data_9DYY # _entry.id 9DYY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.403 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9DYY pdb_00009dyy 10.2210/pdb9dyy/pdb WWPDB D_1000289118 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-03-26 ? 2 'Structure model' 1 1 2025-04-16 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9DYY _pdbx_database_status.recvd_initial_deposition_date 2024-10-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email jraskato@ucsc.edu _pdbx_contact_author.name_first Jevgenij _pdbx_contact_author.name_last Raskatov _pdbx_contact_author.name_mi A _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0082-9113 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sawaya, M.R.' 1 0000-0003-0874-9043 'Raskatov, J.A.' 2 0000-0002-0082-9113 'Hazari, A.' 3 0009-0005-2071-1322 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Chem Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-6520 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 16 _citation.language ? _citation.page_first 5907 _citation.page_last 5917 _citation.title ;Formation of rippled beta-sheets from mixed chirality linear and cyclic peptides-new structural motifs based on the pauling-corey rippled beta-sheet. ; _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/d4sc08079c _citation.pdbx_database_id_PubMed 40060095 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hazari, A.' 1 ? primary 'Sawaya, M.R.' 2 ? primary 'Lee, H.' 3 ? primary 'Sajimon, M.' 4 ? primary 'Kim, H.' 5 ? primary 'Goddard Iii, W.A.' 6 ? primary 'Eisenberg, D.' 7 ? primary 'Raskatov, J.A.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'VVGG(DVA)(DVA)' 526.650 4 ? ? ? ? 2 non-polymer syn 1,1,1,3,3,3-hexafluoropropan-2-ol 168.038 4 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'VVGG(DVA)(DVA)(NH2)' _entity_poly.pdbx_seq_one_letter_code_can VVGGVVX _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 1,1,1,3,3,3-hexafluoropropan-2-ol _pdbx_entity_nonpoly.comp_id CFH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 VAL n 1 3 GLY n 1 4 GLY n 1 5 DVA n 1 6 DVA n 1 7 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 7 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CFH non-polymer . 1,1,1,3,3,3-hexafluoropropan-2-ol ? 'C3 H2 F6 O' 168.038 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 1 VAL VAL A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 DVA 5 5 5 DVA DVA A . n A 1 6 DVA 6 6 6 DVA DVY A . n A 1 7 NH2 7 7 6 NH2 DVY A . n B 1 1 VAL 1 1 1 VAL VAL B . n B 1 2 VAL 2 2 2 VAL VAL B . n B 1 3 GLY 3 3 3 GLY GLY B . n B 1 4 GLY 4 4 4 GLY GLY B . n B 1 5 DVA 5 5 5 DVA DVA B . n B 1 6 DVA 6 6 6 DVA DVY B . n B 1 7 NH2 7 7 6 NH2 DVY B . n C 1 1 VAL 1 1 1 VAL VAL C . n C 1 2 VAL 2 2 2 VAL VAL C . n C 1 3 GLY 3 3 3 GLY GLY C . n C 1 4 GLY 4 4 4 GLY GLY C . n C 1 5 DVA 5 5 5 DVA DVA C . n C 1 6 DVA 6 6 6 DVA DVY C . n C 1 7 NH2 7 7 6 NH2 DVY C . n D 1 1 VAL 1 1 1 VAL VAL D . n D 1 2 VAL 2 2 2 VAL VAL D . n D 1 3 GLY 3 3 3 GLY GLY D . n D 1 4 GLY 4 4 4 GLY GLY D . n D 1 5 DVA 5 5 5 DVA DVA D . n D 1 6 DVA 6 6 6 DVA DVY D . n D 1 7 NH2 7 7 6 NH2 DVY D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CFH 1 101 8 CFH CFH C . F 2 CFH 1 102 8 CFH CFH C . G 2 CFH 1 101 8 CFH CFH D . H 2 CFH 1 102 8 CFH CFH D . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0419 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? 20241002 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? 20241002 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? 2013/2 4 # _cell.entry_id 9DYY _cell.length_a 33.120 _cell.length_b 44.270 _cell.length_c 9.340 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DYY _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9DYY _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.63 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 24.32 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'BATCH MODE' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'hexafluoroisopropanol and water' _exptl_crystal_grow.pdbx_pH_range 3-4 _exptl_crystal_grow.temp 298 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-10-08 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979330 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 17-ID-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979330 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID-2 _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9DYY _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.3 _reflns.d_resolution_low 26.52 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 3738 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.0 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 3.68 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.271 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.995 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.241 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 1.30 1.37 ? ? ? ? ? ? 531 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? ? 1 1 0.343 ? ? ? ? 1.986 ? ? ? ? ? ? ? ? ? 1.37 1.45 ? ? ? ? ? ? 471 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? ? 2 1 0.638 ? ? ? ? 1.23 ? ? ? ? ? ? ? ? ? 1.45 1.55 ? ? ? ? ? ? 499 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1.125 ? ? 3 1 0.728 ? ? ? ? 1.012 ? ? ? ? ? ? ? ? ? 1.55 1.68 ? ? ? ? ? ? 441 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.785 ? ? 4 1 0.902 ? ? ? ? 0.702 ? ? ? ? ? ? ? ? ? 1.68 1.84 ? ? ? ? ? ? 422 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.653 ? ? 5 1 0.908 ? ? ? ? 0.584 ? ? ? ? ? ? ? ? ? 1.84 2.06 ? ? ? ? ? ? 369 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.295 ? ? 6 1 0.984 ? ? ? ? 0.264 ? ? ? ? ? ? ? ? ? 2.06 2.37 ? ? ? ? ? ? 338 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.21 ? ? 7 1 0.98 ? ? ? ? 0.188 ? ? ? ? ? ? ? ? ? 2.37 2.91 ? ? ? ? ? ? 289 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.197 ? ? 8 1 0.994 ? ? ? ? 0.173 ? ? ? ? ? ? ? ? ? 2.91 4.11 ? ? ? ? ? ? 228 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.153 ? ? 9 1 0.988 ? ? ? ? 0.133 ? ? ? ? ? ? ? ? ? 4.11 26.52 ? ? ? ? ? ? 150 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 0.091 ? ? 10 1 0.998 ? ? ? ? 0.077 ? ? ? ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 9DYY _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 3738 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.52 _refine.ls_d_res_high 1.30 _refine.ls_percent_reflns_obs 99.5 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.181 _refine.ls_R_factor_R_free 0.188 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.997 _refine.ls_number_reflns_R_free 374 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.979 _refine.correlation_coeff_Fo_to_Fc_free 0.986 _refine.B_iso_mean 12.62 _refine.aniso_B[1][1] -1.39300 _refine.aniso_B[2][2] 0.08900 _refine.aniso_B[3][3] 1.30500 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ;HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT FILE ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R 0.082 _refine.pdbx_overall_ESU_R_Free 0.060 _refine.overall_SU_ML 0.068 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.125 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 148 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 40 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 188 _refine_hist.d_res_high 1.30 _refine_hist.d_res_low 26.52 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.019 0.013 ? 180 'X-RAY DIFFRACTION' ? r_bond_other_d 0.004 0.016 ? 188 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.845 1.605 ? 244 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.350 1.628 ? 412 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.311 5.000 ? 16 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 4.085 10.000 ? 12 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 1.837 0.200 ? 44 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 136 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 32 'X-RAY DIFFRACTION' ? r_nbd_refined 0.126 0.200 ? 27 'X-RAY DIFFRACTION' ? r_nbd_other 0.160 0.200 ? 49 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.147 0.200 ? 98 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.133 0.200 ? 8 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 3.251 0.929 ? 92 'X-RAY DIFFRACTION' ? r_mcbond_other 3.236 0.930 ? 93 'X-RAY DIFFRACTION' ? r_mcangle_it 4.232 1.642 ? 96 'X-RAY DIFFRACTION' ? r_mcangle_other 4.225 1.642 ? 97 'X-RAY DIFFRACTION' ? r_scbond_it 11.333 1.648 ? 88 'X-RAY DIFFRACTION' ? r_scbond_other 11.062 1.629 ? 86 'X-RAY DIFFRACTION' ? r_scangle_it 16.371 2.910 ? 148 'X-RAY DIFFRACTION' ? r_scangle_other 16.159 2.892 ? 146 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 4.750 3.000 ? 368 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.d_res_high 1.30 _refine_ls_shell.d_res_low 1.45 _refine_ls_shell.number_reflns_R_work 922 _refine_ls_shell.R_factor_R_work 0.3160 _refine_ls_shell.percent_reflns_obs 99.90 _refine_ls_shell.R_factor_R_free 0.3420 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 102 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 9DYY _struct.title 'peptide of mixed chirality, VVGG(DVA)(DVA), assembles into a rippled beta sheet' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9DYY _struct_keywords.text 'rippled beta sheet, racemic mixture, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9DYY _struct_ref.pdbx_db_accession 9DYY _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9DYY A 1 ? 7 ? 9DYY 1 ? 7 ? 1 7 2 1 9DYY B 1 ? 7 ? 9DYY 1 ? 7 ? 1 7 3 1 9DYY C 1 ? 7 ? 9DYY 1 ? 7 ? 1 7 4 1 9DYY D 1 ? 7 ? 9DYY 1 ? 7 ? 1 7 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H 1 2 A,B,C,D,E,F,G,H 1 3 A,B,C,D,E,F,G,H 1 4 A,B,C,D,E,F,G,H # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_545 x,y-1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -44.2700000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 44.2700000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 1_535 x,y-2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -88.5400000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 4 C ? ? ? 1_555 A DVA 5 N ? ? A GLY 4 A DVA 5 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? A DVA 5 C ? ? ? 1_555 A DVA 6 N ? ? A DVA 5 A DVA 6 1_555 ? ? ? ? ? ? ? 1.300 ? ? covale3 covale both ? A DVA 6 C ? ? ? 1_555 A NH2 7 N ? ? A DVA 6 A NH2 7 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale4 covale both ? B GLY 4 C ? ? ? 1_555 B DVA 5 N ? ? B GLY 4 B DVA 5 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale5 covale both ? B DVA 5 C ? ? ? 1_555 B DVA 6 N ? ? B DVA 5 B DVA 6 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale6 covale both ? B DVA 6 C ? ? ? 1_555 B NH2 7 N ? ? B DVA 6 B NH2 7 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale7 covale both ? C GLY 4 C ? ? ? 1_555 C DVA 5 N ? ? C GLY 4 C DVA 5 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale8 covale both ? C DVA 5 C ? ? ? 1_555 C DVA 6 N ? ? C DVA 5 C DVA 6 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale9 covale both ? C DVA 6 C ? ? ? 1_555 C NH2 7 N ? ? C DVA 6 C NH2 7 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale10 covale both ? D GLY 4 C ? ? ? 1_555 D DVA 5 N ? ? D GLY 4 D DVA 5 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale11 covale both ? D DVA 5 C ? ? ? 1_555 D DVA 6 N ? ? D DVA 5 D DVA 6 1_555 ? ? ? ? ? ? ? 1.304 ? ? covale12 covale both ? D DVA 6 C ? ? ? 1_555 D NH2 7 N ? ? D DVA 6 D NH2 7 1_555 ? ? ? ? ? ? ? 1.334 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NH2 A 7 ? DVA A 6 ? NH2 A 7 ? 1_555 DVA A 6 ? 1_555 . . DVA 25 NH2 None 'Terminal amidation' 2 NH2 B 7 ? DVA B 6 ? NH2 B 7 ? 1_555 DVA B 6 ? 1_555 . . DVA 25 NH2 None 'Terminal amidation' 3 NH2 C 7 ? DVA C 6 ? NH2 C 7 ? 1_555 DVA C 6 ? 1_555 . . DVA 25 NH2 None 'Terminal amidation' 4 NH2 D 7 ? DVA D 6 ? NH2 D 7 ? 1_555 DVA D 6 ? 1_555 . . DVA 25 NH2 None 'Terminal amidation' # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 2 ? DVA A 5 ? VAL A 2 DVA A 5 AA1 2 VAL B 2 ? DVA B 5 ? VAL B 2 DVA B 5 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id GLY _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 4 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id GLY _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 4 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id GLY _pdbx_struct_sheet_hbond.range_2_label_asym_id B _pdbx_struct_sheet_hbond.range_2_label_seq_id 3 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id GLY _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id 3 # _pdbx_entry_details.entry_id 9DYY _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CFH F7 F N N 1 CFH C1 C N N 2 CFH F5 F N N 3 CFH F6 F N N 4 CFH C2 C N N 5 CFH O4 O N N 6 CFH C3 C N N 7 CFH F10 F N N 8 CFH F8 F N N 9 CFH F9 F N N 10 CFH H2 H N N 11 CFH HO4 H N N 12 DVA N N N N 13 DVA CA C N R 14 DVA CB C N N 15 DVA CG1 C N N 16 DVA CG2 C N N 17 DVA C C N N 18 DVA O O N N 19 DVA OXT O N N 20 DVA H H N N 21 DVA H2 H N N 22 DVA HA H N N 23 DVA HB H N N 24 DVA HG11 H N N 25 DVA HG12 H N N 26 DVA HG13 H N N 27 DVA HG21 H N N 28 DVA HG22 H N N 29 DVA HG23 H N N 30 DVA HXT H N N 31 GLY N N N N 32 GLY CA C N N 33 GLY C C N N 34 GLY O O N N 35 GLY OXT O N N 36 GLY H H N N 37 GLY H2 H N N 38 GLY HA2 H N N 39 GLY HA3 H N N 40 GLY HXT H N N 41 NH2 N N N N 42 NH2 HN1 H N N 43 NH2 HN2 H N N 44 VAL N N N N 45 VAL CA C N S 46 VAL C C N N 47 VAL O O N N 48 VAL CB C N N 49 VAL CG1 C N N 50 VAL CG2 C N N 51 VAL OXT O N N 52 VAL H H N N 53 VAL H2 H N N 54 VAL HA H N N 55 VAL HB H N N 56 VAL HG11 H N N 57 VAL HG12 H N N 58 VAL HG13 H N N 59 VAL HG21 H N N 60 VAL HG22 H N N 61 VAL HG23 H N N 62 VAL HXT H N N 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CFH F7 C1 sing N N 1 CFH C1 F5 sing N N 2 CFH C1 F6 sing N N 3 CFH C1 C2 sing N N 4 CFH C2 O4 sing N N 5 CFH C2 C3 sing N N 6 CFH C3 F10 sing N N 7 CFH C3 F8 sing N N 8 CFH C3 F9 sing N N 9 CFH C2 H2 sing N N 10 CFH O4 HO4 sing N N 11 DVA N CA sing N N 12 DVA N H sing N N 13 DVA N H2 sing N N 14 DVA CA CB sing N N 15 DVA CA C sing N N 16 DVA CA HA sing N N 17 DVA CB CG1 sing N N 18 DVA CB CG2 sing N N 19 DVA CB HB sing N N 20 DVA CG1 HG11 sing N N 21 DVA CG1 HG12 sing N N 22 DVA CG1 HG13 sing N N 23 DVA CG2 HG21 sing N N 24 DVA CG2 HG22 sing N N 25 DVA CG2 HG23 sing N N 26 DVA C O doub N N 27 DVA C OXT sing N N 28 DVA OXT HXT sing N N 29 GLY N CA sing N N 30 GLY N H sing N N 31 GLY N H2 sing N N 32 GLY CA C sing N N 33 GLY CA HA2 sing N N 34 GLY CA HA3 sing N N 35 GLY C O doub N N 36 GLY C OXT sing N N 37 GLY OXT HXT sing N N 38 NH2 N HN1 sing N N 39 NH2 N HN2 sing N N 40 VAL N CA sing N N 41 VAL N H sing N N 42 VAL N H2 sing N N 43 VAL CA C sing N N 44 VAL CA CB sing N N 45 VAL CA HA sing N N 46 VAL C O doub N N 47 VAL C OXT sing N N 48 VAL CB CG1 sing N N 49 VAL CB CG2 sing N N 50 VAL CB HB sing N N 51 VAL CG1 HG11 sing N N 52 VAL CG1 HG12 sing N N 53 VAL CG1 HG13 sing N N 54 VAL CG2 HG21 sing N N 55 VAL CG2 HG22 sing N N 56 VAL CG2 HG23 sing N N 57 VAL OXT HXT sing N N 58 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' R01AG070895 1 'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' R01AG048120 2 'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' R01AG074954 3 # _atom_sites.entry_id 9DYY _atom_sites.fract_transf_matrix[1][1] 0.030193 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022589 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.107066 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.3103 20.8439 1.0201 10.2075 1.5888 0.5687 0.8651 51.6512 0.2156 F 9 9 3.5395 10.2825 2.6414 4.2944 1.5171 0.2615 1.0244 26.1476 0.3042 H 1 1 0.4930 10.5109 0.3229 26.1257 0.1402 3.1424 0.0408 57.7997 0.0030 N 7 7 12.2220 0.0057 3.1346 9.8933 2.0141 28.9975 1.1672 0.5826 -11.5379 O 8 8 3.0487 13.2771 2.2870 5.7011 1.5464 0.3239 0.8671 32.9089 0.2508 # loop_ # loop_ #