HEADER REPLICATION 25-SEP-24 9DRC TITLE TERNARY SUBSTRATE COMPLEX OF DNA POLYMERASE IOTA R71A MUTANT WITH DNA TITLE 2 (TEMPLATE A) AND DTTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IOTA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ETA2,RAD30 HOMOLOG B; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: CATALYTIC CORE OF DNA POLYMERASE IOTA ARGININE 71 TO COMPND 8 ALANINE MUTANT; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'- COMPND 11 D(P*AP*AP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'); COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLI, RAD30B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS DNA, POLYMERASE, LESION, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR Z.FREVERT,D.REUSCH,B.FREUDENTHAL,M.T.WASHINGTON REVDAT 2 16-JUL-25 9DRC 1 JRNL REVDAT 1 09-JUL-25 9DRC 0 JRNL AUTH Z.FREVERT,D.T.REUSCH,M.S.GILDENBERG,S.M.JORDAN,B.J.RYAN, JRNL AUTH 2 B.D.FREUDENTHAL,M.T.WASHINGTON JRNL TITL VISUALIZING DNA POLYMERASE IOTA CATALYZE HOOGSTEEN-DIRECTED JRNL TITL 2 DNA SYNTHESIS. JRNL REF NAT COMMUN V. 16 5979 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 40593703 JRNL DOI 10.1038/S41467-025-61245-8 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR D BIOL V. 68 352 2012 REMARK 1 REF 2 CRYSTALLOGR REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.0 REMARK 3 NUMBER OF REFLECTIONS : 33634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.520 REMARK 3 FREE R VALUE TEST SET COUNT : 3203 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8900 - 6.9100 1.00 1562 168 0.2126 0.2689 REMARK 3 2 6.9100 - 5.5100 1.00 1551 165 0.2692 0.2802 REMARK 3 3 5.5000 - 4.8200 1.00 1549 163 0.2245 0.2513 REMARK 3 4 4.8200 - 4.3800 1.00 1560 169 0.2055 0.2292 REMARK 3 5 4.3800 - 4.0700 1.00 1552 159 0.2103 0.2416 REMARK 3 6 4.0600 - 3.8300 1.00 1553 160 0.2259 0.2790 REMARK 3 7 3.8300 - 3.6400 1.00 1563 163 0.2277 0.3362 REMARK 3 8 3.6400 - 3.4800 1.00 1524 161 0.2484 0.2723 REMARK 3 9 3.4800 - 3.3400 1.00 1561 169 0.2543 0.2840 REMARK 3 10 3.3400 - 3.2300 1.00 1577 161 0.2487 0.3708 REMARK 3 11 3.2300 - 3.1300 1.00 1544 162 0.2740 0.3901 REMARK 3 12 3.1300 - 3.0400 0.99 1543 163 0.2781 0.3152 REMARK 3 13 3.0400 - 2.9600 0.99 1525 168 0.3014 0.3065 REMARK 3 14 2.9600 - 2.8900 0.98 1541 165 0.2889 0.3074 REMARK 3 15 2.8900 - 2.8200 0.94 1455 150 0.2957 0.3167 REMARK 3 16 2.8200 - 2.7600 0.85 1314 140 0.3019 0.3550 REMARK 3 17 2.7600 - 2.7100 0.74 1151 117 0.2929 0.3667 REMARK 3 18 2.7100 - 2.6600 0.65 1031 103 0.3119 0.3497 REMARK 3 19 2.6600 - 2.6100 0.58 909 100 0.2986 0.3120 REMARK 3 20 2.6100 - 2.5600 0.51 786 81 0.3135 0.4093 REMARK 3 21 2.5600 - 2.5200 0.49 766 79 0.3423 0.3141 REMARK 3 22 2.5200 - 2.4800 0.46 712 74 0.3229 0.3866 REMARK 3 23 2.4800 - 2.4500 0.38 602 63 0.3381 0.2962 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.328 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.789 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3302 REMARK 3 ANGLE : 0.596 4534 REMARK 3 CHIRALITY : 0.040 528 REMARK 3 PLANARITY : 0.004 516 REMARK 3 DIHEDRAL : 20.340 566 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9DRC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-24. REMARK 100 THE DEPOSITION ID IS D_1000288657. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R 200K-A REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33634 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.20.1_4487 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7 1.5 - 1.8 M AMMONIUM REMARK 280 SULFATE 5 MM EDTA, PH 7.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 135.21867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.60933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 101.41400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.80467 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 169.02333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 135.21867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 67.60933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.80467 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 101.41400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 169.02333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 48.63900 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 84.24522 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 33.80467 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 5 REMARK 465 VAL A 6 REMARK 465 GLY A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLN A 13 REMARK 465 GLY A 14 REMARK 465 VAL A 15 REMARK 465 HIS A 16 REMARK 465 ASP A 17 REMARK 465 GLN A 18 REMARK 465 VAL A 19 REMARK 465 LEU A 20 REMARK 465 PRO A 21 REMARK 465 THR A 22 REMARK 465 PRO A 23 REMARK 465 ASN A 24 REMARK 465 ALA A 25 REMARK 465 ARG A 347 REMARK 465 ARG A 348 REMARK 465 TYR A 349 REMARK 465 SER A 350 REMARK 465 SER A 351 REMARK 465 GLU A 352 REMARK 465 LYS A 353 REMARK 465 HIS A 354 REMARK 465 TYR A 355 REMARK 465 LYS A 371 REMARK 465 LEU A 372 REMARK 465 GLY A 373 REMARK 465 THR A 374 REMARK 465 GLY A 375 REMARK 465 ASN A 376 REMARK 465 TYR A 377 REMARK 465 ASP A 378 REMARK 465 VAL A 379 REMARK 465 VAL A 395 REMARK 465 ASN A 396 REMARK 465 VAL A 397 REMARK 465 LYS A 398 REMARK 465 MET A 399 REMARK 465 PRO A 400 REMARK 465 PHE A 401 REMARK 465 HIS A 402 REMARK 465 LEU A 403 REMARK 465 ALA A 415 REMARK 465 LEU A 416 REMARK 465 ASN A 417 REMARK 465 THR A 418 REMARK 465 ALA A 419 REMARK 465 LYS A 420 REMARK 465 DT B 1 REMARK 465 DC B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 43 HH21 ARG A 101 1.57 REMARK 500 OG SER A 117 O HOH A 601 2.05 REMARK 500 OE2 GLU A 43 NH2 ARG A 101 2.07 REMARK 500 O4' TTP A 501 O HOH A 602 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 H GLU A 305 OP2 DG B 6 10665 1.36 REMARK 500 OE1 GLU A 270 NZ LYS A 389 10665 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 37 66.32 31.57 REMARK 500 LYS A 51 86.98 -64.76 REMARK 500 ASP A 52 -26.87 158.59 REMARK 500 LYS A 60 -116.31 63.81 REMARK 500 ASN A 256 -48.64 -148.96 REMARK 500 ASP A 306 107.46 -179.34 REMARK 500 LYS A 310 12.90 46.10 REMARK 500 SER A 313 16.31 -145.86 REMARK 500 GLU A 314 -149.11 -141.70 REMARK 500 GLU A 316 -38.54 -38.95 REMARK 500 PRO A 363 -177.44 -57.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 34 OD1 REMARK 620 2 ASP A 126 OD2 100.9 REMARK 620 3 GLU A 127 OE2 89.6 115.4 REMARK 620 4 TTP A 501 O1A 110.1 52.2 157.7 REMARK 620 5 TTP A 501 O1G 58.0 90.4 142.7 59.6 REMARK 620 6 HOH A 602 O 150.7 52.0 111.0 46.8 106.0 REMARK 620 7 DC B 18 O3' 146.9 79.3 61.8 96.2 154.3 49.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 68 OH REMARK 620 2 TTP A 501 O2B 131.6 REMARK 620 3 TTP A 501 O3B 126.7 72.9 REMARK 620 4 TTP A 501 O3G 162.6 65.7 54.0 REMARK 620 N 1 2 3 DBREF 9DRC A 1 420 UNP Q9UNA4 POLI_HUMAN 26 445 DBREF 9DRC B 1 18 PDB 9DRC 9DRC 1 18 SEQADV 9DRC ALA A 71 UNP Q9UNA4 ARG 96 CONFLICT SEQRES 1 A 420 MET GLU LEU ALA ASP VAL GLY ALA ALA ALA SER SER GLN SEQRES 2 A 420 GLY VAL HIS ASP GLN VAL LEU PRO THR PRO ASN ALA SER SEQRES 3 A 420 SER ARG VAL ILE VAL HIS VAL ASP LEU ASP CYS PHE TYR SEQRES 4 A 420 ALA GLN VAL GLU MET ILE SER ASN PRO GLU LEU LYS ASP SEQRES 5 A 420 LYS PRO LEU GLY VAL GLN GLN LYS TYR LEU VAL VAL THR SEQRES 6 A 420 CYS ASN TYR GLU ALA ALA LYS LEU GLY VAL LYS LYS LEU SEQRES 7 A 420 MET ASN VAL ARG ASP ALA LYS GLU LYS CYS PRO GLN LEU SEQRES 8 A 420 VAL LEU VAL ASN GLY GLU ASP LEU THR ARG TYR ARG GLU SEQRES 9 A 420 MET SER TYR LYS VAL THR GLU LEU LEU GLU GLU PHE SER SEQRES 10 A 420 PRO VAL VAL GLU ARG LEU GLY PHE ASP GLU ASN PHE VAL SEQRES 11 A 420 ASP LEU THR GLU MET VAL GLU LYS ARG LEU GLN GLN LEU SEQRES 12 A 420 GLN SER ASP GLU LEU SER ALA VAL THR VAL SER GLY HIS SEQRES 13 A 420 VAL TYR ASN ASN GLN SER ILE ASN LEU LEU ASP VAL LEU SEQRES 14 A 420 HIS ILE ARG LEU LEU VAL GLY SER GLN ILE ALA ALA GLU SEQRES 15 A 420 MET ARG GLU ALA MET TYR ASN GLN LEU GLY LEU THR GLY SEQRES 16 A 420 CYS ALA GLY VAL ALA SER ASN LYS LEU LEU ALA LYS LEU SEQRES 17 A 420 VAL SER GLY VAL PHE LYS PRO ASN GLN GLN THR VAL LEU SEQRES 18 A 420 LEU PRO GLU SER CYS GLN HIS LEU ILE HIS SER LEU ASN SEQRES 19 A 420 HIS ILE LYS GLU ILE PRO GLY ILE GLY TYR LYS THR ALA SEQRES 20 A 420 LYS CYS LEU GLU ALA LEU GLY ILE ASN SER VAL ARG ASP SEQRES 21 A 420 LEU GLN THR PHE SER PRO LYS ILE LEU GLU LYS GLU LEU SEQRES 22 A 420 GLY ILE SER VAL ALA GLN ARG ILE GLN LYS LEU SER PHE SEQRES 23 A 420 GLY GLU ASP ASN SER PRO VAL ILE LEU SER GLY PRO PRO SEQRES 24 A 420 GLN SER PHE SER GLU GLU ASP SER PHE LYS LYS CYS SER SEQRES 25 A 420 SER GLU VAL GLU ALA LYS ASN LYS ILE GLU GLU LEU LEU SEQRES 26 A 420 ALA SER LEU LEU ASN ARG VAL CYS GLN ASP GLY ARG LYS SEQRES 27 A 420 PRO HIS THR VAL ARG LEU ILE ILE ARG ARG TYR SER SER SEQRES 28 A 420 GLU LYS HIS TYR GLY ARG GLU SER ARG GLN CYS PRO ILE SEQRES 29 A 420 PRO SER HIS VAL ILE GLN LYS LEU GLY THR GLY ASN TYR SEQRES 30 A 420 ASP VAL MET THR PRO MET VAL ASP ILE LEU MET LYS LEU SEQRES 31 A 420 PHE ARG ASN MET VAL ASN VAL LYS MET PRO PHE HIS LEU SEQRES 32 A 420 THR LEU LEU SER VAL CYS PHE CYS ASN LEU LYS ALA LEU SEQRES 33 A 420 ASN THR ALA LYS SEQRES 1 B 18 DT DC DA DA DG DG DG DT DC DC DT DA DG SEQRES 2 B 18 DG DA DC DC DC HET TTP A 501 42 HET CA A 502 1 HET CA A 503 1 HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION FORMUL 3 TTP C10 H17 N2 O14 P3 FORMUL 4 CA 2(CA 2+) FORMUL 6 HOH *61(H2 O) HELIX 1 AA1 CYS A 37 ASN A 47 1 11 HELIX 2 AA2 PRO A 48 LYS A 51 5 4 HELIX 3 AA3 ASN A 67 LEU A 73 1 7 HELIX 4 AA4 VAL A 81 CYS A 88 1 8 HELIX 5 AA5 LEU A 99 SER A 117 1 19 HELIX 6 AA6 LEU A 132 GLN A 142 1 11 HELIX 7 AA7 GLN A 144 VAL A 151 1 8 HELIX 8 AA8 ASN A 159 GLN A 161 5 3 HELIX 9 AA9 ASP A 167 GLY A 192 1 26 HELIX 10 AB1 ASN A 202 SER A 210 1 9 HELIX 11 AB2 LEU A 222 GLU A 224 5 3 HELIX 12 AB3 SER A 225 LEU A 233 1 9 HELIX 13 AB4 HIS A 235 ILE A 239 5 5 HELIX 14 AB5 GLY A 243 GLU A 251 1 9 HELIX 15 AB6 SER A 257 THR A 263 1 7 HELIX 16 AB7 SER A 265 GLY A 274 1 10 HELIX 17 AB8 GLY A 274 PHE A 286 1 13 HELIX 18 AB9 VAL A 315 GLY A 336 1 22 HELIX 19 AC1 PRO A 365 GLN A 370 1 6 HELIX 20 AC2 THR A 381 MET A 394 1 14 SHEET 1 AA1 6 VAL A 120 LEU A 123 0 SHEET 2 AA1 6 GLU A 127 ASP A 131 -1 O PHE A 129 N GLU A 121 SHEET 3 AA1 6 ILE A 30 LEU A 35 -1 N VAL A 33 O ASN A 128 SHEET 4 AA1 6 GLY A 195 ALA A 200 -1 O CYS A 196 N ASP A 34 SHEET 5 AA1 6 GLN A 218 VAL A 220 1 O THR A 219 N VAL A 199 SHEET 6 AA1 6 HIS A 156 VAL A 157 1 N HIS A 156 O GLN A 218 SHEET 1 AA2 4 MET A 79 ASN A 80 0 SHEET 2 AA2 4 LEU A 62 CYS A 66 -1 N VAL A 63 O MET A 79 SHEET 3 AA2 4 LEU A 55 GLN A 59 -1 N VAL A 57 O THR A 65 SHEET 4 AA2 4 VAL A 92 ASN A 95 1 O VAL A 94 N GLN A 58 SHEET 1 AA3 4 SER A 301 GLU A 304 0 SHEET 2 AA3 4 SER A 407 CYS A 411 -1 O PHE A 410 N PHE A 302 SHEET 3 AA3 4 THR A 341 ILE A 346 -1 N ILE A 345 O SER A 407 SHEET 4 AA3 4 GLU A 358 PRO A 363 -1 O ARG A 360 N LEU A 344 LINK OD1 ASP A 34 CA CA A 502 1555 1555 2.82 LINK OH TYR A 68 CA CA A 503 1555 1555 2.08 LINK OD2 ASP A 126 CA CA A 502 1555 1555 2.90 LINK OE2 GLU A 127 CA CA A 502 1555 1555 3.02 LINK O1A TTP A 501 CA CA A 502 1555 1555 2.51 LINK O1G TTP A 501 CA CA A 502 1555 1555 2.21 LINK O2B TTP A 501 CA CA A 503 1555 1555 2.22 LINK O3B TTP A 501 CA CA A 503 1555 1555 2.10 LINK O3G TTP A 501 CA CA A 503 1555 1555 3.13 LINK CA CA A 502 O HOH A 602 1555 1555 3.08 LINK CA CA A 502 O3' DC B 18 1555 1555 2.76 CRYST1 97.278 97.278 202.828 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010280 0.005935 0.000000 0.00000 SCALE2 0.000000 0.011870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004930 0.00000 TER 5756 LYS A 414 TER 6107 DC B 18 HETATM 6108 PA TTP A 501 1.637 20.084 15.772 0.53 54.09 P HETATM 6109 O1A TTP A 501 3.023 20.593 15.454 0.53 44.44 O1- HETATM 6110 O2A TTP A 501 1.707 18.973 16.788 0.53 46.43 O HETATM 6111 O3A TTP A 501 0.923 19.578 14.424 0.53 57.82 O HETATM 6112 PB TTP A 501 0.741 18.001 14.153 0.53 45.76 P HETATM 6113 O1B TTP A 501 0.183 17.306 15.370 0.53 48.07 O1- HETATM 6114 O2B TTP A 501 -0.152 17.792 12.956 0.53 46.76 O HETATM 6115 O3B TTP A 501 2.237 17.496 13.851 0.53 42.15 O HETATM 6116 PG TTP A 501 3.188 18.321 12.845 0.53 54.98 P HETATM 6117 O1G TTP A 501 3.911 19.394 13.627 0.53 43.75 O1- HETATM 6118 O2G TTP A 501 4.209 17.392 12.220 0.53 41.33 O1- HETATM 6119 O3G TTP A 501 2.343 18.967 11.773 0.53 50.45 O HETATM 6120 O5' TTP A 501 0.703 21.295 16.281 0.53 52.13 O HETATM 6121 C5' TTP A 501 0.346 21.395 17.659 0.53 50.44 C HETATM 6122 C4' TTP A 501 1.276 22.381 18.338 0.53 52.12 C HETATM 6123 O4' TTP A 501 1.607 23.471 17.447 0.53 49.30 O HETATM 6124 C3' TTP A 501 0.684 22.999 19.608 0.53 48.89 C HETATM 6125 O3' TTP A 501 1.321 22.485 20.766 0.53 48.69 O HETATM 6126 C2' TTP A 501 0.897 24.516 19.465 0.53 45.03 C HETATM 6127 C1' TTP A 501 1.530 24.767 18.093 0.53 44.64 C HETATM 6128 N1 TTP A 501 0.770 25.695 17.257 0.53 46.30 N HETATM 6129 C2 TTP A 501 0.343 26.933 17.786 0.53 46.46 C HETATM 6130 O2 TTP A 501 0.606 27.226 18.972 0.53 48.50 O HETATM 6131 N3 TTP A 501 -0.346 27.810 17.047 0.53 48.74 N HETATM 6132 C4 TTP A 501 -0.645 27.541 15.771 0.53 51.84 C HETATM 6133 O4 TTP A 501 -1.291 28.366 15.087 0.53 49.90 O HETATM 6134 C5 TTP A 501 -0.203 26.250 15.185 0.53 51.00 C HETATM 6135 C5M TTP A 501 -0.518 25.910 13.750 0.53 55.09 C HETATM 6136 C6 TTP A 501 0.513 25.368 15.988 0.53 50.84 C HETATM 6137 H5'1 TTP A 501 0.425 20.416 18.137 0.53 60.67 H HETATM 6138 H5'2 TTP A 501 -0.689 21.731 17.753 0.53 60.67 H HETATM 6139 H4' TTP A 501 2.169 21.798 18.605 0.53 62.68 H HETATM 6140 H3' TTP A 501 -0.380 22.755 19.728 0.53 58.80 H HETATM 6141 HO3' TTP A 501 0.875 22.824 21.555 0.53 58.56 H HETATM 6142 H2'1 TTP A 501 -0.057 25.042 19.545 0.53 54.16 H HETATM 6143 H2'2 TTP A 501 1.551 24.884 20.258 0.53 54.16 H HETATM 6144 H1' TTP A 501 2.510 25.240 18.245 0.53 53.71 H HETATM 6145 HN3 TTP A 501 -0.652 28.710 17.468 0.53 58.62 H HETATM 6146 HM51 TTP A 501 -0.898 26.768 13.259 0.53 66.24 H HETATM 6147 HM52 TTP A 501 0.364 25.585 13.262 0.53 66.24 H HETATM 6148 HM53 TTP A 501 -1.242 25.137 13.722 0.53 66.24 H HETATM 6149 H6 TTP A 501 0.859 24.423 15.588 0.53 61.14 H HETATM 6150 CA CA A 502 4.385 21.552 13.577 0.45 32.83 CA HETATM 6151 CA CA A 503 1.274 16.135 12.573 0.41 65.56 CA HETATM 6152 O HOH A 601 24.833 23.875 8.242 1.00 32.07 O HETATM 6153 O HOH A 602 2.825 22.820 15.908 1.00 36.80 O HETATM 6154 O HOH A 603 15.995 18.088 -12.059 1.00 31.11 O HETATM 6155 O HOH A 604 4.266 18.931 16.562 1.00 35.94 O HETATM 6156 O HOH A 605 16.517 29.829 20.520 1.00 25.16 O HETATM 6157 O HOH A 606 20.503 24.513 23.047 1.00 29.89 O HETATM 6158 O HOH A 607 0.551 16.856 -3.584 1.00 30.77 O HETATM 6159 O HOH A 608 15.286 26.771 -4.904 1.00 23.79 O HETATM 6160 O HOH A 609 13.103 30.583 16.221 1.00 26.56 O HETATM 6161 O HOH A 610 24.914 12.398 15.084 1.00 39.65 O HETATM 6162 O HOH A 611 2.684 20.442 20.404 1.00 31.65 O HETATM 6163 O HOH A 612 20.804 24.979 19.961 1.00 25.69 O HETATM 6164 O HOH A 613 -3.993 27.007 -5.451 1.00 31.45 O HETATM 6165 O HOH A 614 2.574 27.552 -12.292 1.00 32.55 O HETATM 6166 O HOH A 615 17.590 33.297 17.969 1.00 38.70 O HETATM 6167 O HOH A 616 6.822 13.678 4.388 1.00 26.20 O HETATM 6168 O HOH A 617 5.446 19.739 7.838 1.00 29.35 O HETATM 6169 O HOH A 618 15.037 29.428 1.629 1.00 28.43 O HETATM 6170 O HOH A 619 -2.187 22.190 2.002 1.00 36.17 O HETATM 6171 O HOH A 620 6.428 48.302 24.448 1.00 71.08 O HETATM 6172 O HOH A 621 10.467 30.055 3.579 1.00 34.86 O HETATM 6173 O HOH A 622 -0.920 20.227 -7.904 1.00 22.08 O HETATM 6174 O HOH A 623 14.173 33.429 8.675 1.00 31.48 O HETATM 6175 O HOH A 624 25.289 25.760 15.747 1.00 35.86 O HETATM 6176 O HOH A 625 20.594 18.910 24.555 1.00 27.28 O HETATM 6177 O HOH A 626 12.130 11.237 1.334 1.00 26.63 O HETATM 6178 O HOH A 627 13.860 5.108 21.361 1.00 23.67 O HETATM 6179 O HOH A 628 19.127 27.083 18.762 1.00 24.75 O HETATM 6180 O HOH A 629 14.800 40.408 47.307 1.00 71.77 O HETATM 6181 O HOH A 630 28.180 20.498 13.652 1.00 30.76 O HETATM 6182 O HOH A 631 21.519 8.506 12.909 1.00 34.97 O HETATM 6183 O HOH A 632 25.628 21.473 5.601 1.00 29.78 O HETATM 6184 O HOH A 633 20.465 29.129 3.589 1.00 21.77 O HETATM 6185 O HOH A 634 3.497 12.887 -3.191 1.00 16.86 O HETATM 6186 O HOH A 635 20.453 27.190 16.215 1.00 26.63 O HETATM 6187 O HOH A 636 14.311 30.047 -4.682 1.00 39.02 O HETATM 6188 O HOH A 637 12.355 24.222 17.299 1.00 23.71 O HETATM 6189 O HOH A 638 -3.384 27.530 -8.404 1.00 29.41 O HETATM 6190 O HOH A 639 13.131 4.506 2.120 1.00 40.25 O HETATM 6191 O HOH A 640 1.820 21.246 1.569 1.00 30.90 O HETATM 6192 O HOH A 641 8.280 22.527 -11.230 1.00 23.89 O HETATM 6193 O HOH A 642 19.624 20.844 26.141 1.00 31.83 O HETATM 6194 O HOH A 643 -6.662 26.953 -5.307 1.00 26.12 O HETATM 6195 O HOH A 644 19.196 21.654 -5.179 1.00 38.54 O HETATM 6196 O HOH A 645 17.336 29.150 -3.492 1.00 30.37 O HETATM 6197 O HOH A 646 13.668 13.390 2.157 1.00 25.12 O HETATM 6198 O HOH A 647 13.747 30.121 18.788 1.00 26.40 O HETATM 6199 O HOH A 648 13.723 33.721 -7.527 1.00 55.03 O HETATM 6200 O HOH A 649 4.744 17.365 8.764 1.00 40.77 O HETATM 6201 O HOH A 650 -5.039 15.506 15.108 1.00 60.88 O HETATM 6202 O HOH A 651 15.017 47.121 23.133 1.00 34.77 O HETATM 6203 O HOH A 652 23.031 52.278 37.005 1.00 50.81 O HETATM 6204 O HOH A 653 1.498 14.086 -4.049 1.00 34.14 O HETATM 6205 O HOH B 101 28.402 54.623 14.430 1.00 32.48 O HETATM 6206 O HOH B 102 27.699 64.980 2.824 1.00 47.10 O HETATM 6207 O HOH B 103 14.985 49.233 17.786 1.00 34.84 O HETATM 6208 O HOH B 104 0.872 30.995 6.059 1.00 35.14 O HETATM 6209 O HOH B 105 8.427 31.745 16.491 1.00 29.36 O HETATM 6210 O HOH B 106 26.570 69.079 10.057 1.00 44.05 O HETATM 6211 O HOH B 107 26.427 71.237 11.798 1.00 59.00 O HETATM 6212 O HOH B 108 18.981 55.151 12.130 1.00 36.96 O CONECT 136 6150 CONECT 682 6151 CONECT 1633 6150 CONECT 1646 6150 CONECT 6096 6150 CONECT 6108 6109 6110 6111 6120 CONECT 6109 6108 6150 CONECT 6110 6108 CONECT 6111 6108 6112 CONECT 6112 6111 6113 6114 6115 CONECT 6113 6112 CONECT 6114 6112 6151 CONECT 6115 6112 6116 6151 CONECT 6116 6115 6117 6118 6119 CONECT 6117 6116 6150 CONECT 6118 6116 CONECT 6119 6116 6151 CONECT 6120 6108 6121 CONECT 6121 6120 6122 6137 6138 CONECT 6122 6121 6123 6124 6139 CONECT 6123 6122 6127 CONECT 6124 6122 6125 6126 6140 CONECT 6125 6124 6141 CONECT 6126 6124 6127 6142 6143 CONECT 6127 6123 6126 6128 6144 CONECT 6128 6127 6129 6136 CONECT 6129 6128 6130 6131 CONECT 6130 6129 CONECT 6131 6129 6132 6145 CONECT 6132 6131 6133 6134 CONECT 6133 6132 CONECT 6134 6132 6135 6136 CONECT 6135 6134 6146 6147 6148 CONECT 6136 6128 6134 6149 CONECT 6137 6121 CONECT 6138 6121 CONECT 6139 6122 CONECT 6140 6124 CONECT 6141 6125 CONECT 6142 6126 CONECT 6143 6126 CONECT 6144 6127 CONECT 6145 6131 CONECT 6146 6135 CONECT 6147 6135 CONECT 6148 6135 CONECT 6149 6136 CONECT 6150 136 1633 1646 6096 CONECT 6150 6109 6117 6153 CONECT 6151 682 6114 6115 6119 CONECT 6153 6150 MASTER 415 0 3 20 14 0 0 6 3260 2 51 35 END