HEADER VIRAL PROTEIN 17-OCT-24 9DZS TITLE ACANTHAMOEBA POLYPHAGA MIMIVIRUS R699 COMPND MOL_ID: 1; COMPND 2 MOLECULE: R699; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACANTHAMOEBA POLYPHAGA MIMIVIRUS; SOURCE 3 ORGANISM_TAXID: 212035; SOURCE 4 GENE: MIMI_R699; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRAL PROTEIN, R699 EXPDTA X-RAY DIFFRACTION AUTHOR S.J.RICHARDS,C.BUHLHELLER,J.S.KIM,T.CHEN,J.WU,H.GUO REVDAT 2 24-DEC-25 9DZS 1 JRNL REVDAT 1 11-JUN-25 9DZS 0 JRNL AUTH J.S.KIM,Z.CHEN,S.A.ESPINOSA GARCIA,C.BUHLHELLER,B.ZHANG, JRNL AUTH 2 S.J.RICHARDS,T.CHEN,J.WU,R.C.BRUNTZ,M.E.GILLIAM,M.YAMAUCHI, JRNL AUTH 3 B.LIANG,H.GUO JRNL TITL STRUCTURAL BASIS OF COLLAGEN GLUCOSYLTRANSFERASE FUNCTION JRNL TITL 2 AND ITS SERENDIPITOUS ROLE IN KOJIBIOSE SYNTHESIS. JRNL REF NAT COMMUN V. 16 6704 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 40691173 JRNL DOI 10.1038/S41467-025-61973-X REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 50656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 2462 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3475 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 233 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3605 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 291 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.44000 REMARK 3 B22 (A**2) : -0.38700 REMARK 3 B33 (A**2) : -0.80800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.18800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.539 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3766 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5094 ; 1.695 ; 1.826 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 447 ; 6.877 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 15 ; 6.079 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 668 ;12.170 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 541 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2873 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1651 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2565 ; 0.318 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 245 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1767 ; 1.892 ; 1.815 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2209 ; 2.979 ; 3.254 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1999 ; 2.883 ; 2.079 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2881 ; 4.593 ; 3.677 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE NOT BEEN USED REMARK 4 REMARK 4 9DZS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1000287938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 3.8.0 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 349711 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 60.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.49100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.20.1, PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN/COFACTOR MIX: 12MG/ML R699, REMARK 280 10MM MNCL2, 10MM UDP GLUCOSE, 50% GLYCEROL. MOTHER LIQUOR: 0.18 REMARK 280 M AMMONIUM CHLORIDE, 18% (W/V) PEG 3350, 4% V/V 1-PROPANOL. THE REMARK 280 RATIO OF MIX AND MOTHER LIQUOR WAS AT 1:1., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.02050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.74050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.02050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.74050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 GLU A 2 REMARK 465 GLN A 3 REMARK 465 SER A 4 REMARK 465 ASN A 5 REMARK 465 ASN A 6 REMARK 465 ASP A 7 REMARK 465 ASP A 8 REMARK 465 ASN A 9 REMARK 465 GLU A 295 REMARK 465 GLN A 296 REMARK 465 ASN A 297 REMARK 465 ARG A 298 REMARK 465 LYS A 299 REMARK 465 LEU A 300 REMARK 465 ILE A 301 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 245 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 ASP A 250 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 ARG A 369 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 369 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 18 144.77 -171.30 REMARK 500 ASN A 209 60.28 60.84 REMARK 500 ASP A 352 -126.42 50.40 REMARK 500 ASN A 366 98.49 -173.68 REMARK 500 LYS A 424 -44.78 -131.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 405 GLY A 406 148.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 191 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 83 OD2 REMARK 620 2 ASP A 86 OD1 106.1 REMARK 620 3 ASP A 86 OD2 162.0 56.0 REMARK 620 4 HIS A 216 NE2 90.3 87.8 89.9 REMARK 620 5 UDP A 501 O2A 92.7 84.9 85.2 172.7 REMARK 620 6 UDP A 501 O2B 98.3 155.1 99.5 96.8 89.4 REMARK 620 N 1 2 3 4 5 DBREF 9DZS A 2 455 UNP Q5UNV6 YR699_MIMIV 2 455 SEQADV 9DZS GLY A -2 UNP Q5UNV6 EXPRESSION TAG SEQADV 9DZS PRO A -1 UNP Q5UNV6 EXPRESSION TAG SEQADV 9DZS GLY A 0 UNP Q5UNV6 EXPRESSION TAG SEQADV 9DZS SER A 1 UNP Q5UNV6 EXPRESSION TAG SEQRES 1 A 458 GLY PRO GLY SER GLU GLN SER ASN ASN ASP ASP ASN LEU SEQRES 2 A 458 LEU VAL LEU GLY ILE GLY ILE SER VAL HIS LYS THR ASP SEQRES 3 A 458 GLY VAL LEU ARG PHE GLU LYS TYR CYS GLN ALA HIS ASN SEQRES 4 A 458 LEU GLN TYR MET ILE VAL GLY GLU GLY LYS LYS TRP ASN SEQRES 5 A 458 GLY GLY ASN LEU GLU SER GLU ALA GLY GLY GLY GLN LYS SEQRES 6 A 458 ILE ASN GLU LEU LEU ILE ALA LEU GLU SER ILE LYS ASP SEQRES 7 A 458 ASN LYS LEU ILE VAL VAL CYS ASP THR TYR ASP LEU ILE SEQRES 8 A 458 PRO LEU SER GLY PRO GLU GLU ILE LEU ARG LYS TYR ARG SEQRES 9 A 458 PHE LEU THR PRO ASP ASN LYS VAL VAL PHE SER SER GLU SEQRES 10 A 458 LEU TYR CYS TRP PRO ASP ALA SER LEU VAL GLU ARG TYR SEQRES 11 A 458 PRO LYS VAL ASP THR LYS TYR LYS TYR LEU ASN SER GLY SEQRES 12 A 458 ALA PHE MET GLY TYR ARG ASP ASP ILE TYR GLU MET ILE SEQRES 13 A 458 LYS ASN GLY VAL LYS ASP ARG ASP ASP ASP GLN LEU PHE SEQRES 14 A 458 PHE SER ILE LYS PHE ILE GLU THR ASP LYS ILE VAL LEU SEQRES 15 A 458 ASP TYR LYS CYS GLU LEU PHE GLN ALA MET TYR ARG CYS SEQRES 16 A 458 ASN SER ASP LEU VAL VAL HIS LYS ASN ARG ILE PHE ASN SEQRES 17 A 458 GLY TYR THR ASN SER TYR PRO VAL PHE ALA HIS GLY ASN SEQRES 18 A 458 GLY PRO ALA LYS LYS LEU LEU ASN HIS MET GLU GLY TYR SEQRES 19 A 458 PHE MET THR GLU PRO ILE ASP GLY SER SER ASN THR ILE SEQRES 20 A 458 ASN THR PHE LYS LEU ASP ASN GLU PRO LYS VAL PHE PHE SEQRES 21 A 458 ALA LEU TYR VAL ASP SER ASN ASP LEU SER ALA LEU LYS SEQRES 22 A 458 GLN PHE LEU GLY LYS VAL ALA SER ILE GLN TYR GLY ASN SEQRES 23 A 458 LYS VAL ILE TYR LEU TYR ASP ARG SER ASP ASN GLU GLN SEQRES 24 A 458 ASN ARG LYS LEU ILE GLN ILE SER TYR PRO ASN TYR HIS SEQRES 25 A 458 THR GLY VAL THR LYS TYR VAL PHE ASP ASP PHE LYS LYS SEQRES 26 A 458 SER ASP ALA GLN PHE TYR PHE LEU LEU GLU GLN ASN CYS SEQRES 27 A 458 ILE ILE THR LYS LYS ASP ILE LEU HIS GLU LEU ILE MET SEQRES 28 A 458 GLN VAL LYS ASP ASN HIS ARG VAL ILE SER PRO MET ILE SEQRES 29 A 458 GLY TYR GLU GLN ASN SER THR ARG THR ASN PHE TRP GLY SEQRES 30 A 458 ASP ILE GLU ASP GLY TYR TYR LYS ARG SER GLU ASN TYR SEQRES 31 A 458 LEU ASP LEU ALA LYS HIS LYS VAL ARG GLY LEU TRP ASN SEQRES 32 A 458 VAL PRO TYR VAL TYR GLY VAL ILE LEU MET HIS GLU SER SEQRES 33 A 458 VAL VAL ARG ASN TRP ASP LEU SER MET VAL LYS TYR ASN SEQRES 34 A 458 ASP LYS ASP MET ASP LEU CYS PHE SER LEU ARG LYS HIS SEQRES 35 A 458 THR ILE PHE MET TYR MET ILE ASN ASN ASN ASN TYR GLY SEQRES 36 A 458 TYR MET VAL HET UDP A 501 25 HET MN A 502 1 HET GOL A 503 6 HET GOL A 504 6 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 UDP C9 H14 N2 O12 P2 FORMUL 3 MN MN 2+ FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *291(H2 O) HELIX 1 AA1 THR A 22 HIS A 35 1 14 HELIX 2 AA2 GLY A 59 GLU A 71 1 13 HELIX 3 AA3 GLY A 92 THR A 104 1 13 HELIX 4 AA4 ASP A 120 TYR A 127 5 8 HELIX 5 AA5 ARG A 146 LYS A 154 1 9 HELIX 6 AA6 ASP A 162 THR A 174 1 13 HELIX 7 AA7 CYS A 192 SER A 194 5 3 HELIX 8 AA8 ASN A 218 PRO A 220 5 3 HELIX 9 AA9 ALA A 221 GLY A 230 1 10 HELIX 10 AB1 ASP A 265 SER A 278 1 14 HELIX 11 AB2 PHE A 317 SER A 323 1 7 HELIX 12 AB3 ASP A 341 MET A 348 1 8 HELIX 13 AB4 ASN A 386 LYS A 392 1 7 HELIX 14 AB5 GLU A 412 ARG A 416 1 5 HELIX 15 AB6 ASP A 427 HIS A 439 1 13 SHEET 1 AA1 6 TYR A 39 GLU A 44 0 SHEET 2 AA1 6 LEU A 11 SER A 18 1 N GLY A 14 O VAL A 42 SHEET 3 AA1 6 LEU A 78 ASP A 83 1 O VAL A 80 N LEU A 13 SHEET 4 AA1 6 TYR A 136 TYR A 145 -1 O GLY A 144 N ILE A 79 SHEET 5 AA1 6 VAL A 109 GLU A 114 -1 N VAL A 110 O MET A 143 SHEET 6 AA1 6 ILE A 177 ASP A 180 1 O VAL A 178 N PHE A 111 SHEET 1 AA2 3 LEU A 87 PRO A 89 0 SHEET 2 AA2 3 PHE A 214 HIS A 216 -1 O ALA A 215 N ILE A 88 SHEET 3 AA2 3 PHE A 186 ALA A 188 1 N GLN A 187 O PHE A 214 SHEET 1 AA3 2 LEU A 196 HIS A 199 0 SHEET 2 AA3 2 ARG A 202 ASN A 205 -1 O ARG A 202 N HIS A 199 SHEET 1 AA4 8 TYR A 308 HIS A 309 0 SHEET 2 AA4 8 LYS A 284 ASP A 290 1 N ASP A 290 O HIS A 309 SHEET 3 AA4 8 VAL A 255 VAL A 261 1 N PHE A 257 O VAL A 285 SHEET 4 AA4 8 PHE A 327 GLU A 332 1 O PHE A 329 N PHE A 256 SHEET 5 AA4 8 VAL A 407 HIS A 411 -1 O ILE A 408 N LEU A 330 SHEET 6 AA4 8 VAL A 356 PRO A 359 -1 N ILE A 357 O LEU A 409 SHEET 7 AA4 8 MET A 443 ILE A 446 1 O TYR A 444 N VAL A 356 SHEET 8 AA4 8 LEU A 398 VAL A 401 -1 N VAL A 401 O MET A 443 SHEET 1 AA5 4 CYS A 335 ILE A 337 0 SHEET 2 AA5 4 GLY A 452 MET A 454 -1 O TYR A 453 N ILE A 336 SHEET 3 AA5 4 GLY A 362 TYR A 363 1 N GLY A 362 O MET A 454 SHEET 4 AA5 4 ASN A 366 THR A 370 -1 O ARG A 369 N TYR A 363 SHEET 1 AA6 2 PHE A 372 TRP A 373 0 SHEET 2 AA6 2 TYR A 403 VAL A 404 -1 O TYR A 403 N TRP A 373 SHEET 1 AA7 2 ASP A 375 GLU A 377 0 SHEET 2 AA7 2 TYR A 380 LYS A 382 -1 O TYR A 380 N GLU A 377 LINK OD2 ASP A 83 MN MN A 502 1555 1555 2.18 LINK OD1 ASP A 86 MN MN A 502 1555 1555 2.40 LINK OD2 ASP A 86 MN MN A 502 1555 1555 2.23 LINK NE2 HIS A 216 MN MN A 502 1555 1555 2.24 LINK O2A UDP A 501 MN MN A 502 1555 1555 2.18 LINK O2B UDP A 501 MN MN A 502 1555 1555 2.13 CISPEP 1 TRP A 118 PRO A 119 0 1.25 CRYST1 118.041 71.481 72.626 90.00 123.18 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008472 0.000000 0.005539 0.00000 SCALE2 0.000000 0.013990 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016451 0.00000 CONECT 566 3665 CONECT 592 3665 CONECT 593 3665 CONECT 1688 3665 CONECT 3640 3641 3645 3648 CONECT 3641 3640 3642 3646 CONECT 3642 3641 3643 CONECT 3643 3642 3644 3647 CONECT 3644 3643 3645 CONECT 3645 3640 3644 CONECT 3646 3641 CONECT 3647 3643 CONECT 3648 3640 3649 3653 CONECT 3649 3648 3650 3651 CONECT 3650 3649 CONECT 3651 3649 3652 3654 CONECT 3652 3651 3653 3655 CONECT 3653 3648 3652 CONECT 3654 3651 CONECT 3655 3652 3656 CONECT 3656 3655 3657 CONECT 3657 3656 3658 3659 3660 CONECT 3658 3657 CONECT 3659 3657 3665 CONECT 3660 3657 3661 CONECT 3661 3660 3662 3663 3664 CONECT 3662 3661 CONECT 3663 3661 3665 CONECT 3664 3661 CONECT 3665 566 592 593 1688 CONECT 3665 3659 3663 CONECT 3666 3667 3668 CONECT 3667 3666 CONECT 3668 3666 3669 3670 CONECT 3669 3668 CONECT 3670 3668 3671 CONECT 3671 3670 CONECT 3672 3673 3674 CONECT 3673 3672 CONECT 3674 3672 3675 3676 CONECT 3675 3674 CONECT 3676 3674 3677 CONECT 3677 3676 MASTER 349 0 4 15 27 0 0 6 3934 1 43 36 END