HEADER TRANSCRIPTION/DNA 16-OCT-24 9DZM TITLE DIMERIC HUMAN OCT2 (POU2F2) POU DOMAIN BOUND TO PALINDROMIC MORE DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*TP*CP*CP*TP*CP*AP*TP*GP*CP*AP*TP*AP*TP*GP*CP*AP*TP*GP*AP*GP*G)- COMPND 4 3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*TP*CP*CP*TP*CP*AP*TP*GP*CP*AP*TP*AP*TP*GP*CP*AP*TP*GP*AP*GP*GP*A)- COMPND 10 3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: POU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 2; COMPND 15 CHAIN: C, D, E, F; COMPND 16 SYNONYM: LYMPHOID-RESTRICTED IMMUNOGLOBULIN OCTAMER-BINDING PROTEIN COMPND 17 NF-A2,OCTAMER-BINDING PROTEIN 2,OCT-2,OCTAMER-BINDING TRANSCRIPTION COMPND 18 FACTOR 2,OTF-2; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: POU2F2, OCT2, OTF2; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION FACTOR, PROTEIN-DNA COMPLEX, TRANSCRIPTION-DNA COMPLEX, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.R.TERRELL,G.M.K.POON REVDAT 3 12-MAR-25 9DZM 1 JRNL REVDAT 2 05-MAR-25 9DZM 1 JRNL REVDAT 1 23-OCT-24 9DZM 0 JRNL AUTH J.R.TERRELL,G.M.K.POON JRNL TITL COUPLED HETEROGENEITY TO DIMERIC SITE-SPECIFIC BINDING BY JRNL TITL 2 THE POU-FAMILY TRANSCRIPTION FACTOR OCT2. JRNL REF J.PHYS.CHEM.B V. 129 2138 2025 JRNL REFN ISSN 1089-5647 JRNL PMID 39960871 JRNL DOI 10.1021/ACS.JPCB.4C07071 REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 16380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.9100 - 5.8100 0.95 1232 138 0.1819 0.2135 REMARK 3 2 5.8000 - 4.6100 0.96 1232 136 0.1907 0.1960 REMARK 3 3 4.6100 - 4.0300 0.95 1220 136 0.1830 0.2023 REMARK 3 4 4.0300 - 3.6600 0.96 1260 140 0.2001 0.2176 REMARK 3 5 3.6600 - 3.4000 0.95 1212 135 0.2044 0.2577 REMARK 3 6 3.4000 - 3.2000 0.96 1229 138 0.2267 0.2357 REMARK 3 7 3.2000 - 3.0400 0.96 1237 137 0.2770 0.3039 REMARK 3 8 3.0400 - 2.9100 0.97 1236 138 0.2593 0.3277 REMARK 3 9 2.9100 - 2.8000 0.94 1238 137 0.2703 0.3020 REMARK 3 10 2.8000 - 2.7000 0.95 1214 135 0.2772 0.3180 REMARK 3 11 2.7000 - 2.6100 0.95 1236 137 0.3333 0.3813 REMARK 3 12 2.6100 - 2.5400 0.95 1194 133 0.3654 0.3615 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.768 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3231 REMARK 3 ANGLE : 0.886 4533 REMARK 3 CHIRALITY : 0.044 508 REMARK 3 PLANARITY : 0.006 434 REMARK 3 DIHEDRAL : 23.225 1285 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9DZM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1000289135. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920105 REMARK 200 MONOCHROMATOR : VERTICAL DCM REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16395 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 33.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.06205 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.40240 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150 MM KBR, 27.5% PEG MME 2000 MIXED REMARK 280 1:1 WITH 200 UM DNA:PROTEIN COMPLEX, PH 6.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 193 REMARK 465 SER C 194 REMARK 465 HIS C 195 REMARK 465 MET C 196 REMARK 465 SER C 278 REMARK 465 LEU C 279 REMARK 465 PRO C 280 REMARK 465 SER C 281 REMARK 465 PRO C 282 REMARK 465 ASN C 283 REMARK 465 GLN C 284 REMARK 465 LEU C 285 REMARK 465 SER C 286 REMARK 465 SER C 287 REMARK 465 PRO C 288 REMARK 465 SER C 289 REMARK 465 LEU C 290 REMARK 465 GLY C 291 REMARK 465 PHE C 292 REMARK 465 ASP C 293 REMARK 465 GLY C 294 REMARK 465 LEU C 295 REMARK 465 PRO C 296 REMARK 465 GLY C 297 REMARK 465 ARG C 298 REMARK 465 ARG C 299 REMARK 465 ARG C 300 REMARK 465 LYS C 301 REMARK 465 LYS C 302 REMARK 465 ARG C 303 REMARK 465 THR C 304 REMARK 465 SER C 305 REMARK 465 ILE C 306 REMARK 465 GLU C 307 REMARK 465 THR C 308 REMARK 465 ASN C 309 REMARK 465 VAL C 310 REMARK 465 ARG C 311 REMARK 465 PHE C 312 REMARK 465 ALA C 313 REMARK 465 LEU C 314 REMARK 465 GLU C 315 REMARK 465 LYS C 316 REMARK 465 SER C 317 REMARK 465 PHE C 318 REMARK 465 LEU C 319 REMARK 465 ALA C 320 REMARK 465 ASN C 321 REMARK 465 GLN C 322 REMARK 465 LYS C 323 REMARK 465 PRO C 324 REMARK 465 THR C 325 REMARK 465 SER C 326 REMARK 465 GLU C 327 REMARK 465 GLU C 328 REMARK 465 ILE C 329 REMARK 465 LEU C 330 REMARK 465 LEU C 331 REMARK 465 ILE C 332 REMARK 465 ALA C 333 REMARK 465 GLU C 334 REMARK 465 GLN C 335 REMARK 465 LEU C 336 REMARK 465 HIS C 337 REMARK 465 MET C 338 REMARK 465 GLU C 339 REMARK 465 LYS C 340 REMARK 465 GLU C 341 REMARK 465 VAL C 342 REMARK 465 ILE C 343 REMARK 465 ARG C 344 REMARK 465 VAL C 345 REMARK 465 TRP C 346 REMARK 465 PHE C 347 REMARK 465 CYS C 348 REMARK 465 ASN C 349 REMARK 465 ARG C 350 REMARK 465 ARG C 351 REMARK 465 GLN C 352 REMARK 465 LYS C 353 REMARK 465 GLU C 354 REMARK 465 LYS C 355 REMARK 465 ARG C 356 REMARK 465 ILE C 357 REMARK 465 ASN C 358 REMARK 465 PRO C 359 REMARK 465 GLY D 193 REMARK 465 SER D 194 REMARK 465 HIS D 195 REMARK 465 MET D 196 REMARK 465 GLU D 197 REMARK 465 GLU D 198 REMARK 465 SER D 277 REMARK 465 SER D 278 REMARK 465 LEU D 279 REMARK 465 PRO D 280 REMARK 465 SER D 281 REMARK 465 PRO D 282 REMARK 465 ASN D 283 REMARK 465 GLN D 284 REMARK 465 LEU D 285 REMARK 465 SER D 286 REMARK 465 SER D 287 REMARK 465 PRO D 288 REMARK 465 SER D 289 REMARK 465 LEU D 290 REMARK 465 GLY D 291 REMARK 465 PHE D 292 REMARK 465 ASP D 293 REMARK 465 GLY D 294 REMARK 465 LEU D 295 REMARK 465 PRO D 296 REMARK 465 GLY D 297 REMARK 465 ARG D 298 REMARK 465 ARG D 299 REMARK 465 ARG D 300 REMARK 465 LYS D 301 REMARK 465 LYS D 302 REMARK 465 ARG D 303 REMARK 465 THR D 304 REMARK 465 SER D 305 REMARK 465 ILE D 306 REMARK 465 GLU D 307 REMARK 465 THR D 308 REMARK 465 ASN D 309 REMARK 465 VAL D 310 REMARK 465 ARG D 311 REMARK 465 PHE D 312 REMARK 465 ALA D 313 REMARK 465 LEU D 314 REMARK 465 GLU D 315 REMARK 465 LYS D 316 REMARK 465 SER D 317 REMARK 465 PHE D 318 REMARK 465 LEU D 319 REMARK 465 ALA D 320 REMARK 465 ASN D 321 REMARK 465 GLN D 322 REMARK 465 LYS D 323 REMARK 465 PRO D 324 REMARK 465 THR D 325 REMARK 465 SER D 326 REMARK 465 GLU D 327 REMARK 465 GLU D 328 REMARK 465 ILE D 329 REMARK 465 LEU D 330 REMARK 465 LEU D 331 REMARK 465 ILE D 332 REMARK 465 ALA D 333 REMARK 465 GLU D 334 REMARK 465 GLN D 335 REMARK 465 LEU D 336 REMARK 465 HIS D 337 REMARK 465 MET D 338 REMARK 465 GLU D 339 REMARK 465 LYS D 340 REMARK 465 GLU D 341 REMARK 465 VAL D 342 REMARK 465 ILE D 343 REMARK 465 ARG D 344 REMARK 465 VAL D 345 REMARK 465 TRP D 346 REMARK 465 PHE D 347 REMARK 465 CYS D 348 REMARK 465 ASN D 349 REMARK 465 ARG D 350 REMARK 465 ARG D 351 REMARK 465 GLN D 352 REMARK 465 LYS D 353 REMARK 465 GLU D 354 REMARK 465 LYS D 355 REMARK 465 ARG D 356 REMARK 465 ILE D 357 REMARK 465 ASN D 358 REMARK 465 PRO D 359 REMARK 465 GLY E 191 REMARK 465 SER E 192 REMARK 465 HIS E 193 REMARK 465 MET E 194 REMARK 465 GLU E 195 REMARK 465 GLU E 196 REMARK 465 PRO E 197 REMARK 465 SER E 198 REMARK 465 ASP E 199 REMARK 465 LEU E 200 REMARK 465 GLU E 201 REMARK 465 GLU E 202 REMARK 465 LEU E 203 REMARK 465 GLU E 204 REMARK 465 GLN E 205 REMARK 465 PHE E 206 REMARK 465 ALA E 207 REMARK 465 ARG E 208 REMARK 465 THR E 209 REMARK 465 PHE E 210 REMARK 465 LYS E 211 REMARK 465 GLN E 212 REMARK 465 ARG E 213 REMARK 465 ARG E 214 REMARK 465 ILE E 215 REMARK 465 LYS E 216 REMARK 465 LEU E 217 REMARK 465 GLY E 218 REMARK 465 PHE E 219 REMARK 465 THR E 220 REMARK 465 GLN E 221 REMARK 465 GLY E 222 REMARK 465 ASP E 223 REMARK 465 VAL E 224 REMARK 465 GLY E 225 REMARK 465 LEU E 226 REMARK 465 ALA E 227 REMARK 465 MET E 228 REMARK 465 GLY E 229 REMARK 465 LYS E 230 REMARK 465 LEU E 231 REMARK 465 TYR E 232 REMARK 465 GLY E 233 REMARK 465 ASN E 234 REMARK 465 ASP E 235 REMARK 465 PHE E 236 REMARK 465 SER E 237 REMARK 465 GLN E 238 REMARK 465 THR E 239 REMARK 465 THR E 240 REMARK 465 ILE E 241 REMARK 465 SER E 242 REMARK 465 ARG E 243 REMARK 465 PHE E 244 REMARK 465 GLU E 245 REMARK 465 ALA E 246 REMARK 465 LEU E 247 REMARK 465 ASN E 248 REMARK 465 LEU E 249 REMARK 465 SER E 250 REMARK 465 PHE E 251 REMARK 465 LYS E 252 REMARK 465 ASN E 253 REMARK 465 MET E 254 REMARK 465 CYS E 255 REMARK 465 LYS E 256 REMARK 465 LEU E 257 REMARK 465 LYS E 258 REMARK 465 PRO E 259 REMARK 465 LEU E 260 REMARK 465 LEU E 261 REMARK 465 GLU E 262 REMARK 465 LYS E 263 REMARK 465 TRP E 264 REMARK 465 LEU E 265 REMARK 465 ASN E 266 REMARK 465 ASP E 267 REMARK 465 ALA E 268 REMARK 465 GLU E 269 REMARK 465 THR E 270 REMARK 465 MET E 271 REMARK 465 SER E 272 REMARK 465 VAL E 273 REMARK 465 ASP E 274 REMARK 465 SER E 275 REMARK 465 SER E 276 REMARK 465 LEU E 277 REMARK 465 PRO E 278 REMARK 465 SER E 279 REMARK 465 PRO E 280 REMARK 465 ASN E 281 REMARK 465 GLN E 282 REMARK 465 LEU E 283 REMARK 465 SER E 284 REMARK 465 SER E 285 REMARK 465 PRO E 286 REMARK 465 SER E 287 REMARK 465 LEU E 288 REMARK 465 GLY E 289 REMARK 465 PHE E 290 REMARK 465 ASP E 291 REMARK 465 GLY E 292 REMARK 465 LEU E 293 REMARK 465 PRO E 294 REMARK 465 GLY E 295 REMARK 465 ARG E 296 REMARK 465 ARG E 297 REMARK 465 ARG E 298 REMARK 465 LYS E 299 REMARK 465 GLY F 191 REMARK 465 SER F 192 REMARK 465 HIS F 193 REMARK 465 MET F 194 REMARK 465 GLU F 195 REMARK 465 GLU F 196 REMARK 465 PRO F 197 REMARK 465 SER F 198 REMARK 465 ASP F 199 REMARK 465 LEU F 200 REMARK 465 GLU F 201 REMARK 465 GLU F 202 REMARK 465 LEU F 203 REMARK 465 GLU F 204 REMARK 465 GLN F 205 REMARK 465 PHE F 206 REMARK 465 ALA F 207 REMARK 465 ARG F 208 REMARK 465 THR F 209 REMARK 465 PHE F 210 REMARK 465 LYS F 211 REMARK 465 GLN F 212 REMARK 465 ARG F 213 REMARK 465 ARG F 214 REMARK 465 ILE F 215 REMARK 465 LYS F 216 REMARK 465 LEU F 217 REMARK 465 GLY F 218 REMARK 465 PHE F 219 REMARK 465 THR F 220 REMARK 465 GLN F 221 REMARK 465 GLY F 222 REMARK 465 ASP F 223 REMARK 465 VAL F 224 REMARK 465 GLY F 225 REMARK 465 LEU F 226 REMARK 465 ALA F 227 REMARK 465 MET F 228 REMARK 465 GLY F 229 REMARK 465 LYS F 230 REMARK 465 LEU F 231 REMARK 465 TYR F 232 REMARK 465 GLY F 233 REMARK 465 ASN F 234 REMARK 465 ASP F 235 REMARK 465 PHE F 236 REMARK 465 SER F 237 REMARK 465 GLN F 238 REMARK 465 THR F 239 REMARK 465 THR F 240 REMARK 465 ILE F 241 REMARK 465 SER F 242 REMARK 465 ARG F 243 REMARK 465 PHE F 244 REMARK 465 GLU F 245 REMARK 465 ALA F 246 REMARK 465 LEU F 247 REMARK 465 ASN F 248 REMARK 465 LEU F 249 REMARK 465 SER F 250 REMARK 465 PHE F 251 REMARK 465 LYS F 252 REMARK 465 ASN F 253 REMARK 465 MET F 254 REMARK 465 CYS F 255 REMARK 465 LYS F 256 REMARK 465 LEU F 257 REMARK 465 LYS F 258 REMARK 465 PRO F 259 REMARK 465 LEU F 260 REMARK 465 LEU F 261 REMARK 465 GLU F 262 REMARK 465 LYS F 263 REMARK 465 TRP F 264 REMARK 465 LEU F 265 REMARK 465 ASN F 266 REMARK 465 ASP F 267 REMARK 465 ALA F 268 REMARK 465 GLU F 269 REMARK 465 THR F 270 REMARK 465 MET F 271 REMARK 465 SER F 272 REMARK 465 VAL F 273 REMARK 465 ASP F 274 REMARK 465 SER F 275 REMARK 465 SER F 276 REMARK 465 LEU F 277 REMARK 465 PRO F 278 REMARK 465 SER F 279 REMARK 465 PRO F 280 REMARK 465 ASN F 281 REMARK 465 GLN F 282 REMARK 465 LEU F 283 REMARK 465 SER F 284 REMARK 465 SER F 285 REMARK 465 PRO F 286 REMARK 465 SER F 287 REMARK 465 LEU F 288 REMARK 465 GLY F 289 REMARK 465 PHE F 290 REMARK 465 ASP F 291 REMARK 465 GLY F 292 REMARK 465 LEU F 293 REMARK 465 PRO F 294 REMARK 465 GLY F 295 REMARK 465 ARG F 296 REMARK 465 ARG F 297 REMARK 465 ARG F 298 REMARK 465 LYS F 299 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 218 CG CD CE NZ REMARK 470 GLU D 203 CG CD OE1 OE2 REMARK 470 GLU D 204 CG CD OE1 OE2 REMARK 470 LYS E 300 CG CD CE NZ REMARK 470 LYS E 314 CG CD CE NZ REMARK 470 GLU E 332 CG CD OE1 OE2 REMARK 470 LYS F 300 CG CD CE NZ REMARK 470 ARG F 309 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 314 CG CD CE NZ REMARK 470 GLU F 325 CG CD OE1 OE2 REMARK 470 GLU F 332 CG CD OE1 OE2 REMARK 470 HIS F 335 CG ND1 CD2 CE1 NE2 REMARK 470 LYS F 338 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 DC A 205 N2 DG B 218 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 202 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 250 48.67 -85.52 REMARK 500 ASP D 201 -40.23 95.44 REMARK 500 ASN D 250 38.66 -89.12 REMARK 500 GLU F 305 -73.39 -49.42 REMARK 500 THR F 306 -52.59 169.32 REMARK 500 LEU F 334 -73.76 -85.59 REMARK 500 HIS F 335 -28.54 151.47 REMARK 500 ASN F 356 -71.79 -91.43 REMARK 500 REMARK 500 REMARK: NULL DBREF 9DZM A 201 221 PDB 9DZM 9DZM 201 221 DBREF 9DZM B 201 222 PDB 9DZM 9DZM 201 222 DBREF 9DZM C 197 359 UNP P09086 PO2F2_HUMAN 195 357 DBREF 9DZM D 197 359 UNP P09086 PO2F2_HUMAN 195 357 DBREF 9DZM E 195 357 UNP P09086 PO2F2_HUMAN 195 357 DBREF 9DZM F 195 357 UNP P09086 PO2F2_HUMAN 195 357 SEQADV 9DZM GLY C 193 UNP P09086 EXPRESSION TAG SEQADV 9DZM SER C 194 UNP P09086 EXPRESSION TAG SEQADV 9DZM HIS C 195 UNP P09086 EXPRESSION TAG SEQADV 9DZM MET C 196 UNP P09086 EXPRESSION TAG SEQADV 9DZM GLY D 193 UNP P09086 EXPRESSION TAG SEQADV 9DZM SER D 194 UNP P09086 EXPRESSION TAG SEQADV 9DZM HIS D 195 UNP P09086 EXPRESSION TAG SEQADV 9DZM MET D 196 UNP P09086 EXPRESSION TAG SEQADV 9DZM GLY E 191 UNP P09086 EXPRESSION TAG SEQADV 9DZM SER E 192 UNP P09086 EXPRESSION TAG SEQADV 9DZM HIS E 193 UNP P09086 EXPRESSION TAG SEQADV 9DZM MET E 194 UNP P09086 EXPRESSION TAG SEQADV 9DZM GLY F 191 UNP P09086 EXPRESSION TAG SEQADV 9DZM SER F 192 UNP P09086 EXPRESSION TAG SEQADV 9DZM HIS F 193 UNP P09086 EXPRESSION TAG SEQADV 9DZM MET F 194 UNP P09086 EXPRESSION TAG SEQRES 1 A 21 DT DC DC DT DC DA DT DG DC DA DT DA DT SEQRES 2 A 21 DG DC DA DT DG DA DG DG SEQRES 1 B 22 DT DC DC DT DC DA DT DG DC DA DT DA DT SEQRES 2 B 22 DG DC DA DT DG DA DG DG DA SEQRES 1 C 167 GLY SER HIS MET GLU GLU PRO SER ASP LEU GLU GLU LEU SEQRES 2 C 167 GLU GLN PHE ALA ARG THR PHE LYS GLN ARG ARG ILE LYS SEQRES 3 C 167 LEU GLY PHE THR GLN GLY ASP VAL GLY LEU ALA MET GLY SEQRES 4 C 167 LYS LEU TYR GLY ASN ASP PHE SER GLN THR THR ILE SER SEQRES 5 C 167 ARG PHE GLU ALA LEU ASN LEU SER PHE LYS ASN MET CYS SEQRES 6 C 167 LYS LEU LYS PRO LEU LEU GLU LYS TRP LEU ASN ASP ALA SEQRES 7 C 167 GLU THR MET SER VAL ASP SER SER LEU PRO SER PRO ASN SEQRES 8 C 167 GLN LEU SER SER PRO SER LEU GLY PHE ASP GLY LEU PRO SEQRES 9 C 167 GLY ARG ARG ARG LYS LYS ARG THR SER ILE GLU THR ASN SEQRES 10 C 167 VAL ARG PHE ALA LEU GLU LYS SER PHE LEU ALA ASN GLN SEQRES 11 C 167 LYS PRO THR SER GLU GLU ILE LEU LEU ILE ALA GLU GLN SEQRES 12 C 167 LEU HIS MET GLU LYS GLU VAL ILE ARG VAL TRP PHE CYS SEQRES 13 C 167 ASN ARG ARG GLN LYS GLU LYS ARG ILE ASN PRO SEQRES 1 D 167 GLY SER HIS MET GLU GLU PRO SER ASP LEU GLU GLU LEU SEQRES 2 D 167 GLU GLN PHE ALA ARG THR PHE LYS GLN ARG ARG ILE LYS SEQRES 3 D 167 LEU GLY PHE THR GLN GLY ASP VAL GLY LEU ALA MET GLY SEQRES 4 D 167 LYS LEU TYR GLY ASN ASP PHE SER GLN THR THR ILE SER SEQRES 5 D 167 ARG PHE GLU ALA LEU ASN LEU SER PHE LYS ASN MET CYS SEQRES 6 D 167 LYS LEU LYS PRO LEU LEU GLU LYS TRP LEU ASN ASP ALA SEQRES 7 D 167 GLU THR MET SER VAL ASP SER SER LEU PRO SER PRO ASN SEQRES 8 D 167 GLN LEU SER SER PRO SER LEU GLY PHE ASP GLY LEU PRO SEQRES 9 D 167 GLY ARG ARG ARG LYS LYS ARG THR SER ILE GLU THR ASN SEQRES 10 D 167 VAL ARG PHE ALA LEU GLU LYS SER PHE LEU ALA ASN GLN SEQRES 11 D 167 LYS PRO THR SER GLU GLU ILE LEU LEU ILE ALA GLU GLN SEQRES 12 D 167 LEU HIS MET GLU LYS GLU VAL ILE ARG VAL TRP PHE CYS SEQRES 13 D 167 ASN ARG ARG GLN LYS GLU LYS ARG ILE ASN PRO SEQRES 1 E 167 GLY SER HIS MET GLU GLU PRO SER ASP LEU GLU GLU LEU SEQRES 2 E 167 GLU GLN PHE ALA ARG THR PHE LYS GLN ARG ARG ILE LYS SEQRES 3 E 167 LEU GLY PHE THR GLN GLY ASP VAL GLY LEU ALA MET GLY SEQRES 4 E 167 LYS LEU TYR GLY ASN ASP PHE SER GLN THR THR ILE SER SEQRES 5 E 167 ARG PHE GLU ALA LEU ASN LEU SER PHE LYS ASN MET CYS SEQRES 6 E 167 LYS LEU LYS PRO LEU LEU GLU LYS TRP LEU ASN ASP ALA SEQRES 7 E 167 GLU THR MET SER VAL ASP SER SER LEU PRO SER PRO ASN SEQRES 8 E 167 GLN LEU SER SER PRO SER LEU GLY PHE ASP GLY LEU PRO SEQRES 9 E 167 GLY ARG ARG ARG LYS LYS ARG THR SER ILE GLU THR ASN SEQRES 10 E 167 VAL ARG PHE ALA LEU GLU LYS SER PHE LEU ALA ASN GLN SEQRES 11 E 167 LYS PRO THR SER GLU GLU ILE LEU LEU ILE ALA GLU GLN SEQRES 12 E 167 LEU HIS MET GLU LYS GLU VAL ILE ARG VAL TRP PHE CYS SEQRES 13 E 167 ASN ARG ARG GLN LYS GLU LYS ARG ILE ASN PRO SEQRES 1 F 167 GLY SER HIS MET GLU GLU PRO SER ASP LEU GLU GLU LEU SEQRES 2 F 167 GLU GLN PHE ALA ARG THR PHE LYS GLN ARG ARG ILE LYS SEQRES 3 F 167 LEU GLY PHE THR GLN GLY ASP VAL GLY LEU ALA MET GLY SEQRES 4 F 167 LYS LEU TYR GLY ASN ASP PHE SER GLN THR THR ILE SER SEQRES 5 F 167 ARG PHE GLU ALA LEU ASN LEU SER PHE LYS ASN MET CYS SEQRES 6 F 167 LYS LEU LYS PRO LEU LEU GLU LYS TRP LEU ASN ASP ALA SEQRES 7 F 167 GLU THR MET SER VAL ASP SER SER LEU PRO SER PRO ASN SEQRES 8 F 167 GLN LEU SER SER PRO SER LEU GLY PHE ASP GLY LEU PRO SEQRES 9 F 167 GLY ARG ARG ARG LYS LYS ARG THR SER ILE GLU THR ASN SEQRES 10 F 167 VAL ARG PHE ALA LEU GLU LYS SER PHE LEU ALA ASN GLN SEQRES 11 F 167 LYS PRO THR SER GLU GLU ILE LEU LEU ILE ALA GLU GLN SEQRES 12 F 167 LEU HIS MET GLU LYS GLU VAL ILE ARG VAL TRP PHE CYS SEQRES 13 F 167 ASN ARG ARG GLN LYS GLU LYS ARG ILE ASN PRO HET BR E 401 1 HETNAM BR BROMIDE ION FORMUL 7 BR BR 1- FORMUL 8 HOH *34(H2 O) HELIX 1 AA1 GLU C 198 LEU C 219 1 22 HELIX 2 AA2 THR C 222 GLY C 235 1 14 HELIX 3 AA3 SER C 239 LEU C 249 1 11 HELIX 4 AA4 SER C 252 SER C 277 1 26 HELIX 5 AA5 ASP D 201 LEU D 219 1 19 HELIX 6 AA6 THR D 222 GLY D 235 1 14 HELIX 7 AA7 SER D 239 LEU D 249 1 11 HELIX 8 AA8 SER D 252 THR D 272 1 21 HELIX 9 AA9 GLU E 305 ASN E 319 1 15 HELIX 10 AB1 THR E 323 HIS E 335 1 13 HELIX 11 AB2 GLU E 337 LYS E 353 1 17 HELIX 12 AB3 THR F 306 ASN F 319 1 14 HELIX 13 AB4 THR F 323 HIS F 335 1 13 HELIX 14 AB5 GLU F 337 LYS F 353 1 17 CRYST1 38.029 54.922 69.164 82.37 79.66 71.77 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026296 -0.008661 -0.004103 0.00000 SCALE2 0.000000 0.019170 -0.001576 0.00000 SCALE3 0.000000 0.000000 0.014747 0.00000 TER 667 DG A 221 TER 1366 DA B 222 TER 2669 SER C 277 TER 3912 ASP D 276 TER 4878 PRO E 357 TER 5794 PRO F 357 HETATM 5795 BR BR E 401 -23.840 12.302 -16.578 1.00138.54 BR HETATM 5796 O HOH A 301 -9.682 -5.414 -3.382 1.00 39.30 O HETATM 5797 O HOH A 302 -12.608 2.375 -1.268 1.00 59.18 O HETATM 5798 O HOH A 303 -7.625 0.089 0.781 1.00 44.97 O HETATM 5799 O HOH A 304 2.163 -7.701 1.810 1.00 32.96 O HETATM 5800 O HOH A 305 4.724 -6.169 3.643 1.00 59.66 O HETATM 5801 O HOH A 306 -10.964 -2.065 -10.614 1.00 27.07 O HETATM 5802 O HOH B 301 -15.487 2.107 -21.840 1.00 43.77 O HETATM 5803 O HOH B 302 3.035 -1.582 -4.884 1.00 46.61 O HETATM 5804 O HOH B 303 2.812 -1.269 -0.325 1.00 24.80 O HETATM 5805 O HOH B 304 4.157 -9.622 -14.207 1.00 53.84 O HETATM 5806 O HOH B 305 0.375 -3.804 -15.429 1.00 44.85 O HETATM 5807 O HOH B 306 4.375 4.881 -2.428 1.00 28.83 O HETATM 5808 O HOH B 307 -5.521 4.993 13.900 1.00 73.80 O HETATM 5809 O HOH C 401 1.158 -4.912 -5.632 1.00 26.09 O HETATM 5810 O HOH C 402 1.431 -3.193 -3.228 1.00 45.42 O HETATM 5811 O HOH C 403 -9.235 -16.419 1.511 1.00 34.93 O HETATM 5812 O HOH C 404 -4.560 -11.115 -11.991 1.00 30.47 O HETATM 5813 O HOH C 405 -7.366 -10.697 0.284 1.00 36.77 O HETATM 5814 O HOH C 406 -4.212 -9.277 -9.947 1.00 26.54 O HETATM 5815 O HOH C 407 6.544 -8.472 2.179 1.00 40.00 O HETATM 5816 O HOH C 408 -9.392 -11.523 -13.385 1.00 43.06 O HETATM 5817 O HOH C 409 -8.251 -7.668 -2.728 1.00 29.02 O HETATM 5818 O HOH C 410 2.086 -13.740 8.434 1.00 56.78 O HETATM 5819 O HOH C 411 -11.374 -24.914 -10.860 1.00 56.84 O HETATM 5820 O HOH D 401 4.559 2.316 5.410 1.00 34.20 O HETATM 5821 O HOH D 402 -2.294 11.462 1.974 1.00 31.51 O HETATM 5822 O HOH D 403 4.025 0.902 2.629 1.00 37.76 O HETATM 5823 O HOH D 404 14.045 18.996 -10.933 1.00 48.36 O HETATM 5824 O HOH D 405 9.717 24.688 0.185 1.00 50.44 O HETATM 5825 O HOH D 406 1.436 11.558 14.786 1.00 38.89 O HETATM 5826 O HOH D 407 9.593 5.615 -9.493 1.00 56.35 O HETATM 5827 O HOH E 501 -11.856 6.804 -3.324 1.00 55.06 O HETATM 5828 O HOH E 502 -25.352 9.282 -18.563 1.00 76.95 O HETATM 5829 O HOH F 401 -15.804 15.471 21.218 1.00 58.11 O MASTER 665 0 1 14 0 0 0 6 3119 6 0 56 END