HEADER BIOSYNTHETIC PROTEIN 28-SEP-24 9DSQ TITLE THERMOTOGA MARITIMA THREONYLCARBAMOYL ADENYLATE SYNTHASE (TSAC2) IN TITLE 2 COMPLEX WITH PRODUCTS TC-AMP AND PYROPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THREONYLCARBAMOYL-AMP SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TC-AMP SYNTHASE,L-THREONYLCARBAMOYLADENYLATE SYNTHASE; COMPND 5 EC: 2.7.7.87; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE N-TERMINAL 5 RESIDUES (GSHMA) ARE LEFT FROM COMPND 8 THROMBIN CUTTING SITE AFTER REMOVAL OF AN N-TERMINAL HIS6 TAG. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA MSB8; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: ATCC 43589; SOURCE 5 ATCC: ATCC 43589; SOURCE 6 GENE: TM_0852; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS TSAC2, TSAC, T6A, N6-THREONYLCARBAMOYL ADENOSINE, T6A37, TRNA, KEYWDS 2 TRANSFER-RNA, REACTION INTERMEDIATE, TC-AMP, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.KUTSHUASHVILI,M.A.SWAIRJO REVDAT 1 29-OCT-25 9DSQ 0 JRNL AUTH A.KUTCHAUSHVILI,E.WOOD,A.LUTHRA,S.-H.HUNG,W.SWINEHART, JRNL AUTH 2 S.BAYOOZ,E.SCHELEEN,D.IWATA-REUYL,M.A.SWAIRJO JRNL TITL CRYSTALLOGRAPHIC EVIDENCE OF N-CARBOXY-L-THREONINE JRNL TITL 2 INTERMEDIATE IN T6A MODIFICATION OF TRNA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 76961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4176 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5605 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3650 REMARK 3 BIN FREE R VALUE SET COUNT : 302 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5123 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 117 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.98000 REMARK 3 B22 (A**2) : 0.98000 REMARK 3 B33 (A**2) : -3.17000 REMARK 3 B12 (A**2) : 0.49000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.349 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5466 ; 0.004 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5460 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7436 ; 1.261 ; 1.858 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12665 ; 0.432 ; 1.760 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 671 ; 6.616 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 36 ; 9.156 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 993 ;12.792 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 863 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6109 ; 0.000 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1081 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2636 ; 4.187 ; 4.599 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2635 ; 4.172 ; 4.598 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3303 ; 6.010 ; 8.253 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3304 ; 6.010 ; 8.254 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2830 ; 5.492 ; 5.257 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2831 ; 5.491 ; 5.258 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4128 ; 8.284 ; 9.365 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5836 ;10.299 ;44.490 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5806 ;10.294 ;44.090 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9DSQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-24. REMARK 100 THE DEPOSITION ID IS D_1000287260. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-24 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00004 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : POINTLESS 1.12.10 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81174 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 44.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.60 REMARK 200 R MERGE (I) : 0.27100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 5.12400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.8.0258 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR SOLUTION: 500 UL 80 MM REMARK 280 SODIUM CACODYLATE, PH 7.4, 0.23 M SODIUM ACETATE, 13.5% PEG8000, REMARK 280 20% GLYCEROL. PROTEIN: 25 MG/ML TMTSAC2, 50 MM TRIS, PH 7.5, 50 REMARK 280 MM KCL, 1 MM DTT, 10 MM L-THREONINE, 30 MM SODIUM BICARBONATE. REMARK 280 CRYSTAL SOAKED IN 14% PEG8000, 20% GLYCEROL, 0.2 M SODIUM REMARK 280 ACETATE, 80 MM SODIUM CACODYLATE, PH 7.4, 10 MM L-THREONINE, 10 REMARK 280 MM ATP, 10 MM MGCL2, 30 MM BICARBONATE, 0.11 U/UL INORGANIC REMARK 280 PYROPHOSPHATASE, VAPOR DIFFUSION, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.96400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.92800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.92800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.96400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 635 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 HIS A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 ASN A 222 REMARK 465 PHE A 223 REMARK 465 LYS A 224 REMARK 465 GLY A 225 REMARK 465 ARG A 226 REMARK 465 PRO A 227 REMARK 465 LEU A 228 REMARK 465 ALA A 229 REMARK 465 PRO A 230 REMARK 465 GLY A 231 REMARK 465 MET A 232 REMARK 465 LYS A 233 REMARK 465 TYR A 234 REMARK 465 ARG A 235 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 HIS B -2 REMARK 465 ASN B 222 REMARK 465 PHE B 223 REMARK 465 LYS B 224 REMARK 465 GLY B 225 REMARK 465 ARG B 226 REMARK 465 PRO B 227 REMARK 465 LEU B 228 REMARK 465 ALA B 229 REMARK 465 PRO B 230 REMARK 465 GLY B 231 REMARK 465 MET B 232 REMARK 465 LYS B 233 REMARK 465 TYR B 234 REMARK 465 ARG B 235 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 36 -78.67 -101.77 REMARK 500 LYS A 104 -70.33 -92.29 REMARK 500 SER A 105 131.46 -34.00 REMARK 500 LYS A 220 -157.34 -113.79 REMARK 500 THR B 36 -80.36 -93.33 REMARK 500 LYS B 220 -168.03 -116.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 277 0.13 SIDE CHAIN REMARK 500 ARG A 316 0.10 SIDE CHAIN REMARK 500 ARG B 316 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 144 OG REMARK 620 2 DPO A 401 O3 84.1 REMARK 620 3 DPO A 401 O6 174.6 100.2 REMARK 620 4 TXA A 402 OP1 84.8 99.5 91.2 REMARK 620 5 HOH A 520 O 81.3 89.6 101.8 162.6 REMARK 620 6 HOH A 525 O 93.9 178.0 81.8 80.1 90.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 144 OG REMARK 620 2 DPO B 401 O3 88.8 REMARK 620 3 DPO B 401 O6 172.8 98.3 REMARK 620 4 TXA B 402 OP3 90.0 92.7 88.2 REMARK 620 5 HOH B 514 O 80.7 93.5 100.3 168.7 REMARK 620 6 HOH B 526 O 100.7 167.6 72.6 95.3 80.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9D3H RELATED DB: PDB REMARK 900 RELATED ID: 9DG5 RELATED DB: PDB REMARK 900 RELATED ID: 9DSV RELATED DB: PDB REMARK 900 RELATED ID: 9DSW RELATED DB: PDB DBREF 9DSQ A 2 335 UNP Q9WZV6 Q9WZV6_THEMA 2 335 DBREF 9DSQ B 2 335 UNP Q9WZV6 Q9WZV6_THEMA 2 335 SEQADV 9DSQ GLY A -4 UNP Q9WZV6 EXPRESSION TAG SEQADV 9DSQ SER A -3 UNP Q9WZV6 EXPRESSION TAG SEQADV 9DSQ HIS A -2 UNP Q9WZV6 EXPRESSION TAG SEQADV 9DSQ MET A -1 UNP Q9WZV6 EXPRESSION TAG SEQADV 9DSQ ALA A 0 UNP Q9WZV6 EXPRESSION TAG SEQADV 9DSQ SER A 1 UNP Q9WZV6 EXPRESSION TAG SEQADV 9DSQ GLY B -4 UNP Q9WZV6 EXPRESSION TAG SEQADV 9DSQ SER B -3 UNP Q9WZV6 EXPRESSION TAG SEQADV 9DSQ HIS B -2 UNP Q9WZV6 EXPRESSION TAG SEQADV 9DSQ MET B -1 UNP Q9WZV6 EXPRESSION TAG SEQADV 9DSQ ALA B 0 UNP Q9WZV6 EXPRESSION TAG SEQADV 9DSQ SER B 1 UNP Q9WZV6 EXPRESSION TAG SEQRES 1 A 340 GLY SER HIS MET ALA SER THR ARG VAL LEU LYS VAL ASP SEQRES 2 A 340 PRO LEU PHE PRO ASP GLU LYS VAL LEU LYS GLU ALA ALA SEQRES 3 A 340 GLU LEU LEU ARG ASN GLY GLU VAL ILE ILE PHE PRO THR SEQRES 4 A 340 GLU THR VAL TYR GLY ILE GLY ALA ASP ALA TYR ASN GLU SEQRES 5 A 340 GLU ALA CYS LYS LYS ILE PHE LYS LEU LYS GLU ARG PRO SEQRES 6 A 340 ALA ASP ASN PRO LEU ILE VAL HIS ILE HIS SER PHE LYS SEQRES 7 A 340 GLN LEU GLU GLU ILE ALA GLU GLY TYR GLU PRO HIS LEU SEQRES 8 A 340 ASP PHE LEU LYS LYS PHE TRP PRO GLY PRO LEU THR VAL SEQRES 9 A 340 ILE PHE ARG LYS LYS SER GLU LYS ILE PRO PRO VAL VAL SEQRES 10 A 340 THR ALA ASP LEU PRO THR VAL ALA VAL ARG MET PRO ALA SEQRES 11 A 340 HIS PRO VAL ALA LEU LYS LEU ILE GLU LEU PHE GLY HIS SEQRES 12 A 340 PRO ILE ALA ALA PRO SER ALA ASN ILE SER GLY ARG PRO SEQRES 13 A 340 SER ALA THR ASN VAL LYS HIS VAL ILE GLU ASP PHE MET SEQRES 14 A 340 GLY LYS VAL LYS LEU ILE ILE ASP ALA GLY ASP THR PRO SEQRES 15 A 340 PHE GLY LEU GLU SER THR ILE VAL ASP LEU THR LYS GLU SEQRES 16 A 340 LYS PRO VAL LEU LEU ARG PRO GLY PRO VAL GLU VAL GLU SEQRES 17 A 340 ARG LEU LYS GLU LEU PHE PRO GLU LEU VAL VAL PRO ASP SEQRES 18 A 340 PHE VAL ARG LYS GLY ASN PHE LYS GLY ARG PRO LEU ALA SEQRES 19 A 340 PRO GLY MET LYS TYR ARG HIS TYR ALA PRO LEU LYS PRO SEQRES 20 A 340 LEU ILE LEU VAL GLU ASP LEU THR LYS MET GLU GLU VAL SEQRES 21 A 340 LEU LYS LYS TYR PRO ASP HIS VAL VAL ILE CYS VAL GLU SEQRES 22 A 340 GLU ARG LYS GLU LEU TYR ASP ASP ARG ILE VAL VAL GLY SEQRES 23 A 340 SER LEU LYS ASN PRO TYR SER ILE ALA GLN ASN ILE PHE SEQRES 24 A 340 SER ALA LEU ARG GLU ALA GLU LYS MET GLY LYS GLU TYR SEQRES 25 A 340 ILE ILE VAL GLU GLY PHE GLU GLU ARG GLY ILE LEU PHE SEQRES 26 A 340 ALA VAL MET ASN ARG LEU ARG LYS ALA ALA THR GLU ILE SEQRES 27 A 340 VAL ARG SEQRES 1 B 340 GLY SER HIS MET ALA SER THR ARG VAL LEU LYS VAL ASP SEQRES 2 B 340 PRO LEU PHE PRO ASP GLU LYS VAL LEU LYS GLU ALA ALA SEQRES 3 B 340 GLU LEU LEU ARG ASN GLY GLU VAL ILE ILE PHE PRO THR SEQRES 4 B 340 GLU THR VAL TYR GLY ILE GLY ALA ASP ALA TYR ASN GLU SEQRES 5 B 340 GLU ALA CYS LYS LYS ILE PHE LYS LEU LYS GLU ARG PRO SEQRES 6 B 340 ALA ASP ASN PRO LEU ILE VAL HIS ILE HIS SER PHE LYS SEQRES 7 B 340 GLN LEU GLU GLU ILE ALA GLU GLY TYR GLU PRO HIS LEU SEQRES 8 B 340 ASP PHE LEU LYS LYS PHE TRP PRO GLY PRO LEU THR VAL SEQRES 9 B 340 ILE PHE ARG LYS LYS SER GLU LYS ILE PRO PRO VAL VAL SEQRES 10 B 340 THR ALA ASP LEU PRO THR VAL ALA VAL ARG MET PRO ALA SEQRES 11 B 340 HIS PRO VAL ALA LEU LYS LEU ILE GLU LEU PHE GLY HIS SEQRES 12 B 340 PRO ILE ALA ALA PRO SER ALA ASN ILE SER GLY ARG PRO SEQRES 13 B 340 SER ALA THR ASN VAL LYS HIS VAL ILE GLU ASP PHE MET SEQRES 14 B 340 GLY LYS VAL LYS LEU ILE ILE ASP ALA GLY ASP THR PRO SEQRES 15 B 340 PHE GLY LEU GLU SER THR ILE VAL ASP LEU THR LYS GLU SEQRES 16 B 340 LYS PRO VAL LEU LEU ARG PRO GLY PRO VAL GLU VAL GLU SEQRES 17 B 340 ARG LEU LYS GLU LEU PHE PRO GLU LEU VAL VAL PRO ASP SEQRES 18 B 340 PHE VAL ARG LYS GLY ASN PHE LYS GLY ARG PRO LEU ALA SEQRES 19 B 340 PRO GLY MET LYS TYR ARG HIS TYR ALA PRO LEU LYS PRO SEQRES 20 B 340 LEU ILE LEU VAL GLU ASP LEU THR LYS MET GLU GLU VAL SEQRES 21 B 340 LEU LYS LYS TYR PRO ASP HIS VAL VAL ILE CYS VAL GLU SEQRES 22 B 340 GLU ARG LYS GLU LEU TYR ASP ASP ARG ILE VAL VAL GLY SEQRES 23 B 340 SER LEU LYS ASN PRO TYR SER ILE ALA GLN ASN ILE PHE SEQRES 24 B 340 SER ALA LEU ARG GLU ALA GLU LYS MET GLY LYS GLU TYR SEQRES 25 B 340 ILE ILE VAL GLU GLY PHE GLU GLU ARG GLY ILE LEU PHE SEQRES 26 B 340 ALA VAL MET ASN ARG LEU ARG LYS ALA ALA THR GLU ILE SEQRES 27 B 340 VAL ARG HET DPO A 401 9 HET TXA A 402 33 HET MG A 403 1 HET ACT A 404 4 HET ACT A 405 4 HET DPO B 401 9 HET TXA B 402 33 HET MG B 403 1 HET ACT B 404 4 HET GOL B 405 6 HET GOL B 406 6 HET PEG B 407 7 HETNAM DPO DIPHOSPHATE HETNAM TXA THREONYLCARBAMOYLADENYLATE HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 DPO 2(O7 P2 4-) FORMUL 4 TXA 2(C15 H21 N6 O11 P) FORMUL 5 MG 2(MG 2+) FORMUL 6 ACT 3(C2 H3 O2 1-) FORMUL 12 GOL 2(C3 H8 O3) FORMUL 14 PEG C4 H10 O3 FORMUL 15 HOH *208(H2 O) HELIX 1 AA1 ASP A 13 ASN A 26 1 14 HELIX 2 AA2 ASN A 46 GLU A 58 1 13 HELIX 3 AA3 SER A 71 ILE A 78 1 8 HELIX 4 AA4 TYR A 82 PRO A 84 5 3 HELIX 5 AA5 HIS A 85 TRP A 93 1 9 HELIX 6 AA6 PRO A 109 ALA A 114 1 6 HELIX 7 AA7 HIS A 126 GLY A 137 1 12 HELIX 8 AA8 ASN A 155 MET A 164 1 10 HELIX 9 AA9 GLU A 201 PHE A 209 1 9 HELIX 10 AB1 PRO A 215 LYS A 220 1 6 HELIX 11 AB2 ASP A 248 THR A 250 5 3 HELIX 12 AB3 LYS A 251 TYR A 259 1 9 HELIX 13 AB4 GLU A 269 LYS A 271 5 3 HELIX 14 AB5 ASN A 285 GLU A 301 1 17 HELIX 15 AB6 ARG A 316 ALA A 330 1 15 HELIX 16 AB7 ASP B 13 ASN B 26 1 14 HELIX 17 AB8 ASN B 46 GLU B 58 1 13 HELIX 18 AB9 SER B 71 ILE B 78 1 8 HELIX 19 AC1 TYR B 82 PRO B 84 5 3 HELIX 20 AC2 HIS B 85 TRP B 93 1 9 HELIX 21 AC3 PRO B 109 ALA B 114 1 6 HELIX 22 AC4 HIS B 126 GLY B 137 1 12 HELIX 23 AC5 ASN B 155 MET B 164 1 10 HELIX 24 AC6 GLU B 201 PHE B 209 1 9 HELIX 25 AC7 PRO B 215 LYS B 220 1 6 HELIX 26 AC8 ASP B 248 THR B 250 5 3 HELIX 27 AC9 LYS B 251 TYR B 259 1 9 HELIX 28 AD1 GLU B 269 TYR B 274 5 6 HELIX 29 AD2 ASN B 285 GLU B 301 1 17 HELIX 30 AD3 GLY B 317 ALA B 330 1 14 SHEET 1 AA1 9 ARG A 3 LYS A 6 0 SHEET 2 AA1 9 LEU A 169 ASP A 172 1 O ASP A 172 N LEU A 5 SHEET 3 AA1 9 ILE A 30 PHE A 32 1 N ILE A 31 O ILE A 171 SHEET 4 AA1 9 GLY A 39 ASP A 43 -1 O GLY A 41 N ILE A 30 SHEET 5 AA1 9 ILE A 140 ALA A 141 -1 O ALA A 141 N ALA A 42 SHEET 6 AA1 9 ILE A 66 HIS A 68 -1 N HIS A 68 O ILE A 140 SHEET 7 AA1 9 THR A 118 ARG A 122 1 O ALA A 120 N VAL A 67 SHEET 8 AA1 9 LEU A 97 LYS A 103 -1 N PHE A 101 O VAL A 119 SHEET 9 AA1 9 ALA A 79 GLU A 80 -1 N GLU A 80 O ARG A 102 SHEET 1 AA210 ARG A 3 LYS A 6 0 SHEET 2 AA210 LEU A 169 ASP A 172 1 O ASP A 172 N LEU A 5 SHEET 3 AA210 ILE A 30 PHE A 32 1 N ILE A 31 O ILE A 171 SHEET 4 AA210 GLY A 39 ASP A 43 -1 O GLY A 41 N ILE A 30 SHEET 5 AA210 ILE A 140 ALA A 141 -1 O ALA A 141 N ALA A 42 SHEET 6 AA210 ILE A 66 HIS A 68 -1 N HIS A 68 O ILE A 140 SHEET 7 AA210 THR A 118 ARG A 122 1 O ALA A 120 N VAL A 67 SHEET 8 AA210 LEU A 97 LYS A 103 -1 N PHE A 101 O VAL A 119 SHEET 9 AA210 THR A 183 ASP A 186 1 O THR A 183 N THR A 98 SHEET 10 AA210 VAL A 193 ARG A 196 -1 O VAL A 193 N ASP A 186 SHEET 1 AA3 5 ARG A 277 GLY A 281 0 SHEET 2 AA3 5 HIS A 262 VAL A 267 1 N VAL A 264 O ILE A 278 SHEET 3 AA3 5 TYR A 307 GLU A 311 1 O ILE A 309 N ILE A 265 SHEET 4 AA3 5 LEU A 243 VAL A 246 1 N ILE A 244 O VAL A 310 SHEET 5 AA3 5 GLU A 332 VAL A 334 1 O GLU A 332 N LEU A 245 SHEET 1 AA4 9 ARG B 3 LYS B 6 0 SHEET 2 AA4 9 LEU B 169 ASP B 172 1 O ASP B 172 N LEU B 5 SHEET 3 AA4 9 ILE B 30 PHE B 32 1 N ILE B 31 O ILE B 171 SHEET 4 AA4 9 GLY B 39 ASP B 43 -1 O GLY B 39 N PHE B 32 SHEET 5 AA4 9 ILE B 140 ALA B 142 -1 O ALA B 141 N ALA B 42 SHEET 6 AA4 9 ILE B 66 HIS B 68 -1 N HIS B 68 O ILE B 140 SHEET 7 AA4 9 THR B 118 ARG B 122 1 O ALA B 120 N VAL B 67 SHEET 8 AA4 9 LEU B 97 LYS B 103 -1 N PHE B 101 O VAL B 119 SHEET 9 AA4 9 ALA B 79 GLU B 80 -1 N GLU B 80 O ARG B 102 SHEET 1 AA510 ARG B 3 LYS B 6 0 SHEET 2 AA510 LEU B 169 ASP B 172 1 O ASP B 172 N LEU B 5 SHEET 3 AA510 ILE B 30 PHE B 32 1 N ILE B 31 O ILE B 171 SHEET 4 AA510 GLY B 39 ASP B 43 -1 O GLY B 39 N PHE B 32 SHEET 5 AA510 ILE B 140 ALA B 142 -1 O ALA B 141 N ALA B 42 SHEET 6 AA510 ILE B 66 HIS B 68 -1 N HIS B 68 O ILE B 140 SHEET 7 AA510 THR B 118 ARG B 122 1 O ALA B 120 N VAL B 67 SHEET 8 AA510 LEU B 97 LYS B 103 -1 N PHE B 101 O VAL B 119 SHEET 9 AA510 THR B 183 ASP B 186 1 O THR B 183 N THR B 98 SHEET 10 AA510 VAL B 193 ARG B 196 -1 O VAL B 193 N ASP B 186 SHEET 1 AA6 5 ARG B 277 GLY B 281 0 SHEET 2 AA6 5 HIS B 262 VAL B 267 1 N VAL B 264 O ILE B 278 SHEET 3 AA6 5 TYR B 307 GLU B 311 1 O ILE B 309 N ILE B 265 SHEET 4 AA6 5 LEU B 243 VAL B 246 1 N ILE B 244 O ILE B 308 SHEET 5 AA6 5 GLU B 332 VAL B 334 1 O VAL B 334 N LEU B 245 LINK OG SER A 144 MG MG A 403 1555 1555 2.33 LINK O3 DPO A 401 MG MG A 403 1555 1555 2.02 LINK O6 DPO A 401 MG MG A 403 1555 1555 2.08 LINK OP1 TXA A 402 MG MG A 403 1555 1555 2.29 LINK MG MG A 403 O HOH A 520 1555 1555 2.23 LINK MG MG A 403 O HOH A 525 1555 1555 2.04 LINK OG SER B 144 MG MG B 403 1555 1555 2.25 LINK O3 DPO B 401 MG MG B 403 1555 1555 2.12 LINK O6 DPO B 401 MG MG B 403 1555 1555 2.21 LINK OP3 TXA B 402 MG MG B 403 1555 1555 2.40 LINK MG MG B 403 O HOH B 514 1555 1555 2.40 LINK MG MG B 403 O HOH B 526 1555 1555 2.22 CISPEP 1 TRP A 93 PRO A 94 0 -8.18 CISPEP 2 TRP B 93 PRO B 94 0 -7.63 CRYST1 153.825 153.825 86.892 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006501 0.003753 0.000000 0.00000 SCALE2 0.000000 0.007507 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011509 0.00000 CONECT 1167 5266 CONECT 3782 5317 CONECT 5224 5225 5226 5227 5228 CONECT 5225 5224 CONECT 5226 5224 CONECT 5227 5224 5266 CONECT 5228 5224 5229 CONECT 5229 5228 5230 5231 5232 CONECT 5230 5229 CONECT 5231 5229 5266 CONECT 5232 5229 CONECT 5233 5234 CONECT 5234 5233 5235 5236 CONECT 5235 5234 CONECT 5236 5234 5237 5240 CONECT 5237 5236 5238 5239 CONECT 5238 5237 CONECT 5239 5237 CONECT 5240 5236 5241 CONECT 5241 5240 5242 5243 CONECT 5242 5241 5244 CONECT 5243 5241 CONECT 5244 5242 5245 5246 5247 CONECT 5245 5244 CONECT 5246 5244 5266 CONECT 5247 5244 5248 CONECT 5248 5247 5249 CONECT 5249 5248 5250 5255 CONECT 5250 5249 5251 5252 CONECT 5251 5250 CONECT 5252 5250 5253 5254 CONECT 5253 5252 CONECT 5254 5252 5255 5256 CONECT 5255 5249 5254 CONECT 5256 5254 5257 5265 CONECT 5257 5256 5258 CONECT 5258 5257 5259 CONECT 5259 5258 5260 5265 CONECT 5260 5259 5261 5262 CONECT 5261 5260 CONECT 5262 5260 5263 CONECT 5263 5262 5264 CONECT 5264 5263 5265 CONECT 5265 5256 5259 5264 CONECT 5266 1167 5227 5231 5246 CONECT 5266 5360 5365 CONECT 5267 5268 5269 5270 CONECT 5268 5267 CONECT 5269 5267 CONECT 5270 5267 CONECT 5271 5272 5273 5274 CONECT 5272 5271 CONECT 5273 5271 CONECT 5274 5271 CONECT 5275 5276 5277 5278 5279 CONECT 5276 5275 CONECT 5277 5275 CONECT 5278 5275 5317 CONECT 5279 5275 5280 CONECT 5280 5279 5281 5282 5283 CONECT 5281 5280 CONECT 5282 5280 5317 CONECT 5283 5280 CONECT 5284 5285 CONECT 5285 5284 5286 5287 CONECT 5286 5285 CONECT 5287 5285 5288 5291 CONECT 5288 5287 5289 5290 CONECT 5289 5288 CONECT 5290 5288 CONECT 5291 5287 5292 CONECT 5292 5291 5293 5294 CONECT 5293 5292 5295 CONECT 5294 5292 CONECT 5295 5293 5296 5297 5298 CONECT 5296 5295 5317 CONECT 5297 5295 CONECT 5298 5295 5299 CONECT 5299 5298 5300 CONECT 5300 5299 5301 5306 CONECT 5301 5300 5302 5303 CONECT 5302 5301 CONECT 5303 5301 5304 5305 CONECT 5304 5303 CONECT 5305 5303 5306 5307 CONECT 5306 5300 5305 CONECT 5307 5305 5308 5316 CONECT 5308 5307 5309 CONECT 5309 5308 5310 CONECT 5310 5309 5311 5316 CONECT 5311 5310 5312 5313 CONECT 5312 5311 CONECT 5313 5311 5314 CONECT 5314 5313 5315 CONECT 5315 5314 5316 CONECT 5316 5307 5310 5315 CONECT 5317 3782 5278 5282 5296 CONECT 5317 5426 5438 CONECT 5318 5319 5320 5321 CONECT 5319 5318 CONECT 5320 5318 CONECT 5321 5318 CONECT 5322 5323 5324 CONECT 5323 5322 CONECT 5324 5322 5325 5326 CONECT 5325 5324 CONECT 5326 5324 5327 CONECT 5327 5326 CONECT 5328 5329 5330 CONECT 5329 5328 CONECT 5330 5328 5331 5332 CONECT 5331 5330 CONECT 5332 5330 5333 CONECT 5333 5332 CONECT 5334 5335 5336 CONECT 5335 5334 CONECT 5336 5334 5337 CONECT 5337 5336 5338 CONECT 5338 5337 5339 CONECT 5339 5338 5340 CONECT 5340 5339 CONECT 5360 5266 CONECT 5365 5266 CONECT 5426 5317 CONECT 5438 5317 MASTER 383 0 12 30 48 0 0 6 5448 2 125 54 END