HEADER OXIDOREDUCTASE 23-SEP-24 9DQ2 TITLE CRYSTAL STRUCTURE OF HRMJ FROM STREPTOMYCES SP. CFMR 7 (HRMJ-SSC) TITLE 2 COMPLEXED WITH VANADYL(IV)-OXO, SUCCINATE AND 6-NITRONORLEUCINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BSMA DOMAIN CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. CFMR 7; SOURCE 3 ORGANISM_TAXID: 1649184; SOURCE 4 GENE: ABE83_05625; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CYCLOPROPANASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.-C.ZHENG,W.-C.CHANG REVDAT 1 12-FEB-25 9DQ2 0 JRNL AUTH Y.C.ZHENG,X.LI,L.CHA,J.C.PARIS,C.MICHAEL,R.USHIMARU, JRNL AUTH 2 Y.OGASAWARA,I.ABE,Y.GUO,W.C.CHANG JRNL TITL COMPARISON OF A NONHEME IRON CYCLOPROPANASE WITH A JRNL TITL 2 HOMOLOGOUS HYDROXYLASE REVEALS MECHANISTIC FEATURES JRNL TITL 3 ASSOCIATED WITH DISTINCT REACTION OUTCOMES. JRNL REF J.AM.CHEM.SOC. 2025 JRNL REFN ESSN 1520-5126 JRNL PMID 39901767 JRNL DOI 10.1021/JACS.4C17741 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 81626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 4007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3600 - 4.7600 0.98 2914 151 0.2107 0.1989 REMARK 3 2 4.7600 - 3.7800 0.97 2759 153 0.1720 0.1610 REMARK 3 3 3.7800 - 3.3000 0.97 2741 137 0.1782 0.1843 REMARK 3 4 3.3000 - 3.0000 0.98 2753 138 0.1930 0.1939 REMARK 3 5 3.0000 - 2.7800 0.98 2743 130 0.1922 0.2400 REMARK 3 6 2.7800 - 2.6200 0.97 2745 102 0.2002 0.2066 REMARK 3 7 2.6200 - 2.4900 0.97 2703 131 0.2010 0.2603 REMARK 3 8 2.4900 - 2.3800 0.97 2693 137 0.1998 0.2226 REMARK 3 9 2.3800 - 2.2900 0.97 2708 122 0.1810 0.1927 REMARK 3 10 2.2900 - 2.2100 0.98 2691 121 0.1818 0.2148 REMARK 3 11 2.2100 - 2.1400 0.97 2688 142 0.1885 0.2226 REMARK 3 12 2.1400 - 2.0800 0.98 2649 156 0.1806 0.2079 REMARK 3 13 2.0800 - 2.0300 0.97 2646 165 0.1838 0.1860 REMARK 3 14 2.0300 - 1.9800 0.97 2657 145 0.1878 0.2022 REMARK 3 15 1.9800 - 1.9300 0.97 2676 132 0.1834 0.2171 REMARK 3 16 1.9300 - 1.8900 0.97 2617 179 0.2129 0.2057 REMARK 3 17 1.8900 - 1.8500 0.98 2675 148 0.2125 0.2369 REMARK 3 18 1.8500 - 1.8200 0.98 2673 158 0.2121 0.2256 REMARK 3 19 1.8200 - 1.7800 0.98 2657 125 0.2028 0.2199 REMARK 3 20 1.7800 - 1.7500 0.98 2693 113 0.1945 0.2325 REMARK 3 21 1.7500 - 1.7300 0.98 2721 142 0.1992 0.2249 REMARK 3 22 1.7300 - 1.7000 0.98 2692 113 0.1958 0.2061 REMARK 3 23 1.7000 - 1.6700 0.99 2682 143 0.2040 0.2267 REMARK 3 24 1.6700 - 1.6500 0.98 2689 148 0.2102 0.2412 REMARK 3 25 1.6500 - 1.6300 0.98 2662 137 0.2194 0.2502 REMARK 3 26 1.6300 - 1.6100 0.97 2681 136 0.2331 0.2874 REMARK 3 27 1.6100 - 1.5900 0.96 2599 126 0.2508 0.2964 REMARK 3 28 1.5900 - 1.5700 0.94 2527 137 0.2535 0.2624 REMARK 3 29 1.5700 - 1.5500 0.84 2285 140 0.3039 0.3280 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.224 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3855 REMARK 3 ANGLE : 1.209 5254 REMARK 3 CHIRALITY : 0.075 546 REMARK 3 PLANARITY : 0.014 702 REMARK 3 DIHEDRAL : 13.823 1429 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9DQ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1000288597. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84079 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.17200 REMARK 200 R SYM (I) : 0.17200 REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NABR; 20% (W/V) PEG 3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.55650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.58300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.41800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.58300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.55650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.41800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 228 REMARK 465 GLU A 229 REMARK 465 ALA A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 465 MET B 1 REMARK 465 GLN B 228 REMARK 465 GLU B 229 REMARK 465 ALA B 230 REMARK 465 HIS B 231 REMARK 465 HIS B 232 REMARK 465 HIS B 233 REMARK 465 HIS B 234 REMARK 465 HIS B 235 REMARK 465 HIS B 236 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 79 O HOH A 401 1.65 REMARK 500 OE1 GLU A 6 O HOH A 402 1.66 REMARK 500 OE1 GLU B 6 O HOH B 401 1.74 REMARK 500 O HOH A 588 O HOH A 676 1.75 REMARK 500 O HOH A 561 O HOH A 673 1.75 REMARK 500 O LEU A 3 O HOH A 403 1.78 REMARK 500 O HOH B 431 O HOH B 465 1.79 REMARK 500 O HOH B 530 O HOH B 628 1.80 REMARK 500 O HOH A 567 O HOH A 647 1.82 REMARK 500 NH1 ARG A 118 O HOH A 404 1.83 REMARK 500 OE1 GLU A 226 O HOH A 405 1.84 REMARK 500 O HOH A 651 O HOH A 660 1.84 REMARK 500 O HOH A 705 O HOH A 724 1.85 REMARK 500 O HOH A 580 O HOH A 583 1.87 REMARK 500 O HOH B 627 O HOH B 698 1.87 REMARK 500 OG SER B 105 O HOH B 402 1.88 REMARK 500 OE1 GLU B 226 O HOH B 403 1.88 REMARK 500 NZ LYS A 58 O HOH A 406 1.89 REMARK 500 O HOH A 570 O HOH A 691 1.89 REMARK 500 O HOH B 416 O HOH B 620 1.89 REMARK 500 O HOH B 569 O HOH B 644 1.90 REMARK 500 O HOH A 547 O HOH A 636 1.91 REMARK 500 OG SER A 56 O HOH A 407 1.92 REMARK 500 OE1 GLU A 227 O HOH A 408 1.92 REMARK 500 BR BR A 306 O HOH A 643 1.93 REMARK 500 O HOH A 646 O HOH A 716 1.95 REMARK 500 O HOH B 668 O HOH B 683 1.96 REMARK 500 O HOH A 471 O HOH A 518 1.96 REMARK 500 NH2 ARG B 79 O HOH B 404 2.00 REMARK 500 O HOH A 535 O HOH A 628 2.01 REMARK 500 O HOH B 657 O HOH B 702 2.02 REMARK 500 O HOH B 684 O HOH B 710 2.03 REMARK 500 O HOH A 735 O HOH A 736 2.04 REMARK 500 O HOH A 625 O HOH A 629 2.04 REMARK 500 BR BR B 307 O HOH B 651 2.04 REMARK 500 O HOH B 625 O HOH B 705 2.05 REMARK 500 O HOH B 665 O HOH B 698 2.05 REMARK 500 O HOH A 655 O HOH A 656 2.05 REMARK 500 O HOH B 519 O HOH B 674 2.06 REMARK 500 O HOH A 573 O HOH A 677 2.07 REMARK 500 O GLU B 15 O HOH B 405 2.07 REMARK 500 O HOH A 657 O HOH A 692 2.07 REMARK 500 O HOH A 411 O HOH A 427 2.09 REMARK 500 O HOH A 431 O HOH A 659 2.09 REMARK 500 OD1 ASN A 146 O HOH A 409 2.09 REMARK 500 O HOH B 714 O HOH B 719 2.10 REMARK 500 O HOH A 653 O HOH A 671 2.11 REMARK 500 O HOH B 619 O HOH B 712 2.11 REMARK 500 O HOH A 529 O HOH A 701 2.11 REMARK 500 O HOH B 596 O HOH B 637 2.11 REMARK 500 REMARK 500 THIS ENTRY HAS 61 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 415 O HOH B 508 3554 1.85 REMARK 500 O HOH A 660 O HOH B 691 2555 1.92 REMARK 500 O HOH A 586 O HOH B 537 2455 2.10 REMARK 500 O HOH A 696 O HOH B 648 2555 2.13 REMARK 500 BR BR A 308 O HOH B 636 2455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 145 CA - CB - CG ANGL. DEV. = -18.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 215 53.21 -97.42 REMARK 500 TRP B 215 53.91 -95.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 201 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 726 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 727 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 728 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH A 729 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A 730 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH A 731 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH A 732 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH A 733 DISTANCE = 7.18 ANGSTROMS REMARK 525 HOH A 734 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH A 735 DISTANCE = 8.92 ANGSTROMS REMARK 525 HOH A 736 DISTANCE = 9.18 ANGSTROMS REMARK 525 HOH A 737 DISTANCE = 10.26 ANGSTROMS REMARK 525 HOH B 714 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH B 715 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B 716 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B 717 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B 718 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH B 719 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH B 720 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH B 721 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH B 722 DISTANCE = 7.41 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VVO A 302 V1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 133 NE2 REMARK 620 2 VVO A 302 O1 91.8 REMARK 620 3 ASP A 135 OD1 88.8 95.9 REMARK 620 4 HIS A 186 NE2 82.5 172.1 89.5 REMARK 620 5 SIN A 303 O1 95.0 91.3 171.8 83.7 REMARK 620 6 HOH A 419 O 169.9 97.4 86.2 88.7 88.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VVO B 302 V1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 133 NE2 REMARK 620 2 VVO B 302 O1 91.6 REMARK 620 3 ASP B 135 OD1 90.0 95.6 REMARK 620 4 HIS B 186 NE2 81.4 171.6 89.1 REMARK 620 5 SIN B 303 O3 91.3 90.6 173.7 85.0 REMARK 620 6 HOH B 428 O 169.2 99.2 87.6 88.0 90.0 REMARK 620 N 1 2 3 4 5 DBREF1 9DQ2 A 1 230 UNP A0A0M5J3M0_9ACTN DBREF2 9DQ2 A A0A0M5J3M0 1 230 DBREF1 9DQ2 B 1 230 UNP A0A0M5J3M0_9ACTN DBREF2 9DQ2 B A0A0M5J3M0 1 230 SEQADV 9DQ2 HIS A 231 UNP A0A0M5J3M EXPRESSION TAG SEQADV 9DQ2 HIS A 232 UNP A0A0M5J3M EXPRESSION TAG SEQADV 9DQ2 HIS A 233 UNP A0A0M5J3M EXPRESSION TAG SEQADV 9DQ2 HIS A 234 UNP A0A0M5J3M EXPRESSION TAG SEQADV 9DQ2 HIS A 235 UNP A0A0M5J3M EXPRESSION TAG SEQADV 9DQ2 HIS A 236 UNP A0A0M5J3M EXPRESSION TAG SEQADV 9DQ2 HIS B 231 UNP A0A0M5J3M EXPRESSION TAG SEQADV 9DQ2 HIS B 232 UNP A0A0M5J3M EXPRESSION TAG SEQADV 9DQ2 HIS B 233 UNP A0A0M5J3M EXPRESSION TAG SEQADV 9DQ2 HIS B 234 UNP A0A0M5J3M EXPRESSION TAG SEQADV 9DQ2 HIS B 235 UNP A0A0M5J3M EXPRESSION TAG SEQADV 9DQ2 HIS B 236 UNP A0A0M5J3M EXPRESSION TAG SEQRES 1 A 236 MET PRO LEU GLY THR GLU GLY PHE THR VAL ILE ASP LEU SEQRES 2 A 236 PRO GLU VAL ALA PRO ASP ILE LEU PRO SER TYR ASP ARG SEQRES 3 A 236 CYS PRO VAL ASP ASP TYR MET GLY ASN GLY THR ARG PHE SEQRES 4 A 236 LYS ARG PHE SER GLN TYR LYS LEU THR PRO ALA GLU ASP SEQRES 5 A 236 ASP THR TRP SER PHE LYS ARG LEU PRO HIS ARG ASP TYR SEQRES 6 A 236 THR THR TYR LYS LYS PHE ASN PRO VAL GLY GLY GLY ILE SEQRES 7 A 236 ARG ARG VAL TYR GLU PRO ILE GLU VAL ASP PHE THR PRO SEQRES 8 A 236 LEU ILE SER GLU GLY ILE ARG GLU LEU GLY LEU ASP ARG SEQRES 9 A 236 SER GLU PRO TRP GLN ILE ASN VAL HIS GLN ASN ARG THR SEQRES 10 A 236 ARG ALA ASP GLY GLY ARG PRO GLY PRO LEU THR PRO GLU SEQRES 11 A 236 GLY VAL HIS HIS ASP GLY HIS GLU PHE VAL MET ILE ALA SEQRES 12 A 236 ILE LEU ASN LYS VAL ASN VAL ALA GLY GLY THR THR ARG SEQRES 13 A 236 LEU TRP LYS PRO GLY ALA ASP ALA PRO PHE TRP SER GLY SEQRES 14 A 236 THR LEU GLU ALA GLY GLN ALA VAL LEU LEU ASP ASP ARG SEQRES 15 A 236 GLY LEU ALA HIS ASP VAL THR ASP VAL LEU SER ALA ASP SEQRES 16 A 236 GLY GLY PRO GLY HIS ARG ASP ILE VAL ILE ILE ALA PHE SEQRES 17 A 236 SER ARG TRP ALA GLU LYS TRP TYR GLY ASP GLU HIS ASP SEQRES 18 A 236 ALA ALA ALA LEU GLU GLU GLN GLU ALA HIS HIS HIS HIS SEQRES 19 A 236 HIS HIS SEQRES 1 B 236 MET PRO LEU GLY THR GLU GLY PHE THR VAL ILE ASP LEU SEQRES 2 B 236 PRO GLU VAL ALA PRO ASP ILE LEU PRO SER TYR ASP ARG SEQRES 3 B 236 CYS PRO VAL ASP ASP TYR MET GLY ASN GLY THR ARG PHE SEQRES 4 B 236 LYS ARG PHE SER GLN TYR LYS LEU THR PRO ALA GLU ASP SEQRES 5 B 236 ASP THR TRP SER PHE LYS ARG LEU PRO HIS ARG ASP TYR SEQRES 6 B 236 THR THR TYR LYS LYS PHE ASN PRO VAL GLY GLY GLY ILE SEQRES 7 B 236 ARG ARG VAL TYR GLU PRO ILE GLU VAL ASP PHE THR PRO SEQRES 8 B 236 LEU ILE SER GLU GLY ILE ARG GLU LEU GLY LEU ASP ARG SEQRES 9 B 236 SER GLU PRO TRP GLN ILE ASN VAL HIS GLN ASN ARG THR SEQRES 10 B 236 ARG ALA ASP GLY GLY ARG PRO GLY PRO LEU THR PRO GLU SEQRES 11 B 236 GLY VAL HIS HIS ASP GLY HIS GLU PHE VAL MET ILE ALA SEQRES 12 B 236 ILE LEU ASN LYS VAL ASN VAL ALA GLY GLY THR THR ARG SEQRES 13 B 236 LEU TRP LYS PRO GLY ALA ASP ALA PRO PHE TRP SER GLY SEQRES 14 B 236 THR LEU GLU ALA GLY GLN ALA VAL LEU LEU ASP ASP ARG SEQRES 15 B 236 GLY LEU ALA HIS ASP VAL THR ASP VAL LEU SER ALA ASP SEQRES 16 B 236 GLY GLY PRO GLY HIS ARG ASP ILE VAL ILE ILE ALA PHE SEQRES 17 B 236 SER ARG TRP ALA GLU LYS TRP TYR GLY ASP GLU HIS ASP SEQRES 18 B 236 ALA ALA ALA LEU GLU GLU GLN GLU ALA HIS HIS HIS HIS SEQRES 19 B 236 HIS HIS HET 6HN A 301 12 HET VVO A 302 2 HET SIN A 303 8 HET GOL A 304 6 HET GOL A 305 6 HET BR A 306 1 HET BR A 307 1 HET BR A 308 1 HET 6HN B 301 12 HET VVO B 302 2 HET SIN B 303 8 HET GOL B 304 6 HET GOL B 305 6 HET GOL B 306 6 HET BR B 307 1 HETNAM 6HN 6-NITRO-L-NORLEUCINE HETNAM VVO OXOVANADIUM(2+) HETNAM SIN SUCCINIC ACID HETNAM GOL GLYCEROL HETNAM BR BROMIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 6HN 2(C6 H12 N2 O4) FORMUL 4 VVO 2(O V 2+) FORMUL 5 SIN 2(C4 H6 O4) FORMUL 6 GOL 5(C3 H8 O3) FORMUL 8 BR 4(BR 1-) FORMUL 18 HOH *659(H2 O) HELIX 1 AA1 ASP A 19 TYR A 24 1 6 HELIX 2 AA2 ASP A 25 CYS A 27 5 3 HELIX 3 AA3 PHE A 89 GLY A 101 1 13 HELIX 4 AA4 ALA A 212 LYS A 214 5 3 HELIX 5 AA5 GLY A 217 GLU A 226 1 10 HELIX 6 AA6 ASP B 19 TYR B 24 1 6 HELIX 7 AA7 ASP B 25 CYS B 27 5 3 HELIX 8 AA8 PHE B 89 GLY B 101 1 13 HELIX 9 AA9 ALA B 212 LYS B 214 5 3 HELIX 10 AB1 GLY B 217 LEU B 225 1 9 SHEET 1 AA1 7 PHE A 8 ASP A 12 0 SHEET 2 AA1 7 GLN A 175 ASP A 180 -1 O ALA A 176 N ILE A 11 SHEET 3 AA1 7 PHE A 139 VAL A 148 -1 N ILE A 144 O GLN A 175 SHEET 4 AA1 7 GLY A 199 ARG A 210 -1 O ASP A 202 N ASN A 146 SHEET 5 AA1 7 TRP A 108 ALA A 119 -1 N GLN A 109 O SER A 209 SHEET 6 AA1 7 ARG A 38 ALA A 50 -1 N LEU A 47 O TRP A 108 SHEET 7 AA1 7 THR A 54 ARG A 59 -1 O THR A 54 N ALA A 50 SHEET 1 AA2 2 VAL A 150 GLY A 152 0 SHEET 2 AA2 2 VAL A 191 SER A 193 -1 O LEU A 192 N ALA A 151 SHEET 1 AA3 3 TRP A 167 THR A 170 0 SHEET 2 AA3 3 THR A 154 TRP A 158 -1 N LEU A 157 O TRP A 167 SHEET 3 AA3 3 ALA A 185 VAL A 188 -1 O ASP A 187 N ARG A 156 SHEET 1 AA4 7 PHE B 8 ASP B 12 0 SHEET 2 AA4 7 GLN B 175 ASP B 180 -1 O LEU B 178 N THR B 9 SHEET 3 AA4 7 PHE B 139 VAL B 148 -1 N ILE B 144 O GLN B 175 SHEET 4 AA4 7 GLY B 199 ARG B 210 -1 O ASP B 202 N ASN B 146 SHEET 5 AA4 7 TRP B 108 ALA B 119 -1 N GLN B 109 O SER B 209 SHEET 6 AA4 7 ARG B 38 ALA B 50 -1 N LEU B 47 O TRP B 108 SHEET 7 AA4 7 THR B 54 ARG B 59 -1 O SER B 56 N THR B 48 SHEET 1 AA5 2 VAL B 150 GLY B 152 0 SHEET 2 AA5 2 VAL B 191 SER B 193 -1 O LEU B 192 N ALA B 151 SHEET 1 AA6 3 TRP B 167 THR B 170 0 SHEET 2 AA6 3 THR B 154 TRP B 158 -1 N LEU B 157 O TRP B 167 SHEET 3 AA6 3 ALA B 185 VAL B 188 -1 O ASP B 187 N ARG B 156 LINK NE2 HIS A 133 V1 VVO A 302 1555 1555 2.22 LINK OD1 ASP A 135 V1 VVO A 302 1555 1555 2.17 LINK NE2 HIS A 186 V1 VVO A 302 1555 1555 2.30 LINK V1 VVO A 302 O1 SIN A 303 1555 1555 2.09 LINK V1 VVO A 302 O HOH A 419 1555 1555 2.21 LINK NE2 HIS B 133 V1 VVO B 302 1555 1555 2.25 LINK OD1 ASP B 135 V1 VVO B 302 1555 1555 2.13 LINK NE2 HIS B 186 V1 VVO B 302 1555 1555 2.28 LINK V1 VVO B 302 O3 SIN B 303 1555 1555 2.14 LINK V1 VVO B 302 O HOH B 428 1555 1555 2.10 CRYST1 75.113 78.836 97.166 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013313 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012685 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010292 0.00000