HEADER IMMUNE SYSTEM 19-OCT-24 9E0V TITLE GSDMD BOUND TO A PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE/MALTODEXTRIN-BINDING PERIPLASMIC PROTEIN, COMPND 3 GASDERMIN-D, C-TERMINAL CHIMERA; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: MBP + GSD (UNP RESIDUES 276-484); COMPND 6 SYNONYM: MMBP,MALTODEXTRIN-BINDING PROTEIN,MALTOSE-BINDING PROTEIN, COMPND 7 MBP,GSDMD-CT,HGSDMD-CTD; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: GLY-CYS-ILE-LYS-LYS-ALA-VAL-6CW-PHE-LYS-CYS; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MALE, B4034, JW3994, GSDMD, DFNA5L, GSDMDC1, FKSG10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS GSDMD, CASPASE, EXOSITE, PYROPTOSIS, CYCLIC PEPTIDE, DRUGGABILITY, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR R.WANG REVDAT 2 11-FEB-26 9E0V 1 REMARK REVDAT 1 22-OCT-25 9E0V 0 JRNL AUTH R.WANG JRNL TITL PEPTIDE BINDING AT THE GASDERMIN D EXOSITE REVEALS JRNL TITL 2 STRUCTURAL BASIS FOR TARGETING THE SITE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.8 (10-JUL-2024) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 25817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1268 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 51 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.65 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.33 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 517 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2845 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 492 REMARK 3 BIN R VALUE (WORKING SET) : 0.2816 REMARK 3 BIN FREE R VALUE : 0.3456 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.84 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1615 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24040 REMARK 3 B22 (A**2) : -0.24040 REMARK 3 B33 (A**2) : 0.48070 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.230 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.111 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.098 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.104 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.093 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1647 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2241 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 567 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 278 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1647 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 205 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1707 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.27 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.77 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9E0V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1000289246. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 103.15 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28835 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.629 REMARK 200 RESOLUTION RANGE LOW (A) : 48.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.3 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.5, 1.25 M SODIUM REMARK 280 CITRATE DIHYDRATE, 20 MM TCEP, VAPOR DIFFUSION, TEMPERATURE REMARK 280 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.35850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 23.78750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 23.78750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 146.03775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 23.78750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 23.78750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.67925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 23.78750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 23.78750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 146.03775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 23.78750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 23.78750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.67925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 97.35850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -105 REMARK 465 ALA A -104 REMARK 465 HIS A -103 REMARK 465 HIS A -102 REMARK 465 HIS A -101 REMARK 465 HIS A -100 REMARK 465 HIS A -99 REMARK 465 HIS A -98 REMARK 465 LYS A -97 REMARK 465 THR A -96 REMARK 465 GLU A -95 REMARK 465 GLU A -94 REMARK 465 GLY A -93 REMARK 465 LYS A -92 REMARK 465 LEU A -91 REMARK 465 VAL A -90 REMARK 465 ILE A -89 REMARK 465 TRP A -88 REMARK 465 ILE A -87 REMARK 465 ASN A -86 REMARK 465 GLY A -85 REMARK 465 ASP A -84 REMARK 465 LYS A -83 REMARK 465 GLY A -82 REMARK 465 TYR A -81 REMARK 465 ASN A -80 REMARK 465 GLY A -79 REMARK 465 LEU A -78 REMARK 465 ALA A -77 REMARK 465 GLU A -76 REMARK 465 VAL A -75 REMARK 465 GLY A -74 REMARK 465 LYS A -73 REMARK 465 LYS A -72 REMARK 465 PHE A -71 REMARK 465 GLU A -70 REMARK 465 LYS A -69 REMARK 465 ASP A -68 REMARK 465 THR A -67 REMARK 465 GLY A -66 REMARK 465 ILE A -65 REMARK 465 LYS A -64 REMARK 465 VAL A -63 REMARK 465 THR A -62 REMARK 465 VAL A -61 REMARK 465 GLU A -60 REMARK 465 HIS A -59 REMARK 465 PRO A -58 REMARK 465 ASP A -57 REMARK 465 LYS A -56 REMARK 465 LEU A -55 REMARK 465 GLU A -54 REMARK 465 GLU A -53 REMARK 465 LYS A -52 REMARK 465 PHE A -51 REMARK 465 PRO A -50 REMARK 465 GLN A -49 REMARK 465 VAL A -48 REMARK 465 ALA A -47 REMARK 465 ALA A -46 REMARK 465 THR A -45 REMARK 465 GLY A -44 REMARK 465 ASP A -43 REMARK 465 GLY A -42 REMARK 465 PRO A -41 REMARK 465 ASP A -40 REMARK 465 ILE A -39 REMARK 465 ILE A -38 REMARK 465 PHE A -37 REMARK 465 TRP A -36 REMARK 465 ALA A -35 REMARK 465 HIS A -34 REMARK 465 ASP A -33 REMARK 465 ARG A -32 REMARK 465 PHE A -31 REMARK 465 GLY A -30 REMARK 465 GLY A -29 REMARK 465 TYR A -28 REMARK 465 ALA A -27 REMARK 465 GLN A -26 REMARK 465 SER A -25 REMARK 465 GLY A -24 REMARK 465 LEU A -23 REMARK 465 LEU A -22 REMARK 465 ALA A -21 REMARK 465 GLU A -20 REMARK 465 ILE A -19 REMARK 465 THR A -18 REMARK 465 PRO A -17 REMARK 465 ALA A -16 REMARK 465 ALA A -15 REMARK 465 ALA A -14 REMARK 465 PHE A -13 REMARK 465 GLN A -12 REMARK 465 ASP A -11 REMARK 465 LYS A -10 REMARK 465 LEU A -9 REMARK 465 TYR A -8 REMARK 465 PRO A -7 REMARK 465 PHE A -6 REMARK 465 THR A -5 REMARK 465 TRP A -4 REMARK 465 ASP A -3 REMARK 465 ALA A -2 REMARK 465 VAL A -1 REMARK 465 ARG A 0 REMARK 465 TYR A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 4 REMARK 465 LEU A 5 REMARK 465 ILE A 6 REMARK 465 ALA A 7 REMARK 465 TYR A 8 REMARK 465 PRO A 9 REMARK 465 ILE A 10 REMARK 465 ALA A 11 REMARK 465 VAL A 12 REMARK 465 GLU A 13 REMARK 465 ALA A 14 REMARK 465 LEU A 15 REMARK 465 SER A 16 REMARK 465 LEU A 17 REMARK 465 ILE A 18 REMARK 465 TYR A 19 REMARK 465 ASN A 20 REMARK 465 LYS A 21 REMARK 465 ASP A 22 REMARK 465 LEU A 23 REMARK 465 LEU A 24 REMARK 465 PRO A 25 REMARK 465 ASN A 26 REMARK 465 PRO A 27 REMARK 465 PRO A 28 REMARK 465 LYS A 29 REMARK 465 THR A 30 REMARK 465 TRP A 31 REMARK 465 GLU A 32 REMARK 465 GLU A 33 REMARK 465 ILE A 34 REMARK 465 PRO A 35 REMARK 465 ALA A 36 REMARK 465 LEU A 37 REMARK 465 ASP A 38 REMARK 465 LYS A 39 REMARK 465 GLU A 40 REMARK 465 LEU A 41 REMARK 465 LYS A 42 REMARK 465 ALA A 43 REMARK 465 LYS A 44 REMARK 465 GLY A 45 REMARK 465 LYS A 46 REMARK 465 SER A 47 REMARK 465 ALA A 48 REMARK 465 LEU A 49 REMARK 465 MET A 50 REMARK 465 PHE A 51 REMARK 465 ASN A 52 REMARK 465 LEU A 53 REMARK 465 GLN A 54 REMARK 465 GLU A 55 REMARK 465 PRO A 56 REMARK 465 TYR A 57 REMARK 465 PHE A 58 REMARK 465 THR A 59 REMARK 465 TRP A 60 REMARK 465 PRO A 61 REMARK 465 LEU A 62 REMARK 465 ILE A 63 REMARK 465 ALA A 64 REMARK 465 ALA A 65 REMARK 465 ASP A 66 REMARK 465 GLY A 67 REMARK 465 GLY A 68 REMARK 465 TYR A 69 REMARK 465 ALA A 70 REMARK 465 PHE A 71 REMARK 465 LYS A 72 REMARK 465 TYR A 73 REMARK 465 ALA A 74 REMARK 465 ALA A 75 REMARK 465 GLY A 76 REMARK 465 LYS A 77 REMARK 465 TYR A 78 REMARK 465 ASP A 79 REMARK 465 ILE A 80 REMARK 465 LYS A 81 REMARK 465 ASP A 82 REMARK 465 VAL A 83 REMARK 465 GLY A 84 REMARK 465 VAL A 85 REMARK 465 ASP A 86 REMARK 465 ASN A 87 REMARK 465 ALA A 88 REMARK 465 GLY A 89 REMARK 465 ALA A 90 REMARK 465 LYS A 91 REMARK 465 ALA A 92 REMARK 465 GLY A 93 REMARK 465 LEU A 94 REMARK 465 THR A 95 REMARK 465 PHE A 96 REMARK 465 LEU A 97 REMARK 465 VAL A 98 REMARK 465 ASP A 99 REMARK 465 LEU A 100 REMARK 465 ILE A 101 REMARK 465 LYS A 102 REMARK 465 ASN A 103 REMARK 465 LYS A 104 REMARK 465 HIS A 105 REMARK 465 MET A 106 REMARK 465 ASN A 107 REMARK 465 ALA A 108 REMARK 465 ASP A 109 REMARK 465 THR A 110 REMARK 465 ASP A 111 REMARK 465 TYR A 112 REMARK 465 SER A 113 REMARK 465 ILE A 114 REMARK 465 ALA A 115 REMARK 465 GLU A 116 REMARK 465 HIS A 117 REMARK 465 ALA A 118 REMARK 465 PHE A 119 REMARK 465 ASN A 120 REMARK 465 HIS A 121 REMARK 465 GLY A 122 REMARK 465 GLU A 123 REMARK 465 THR A 124 REMARK 465 ALA A 125 REMARK 465 MET A 126 REMARK 465 THR A 127 REMARK 465 ILE A 128 REMARK 465 ASN A 129 REMARK 465 GLY A 130 REMARK 465 PRO A 131 REMARK 465 TRP A 132 REMARK 465 ALA A 133 REMARK 465 TRP A 134 REMARK 465 SER A 135 REMARK 465 ASN A 136 REMARK 465 ILE A 137 REMARK 465 ASP A 138 REMARK 465 THR A 139 REMARK 465 SER A 140 REMARK 465 ALA A 141 REMARK 465 VAL A 142 REMARK 465 ASN A 143 REMARK 465 TYR A 144 REMARK 465 GLY A 145 REMARK 465 VAL A 146 REMARK 465 THR A 147 REMARK 465 VAL A 148 REMARK 465 LEU A 149 REMARK 465 PRO A 150 REMARK 465 THR A 151 REMARK 465 PHE A 152 REMARK 465 LYS A 153 REMARK 465 GLY A 154 REMARK 465 GLN A 155 REMARK 465 PRO A 156 REMARK 465 SER A 157 REMARK 465 LYS A 158 REMARK 465 PRO A 159 REMARK 465 PHE A 160 REMARK 465 VAL A 161 REMARK 465 GLY A 162 REMARK 465 VAL A 163 REMARK 465 LEU A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLY A 167 REMARK 465 ILE A 168 REMARK 465 ASN A 169 REMARK 465 ALA A 170 REMARK 465 ALA A 171 REMARK 465 SER A 172 REMARK 465 PRO A 173 REMARK 465 ASN A 174 REMARK 465 LYS A 175 REMARK 465 GLU A 176 REMARK 465 LEU A 177 REMARK 465 ALA A 178 REMARK 465 LYS A 179 REMARK 465 GLU A 180 REMARK 465 PHE A 181 REMARK 465 LEU A 182 REMARK 465 GLU A 183 REMARK 465 ASN A 184 REMARK 465 TYR A 185 REMARK 465 LEU A 186 REMARK 465 LEU A 187 REMARK 465 THR A 188 REMARK 465 ASP A 189 REMARK 465 GLU A 190 REMARK 465 GLY A 191 REMARK 465 LEU A 192 REMARK 465 GLU A 193 REMARK 465 ALA A 194 REMARK 465 VAL A 195 REMARK 465 ASN A 196 REMARK 465 LYS A 197 REMARK 465 ASP A 198 REMARK 465 LYS A 199 REMARK 465 PRO A 200 REMARK 465 LEU A 201 REMARK 465 GLY A 202 REMARK 465 ALA A 203 REMARK 465 VAL A 204 REMARK 465 ALA A 205 REMARK 465 LEU A 206 REMARK 465 LYS A 207 REMARK 465 SER A 208 REMARK 465 TYR A 209 REMARK 465 GLU A 210 REMARK 465 GLU A 211 REMARK 465 GLU A 212 REMARK 465 LEU A 213 REMARK 465 VAL A 214 REMARK 465 LYS A 215 REMARK 465 ASP A 216 REMARK 465 PRO A 217 REMARK 465 ARG A 218 REMARK 465 VAL A 219 REMARK 465 ALA A 220 REMARK 465 ALA A 221 REMARK 465 THR A 222 REMARK 465 MET A 223 REMARK 465 GLU A 224 REMARK 465 ASN A 225 REMARK 465 ALA A 226 REMARK 465 GLN A 227 REMARK 465 LYS A 228 REMARK 465 GLY A 229 REMARK 465 GLU A 230 REMARK 465 ILE A 231 REMARK 465 MET A 232 REMARK 465 PRO A 233 REMARK 465 ASN A 234 REMARK 465 ILE A 235 REMARK 465 PRO A 236 REMARK 465 GLN A 237 REMARK 465 MET A 238 REMARK 465 SER A 239 REMARK 465 ALA A 240 REMARK 465 PHE A 241 REMARK 465 TRP A 242 REMARK 465 TYR A 243 REMARK 465 ALA A 244 REMARK 465 VAL A 245 REMARK 465 ARG A 246 REMARK 465 THR A 247 REMARK 465 ALA A 248 REMARK 465 VAL A 249 REMARK 465 ILE A 250 REMARK 465 ASN A 251 REMARK 465 ALA A 252 REMARK 465 ALA A 253 REMARK 465 SER A 254 REMARK 465 GLY A 255 REMARK 465 ARG A 256 REMARK 465 GLN A 257 REMARK 465 THR A 258 REMARK 465 VAL A 259 REMARK 465 ASP A 260 REMARK 465 ALA A 261 REMARK 465 ALA A 262 REMARK 465 LEU A 263 REMARK 465 ALA A 264 REMARK 465 ALA A 265 REMARK 465 ALA A 266 REMARK 465 GLN A 267 REMARK 465 THR A 268 REMARK 465 GLU A 269 REMARK 465 ASN A 270 REMARK 465 LEU A 271 REMARK 465 TYR A 272 REMARK 465 PHE A 273 REMARK 465 GLN A 274 REMARK 465 GLY A 275 REMARK 465 GLY A 276 REMARK 465 VAL A 277 REMARK 465 GLU A 482 REMARK 465 PRO A 483 REMARK 465 HIS A 484 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 397 68.79 -115.99 REMARK 500 REMARK 500 REMARK: NULL DBREF 9E0V A -95 268 UNP P0AEX9 MALE_ECOLI 29 392 DBREF 9E0V A 276 484 UNP P57764 GSDMD_HUMAN 276 484 DBREF 9E0V B 1 11 PDB 9E0V 9E0V 1 11 SEQADV 9E0V MET A -105 UNP P0AEX9 EXPRESSION TAG SEQADV 9E0V ALA A -104 UNP P0AEX9 EXPRESSION TAG SEQADV 9E0V HIS A -103 UNP P0AEX9 EXPRESSION TAG SEQADV 9E0V HIS A -102 UNP P0AEX9 EXPRESSION TAG SEQADV 9E0V HIS A -101 UNP P0AEX9 EXPRESSION TAG SEQADV 9E0V HIS A -100 UNP P0AEX9 EXPRESSION TAG SEQADV 9E0V HIS A -99 UNP P0AEX9 EXPRESSION TAG SEQADV 9E0V HIS A -98 UNP P0AEX9 EXPRESSION TAG SEQADV 9E0V LYS A -97 UNP P0AEX9 EXPRESSION TAG SEQADV 9E0V THR A -96 UNP P0AEX9 EXPRESSION TAG SEQADV 9E0V ALA A -16 UNP P0AEX9 ASP 108 CONFLICT SEQADV 9E0V ALA A -15 UNP P0AEX9 LYS 109 CONFLICT SEQADV 9E0V ALA A 74 UNP P0AEX9 GLU 198 CONFLICT SEQADV 9E0V ALA A 75 UNP P0AEX9 ASN 199 CONFLICT SEQADV 9E0V HIS A 117 UNP P0AEX9 ALA 241 CONFLICT SEQADV 9E0V HIS A 121 UNP P0AEX9 LYS 245 CONFLICT SEQADV 9E0V ALA A 141 UNP P0AEX9 LYS 265 CONFLICT SEQADV 9E0V VAL A 214 UNP P0AEX9 ALA 338 CONFLICT SEQADV 9E0V VAL A 219 UNP P0AEX9 ILE 343 CONFLICT SEQADV 9E0V ALA A 261 UNP P0AEX9 GLU 385 CONFLICT SEQADV 9E0V ALA A 264 UNP P0AEX9 LYS 388 CONFLICT SEQADV 9E0V ALA A 265 UNP P0AEX9 ASP 389 CONFLICT SEQADV 9E0V GLU A 269 UNP P0AEX9 LINKER SEQADV 9E0V ASN A 270 UNP P0AEX9 LINKER SEQADV 9E0V LEU A 271 UNP P0AEX9 LINKER SEQADV 9E0V TYR A 272 UNP P0AEX9 LINKER SEQADV 9E0V PHE A 273 UNP P0AEX9 LINKER SEQADV 9E0V GLN A 274 UNP P0AEX9 LINKER SEQADV 9E0V GLY A 275 UNP P0AEX9 LINKER SEQRES 1 A 590 MET ALA HIS HIS HIS HIS HIS HIS LYS THR GLU GLU GLY SEQRES 2 A 590 LYS LEU VAL ILE TRP ILE ASN GLY ASP LYS GLY TYR ASN SEQRES 3 A 590 GLY LEU ALA GLU VAL GLY LYS LYS PHE GLU LYS ASP THR SEQRES 4 A 590 GLY ILE LYS VAL THR VAL GLU HIS PRO ASP LYS LEU GLU SEQRES 5 A 590 GLU LYS PHE PRO GLN VAL ALA ALA THR GLY ASP GLY PRO SEQRES 6 A 590 ASP ILE ILE PHE TRP ALA HIS ASP ARG PHE GLY GLY TYR SEQRES 7 A 590 ALA GLN SER GLY LEU LEU ALA GLU ILE THR PRO ALA ALA SEQRES 8 A 590 ALA PHE GLN ASP LYS LEU TYR PRO PHE THR TRP ASP ALA SEQRES 9 A 590 VAL ARG TYR ASN GLY LYS LEU ILE ALA TYR PRO ILE ALA SEQRES 10 A 590 VAL GLU ALA LEU SER LEU ILE TYR ASN LYS ASP LEU LEU SEQRES 11 A 590 PRO ASN PRO PRO LYS THR TRP GLU GLU ILE PRO ALA LEU SEQRES 12 A 590 ASP LYS GLU LEU LYS ALA LYS GLY LYS SER ALA LEU MET SEQRES 13 A 590 PHE ASN LEU GLN GLU PRO TYR PHE THR TRP PRO LEU ILE SEQRES 14 A 590 ALA ALA ASP GLY GLY TYR ALA PHE LYS TYR ALA ALA GLY SEQRES 15 A 590 LYS TYR ASP ILE LYS ASP VAL GLY VAL ASP ASN ALA GLY SEQRES 16 A 590 ALA LYS ALA GLY LEU THR PHE LEU VAL ASP LEU ILE LYS SEQRES 17 A 590 ASN LYS HIS MET ASN ALA ASP THR ASP TYR SER ILE ALA SEQRES 18 A 590 GLU HIS ALA PHE ASN HIS GLY GLU THR ALA MET THR ILE SEQRES 19 A 590 ASN GLY PRO TRP ALA TRP SER ASN ILE ASP THR SER ALA SEQRES 20 A 590 VAL ASN TYR GLY VAL THR VAL LEU PRO THR PHE LYS GLY SEQRES 21 A 590 GLN PRO SER LYS PRO PHE VAL GLY VAL LEU SER ALA GLY SEQRES 22 A 590 ILE ASN ALA ALA SER PRO ASN LYS GLU LEU ALA LYS GLU SEQRES 23 A 590 PHE LEU GLU ASN TYR LEU LEU THR ASP GLU GLY LEU GLU SEQRES 24 A 590 ALA VAL ASN LYS ASP LYS PRO LEU GLY ALA VAL ALA LEU SEQRES 25 A 590 LYS SER TYR GLU GLU GLU LEU VAL LYS ASP PRO ARG VAL SEQRES 26 A 590 ALA ALA THR MET GLU ASN ALA GLN LYS GLY GLU ILE MET SEQRES 27 A 590 PRO ASN ILE PRO GLN MET SER ALA PHE TRP TYR ALA VAL SEQRES 28 A 590 ARG THR ALA VAL ILE ASN ALA ALA SER GLY ARG GLN THR SEQRES 29 A 590 VAL ASP ALA ALA LEU ALA ALA ALA GLN THR GLU ASN LEU SEQRES 30 A 590 TYR PHE GLN GLY GLY VAL PRO ALA GLU GLY ALA PHE THR SEQRES 31 A 590 GLU ASP PHE GLN GLY LEU ARG ALA GLU VAL GLU THR ILE SEQRES 32 A 590 SER LYS GLU LEU GLU LEU LEU ASP ARG GLU LEU CYS GLN SEQRES 33 A 590 LEU LEU LEU GLU GLY LEU GLU GLY VAL LEU ARG ASP GLN SEQRES 34 A 590 LEU ALA LEU ARG ALA LEU GLU GLU ALA LEU GLU GLN GLY SEQRES 35 A 590 GLN SER LEU GLY PRO VAL GLU PRO LEU ASP GLY PRO ALA SEQRES 36 A 590 GLY ALA VAL LEU GLU CYS LEU VAL LEU SER SER GLY MET SEQRES 37 A 590 LEU VAL PRO GLU LEU ALA ILE PRO VAL VAL TYR LEU LEU SEQRES 38 A 590 GLY ALA LEU THR MET LEU SER GLU THR GLN HIS LYS LEU SEQRES 39 A 590 LEU ALA GLU ALA LEU GLU SER GLN THR LEU LEU GLY PRO SEQRES 40 A 590 LEU GLU LEU VAL GLY SER LEU LEU GLU GLN SER ALA PRO SEQRES 41 A 590 TRP GLN GLU ARG SER THR MET SER LEU PRO PRO GLY LEU SEQRES 42 A 590 LEU GLY ASN SER TRP GLY GLU GLY ALA PRO ALA TRP VAL SEQRES 43 A 590 LEU LEU ASP GLU CYS GLY LEU GLU LEU GLY GLU ASP THR SEQRES 44 A 590 PRO HIS VAL CYS TRP GLU PRO GLN ALA GLN GLY ARG MET SEQRES 45 A 590 CYS ALA LEU TYR ALA SER LEU ALA LEU LEU SER GLY LEU SEQRES 46 A 590 SER GLN GLU PRO HIS SEQRES 1 B 11 GLY CYS ILE LYS LYS ALA VAL 6CW PHE LYS CYS HET 6CW B 8 15 HETNAM 6CW 6-CHLORO-L-TRYPTOPHAN FORMUL 2 6CW C11 H11 CL N2 O2 FORMUL 3 HOH *141(H2 O) HELIX 1 AA1 ASP A 286 LYS A 299 1 14 HELIX 2 AA2 ASP A 305 ARG A 321 1 17 HELIX 3 AA3 ASP A 322 GLU A 334 1 13 HELIX 4 AA4 GLN A 335 GLN A 337 5 3 HELIX 5 AA5 ASP A 346 CYS A 355 1 10 HELIX 6 AA6 VAL A 364 THR A 379 1 16 HELIX 7 AA7 SER A 382 SER A 395 1 14 HELIX 8 AA8 LEU A 398 SER A 412 1 15 HELIX 9 AA9 PRO A 424 GLY A 429 5 6 HELIX 10 AB1 ALA A 436 GLU A 444 1 9 HELIX 11 AB2 GLU A 459 GLN A 461 5 3 HELIX 12 AB3 ALA A 462 SER A 480 1 19 SHEET 1 AA1 2 LEU A 303 LEU A 304 0 SHEET 2 AA1 2 VAL B 7 6CW B 8 1 O 6CW B 8 N LEU A 303 SHEET 1 AA2 3 SER A 419 MET A 421 0 SHEET 2 AA2 3 VAL A 456 TRP A 458 -1 O TRP A 458 N SER A 419 SHEET 3 AA2 3 GLU A 448 LEU A 449 -1 N GLU A 448 O CYS A 457 LINK C VAL B 7 N 6CW B 8 1555 1555 1.33 LINK C 6CW B 8 N PHE B 9 1555 1555 1.34 CISPEP 1 ALA A 413 PRO A 414 0 -2.09 CISPEP 2 THR A 453 PRO A 454 0 -0.19 CRYST1 47.575 47.575 194.717 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021019 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021019 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005136 0.00000 CONECT 1574 1579 CONECT 1579 1574 1580 CONECT 1580 1579 1581 1592 CONECT 1581 1580 1582 CONECT 1582 1581 1583 1587 CONECT 1583 1582 1584 1585 CONECT 1584 1583 1591 CONECT 1585 1583 1586 1588 CONECT 1586 1585 1587 CONECT 1587 1582 1586 CONECT 1588 1585 1589 CONECT 1589 1588 1590 1591 CONECT 1590 1589 CONECT 1591 1584 1589 CONECT 1592 1580 1593 1594 CONECT 1593 1592 CONECT 1594 1592 MASTER 644 0 1 12 5 0 0 6 1756 2 17 47 END