HEADER HYDROLASE 02-OCT-24 9DU9 TITLE CRYSTAL STRUCTURE OF ADP-RIBOSE DIPHOSPHATASE FROM KLEBSIELLA TITLE 2 PNEUMONIAE (GDP/MG BOUND) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSE PYROPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADP-RIBOSE DIPHOSPHATASE,ADP-RIBOSE PHOSPHOHYDROLASE, COMPND 5 ADENOSINE DIPHOSPHORIBOSE PYROPHOSPHATASE; COMPND 6 EC: 3.6.1.13; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: KPHS_45750; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: KLPNC.20447.A.B1 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, ADP-RIBOSE DIPHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 1 16-OCT-24 9DU9 0 JRNL AUTH M.R.MIAN,L.LIU,S.LOVELL,G.W.BUCHKO,K.P.BATTAILE JRNL TITL CRYSTAL STRUCTURE OF ADP-RIBOSE DIPHOSPHATASE FROM JRNL TITL 2 KLEBSIELLA PNEUMONIAE (GDP/MG BOUND) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_5449: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 89271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 4416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6900 - 4.1900 0.99 3162 133 0.1545 0.1721 REMARK 3 2 4.1900 - 3.3300 0.99 3018 173 0.1501 0.1791 REMARK 3 3 3.3300 - 2.9100 0.99 2984 162 0.1725 0.1726 REMARK 3 4 2.9100 - 2.6400 0.99 2942 145 0.1765 0.2094 REMARK 3 5 2.6400 - 2.4500 0.99 2960 147 0.1645 0.2042 REMARK 3 6 2.4500 - 2.3100 0.99 2938 155 0.1580 0.1816 REMARK 3 7 2.3100 - 2.1900 0.99 2930 138 0.1485 0.1708 REMARK 3 8 2.1900 - 2.1000 0.99 2887 159 0.1390 0.1575 REMARK 3 9 2.1000 - 2.0200 0.98 2884 173 0.1373 0.1901 REMARK 3 10 2.0200 - 1.9500 0.98 2884 144 0.1536 0.1828 REMARK 3 11 1.9500 - 1.8900 0.98 2891 133 0.1501 0.1777 REMARK 3 12 1.8900 - 1.8300 0.98 2871 145 0.1426 0.1840 REMARK 3 13 1.8300 - 1.7800 0.98 2836 160 0.1429 0.2028 REMARK 3 14 1.7800 - 1.7400 0.97 2815 166 0.1444 0.1862 REMARK 3 15 1.7400 - 1.7000 0.97 2860 142 0.1407 0.1961 REMARK 3 16 1.7000 - 1.6600 0.97 2847 144 0.1390 0.1681 REMARK 3 17 1.6600 - 1.6300 0.97 2831 160 0.1515 0.1958 REMARK 3 18 1.6300 - 1.6000 0.97 2810 138 0.1470 0.2123 REMARK 3 19 1.6000 - 1.5700 0.96 2865 137 0.1588 0.1839 REMARK 3 20 1.5700 - 1.5500 0.97 2819 142 0.1475 0.1957 REMARK 3 21 1.5500 - 1.5200 0.96 2804 152 0.1459 0.2020 REMARK 3 22 1.5200 - 1.5000 0.96 2827 142 0.1439 0.1769 REMARK 3 23 1.5000 - 1.4800 0.96 2777 129 0.1496 0.2007 REMARK 3 24 1.4800 - 1.4500 0.96 2819 141 0.1594 0.2129 REMARK 3 25 1.4500 - 1.4300 0.96 2772 136 0.1658 0.2027 REMARK 3 26 1.4300 - 1.4200 0.95 2749 165 0.1809 0.2166 REMARK 3 27 1.4200 - 1.4000 0.94 2679 153 0.1866 0.2257 REMARK 3 28 1.4000 - 1.3800 0.91 2677 149 0.2014 0.2465 REMARK 3 29 1.3800 - 1.3700 0.87 2503 142 0.2221 0.2439 REMARK 3 30 1.3700 - 1.3500 0.76 2214 111 0.2319 0.2880 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3518 REMARK 3 ANGLE : 0.870 4805 REMARK 3 CHIRALITY : 0.079 524 REMARK 3 PLANARITY : 0.007 614 REMARK 3 DIHEDRAL : 15.772 1304 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9DU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1000288849. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89405 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 48.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 11.80 REMARK 200 R MERGE FOR SHELL (I) : 0.83400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (V/V) PEG 3350, 0.2M SODIUM REMARK 280 ACETATE, 0.1 M TRIS 8.5, KLPNC.20447.A.B1.PB00133 AT 26 MG/ML. REMARK 280 PLATE LIU-S-107 AB/12. 5 HOUR SOAK IN 5MM GDP AND 5MM MGCL2, REMARK 280 PUCK: PSL-0209, CRYO: 30% (V/V) PEG 3350, 0.2 M SODIUM ACETATE, REMARK 280 0.1 M TRIS 8.5., PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.71850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.89800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.77600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.89800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.71850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.77600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 MET A 9 REMARK 465 SER A 10 REMARK 465 LYS A 11 REMARK 465 PRO A 12 REMARK 465 THR A 13 REMARK 465 GLN A 14 REMARK 465 GLN A 15 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 MET B 9 REMARK 465 SER B 10 REMARK 465 LYS B 11 REMARK 465 PRO B 12 REMARK 465 THR B 13 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 GLN B 14 CG CD OE1 NE2 REMARK 470 GLU B 169 CG CD OE1 OE2 REMARK 470 GLU B 170 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 135 -77.40 -96.34 REMARK 500 ILE A 135 -75.78 -96.34 REMARK 500 SER A 141 76.54 -167.14 REMARK 500 HIS A 165 -156.98 -136.36 REMARK 500 GLU A 169 1.29 -68.68 REMARK 500 ASP A 194 33.15 -148.47 REMARK 500 ILE B 135 -76.72 -97.05 REMARK 500 SER B 141 76.25 -166.85 REMARK 500 HIS B 165 -152.71 -136.76 REMARK 500 GLU B 169 1.32 -68.55 REMARK 500 ASP B 194 26.46 -147.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 566 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B 567 DISTANCE = 7.24 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 104 O REMARK 620 2 GLU A 124 OE2 91.0 REMARK 620 3 GDP A 301 O3B 79.8 90.8 REMARK 620 4 GDP A 301 O3B 104.6 154.2 72.3 REMARK 620 5 HOH A 402 O 166.5 81.2 89.2 79.3 REMARK 620 6 HOH A 406 O 99.1 91.0 177.9 106.3 92.1 REMARK 620 7 HOH A 449 O 77.1 76.6 14.5 86.7 90.3 166.9 REMARK 620 8 HOH A 519 O 89.2 169.2 78.6 18.3 96.5 99.6 92.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 120 OE1 REMARK 620 2 GLU A 124 OE2 86.3 REMARK 620 3 GLU A 172 OE2 163.9 85.1 REMARK 620 4 GDP A 301 O3B 100.3 85.8 92.6 REMARK 620 5 HOH A 407 O 85.8 106.7 83.7 166.6 REMARK 620 6 HOH A 449 O 95.7 79.1 95.9 7.8 174.1 REMARK 620 7 HOH A 536 O 99.4 166.3 92.1 81.0 86.3 87.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 104 O REMARK 620 2 GLU B 124 OE2 85.1 REMARK 620 3 GDP B 301 O3B 104.4 157.2 REMARK 620 4 GDP B 301 O3B 79.2 91.2 70.9 REMARK 620 5 HOH B 402 O 163.9 83.8 82.2 89.4 REMARK 620 6 HOH B 411 O 75.4 72.1 90.0 19.3 90.1 REMARK 620 7 HOH B 415 O 100.1 91.6 106.6 177.1 91.8 163.3 REMARK 620 8 HOH B 433 O 89.9 171.7 20.3 81.3 99.7 100.2 95.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 120 OE1 REMARK 620 2 GLU B 124 OE2 86.6 REMARK 620 3 GLU B 172 OE2 163.5 84.3 REMARK 620 4 GDP B 301 O3B 102.4 85.9 90.6 REMARK 620 5 HOH B 411 O 97.5 79.6 94.3 7.7 REMARK 620 6 HOH B 446 O 85.1 110.1 85.2 162.9 170.2 REMARK 620 7 HOH B 514 O 110.9 157.6 81.6 77.0 84.2 86.0 REMARK 620 N 1 2 3 4 5 6 DBREF1 9DU9 A 9 218 UNP A0A0H3GVQ7_KLEPH DBREF2 9DU9 A A0A0H3GVQ7 1 210 DBREF1 9DU9 B 9 218 UNP A0A0H3GVQ7_KLEPH DBREF2 9DU9 B A0A0H3GVQ7 1 210 SEQADV 9DU9 MET A 1 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9DU9 ALA A 2 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9DU9 HIS A 3 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9DU9 HIS A 4 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9DU9 HIS A 5 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9DU9 HIS A 6 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9DU9 HIS A 7 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9DU9 HIS A 8 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9DU9 MET B 1 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9DU9 ALA B 2 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9DU9 HIS B 3 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9DU9 HIS B 4 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9DU9 HIS B 5 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9DU9 HIS B 6 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9DU9 HIS B 7 UNP A0A0H3GVQ EXPRESSION TAG SEQADV 9DU9 HIS B 8 UNP A0A0H3GVQ EXPRESSION TAG SEQRES 1 A 218 MET ALA HIS HIS HIS HIS HIS HIS MET SER LYS PRO THR SEQRES 2 A 218 GLN GLN GLY ILE THR PHE SER LYS ASN ASP VAL GLU ILE SEQRES 3 A 218 ILE ALA ARG GLU THR LEU TYR ARG GLY PHE PHE SER LEU SEQRES 4 A 218 ASP LEU TYR ARG PHE ARG HIS ARG LEU PHE ASN GLY GLY SEQRES 5 A 218 MET SER GLY GLU ILE THR ARG GLU ILE PHE GLU ARG GLY SEQRES 6 A 218 HIS ALA ALA VAL LEU LEU PRO PHE ASP PRO VAL ARG ASP SEQRES 7 A 218 GLU VAL VAL LEU VAL GLU GLN ILE ARG ILE ALA ALA TYR SEQRES 8 A 218 ASP THR SER GLU SER PRO TRP LEU LEU GLU MET VAL ALA SEQRES 9 A 218 GLY MET ILE GLU ALA GLY GLU THR VAL GLU ASP VAL ALA SEQRES 10 A 218 ARG ARG GLU ALA LEU GLU GLU ALA GLY LEU GLU VAL GLY SEQRES 11 A 218 ARG THR LYS PRO ILE LEU SER TYR LEU ALA SER PRO GLY SEQRES 12 A 218 GLY THR SER GLU ARG LEU SER ILE LEU VAL GLY GLU VAL SEQRES 13 A 218 ASP ALA SER THR ALA LYS GLY ILE HIS GLY LEU ALA GLU SEQRES 14 A 218 GLU ASN GLU ASP ILE ARG VAL HIS VAL VAL SER ARG GLU SEQRES 15 A 218 GLN ALA TYR GLN TRP VAL GLU GLU GLY LYS ILE ASP ASN SEQRES 16 A 218 ALA ALA SER VAL ILE ALA LEU GLN TRP LEU GLN LEU HIS SEQRES 17 A 218 TYR HIS ASN LEU ARG ASN GLU TRP THR LYS SEQRES 1 B 218 MET ALA HIS HIS HIS HIS HIS HIS MET SER LYS PRO THR SEQRES 2 B 218 GLN GLN GLY ILE THR PHE SER LYS ASN ASP VAL GLU ILE SEQRES 3 B 218 ILE ALA ARG GLU THR LEU TYR ARG GLY PHE PHE SER LEU SEQRES 4 B 218 ASP LEU TYR ARG PHE ARG HIS ARG LEU PHE ASN GLY GLY SEQRES 5 B 218 MET SER GLY GLU ILE THR ARG GLU ILE PHE GLU ARG GLY SEQRES 6 B 218 HIS ALA ALA VAL LEU LEU PRO PHE ASP PRO VAL ARG ASP SEQRES 7 B 218 GLU VAL VAL LEU VAL GLU GLN ILE ARG ILE ALA ALA TYR SEQRES 8 B 218 ASP THR SER GLU SER PRO TRP LEU LEU GLU MET VAL ALA SEQRES 9 B 218 GLY MET ILE GLU ALA GLY GLU THR VAL GLU ASP VAL ALA SEQRES 10 B 218 ARG ARG GLU ALA LEU GLU GLU ALA GLY LEU GLU VAL GLY SEQRES 11 B 218 ARG THR LYS PRO ILE LEU SER TYR LEU ALA SER PRO GLY SEQRES 12 B 218 GLY THR SER GLU ARG LEU SER ILE LEU VAL GLY GLU VAL SEQRES 13 B 218 ASP ALA SER THR ALA LYS GLY ILE HIS GLY LEU ALA GLU SEQRES 14 B 218 GLU ASN GLU ASP ILE ARG VAL HIS VAL VAL SER ARG GLU SEQRES 15 B 218 GLN ALA TYR GLN TRP VAL GLU GLU GLY LYS ILE ASP ASN SEQRES 16 B 218 ALA ALA SER VAL ILE ALA LEU GLN TRP LEU GLN LEU HIS SEQRES 17 B 218 TYR HIS ASN LEU ARG ASN GLU TRP THR LYS HET GDP A 301 56 HET MG A 302 1 HET MG A 303 1 HET GDP B 301 56 HET MG B 302 1 HET MG B 303 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 MG 4(MG 2+) FORMUL 9 HOH *344(H2 O) HELIX 1 AA1 SER A 20 ASN A 22 5 3 HELIX 2 AA2 ILE A 88 SER A 94 5 7 HELIX 3 AA3 THR A 112 GLY A 126 1 15 HELIX 4 AA4 ASP A 157 ALA A 161 5 5 HELIX 5 AA5 LEU A 167 ASN A 171 5 5 HELIX 6 AA6 ARG A 181 GLU A 190 1 10 HELIX 7 AA7 ASN A 195 LYS A 218 1 24 HELIX 8 AA8 SER B 20 ASN B 22 5 3 HELIX 9 AA9 ILE B 88 SER B 94 5 7 HELIX 10 AB1 THR B 112 GLY B 126 1 15 HELIX 11 AB2 ASP B 157 ALA B 161 5 5 HELIX 12 AB3 LEU B 167 ASN B 171 5 5 HELIX 13 AB4 ARG B 181 GLU B 190 1 10 HELIX 14 AB5 ASN B 195 LYS B 218 1 24 SHEET 1 AA1 3 VAL A 24 ARG A 34 0 SHEET 2 AA1 3 SER A 38 HIS A 46 -1 O LEU A 41 N GLU A 30 SHEET 3 AA1 3 ILE A 57 GLU A 63 -1 O ILE A 57 N PHE A 44 SHEET 1 AA2 5 TRP A 98 GLU A 101 0 SHEET 2 AA2 5 GLU A 79 ILE A 86 -1 N VAL A 83 O GLU A 101 SHEET 3 AA2 5 ALA A 67 ASP A 74 -1 N ASP A 74 O GLU A 79 SHEET 4 AA2 5 ARG A 148 GLU A 155 1 O LEU A 152 N LEU A 71 SHEET 5 AA2 5 THR A 132 LEU A 139 -1 N LYS A 133 O VAL A 153 SHEET 1 AA3 5 VAL A 103 MET A 106 0 SHEET 2 AA3 5 ALA A 67 ASP A 74 -1 N LEU A 70 O VAL A 103 SHEET 3 AA3 5 GLU A 79 ILE A 86 -1 O GLU A 79 N ASP A 74 SHEET 4 AA3 5 ILE A 174 SER A 180 -1 O HIS A 177 N LEU A 82 SHEET 5 AA3 5 ILE A 164 HIS A 165 -1 N HIS A 165 O ILE A 174 SHEET 1 AA4 3 VAL B 24 ARG B 34 0 SHEET 2 AA4 3 SER B 38 HIS B 46 -1 O LEU B 41 N GLU B 30 SHEET 3 AA4 3 ILE B 57 GLU B 63 -1 O ILE B 61 N ASP B 40 SHEET 1 AA5 5 TRP B 98 GLU B 101 0 SHEET 2 AA5 5 GLU B 79 ILE B 86 -1 N VAL B 83 O GLU B 101 SHEET 3 AA5 5 ALA B 67 ASP B 74 -1 N ASP B 74 O GLU B 79 SHEET 4 AA5 5 ARG B 148 GLU B 155 1 O GLY B 154 N LEU B 71 SHEET 5 AA5 5 THR B 132 LEU B 139 -1 N LEU B 136 O ILE B 151 SHEET 1 AA6 5 VAL B 103 MET B 106 0 SHEET 2 AA6 5 ALA B 67 ASP B 74 -1 N LEU B 70 O VAL B 103 SHEET 3 AA6 5 GLU B 79 ILE B 86 -1 O GLU B 79 N ASP B 74 SHEET 4 AA6 5 ILE B 174 SER B 180 -1 O HIS B 177 N LEU B 82 SHEET 5 AA6 5 ILE B 164 HIS B 165 -1 N HIS B 165 O ILE B 174 LINK O ALA A 104 MG MG A 302 1555 1555 2.23 LINK OE1 GLU A 120 MG MG A 303 1555 1555 2.06 LINK OE2 GLU A 124 MG MG A 302 1555 1555 2.15 LINK OE2 GLU A 124 MG MG A 303 1555 1555 2.19 LINK OE2 GLU A 172 MG MG A 303 1555 1555 2.24 LINK O3BAGDP A 301 MG MG A 302 1555 1555 2.53 LINK O3BBGDP A 301 MG MG A 302 1555 1555 2.09 LINK O3BAGDP A 301 MG MG A 303 1555 1555 2.69 LINK MG MG A 302 O HOH A 402 1555 1555 2.22 LINK MG MG A 302 O HOH A 406 1555 1555 2.18 LINK MG MG A 302 O BHOH A 449 1555 1555 2.27 LINK MG MG A 302 O AHOH A 519 1555 1555 2.09 LINK MG MG A 303 O HOH A 407 1555 1555 2.04 LINK MG MG A 303 O BHOH A 449 1555 1555 2.12 LINK MG MG A 303 O HOH A 536 1555 1555 2.10 LINK O ALA B 104 MG MG B 303 1555 1555 2.31 LINK OE1 GLU B 120 MG MG B 302 1555 1555 2.14 LINK OE2 GLU B 124 MG MG B 302 1555 1555 2.14 LINK OE2 GLU B 124 MG MG B 303 1555 1555 2.22 LINK OE2 GLU B 172 MG MG B 302 1555 1555 2.30 LINK O3BBGDP B 301 MG MG B 302 1555 1555 2.78 LINK O3BAGDP B 301 MG MG B 303 1555 1555 1.94 LINK O3BBGDP B 301 MG MG B 303 1555 1555 2.51 LINK MG MG B 302 O AHOH B 411 1555 1555 2.01 LINK MG MG B 302 O HOH B 446 1555 1555 2.04 LINK MG MG B 302 O HOH B 514 1555 1555 2.17 LINK MG MG B 303 O HOH B 402 1555 1555 2.22 LINK MG MG B 303 O AHOH B 411 1555 1555 2.30 LINK MG MG B 303 O HOH B 415 1555 1555 2.15 LINK MG MG B 303 O BHOH B 433 1555 1555 2.12 CRYST1 57.437 79.552 91.796 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017410 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012570 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010894 0.00000