HEADER CELL INVASION 10-OCT-24 9DX6 TITLE CRYSTAL STRUCTURE OF PLASMODIUM VIVAX (PALO ALTO) PVAMA1 IN COMPLEX TITLE 2 WITH HUMAN FAB 826827 COMPND MOL_ID: 1; COMPND 2 MOLECULE: APICAL MEROZOITE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 826827 FAB HEAVY CHAIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 826827 FAB LIGHT CHAIN; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. VIVAX; SOURCE 4 ORGANISM_TAXID: 5855; SOURCE 5 GENE: AMA1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS INHIBITORY ANTIBODY, COMPLEX, PLASMODIUM VIVAX, CELL INVASION EXPDTA X-RAY DIFFRACTION AUTHOR M.H.DIETRICH,W.H.THAM,N.C.JUNG REVDAT 1 13-NOV-24 9DX6 0 JRNL AUTH C.L.KING,A.C.WINNICKI,M.H.DIETRICH,L.M.YEOH,L.L.CARIAS, JRNL AUTH 2 W.ROOBSOONG,C.L.DRAGO,A.N.MALACHIN,K.R.REDINGER, JRNL AUTH 3 L.B.FEUFACK-DONFACK,L.BALDOR,N.C.JUNG,O.S.MCLAINE, JRNL AUTH 4 Y.SKOMOROVSKA-PROKVOLIT,A.ORBAN,D.H.OPI,J.SATTABONGKOT, JRNL AUTH 5 W.-H.THAM,J.POPOVICI,J.G.BEESON,J.BOSCH,P.KIRTLEY,K.NIELSON, JRNL AUTH 6 M.ALESHNICK,G.ZANGHI,N.REZAKHANI,A.M.VAUGHAN,B.K.WILDER JRNL TITL POTENT AMA1-SPECIFIC HUMAN MONOCLONAL ANTIBODY AGAINST JRNL TITL 2 PLASMODIUM VIVAX PRE-ERYTHROCYTIC AND BLOOD STAGES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7600 - 5.9200 1.00 2731 143 0.1950 0.2334 REMARK 3 2 5.9200 - 4.7000 1.00 2644 139 0.1827 0.2216 REMARK 3 3 4.7000 - 4.1000 1.00 2641 139 0.1597 0.1935 REMARK 3 4 4.1000 - 3.7300 1.00 2612 138 0.1645 0.1979 REMARK 3 5 3.7300 - 3.4600 1.00 2600 137 0.1753 0.2147 REMARK 3 6 3.4600 - 3.2600 1.00 2601 137 0.1789 0.2220 REMARK 3 7 3.2600 - 3.0900 1.00 2607 137 0.1876 0.2359 REMARK 3 8 3.0900 - 2.9600 1.00 2594 136 0.1946 0.2587 REMARK 3 9 2.9600 - 2.8500 1.00 2597 137 0.2067 0.2408 REMARK 3 10 2.8500 - 2.7500 1.00 2592 136 0.2251 0.2857 REMARK 3 11 2.7500 - 2.6600 1.00 2609 137 0.2270 0.3210 REMARK 3 12 2.6600 - 2.5900 1.00 2564 135 0.2355 0.2871 REMARK 3 13 2.5900 - 2.5200 1.00 2598 136 0.2525 0.3043 REMARK 3 14 2.5200 - 2.4600 1.00 2589 137 0.2768 0.3117 REMARK 3 15 2.4600 - 2.4000 1.00 2579 136 0.2973 0.3550 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6543 REMARK 3 ANGLE : 0.668 8894 REMARK 3 CHIRALITY : 0.045 983 REMARK 3 PLANARITY : 0.006 1162 REMARK 3 DIHEDRAL : 5.854 901 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9DX6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1000289023. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953724563122 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41378 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 47.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.16600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.08600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG SMEAR BROAD, 0.1 M TRIS PH REMARK 280 8.5, 0.3 M GLYCYL-GLYCYL-GLYCINE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 93.61850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.23050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 93.61850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.23050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 GLY A 22 REMARK 465 ARG A 23 REMARK 465 ASN A 24 REMARK 465 GLN A 25 REMARK 465 LYS A 26 REMARK 465 PRO A 27 REMARK 465 SER A 28 REMARK 465 ARG A 29 REMARK 465 LEU A 30 REMARK 465 THR A 31 REMARK 465 ARG A 32 REMARK 465 SER A 33 REMARK 465 ALA A 34 REMARK 465 ASN A 35 REMARK 465 ASN A 36 REMARK 465 VAL A 37 REMARK 465 LEU A 38 REMARK 465 LEU A 39 REMARK 465 GLU A 40 REMARK 465 LYS A 41 REMARK 465 GLY A 42 REMARK 465 PRO A 43 REMARK 465 THR A 44 REMARK 465 VAL A 45 REMARK 465 ASP A 211 REMARK 465 ALA A 212 REMARK 465 GLN A 213 REMARK 465 ASN A 214 REMARK 465 ARG A 215 REMARK 465 THR A 296 REMARK 465 GLN A 297 REMARK 465 TYR A 298 REMARK 465 GLU A 299 REMARK 465 GLU A 300 REMARK 465 GLU A 301 REMARK 465 MET A 302 REMARK 465 THR A 303 REMARK 465 GLY A 328 REMARK 465 ALA A 329 REMARK 465 PHE A 330 REMARK 465 ASN A 331 REMARK 465 SER A 332 REMARK 465 ASP A 333 REMARK 465 ASN A 334 REMARK 465 GLN A 402 REMARK 465 SER A 403 REMARK 465 ARG A 404 REMARK 465 ASN A 405 REMARK 465 MET A 406 REMARK 465 ASN A 407 REMARK 465 LEU A 408 REMARK 465 TYR A 409 REMARK 465 SER A 410 REMARK 465 VAL A 411 REMARK 465 ASP A 412 REMARK 465 GLY A 413 REMARK 465 GLU A 414 REMARK 465 ARG A 415 REMARK 465 GLU A 475 REMARK 465 ASN A 476 REMARK 465 GLY A 477 REMARK 465 GLU A 478 REMARK 465 GLU A 479 REMARK 465 LYS A 480 REMARK 465 SER A 481 REMARK 465 ASN A 482 REMARK 465 LYS A 483 REMARK 465 GLN A 484 REMARK 465 GLY A 485 REMARK 465 SER A 486 REMARK 465 LYS B 232 REMARK 465 SER B 233 REMARK 465 CYS B 234 REMARK 465 GLU C 215 REMARK 465 CYS C 216 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 46 CG CD OE1 OE2 REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 LYS A 86 CE NZ REMARK 470 LYS A 112 CD CE NZ REMARK 470 LYS A 148 CE NZ REMARK 470 ARG A 206 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 245 CE NZ REMARK 470 TYR A 270 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 306 CG CD OE1 NE2 REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 VAL A 327 CG1 CG2 REMARK 470 LYS A 338 CE NZ REMARK 470 LYS A 392 CD CE NZ REMARK 470 GLU A 396 CD OE1 OE2 REMARK 470 ARG A 397 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 399 CG1 CG2 CD1 REMARK 470 LYS A 400 CE NZ REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 ILE A 416 CG1 CG2 CD1 REMARK 470 GLU A 428 CG CD OE1 OE2 REMARK 470 LYS A 431 CE NZ REMARK 470 GLU A 435 CD OE1 OE2 REMARK 470 GLU A 437 CD OE1 OE2 REMARK 470 GLU A 457 CG CD OE1 OE2 REMARK 470 LYS A 459 CG CD CE NZ REMARK 470 ASN A 461 CG OD1 ND2 REMARK 470 GLU A 468 CG CD OE1 OE2 REMARK 470 ARG A 471 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 472 CG OD1 OD2 REMARK 470 TYR A 473 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR A 474 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN B 1 CG CD OE1 NE2 REMARK 470 ARG B 83 NE CZ NH1 NH2 REMARK 470 GLN B 123 CG CD OE1 NE2 REMARK 470 LYS B 147 CG CD CE NZ REMARK 470 LYS B 224 CE NZ REMARK 470 ASP C 124 CG OD1 OD2 REMARK 470 LYS C 128 CD CE NZ REMARK 470 LYS C 147 CG CD CE NZ REMARK 470 GLN C 149 CG CD OE1 NE2 REMARK 470 LYS C 151 CG CD CE NZ REMARK 470 LEU C 156 CG CD1 CD2 REMARK 470 SER C 170 OG REMARK 470 LYS C 171 CG CD CE NZ REMARK 470 LYS C 185 CG CD CE NZ REMARK 470 LYS C 190 CG CD CE NZ REMARK 470 LYS C 192 CG CD CE NZ REMARK 470 LYS C 209 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 338 O HOH B 352 2.12 REMARK 500 O HOH B 342 O HOH B 354 2.13 REMARK 500 OE2 GLU A 141 O HOH A 501 2.14 REMARK 500 O HOH B 350 O HOH B 353 2.18 REMARK 500 NH2 ARG A 47 O ILE A 430 2.19 REMARK 500 O HIS C 191 NE ARG C 213 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 72 -63.03 -104.09 REMARK 500 LEU A 76 49.80 -142.48 REMARK 500 ASP A 118 37.63 -90.15 REMARK 500 ASN A 130 47.50 -87.19 REMARK 500 ILE A 135 -75.89 -106.52 REMARK 500 LYS A 225 65.82 -106.66 REMARK 500 ASP A 242 33.70 -99.57 REMARK 500 ARG A 249 -68.56 -146.16 REMARK 500 CYS A 434 -151.26 -130.47 REMARK 500 CYS A 451 63.86 -102.76 REMARK 500 LYS A 459 -164.80 -79.97 REMARK 500 SER B 15 -10.78 77.16 REMARK 500 GLN B 45 -167.60 -125.37 REMARK 500 TYR B 116 80.01 -153.99 REMARK 500 ASP B 162 65.92 64.44 REMARK 500 SER C 30 -113.94 52.78 REMARK 500 ALA C 51 -37.86 70.94 REMARK 500 TYR C 91 50.73 -148.04 REMARK 500 ASN C 154 8.07 55.02 REMARK 500 REMARK 500 REMARK: NULL DBREF 9DX6 A 22 484 UNP B9TXF7 B9TXF7_PLAVI 22 484 DBREF 9DX6 B 1 234 PDB 9DX6 9DX6 1 234 DBREF 9DX6 C 1 216 PDB 9DX6 9DX6 1 216 SEQADV 9DX6 HIS A 16 UNP B9TXF7 EXPRESSION TAG SEQADV 9DX6 HIS A 17 UNP B9TXF7 EXPRESSION TAG SEQADV 9DX6 HIS A 18 UNP B9TXF7 EXPRESSION TAG SEQADV 9DX6 HIS A 19 UNP B9TXF7 EXPRESSION TAG SEQADV 9DX6 HIS A 20 UNP B9TXF7 EXPRESSION TAG SEQADV 9DX6 HIS A 21 UNP B9TXF7 EXPRESSION TAG SEQADV 9DX6 ASN A 178 UNP B9TXF7 SER 178 ENGINEERED MUTATION SEQADV 9DX6 ASP A 226 UNP B9TXF7 ASN 226 ENGINEERED MUTATION SEQADV 9DX6 GLN A 441 UNP B9TXF7 ASN 441 ENGINEERED MUTATION SEQADV 9DX6 GLY A 485 UNP B9TXF7 EXPRESSION TAG SEQADV 9DX6 SER A 486 UNP B9TXF7 EXPRESSION TAG SEQRES 1 A 471 HIS HIS HIS HIS HIS HIS GLY ARG ASN GLN LYS PRO SER SEQRES 2 A 471 ARG LEU THR ARG SER ALA ASN ASN VAL LEU LEU GLU LYS SEQRES 3 A 471 GLY PRO THR VAL GLU ARG SER THR ARG MET SER ASN PRO SEQRES 4 A 471 TRP LYS ALA PHE MET GLU LYS TYR ASP ILE GLU ARG THR SEQRES 5 A 471 HIS SER SER GLY VAL ARG VAL ASP LEU GLY GLU ASP ALA SEQRES 6 A 471 GLU VAL GLU ASN ALA LYS TYR ARG ILE PRO ALA GLY ARG SEQRES 7 A 471 CYS PRO VAL PHE GLY LYS GLY ILE VAL ILE GLU ASN SER SEQRES 8 A 471 ALA VAL SER PHE LEU LYS PRO VAL ALA THR GLY ASP GLN SEQRES 9 A 471 ARG LEU LYS ASP GLY GLY PHE ALA PHE PRO ASN ALA ASN SEQRES 10 A 471 ASP HIS ILE SER PRO MET THR LEU GLU ASN LEU LYS ALA SEQRES 11 A 471 ARG TYR LYS ASP ASN VAL GLU MET MET LYS LEU ASN ASP SEQRES 12 A 471 ILE ALA LEU CYS ARG THR HIS ALA ALA SER PHE VAL MET SEQRES 13 A 471 ALA GLY ASP GLN ASN SER ASN TYR ARG HIS PRO ALA VAL SEQRES 14 A 471 TYR ASP GLU LYS GLU LYS THR CYS HIS MET LEU TYR LEU SEQRES 15 A 471 SER ALA GLN GLU ASN MET GLY PRO ARG TYR CYS SER PRO SEQRES 16 A 471 ASP ALA GLN ASN ARG ASP ALA VAL PHE CYS PHE LYS PRO SEQRES 17 A 471 ASP LYS ASP GLU SER PHE GLU ASN LEU VAL TYR LEU SER SEQRES 18 A 471 LYS ASN VAL ARG ASN ASP TRP ASP LYS LYS CYS PRO ARG SEQRES 19 A 471 LYS ASN LEU GLY ASN ALA LYS PHE GLY LEU TRP VAL ASP SEQRES 20 A 471 GLY ASN CYS GLU GLU ILE PRO TYR VAL LYS GLU VAL GLU SEQRES 21 A 471 ALA LYS ASP LEU ARG GLU CYS ASN ARG ILE VAL PHE GLU SEQRES 22 A 471 ALA SER ALA SER ASP GLN PRO THR GLN TYR GLU GLU GLU SEQRES 23 A 471 MET THR ASP TYR GLN LYS ILE GLN GLN GLY PHE ARG GLN SEQRES 24 A 471 ASN ASN ARG GLU MET ILE LYS SER ALA PHE LEU PRO VAL SEQRES 25 A 471 GLY ALA PHE ASN SER ASP ASN PHE LYS SER LYS GLY ARG SEQRES 26 A 471 GLY PHE ASN TRP ALA ASN PHE ASP SER VAL LYS LYS LYS SEQRES 27 A 471 CYS TYR ILE PHE ASN THR LYS PRO THR CYS LEU ILE ASN SEQRES 28 A 471 ASP LYS ASN PHE ILE ALA THR THR ALA LEU SER HIS PRO SEQRES 29 A 471 ARG GLU VAL ASP LEU GLU PHE PRO CYS SER ILE TYR LYS SEQRES 30 A 471 ASP GLU ILE GLU ARG GLU ILE LYS LYS GLN SER ARG ASN SEQRES 31 A 471 MET ASN LEU TYR SER VAL ASP GLY GLU ARG ILE VAL LEU SEQRES 32 A 471 PRO ARG ILE PHE ILE SER ASN ASP LYS GLU SER ILE LYS SEQRES 33 A 471 CYS PRO CYS GLU PRO GLU HIS ILE SER GLN SER THR CYS SEQRES 34 A 471 ASN PHE TYR VAL CYS ASN CYS VAL GLU LYS ARG ALA GLU SEQRES 35 A 471 ILE LYS GLU ASN ASN GLN VAL VAL ILE LYS GLU GLU PHE SEQRES 36 A 471 ARG ASP TYR TYR GLU ASN GLY GLU GLU LYS SER ASN LYS SEQRES 37 A 471 GLN GLY SER SEQRES 1 B 234 GLN LEU GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 B 234 PRO SER GLU THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 B 234 GLY SER VAL SER SER PRO GLY TYR TYR TRP SER TRP ILE SEQRES 4 B 234 ARG GLN PRO PRO GLY GLN GLY LEU GLU TRP ILE GLY ASP SEQRES 5 B 234 ILE TYR TYR ARG GLY SER SER ASN GLN ASN PRO SER LEU SEQRES 6 B 234 LYS SER ARG VAL THR THR SER VAL ASP THR ALA THR ASN SEQRES 7 B 234 GLN PHE SER LEU ARG LEU SER SER VAL THR ALA ALA ASP SEQRES 8 B 234 THR ALA VAL TYR PHE CYS ALA ARG SER ARG GLY GLU GLY SEQRES 9 B 234 TYR CYS SER PHE GLY THR CYS TYR THR LEU PHE TYR TYR SEQRES 10 B 234 PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 11 B 234 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 12 B 234 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 13 B 234 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 14 B 234 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 15 B 234 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 16 B 234 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 17 B 234 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 18 B 234 ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 1 C 216 GLU ILE VAL MET THR GLN SER PRO ALA THR LEU SER LEU SEQRES 2 C 216 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 C 216 GLN SER ILE SER LYS THR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 C 216 PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR SER ALA SER SEQRES 5 C 216 THR ARG ALA SER GLY VAL PRO ALA ARG PHE SER GLY SER SEQRES 6 C 216 GLY SER GLY THR GLU PHE SER LEU THR ILE SER SER LEU SEQRES 7 C 216 GLN SER GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN TYR SEQRES 8 C 216 ASN GLU TRP PRO PRO ARG PRO THR PHE GLY GLY GLY THR SEQRES 9 C 216 LYS VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 C 216 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 C 216 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 C 216 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 C 216 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 C 216 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 C 216 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 C 216 CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR SEQRES 17 C 216 LYS SER PHE ASN ARG GLY GLU CYS FORMUL 4 HOH *259(H2 O) HELIX 1 AA1 ALA A 57 TYR A 62 5 6 HELIX 2 AA2 ASP A 63 HIS A 68 1 6 HELIX 3 AA3 ARG A 120 GLY A 124 5 5 HELIX 4 AA4 LEU A 140 TYR A 147 1 8 HELIX 5 AA5 GLU A 152 LEU A 156 5 5 HELIX 6 AA6 ASN A 157 PHE A 169 1 13 HELIX 7 AA7 PRO A 205 SER A 209 5 5 HELIX 8 AA8 ASP A 226 GLU A 230 5 5 HELIX 9 AA9 ASP A 242 CYS A 247 1 6 HELIX 10 AB1 ASP A 278 ALA A 289 1 12 HELIX 11 AB2 TYR A 305 GLN A 314 1 10 HELIX 12 AB3 ASN A 316 SER A 322 1 7 HELIX 13 AB4 SER A 389 LYS A 400 1 12 HELIX 14 AB5 GLU A 460 ASN A 462 5 3 HELIX 15 AB6 LYS A 467 ASP A 472 1 6 HELIX 16 AB7 LEU B 65 SER B 67 5 3 HELIX 17 AB8 THR B 88 THR B 92 5 5 HELIX 18 AB9 SER B 145 LYS B 147 5 3 HELIX 19 AC1 SER B 174 ALA B 176 5 3 HELIX 20 AC2 SER B 205 GLN B 210 5 6 HELIX 21 AC3 LYS B 219 ASN B 222 5 4 HELIX 22 AC4 GLN C 79 PHE C 83 5 5 HELIX 23 AC5 SER C 123 SER C 129 1 7 HELIX 24 AC6 LYS C 185 HIS C 191 1 7 SHEET 1 AA1 2 GLU A 78 VAL A 82 0 SHEET 2 AA1 2 ALA A 85 ILE A 89 -1 O TYR A 87 N ALA A 80 SHEET 1 AA2 5 VAL A 96 PHE A 97 0 SHEET 2 AA2 5 LEU A 232 LEU A 235 -1 O TYR A 234 N VAL A 96 SHEET 3 AA2 5 ALA A 183 ASP A 186 -1 N ALA A 183 O LEU A 235 SHEET 4 AA2 5 THR A 191 MET A 194 -1 O THR A 191 N ASP A 186 SHEET 5 AA2 5 MET A 138 THR A 139 -1 N MET A 138 O CYS A 192 SHEET 1 AA3 2 GLY A 100 ILE A 103 0 SHEET 2 AA3 2 PHE A 221 ASP A 224 -1 O LYS A 222 N VAL A 102 SHEET 1 AA4 4 VAL A 170 MET A 171 0 SHEET 2 AA4 4 ALA B 93 SER B 107 -1 O CYS B 106 N VAL A 170 SHEET 3 AA4 4 TYR B 34 GLN B 41 -1 N TYR B 35 O SER B 100 SHEET 4 AA4 4 GLU B 48 ILE B 53 -1 O ILE B 50 N TRP B 38 SHEET 1 AA5 4 GLY B 10 VAL B 12 0 SHEET 2 AA5 4 THR B 125 VAL B 129 1 O THR B 128 N GLY B 10 SHEET 3 AA5 4 ALA B 93 SER B 107 -1 N ALA B 93 O VAL B 127 SHEET 4 AA5 4 THR B 110 TRP B 121 -1 O LEU B 114 N GLU B 103 SHEET 1 AA6 6 CYS A 265 GLU A 266 0 SHEET 2 AA6 6 ASN A 251 TRP A 260 -1 N LEU A 259 O GLU A 266 SHEET 3 AA6 6 CYS A 363 THR A 374 -1 O ILE A 365 N LYS A 256 SHEET 4 AA6 6 TRP A 344 ASP A 348 -1 N PHE A 347 O ILE A 371 SHEET 5 AA6 6 LYS A 353 PHE A 357 -1 O TYR A 355 N ASN A 346 SHEET 6 AA6 6 LYS A 272 GLU A 275 -1 N VAL A 274 O CYS A 354 SHEET 1 AA7 3 CYS A 265 GLU A 266 0 SHEET 2 AA7 3 ASN A 251 TRP A 260 -1 N LEU A 259 O GLU A 266 SHEET 3 AA7 3 VAL A 382 ASP A 383 1 O ASP A 383 N ASN A 251 SHEET 1 AA8 3 ILE A 423 SER A 424 0 SHEET 2 AA8 3 TYR A 447 VAL A 448 -1 O TYR A 447 N SER A 424 SHEET 3 AA8 3 GLU A 437 HIS A 438 -1 N GLU A 437 O VAL A 448 SHEET 1 AA9 2 ALA A 456 ILE A 458 0 SHEET 2 AA9 2 VAL A 464 ILE A 466 -1 O VAL A 465 N GLU A 457 SHEET 1 AB1 4 GLN B 3 GLU B 6 0 SHEET 2 AB1 4 LEU B 18 SER B 25 -1 O SER B 25 N GLN B 3 SHEET 3 AB1 4 GLN B 79 LEU B 84 -1 O LEU B 84 N LEU B 18 SHEET 4 AB1 4 VAL B 69 ASP B 74 -1 N ASP B 74 O GLN B 79 SHEET 1 AB2 4 SER B 138 LEU B 142 0 SHEET 2 AB2 4 THR B 153 TYR B 163 -1 O LEU B 159 N PHE B 140 SHEET 3 AB2 4 TYR B 194 PRO B 203 -1 O VAL B 202 N ALA B 154 SHEET 4 AB2 4 VAL B 181 THR B 183 -1 N HIS B 182 O VAL B 199 SHEET 1 AB3 4 THR B 149 SER B 150 0 SHEET 2 AB3 4 THR B 153 TYR B 163 -1 O THR B 153 N SER B 150 SHEET 3 AB3 4 TYR B 194 PRO B 203 -1 O VAL B 202 N ALA B 154 SHEET 4 AB3 4 VAL B 187 LEU B 188 -1 N VAL B 187 O SER B 195 SHEET 1 AB4 3 THR B 169 TRP B 172 0 SHEET 2 AB4 3 ILE B 213 HIS B 218 -1 O ASN B 217 N THR B 169 SHEET 3 AB4 3 THR B 223 ARG B 228 -1 O VAL B 225 N VAL B 216 SHEET 1 AB5 4 MET C 4 SER C 7 0 SHEET 2 AB5 4 ALA C 19 ALA C 25 -1 O ARG C 24 N THR C 5 SHEET 3 AB5 4 GLU C 70 ILE C 75 -1 O LEU C 73 N LEU C 21 SHEET 4 AB5 4 PHE C 62 SER C 67 -1 N SER C 63 O THR C 74 SHEET 1 AB6 6 THR C 10 LEU C 13 0 SHEET 2 AB6 6 THR C 104 ILE C 108 1 O GLU C 107 N LEU C 11 SHEET 3 AB6 6 ALA C 84 GLN C 90 -1 N ALA C 84 O VAL C 106 SHEET 4 AB6 6 LEU C 33 GLN C 38 -1 N GLN C 38 O VAL C 85 SHEET 5 AB6 6 ARG C 45 TYR C 49 -1 O LEU C 47 N TRP C 35 SHEET 6 AB6 6 THR C 53 ARG C 54 -1 O THR C 53 N TYR C 49 SHEET 1 AB7 4 THR C 10 LEU C 13 0 SHEET 2 AB7 4 THR C 104 ILE C 108 1 O GLU C 107 N LEU C 11 SHEET 3 AB7 4 ALA C 84 GLN C 90 -1 N ALA C 84 O VAL C 106 SHEET 4 AB7 4 THR C 99 PHE C 100 -1 O THR C 99 N GLN C 90 SHEET 1 AB8 4 SER C 116 PHE C 120 0 SHEET 2 AB8 4 THR C 131 PHE C 141 -1 O VAL C 135 N PHE C 120 SHEET 3 AB8 4 TYR C 175 SER C 184 -1 O LEU C 177 N LEU C 138 SHEET 4 AB8 4 SER C 161 VAL C 165 -1 N GLN C 162 O THR C 180 SHEET 1 AB9 4 ALA C 155 LEU C 156 0 SHEET 2 AB9 4 LYS C 147 VAL C 152 -1 N VAL C 152 O ALA C 155 SHEET 3 AB9 4 VAL C 193 THR C 199 -1 O GLU C 197 N GLN C 149 SHEET 4 AB9 4 VAL C 207 ASN C 212 -1 O VAL C 207 N VAL C 198 SSBOND 1 CYS A 94 CYS A 247 1555 1555 2.04 SSBOND 2 CYS A 162 CYS A 192 1555 1555 2.04 SSBOND 3 CYS A 208 CYS A 220 1555 1555 2.04 SSBOND 4 CYS A 265 CYS A 363 1555 1555 2.04 SSBOND 5 CYS A 282 CYS A 354 1555 1555 2.04 SSBOND 6 CYS A 388 CYS A 444 1555 1555 2.03 SSBOND 7 CYS A 432 CYS A 449 1555 1555 2.03 SSBOND 8 CYS A 434 CYS A 451 1555 1555 2.03 SSBOND 9 CYS B 22 CYS B 97 1555 1555 2.05 SSBOND 10 CYS B 106 CYS B 111 1555 1555 2.04 SSBOND 11 CYS B 158 CYS B 214 1555 1555 2.04 SSBOND 12 CYS C 23 CYS C 88 1555 1555 2.06 SSBOND 13 CYS C 136 CYS C 196 1555 1555 2.04 CISPEP 1 SER A 136 PRO A 137 0 -11.45 CISPEP 2 PHE B 164 PRO B 165 0 -6.26 CISPEP 3 GLU B 166 PRO B 167 0 0.91 CISPEP 4 SER C 7 PRO C 8 0 -9.67 CISPEP 5 TRP C 94 PRO C 95 0 0.53 CISPEP 6 TYR C 142 PRO C 143 0 5.86 CRYST1 187.237 54.461 104.130 90.00 97.20 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005341 0.000000 0.000675 0.00000 SCALE2 0.000000 0.018362 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009680 0.00000