11: 0.5508 T22: 0.4960 REMARK 3 T33: 0.4627 T12: 0.0158 REMARK 3 T13: -0.0382 T23: 0.0982 REMARK 3 L TENSOR REMARK 3 L11: 7.7220 L22: 3.7687 REMARK 3 L33: 3.7071 L12: -0.9656 REMARK 3 L13: -0.9107 L23: -2.7835 REMARK 3 S TENSOR REMARK 3 S11: -0.1491 S12: -0.2106 S13: -1.0950 REMARK 3 S21: -0.2426 S22: 0.2220 S23: -0.5805 REMARK 3 S31: 0.7362 S32: -0.5794 S33: 0.1584 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 393 THROUGH 397 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9772 -8.4458 -18.0565 REMARK 3 T TENSOR REMARK 3 T11: 0.3348 T22: 0.4965 REMARK 3 T33: 0.4214 T12: -0.1695 REMARK 3 T13: -0.1844 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 2.0027 L22: 2.1021 REMARK 3 L33: 7.7882 L12: -1.4968 REMARK 3 L13: -5.5535 L23: 3.8214 REMARK 3 S TENSOR REMARK 3 S11: -0.7644 S12: 0.2944 S13: 1.9981 REMARK 3 S21: -0.3521 S22: 0.6250 S23: -0.5827 REMARK 3 S31: -1.7466 S32: 0.8582 S33: 0.3829 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 398 THROUGH 429 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8195 -2.4937 -33.5806 REMARK 3 T TENSOR REMARK 3 T11: 0.6434 T22: 0.5928 REMARK 3 T33: 0.4811 T12: -0.1438 REMARK 3 T13: -0.0324 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 5.1090 L22: 2.4509 REMARK 3 L33: 2.6885 L12: 0.9610 REMARK 3 L13: -0.9927 L23: -0.3281 REMARK 3 S TENSOR REMARK 3 S11: -0.0767 S12: 0.7406 S13: 0.5970 REMARK 3 S21: -0.3764 S22: 0.2738 S23: -0.0026 REMARK 3 S31: -0.8769 S32: 0.2347 S33: -0.2154 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9DPP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1000287365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10969 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 35.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 24.60 REMARK 200 R MERGE (I) : 0.15800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.90 REMARK 200 R MERGE FOR SHELL (I) : 2.58800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M NACL, 3.5% PEG8K, 0.3M CITRATE PH REMARK 280 3.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.47000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 35.47000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.93000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.47000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.46500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.47000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 109.39500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.47000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 109.39500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.47000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.46500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 35.47000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 35.47000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.93000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 35.47000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 35.47000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 72.93000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 35.47000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 109.39500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 35.47000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 36.46500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 35.47000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 36.46500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 35.47000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 109.39500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 35.47000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 35.47000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.93000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -35.47000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -36.46500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 507 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 320 REMARK 465 SER A 321 REMARK 465 GLY A 322 REMARK 465 ALA A 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 354 161.36 67.11 REMARK 500 THR A 369 57.89 37.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 512 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 395 O REMARK 620 2 HOH A 607 O 101.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 514 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 616 O REMARK 620 2 HOH A 623 O 131.8 REMARK 620 N 1 DBREF 9DPP A 320 429 UNP Q9UK05 GDF2_HUMAN 320 429 SEQADV 9DPP SER A 321 UNP Q9UK05 ALA 321 ENGINEERED MUTATION SEQRES 1 A 110 SER SER GLY ALA GLY SER HIS CYS GLN LYS THR SER LEU SEQRES 2 A 110 ARG VAL ASN PHE GLU ASP ILE GLY TRP ASP SER TRP ILE SEQRES 3 A 110 ILE ALA PRO LYS GLU TYR GLU ALA TYR GLU CYS LYS GLY SEQRES 4 A 110 GLY CYS PHE PHE PRO LEU ALA ASP ASP VAL THR PRO THR SEQRES 5 A 110 LYS HIS ALA ILE VAL GLN THR LEU VAL HIS LEU LYS PHE SEQRES 6 A 110 PRO THR LYS VAL GLY LYS ALA CYS CYS VAL PRO THR LYS SEQRES 7 A 110 LEU SER PRO ILE SER VAL LEU TYR LYS ASP ASP MET GLY SEQRES 8 A 110 VAL PRO THR LEU LYS TYR HIS TYR GLU GLY MET SER VAL SEQRES 9 A 110 ALA GLU CYS GLY CYS ARG HET GOL A 501 14 HET GOL A 502 14 HET CL A 503 1 HET CL A 504 1 HET CL A 505 1 HET CL A 506 1 HET CL A 507 1 HET CL A 508 1 HET CL A 509 1 HET CL A 510 1 HET CL A 511 1 HET NA A 512 1 HET NA A 513 1 HET NA A 514 1 HET NA A 515 1 HET NA A 516 1 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 CL 9(CL 1-) FORMUL 13 NA 5(NA 1+) FORMUL 18 HOH *52(H2 O) HELIX 1 AA1 GLY A 340 SER A 343 5 4 HELIX 2 AA2 THR A 371 PHE A 384 1 14 SHEET 1 AA1 2 GLN A 328 THR A 330 0 SHEET 2 AA1 2 GLU A 355 LYS A 357 -1 O LYS A 357 N GLN A 328 SHEET 1 AA2 2 ARG A 333 ASN A 335 0 SHEET 2 AA2 2 GLU A 350 GLU A 352 -1 O TYR A 351 N VAL A 334 SHEET 1 AA3 3 ILE A 345 ALA A 347 0 SHEET 2 AA3 3 CYS A 393 LYS A 406 -1 O LEU A 404 N ILE A 346 SHEET 3 AA3 3 PRO A 412 CYS A 428 -1 O THR A 413 N TYR A 405 SSBOND 1 CYS A 327 CYS A 393 1555 1555 2.04 SSBOND 2 CYS A 356 CYS A 426 1555 1555 2.01 SSBOND 3 CYS A 360 CYS A 428 1555 1555 2.02 SSBOND 4 CYS A 392 CYS A 392 1555 5454 2.04 LINK OG1 THR A 386 NA NA A 515 1555 1555 2.56 LINK O PRO A 395 NA NA A 512 1555 1555 2.92 LINK NA NA A 512 O HOH A 607 1555 5454 2.96 LINK NA NA A 514 O HOH A 616 1555 1555 2.57 LINK NA NA A 514 O HOH A 623 1555 1555 2.95 CISPEP 1 ALA A 347 PRO A 348 0 -1.05 CISPEP 2 PHE A 362 PRO A 363 0 1.53 CRYST1 70.940 70.940 145.860 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014096 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014096 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006856 0.00000