HEADER SIGNALING PROTEIN 23-SEP-24 9DPQ TITLE BMP-9 WILD-TYPE DIMER WITHOUT RADIATION DAMAGE IN ACIDIC PH COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH/DIFFERENTIATION FACTOR 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GDF-2,BONE MORPHOGENETIC PROTEIN 9,BMP-9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GDF2, BMP9; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: EXPI293 (INVITROGEN); SOURCE 9 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 10 EXPRESSION_SYSTEM_TISSUE: EMBRYONIC; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PCDNA3.1 KEYWDS SIGNALING PROTEIN, BMP, BONE MORPHOGENETIC PROTEIN, TGF-BETA FAMILY EXPDTA X-RAY DIFFRACTION AUTHOR T.A.SCHWARTZE,A.P.HINCK REVDAT 1 05-MAR-25 9DPQ 0 JRNL AUTH T.A.SCHWARTZE,S.A.MOROSKY,T.L.ROSATO,A.HENRICKSON,G.LIN, JRNL AUTH 2 C.S.HINCK,A.B.TAYLOR,S.K.OLSEN,G.CALERO,B.DEMELER,B.L.ROMAN, JRNL AUTH 3 A.P.HINCK JRNL TITL MOLECULAR BASIS OF INTERCHAIN DISULFIDE BOND FORMATION IN JRNL TITL 2 BMP-9 AND BMP-10. JRNL REF J.MOL.BIOL. V. 437 68935 2025 JRNL REFN ESSN 1089-8638 JRNL PMID 39793884 JRNL DOI 10.1016/J.JMB.2025.168935 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 7852 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.580 REMARK 3 FREE R VALUE TEST SET COUNT : 438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3400 - 3.3900 0.96 2557 154 0.1832 0.2344 REMARK 3 2 3.3900 - 2.6900 0.96 2450 127 0.2099 0.2391 REMARK 3 3 2.6900 - 2.3500 0.97 2407 157 0.2524 0.3222 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.316 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.772 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 864 REMARK 3 ANGLE : 0.823 1167 REMARK 3 CHIRALITY : 0.041 126 REMARK 3 PLANARITY : 0.005 145 REMARK 3 DIHEDRAL : 10.161 315 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 324 THROUGH 357 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1556 -4.7264 6.3985 REMARK 3 T TENSOR REMARK 3 T11: 0.3403 T22: 0.3016 REMARK 3 T33: 0.3333 T12: 0.1067 REMARK 3 T13: 0.0531 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 6.6231 L22: 6.6540 REMARK 3 L33: 3.4430 L12: -0.7397 REMARK 3 L13: -0.2240 L23: -2.4019 REMARK 3 S TENSOR REMARK 3 S11: 0.2630 S12: 0.4509 S13: 0.3384 REMARK 3 S21: 0.0102 S22: -0.3922 S23: -0.2566 REMARK 3 S31: -1.3213 S32: 0.1841 S33: 0.0822 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 358 THROUGH 371 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5418 -12.2640 29.7193 REMARK 3 T TENSOR REMARK 3 T11: 0.6310 T22: 0.3192 REMARK 3 T33: 0.5067 T12: -0.0175 REMARK 3 T13: -0.0523 T23: -0.0457 REMARK 3 L TENSOR REMARK 3 L11: 7.9356 L22: 5.4362 REMARK 3 L33: 9.0050 L12: 5.8876 REMARK 3 L13: 5.0220 L23: 1.2670 REMARK 3 S TENSOR REMARK 3 S11: -0.4248 S12: -0.4509 S13: 1.2950 REMARK 3 S21: 0.4150 S22: -0.5379 S23: 0.4424 REMARK 3 S31: -2.0237 S32: -0.4389 S33: 0.8049 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 372 THROUGH 392 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7609 -23.7257 28.8085 REMARK 3 T TENSOR REMARK 3 T11: 0.4085 T22: 0.3538 REMARK 3 T33: 0.3090 T12: -0.0374 REMARK 3 T13: -0.0455 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 9.1414 L22: 7.9730 REMARK 3 L33: 2.4804 L12: -2.6698 REMARK 3 L13: 4.5434 L23: -2.5532 REMARK 3 S TENSOR REMARK 3 S11: 0.1780 S12: 0.1591 S13: -0.1327 REMARK 3 S21: 0.1811 S22: -0.3332 S23: -0.7004 REMARK 3 S31: 0.6782 S32: 0.3427 S33: 0.1072 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 393 THROUGH 429 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.2149 -8.3239 4.7617 REMARK 3 T TENSOR REMARK 3 T11: 0.3973 T22: 0.3740 REMARK 3 T33: 0.3420 T12: 0.1683 REMARK 3 T13: -0.0076 T23: -0.0698 REMARK 3 L TENSOR REMARK 3 L11: 3.6503 L22: 4.9886 REMARK 3 L33: 6.6258 L12: -1.0612 REMARK 3 L13: 2.4645 L23: -2.7690 REMARK 3 S TENSOR REMARK 3 S11: 0.3380 S12: 0.4136 S13: -0.0073 REMARK 3 S21: -0.5115 S22: -0.1108 S23: 0.4898 REMARK 3 S31: 0.1473 S32: -0.7205 S33: -0.1652 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9DPQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1000287367. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7868 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 41.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.20900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 1.47800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M NACL, 3.5% PEG8K, 0.3M SODIUM REMARK 280 CITRATE PH 3.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.52250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 35.52250 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.78350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.52250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.39175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.52250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 109.17525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.52250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 109.17525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.52250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.39175 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 35.52250 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 35.52250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.78350 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 35.52250 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 35.52250 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 72.78350 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 35.52250 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 109.17525 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 35.52250 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 36.39175 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 35.52250 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 36.39175 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 35.52250 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 109.17525 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 35.52250 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 35.52250 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 72.78350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -35.52250 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 36.39175 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 507 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 647 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 320 REMARK 465 SER A 321 REMARK 465 GLY A 322 REMARK 465 ALA A 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 354 169.90 62.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 513 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 395 O REMARK 620 2 HOH A 605 O 107.8 REMARK 620 N 1 DBREF 9DPQ A 320 429 UNP Q9UK05 GDF2_HUMAN 320 429 SEQADV 9DPQ SER A 321 UNP Q9UK05 ALA 321 ENGINEERED MUTATION SEQRES 1 A 110 SER SER GLY ALA GLY SER HIS CYS GLN LYS THR SER LEU SEQRES 2 A 110 ARG VAL ASN PHE GLU ASP ILE GLY TRP ASP SER TRP ILE SEQRES 3 A 110 ILE ALA PRO LYS GLU TYR GLU ALA TYR GLU CYS LYS GLY SEQRES 4 A 110 GLY CYS PHE PHE PRO LEU ALA ASP ASP VAL THR PRO THR SEQRES 5 A 110 LYS HIS ALA ILE VAL GLN THR LEU VAL HIS LEU LYS PHE SEQRES 6 A 110 PRO THR LYS VAL GLY LYS ALA CYS CYS VAL PRO THR LYS SEQRES 7 A 110 LEU SER PRO ILE SER VAL LEU TYR LYS ASP ASP MET GLY SEQRES 8 A 110 VAL PRO THR LEU LYS TYR HIS TYR GLU GLY MET SER VAL SEQRES 9 A 110 ALA GLU CYS GLY CYS ARG HET GOL A 501 14 HET GOL A 502 28 HET CL A 503 1 HET CL A 504 1 HET CL A 505 1 HET CL A 506 1 HET CL A 507 1 HET CL A 508 1 HET CL A 509 1 HET CL A 510 1 HET CL A 511 1 HET CL A 512 1 HET NA A 513 1 HET NA A 514 1 HET NA A 515 1 HET NA A 516 1 HET NA A 517 1 HET NA A 518 1 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 CL 10(CL 1-) FORMUL 14 NA 6(NA 1+) FORMUL 20 HOH *62(H2 O) HELIX 1 AA1 THR A 371 PHE A 384 1 14 SHEET 1 AA1 2 GLN A 328 THR A 330 0 SHEET 2 AA1 2 GLU A 355 LYS A 357 -1 O GLU A 355 N THR A 330 SHEET 1 AA2 2 ARG A 333 ASN A 335 0 SHEET 2 AA2 2 GLU A 350 GLU A 352 -1 O TYR A 351 N VAL A 334 SHEET 1 AA3 3 ILE A 345 ALA A 347 0 SHEET 2 AA3 3 CYS A 393 LYS A 406 -1 O LEU A 404 N ALA A 347 SHEET 3 AA3 3 PRO A 412 CYS A 428 -1 O THR A 413 N TYR A 405 SSBOND 1 CYS A 327 CYS A 393 1555 1555 2.03 SSBOND 2 CYS A 356 CYS A 426 1555 1555 2.03 SSBOND 3 CYS A 360 CYS A 428 1555 1555 2.02 SSBOND 4 CYS A 392 CYS A 392 1555 6545 2.04 LINK OG1 THR A 386 NA NA A 517 1555 1555 2.87 LINK O PRO A 395 NA NA A 513 1555 1555 2.82 LINK NA NA A 513 O HOH A 605 1555 6545 2.59 LINK NA NA A 514 O HOH A 635 1555 1555 2.93 LINK NA NA A 516 O HOH A 615 1555 1555 3.06 CISPEP 1 ALA A 347 PRO A 348 0 -1.52 CISPEP 2 PHE A 362 PRO A 363 0 0.64 CRYST1 71.045 71.045 145.567 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014076 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014076 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006870 0.00000 CONECT 40 1076 CONECT 512 1587 CONECT 558 1604 CONECT 975 1691 CONECT 1076 40 CONECT 1100 1687 CONECT 1587 512 CONECT 1604 558 CONECT 1635 1636 1637 1641 1642 CONECT 1636 1635 1643 CONECT 1637 1635 1638 1639 1644 CONECT 1638 1637 1645 CONECT 1639 1637 1640 1646 1647 CONECT 1640 1639 1648 CONECT 1641 1635 CONECT 1642 1635 CONECT 1643 1636 CONECT 1644 1637 CONECT 1645 1638 CONECT 1646 1639 CONECT 1647 1639 CONECT 1648 1640 CONECT 1649 1651 1653 1661 1663 CONECT 1650 1652 1654 1662 1664 CONECT 1651 1649 1665 CONECT 1652 1650 1666 CONECT 1653 1649 1655 1657 1667 CONECT 1654 1650 1656 1658 1668 CONECT 1655 1653 1669 CONECT 1656 1654 1670 CONECT 1657 1653 1659 1671 1673 CONECT 1658 1654 1660 1672 1674 CONECT 1659 1657 1675 CONECT 1660 1658 1676 CONECT 1661 1649 CONECT 1662 1650 CONECT 1663 1649 CONECT 1664 1650 CONECT 1665 1651 CONECT 1666 1652 CONECT 1667 1653 CONECT 1668 1654 CONECT 1669 1655 CONECT 1670 1656 CONECT 1671 1657 CONECT 1672 1658 CONECT 1673 1657 CONECT 1674 1658 CONECT 1675 1659 CONECT 1676 1660 CONECT 1687 1100 CONECT 1688 1727 CONECT 1690 1707 CONECT 1691 975 CONECT 1707 1690 CONECT 1727 1688 MASTER 351 0 18 1 7 0 0 6 916 1 56 9 END