HEADER OXIDOREDUCTASE 11-OCT-24 9DXU TITLE CRYSTAL STRUCTURE OF COBALT-INCORPORATED HUMAN 2-AMINOETHANETHIOL (AKA TITLE 2 CYSTEAMINE) DIOXYGENASE (ADO) VARIANT C18S/C239S IN COMPLEX WITH CP6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-AMINOETHANETHIOL DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYSTEAMINE DIOXYGENASE; COMPND 5 EC: 1.13.11.19; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CP6; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADO, C10ORF22; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS OXYGEN-SENSOR, THIOL DIOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.JIRAMONGKOL,K.PATEL,M.D.WHITE REVDAT 1 04-JUN-25 9DXU 0 JRNL AUTH Y.JIRAMONGKOL,K.PATEL,J.JOHANSEN-LEETE,J.W.C.MAXWELL, JRNL AUTH 2 Y.CHANG,J.J.DU,T.PASSIOURA,K.M.COOK,R.J.PAYNE,M.D.WHITE JRNL TITL AN MRNA-DISPLAY DERIVED CYCLIC PEPTIDE SCAFFOLD REVEALS THE JRNL TITL 2 SUBSTRATE BINDING INTERACTIONS OF AN N-TERMINAL CYSTEINE JRNL TITL 3 OXIDASE. JRNL REF NAT COMMUN V. 16 4761 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 40404614 JRNL DOI 10.1038/S41467-025-59960-3 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3400 - 3.8800 1.00 2767 127 0.1497 0.1666 REMARK 3 2 3.8800 - 3.0800 1.00 2572 150 0.1506 0.2028 REMARK 3 3 3.0800 - 2.6900 1.00 2577 138 0.1789 0.2162 REMARK 3 4 2.6900 - 2.4400 1.00 2553 130 0.1904 0.2451 REMARK 3 5 2.4400 - 2.2700 1.00 2547 120 0.1806 0.2101 REMARK 3 6 2.2700 - 2.1400 1.00 2515 145 0.1974 0.2147 REMARK 3 7 2.1400 - 2.0300 1.00 2538 125 0.1834 0.2494 REMARK 3 8 2.0300 - 1.9400 1.00 2482 171 0.1924 0.2584 REMARK 3 9 1.9400 - 1.8700 1.00 2527 124 0.2160 0.2621 REMARK 3 10 1.8700 - 1.8000 1.00 2478 125 0.2409 0.2903 REMARK 3 11 1.8000 - 1.7400 0.99 2481 123 0.2895 0.3286 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.925 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2200 REMARK 3 ANGLE : 1.013 2998 REMARK 3 CHIRALITY : 0.064 314 REMARK 3 PLANARITY : 0.009 393 REMARK 3 DIHEDRAL : 9.799 320 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2391 -26.2057 28.5712 REMARK 3 T TENSOR REMARK 3 T11: 0.1508 T22: 0.2053 REMARK 3 T33: 0.1971 T12: -0.0393 REMARK 3 T13: 0.0425 T23: 0.0469 REMARK 3 L TENSOR REMARK 3 L11: 6.7715 L22: 4.5791 REMARK 3 L33: 5.8929 L12: 0.4298 REMARK 3 L13: 0.6522 L23: -0.9146 REMARK 3 S TENSOR REMARK 3 S11: 0.1256 S12: -0.3480 S13: -0.4000 REMARK 3 S21: -0.0217 S22: -0.0627 S23: 0.3037 REMARK 3 S31: 0.4664 S32: -0.5561 S33: -0.0385 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6085 -15.7703 20.8127 REMARK 3 T TENSOR REMARK 3 T11: 0.1138 T22: 0.0774 REMARK 3 T33: 0.1171 T12: 0.0033 REMARK 3 T13: 0.0064 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 2.2058 L22: 1.4759 REMARK 3 L33: 2.3744 L12: 0.2650 REMARK 3 L13: -0.2392 L23: -0.0973 REMARK 3 S TENSOR REMARK 3 S11: 0.0045 S12: 0.0564 S13: 0.1044 REMARK 3 S21: -0.0057 S22: 0.0377 S23: 0.0418 REMARK 3 S31: -0.0283 S32: -0.0754 S33: -0.0364 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1148 -14.6585 -10.9857 REMARK 3 T TENSOR REMARK 3 T11: 0.3279 T22: 0.3465 REMARK 3 T33: 0.1422 T12: -0.0707 REMARK 3 T13: -0.0073 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 5.8908 L22: 4.1347 REMARK 3 L33: 8.0936 L12: -4.0915 REMARK 3 L13: -3.8930 L23: 0.0326 REMARK 3 S TENSOR REMARK 3 S11: 0.0635 S12: -0.2854 S13: 0.1570 REMARK 3 S21: -0.1522 S22: 0.0161 S23: 0.1014 REMARK 3 S31: -0.0472 S32: -0.8319 S33: -0.0293 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7269 -17.8553 10.7631 REMARK 3 T TENSOR REMARK 3 T11: 0.1317 T22: 0.1769 REMARK 3 T33: 0.1807 T12: 0.0054 REMARK 3 T13: -0.0200 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.9240 L22: 0.5192 REMARK 3 L33: 3.7587 L12: 0.3582 REMARK 3 L13: -0.5640 L23: -0.6342 REMARK 3 S TENSOR REMARK 3 S11: -0.0334 S12: 0.1887 S13: 0.0638 REMARK 3 S21: -0.0931 S22: 0.0128 S23: 0.0809 REMARK 3 S31: 0.0303 S32: -0.5139 S33: 0.0143 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 217 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4538 -18.6926 11.0952 REMARK 3 T TENSOR REMARK 3 T11: 0.1497 T22: 0.1880 REMARK 3 T33: 0.1426 T12: -0.0040 REMARK 3 T13: -0.0090 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 1.5547 L22: 1.0317 REMARK 3 L33: 4.1818 L12: 0.0651 REMARK 3 L13: 0.2816 L23: 0.1528 REMARK 3 S TENSOR REMARK 3 S11: -0.0156 S12: 0.3429 S13: 0.1106 REMARK 3 S21: -0.2218 S22: 0.0080 S23: 0.0562 REMARK 3 S31: -0.0472 S32: -0.1621 S33: -0.0154 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7547 -26.0059 15.2458 REMARK 3 T TENSOR REMARK 3 T11: 0.2070 T22: 0.1743 REMARK 3 T33: 0.2482 T12: -0.0004 REMARK 3 T13: -0.0205 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 6.1064 L22: 3.6377 REMARK 3 L33: 9.8273 L12: 2.6827 REMARK 3 L13: -6.7360 L23: -3.0171 REMARK 3 S TENSOR REMARK 3 S11: -0.1024 S12: -0.1579 S13: -0.2466 REMARK 3 S21: 0.3008 S22: -0.1223 S23: -0.4137 REMARK 3 S31: 0.2519 S32: 0.2107 S33: 0.1815 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9DXU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1000289035. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29565 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 43.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG3350, 0.2 M SODIUM REMARK 280 THIOCYANATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.80250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.43600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.80250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.43600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ARG A 3 REMARK 465 ASP A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 GLY A 25 REMARK 465 GLY A 26 REMARK 465 GLY A 27 REMARK 465 ARG A 28 REMARK 465 GLY A 29 REMARK 465 ALA A 30 REMARK 465 SER A 31 REMARK 465 ASP A 32 REMARK 465 ARG A 33 REMARK 465 ASP A 34 REMARK 465 ALA A 35 REMARK 465 ALA A 36 REMARK 465 SER A 37 REMARK 465 GLY A 38 REMARK 465 PRO A 39 REMARK 465 GLU A 40 REMARK 465 ALA A 41 REMARK 465 PRO A 42 REMARK 465 ASP A 137 REMARK 465 ALA A 138 REMARK 465 GLY A 139 REMARK 465 GLY A 140 REMARK 465 GLY A 141 REMARK 465 GLN A 142 REMARK 465 ARG A 143 REMARK 465 ARG A 230 REMARK 465 PRO A 231 REMARK 465 LYS A 232 REMARK 465 GLU A 233 REMARK 465 ALA A 234 REMARK 465 SER A 235 REMARK 465 SER A 236 REMARK 465 SER A 237 REMARK 465 ALA A 238 REMARK 465 SER A 239 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 160 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET A 6 CG REMARK 480 ARG A 22 NE CZ NH1 NH2 REMARK 480 MET A 43 N CA REMARK 480 GLN A 44 CD OE1 NE2 REMARK 480 LYS A 53 CD REMARK 480 ARG A 62 CZ NH1 REMARK 480 GLU A 64 CD REMARK 480 GLU A 150 CG CD REMARK 480 GLN A 151 CG REMARK 480 GLU A 163 OE2 REMARK 480 ARG A 173 CZ NH1 NH2 REMARK 480 GLU A 178 CD REMARK 480 GLU A 227 CD OE1 OE2 REMARK 480 GLU A 244 CD REMARK 480 PRO A 270 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 570 O HOH A 618 1.99 REMARK 500 OE1 GLN A 194 O HOH A 401 2.03 REMARK 500 O LEU A 226 O HOH A 402 2.07 REMARK 500 O TRP B 7 O2 TRS A 301 2.07 REMARK 500 O HOH A 618 O HOH A 619 2.14 REMARK 500 O HOH A 545 O HOH A 560 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 213 87.11 -150.57 REMARK 500 GLN B 13 58.75 -95.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 630 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 631 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 632 DISTANCE = 6.40 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 314 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 112 NE2 REMARK 620 2 HIS A 114 NE2 91.0 REMARK 620 3 HIS A 193 NE2 93.7 91.0 REMARK 620 4 TRS A 301 N 90.6 176.3 92.3 REMARK 620 5 TRS A 301 N 86.9 102.0 167.0 74.8 REMARK 620 6 TRS A 301 O1 89.4 175.8 84.8 7.6 82.2 REMARK 620 7 TRS A 301 O1 161.9 79.0 101.4 98.7 80.6 101.8 REMARK 620 8 TRS A 301 O2 77.5 88.7 171.2 88.4 16.3 95.5 87.2 REMARK 620 9 TRS A 301 O3 175.7 93.3 86.6 85.1 91.8 86.4 20.5 102.2 REMARK 620 N 1 2 3 4 5 6 7 8 DBREF 9DXU A 1 270 UNP Q96SZ5 AEDO_HUMAN 1 270 DBREF 9DXU B 0 15 PDB 9DXU 9DXU 0 15 SEQADV 9DXU SER A 0 UNP Q96SZ5 EXPRESSION TAG SEQADV 9DXU SER A 18 UNP Q96SZ5 CYS 18 CONFLICT SEQADV 9DXU SER A 239 UNP Q96SZ5 CYS 239 CONFLICT SEQRES 1 A 271 SER MET PRO ARG ASP ASN MET ALA SER LEU ILE GLN ARG SEQRES 2 A 271 ILE ALA ARG GLN ALA SER LEU THR PHE ARG GLY SER GLY SEQRES 3 A 271 GLY GLY ARG GLY ALA SER ASP ARG ASP ALA ALA SER GLY SEQRES 4 A 271 PRO GLU ALA PRO MET GLN PRO GLY PHE PRO GLU ASN LEU SEQRES 5 A 271 SER LYS LEU LYS SER LEU LEU THR GLN LEU ARG ALA GLU SEQRES 6 A 271 ASP LEU ASN ILE ALA PRO ARG LYS ALA THR LEU GLN PRO SEQRES 7 A 271 LEU PRO PRO ASN LEU PRO PRO VAL THR TYR MET HIS ILE SEQRES 8 A 271 TYR GLU THR ASP GLY PHE SER LEU GLY VAL PHE LEU LEU SEQRES 9 A 271 LYS SER GLY THR SER ILE PRO LEU HIS ASP HIS PRO GLY SEQRES 10 A 271 MET HIS GLY MET LEU LYS VAL LEU TYR GLY THR VAL ARG SEQRES 11 A 271 ILE SER CYS MET ASP LYS LEU ASP ALA GLY GLY GLY GLN SEQRES 12 A 271 ARG PRO ARG ALA LEU PRO PRO GLU GLN GLN PHE GLU PRO SEQRES 13 A 271 PRO LEU GLN PRO ARG GLU ARG GLU ALA VAL ARG PRO GLY SEQRES 14 A 271 VAL LEU ARG SER ARG ALA GLU TYR THR GLU ALA SER GLY SEQRES 15 A 271 PRO CYS ILE LEU THR PRO HIS ARG ASP ASN LEU HIS GLN SEQRES 16 A 271 ILE ASP ALA VAL GLU GLY PRO ALA ALA PHE LEU ASP ILE SEQRES 17 A 271 LEU ALA PRO PRO TYR ASP PRO ASP ASP GLY ARG ASP CYS SEQRES 18 A 271 HIS TYR TYR ARG VAL LEU GLU PRO VAL ARG PRO LYS GLU SEQRES 19 A 271 ALA SER SER SER ALA SER ASP LEU PRO ARG GLU VAL TRP SEQRES 20 A 271 LEU LEU GLU THR PRO GLN ALA ASP ASP PHE TRP CYS GLU SEQRES 21 A 271 GLY GLU PRO TYR PRO GLY PRO LYS VAL PHE PRO SEQRES 1 B 16 ACE TYR ILE VAL LYS THR PHE TRP LEU GLY SER HIS ARG SEQRES 2 B 16 GLN CYS NH2 HET ACE B 0 3 HET NH2 B 15 1 HET TRS A 301 24 HET GOL A 302 6 HET GOL A 303 6 HET GOL A 304 6 HET SCN A 305 3 HET SCN A 306 3 HET SCN A 307 3 HET SCN A 308 3 HET SCN A 309 3 HET SCN A 310 3 HET SCN A 311 3 HET SCN A 312 3 HET SCN A 313 3 HET CO A 314 1 HET SCN B 101 3 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM GOL GLYCEROL HETNAM SCN THIOCYANATE ION HETNAM CO COBALT (II) ION HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ACE C2 H4 O FORMUL 2 NH2 H2 N FORMUL 3 TRS C4 H12 N O3 1+ FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 SCN 10(C N S 1-) FORMUL 16 CO CO 2+ FORMUL 18 HOH *244(H2 O) HELIX 1 AA1 SER A 8 ARG A 22 1 15 HELIX 2 AA2 GLY A 46 LEU A 61 1 16 HELIX 3 AA3 ARG A 62 ASN A 67 5 6 HELIX 4 AA4 GLN A 158 VAL A 165 1 8 HELIX 5 AA5 ASP A 213 GLY A 217 5 5 SHEET 1 AA110 CYS A 183 LEU A 185 0 SHEET 2 AA110 HIS A 118 LYS A 135 -1 N LEU A 121 O CYS A 183 SHEET 3 AA110 ARG A 166 TYR A 176 -1 O TYR A 176 N VAL A 128 SHEET 4 AA110 ARG A 243 THR A 250 -1 O ARG A 243 N LEU A 170 SHEET 5 AA110 TYR A 222 LEU A 226 -1 N LEU A 226 O TRP A 246 SHEET 6 AA110 SER A 108 HIS A 112 -1 N LEU A 111 O TYR A 223 SHEET 7 AA110 LEU A 192 ALA A 209 -1 O ILE A 195 N ILE A 109 SHEET 8 AA110 SER A 97 LEU A 103 -1 N LEU A 103 O ALA A 202 SHEET 9 AA110 VAL A 85 GLU A 92 -1 N MET A 88 O VAL A 100 SHEET 10 AA110 CYS A 258 GLY A 260 1 O GLU A 259 N TYR A 87 SHEET 1 AA2 6 CYS A 183 LEU A 185 0 SHEET 2 AA2 6 HIS A 118 LYS A 135 -1 N LEU A 121 O CYS A 183 SHEET 3 AA2 6 LEU A 192 ALA A 209 -1 O ALA A 209 N HIS A 118 SHEET 4 AA2 6 SER A 97 LEU A 103 -1 N LEU A 103 O ALA A 202 SHEET 5 AA2 6 VAL A 85 GLU A 92 -1 N MET A 88 O VAL A 100 SHEET 6 AA2 6 CYS A 258 GLY A 260 1 O GLU A 259 N TYR A 87 SHEET 1 AA3 2 ILE B 2 THR B 5 0 SHEET 2 AA3 2 GLY B 9 ARG B 12 -1 O HIS B 11 N VAL B 3 LINK C ACE B 0 N TYR B 1 1555 1555 1.33 LINK CH3 ACE B 0 SG CYS B 14 1555 1555 1.77 LINK C CYS B 14 N NH2 B 15 1555 1555 1.43 LINK NE2 HIS A 112 CO CO A 314 1555 1555 2.07 LINK NE2 HIS A 114 CO CO A 314 1555 1555 2.14 LINK NE2 HIS A 193 CO CO A 314 1555 1555 2.14 LINK N BTRS A 301 CO CO A 314 1555 1555 1.98 LINK N CTRS A 301 CO CO A 314 1555 1555 1.92 LINK O1 ATRS A 301 CO CO A 314 1555 1555 2.24 LINK O1 CTRS A 301 CO CO A 314 1555 1555 2.33 LINK O2 ATRS A 301 CO CO A 314 1555 1555 2.47 LINK O3 ATRS A 301 CO CO A 314 1555 1555 2.03 LINK O3 BTRS A 301 CO CO A 314 1555 1555 2.49 LINK CO CO A 314 O EHOH A 431 1555 1555 2.09 LINK CO CO A 314 O GHOH A 431 1555 1555 1.87 CISPEP 1 GLU A 154 PRO A 155 0 -4.93 CISPEP 2 ALA A 209 PRO A 210 0 -7.33 CISPEP 3 LEU A 241 PRO A 242 0 0.85 CRYST1 36.111 71.605 108.872 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027692 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013966 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009185 0.00000 CONECT 726 2138 CONECT 744 2138 CONECT 1346 2138 CONECT 1925 1926 1927 1928 CONECT 1926 1925 CONECT 1927 1925 2066 CONECT 1928 1925 CONECT 2063 2067 CONECT 2066 1927 CONECT 2067 2063 CONECT 2069 2072 2075 2078 2081 CONECT 2070 2073 2076 2079 2082 CONECT 2071 2074 2077 2080 2083 CONECT 2072 2069 2084 CONECT 2073 2070 2085 CONECT 2074 2071 2086 CONECT 2075 2069 2087 CONECT 2076 2070 2088 CONECT 2077 2071 2089 CONECT 2078 2069 2090 CONECT 2079 2070 2091 CONECT 2080 2071 2092 CONECT 2081 2069 CONECT 2082 2070 2138 CONECT 2083 2071 2138 CONECT 2084 2072 2138 CONECT 2085 2073 CONECT 2086 2074 2138 CONECT 2087 2075 2138 CONECT 2088 2076 CONECT 2089 2077 CONECT 2090 2078 2138 CONECT 2091 2079 2138 CONECT 2092 2080 CONECT 2093 2094 2095 CONECT 2094 2093 CONECT 2095 2093 2096 2097 CONECT 2096 2095 CONECT 2097 2095 2098 CONECT 2098 2097 CONECT 2099 2100 2101 CONECT 2100 2099 CONECT 2101 2099 2102 2103 CONECT 2102 2101 CONECT 2103 2101 2104 CONECT 2104 2103 CONECT 2105 2106 2107 CONECT 2106 2105 CONECT 2107 2105 2108 2109 CONECT 2108 2107 CONECT 2109 2107 2110 CONECT 2110 2109 CONECT 2111 2112 CONECT 2112 2111 2113 CONECT 2113 2112 CONECT 2114 2115 CONECT 2115 2114 2116 CONECT 2116 2115 CONECT 2117 2118 CONECT 2118 2117 2119 CONECT 2119 2118 CONECT 2120 2121 CONECT 2121 2120 2122 CONECT 2122 2121 CONECT 2123 2124 CONECT 2124 2123 2125 CONECT 2125 2124 CONECT 2126 2127 CONECT 2127 2126 2128 CONECT 2128 2127 CONECT 2129 2130 CONECT 2130 2129 2131 CONECT 2131 2130 CONECT 2132 2133 CONECT 2133 2132 2134 CONECT 2134 2133 CONECT 2135 2136 CONECT 2136 2135 2137 CONECT 2137 2136 CONECT 2138 726 744 1346 2082 CONECT 2138 2083 2084 2086 2087 CONECT 2138 2090 2091 2173 2175 CONECT 2139 2140 CONECT 2140 2139 2141 CONECT 2141 2140 CONECT 2173 2138 CONECT 2175 2138 MASTER 438 0 17 5 18 0 0 6 2232 2 87 23 END