HEADER VIRAL PROTEIN 27-OCT-24 9E55 TITLE CRYSTAL STRUCTURE OF THE A/VIET NAM/1203/2004(H5N1) INFLUENZA VIRUS TITLE 2 HEMAGGLUTININ IN COMPLEX WITH CYCLIC PEPTIDE IHA-100 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ HA1 SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMAGGLUTININ HA2 SUBUNIT; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: IHA-100 PEPTIDE; COMPND 11 CHAIN: P; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 STRAIN: A/VIET NAM/1203/2004(H5N1); SOURCE 5 GENE: HA; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 10 ORGANISM_TAXID: 11320; SOURCE 11 STRAIN: A/VIET NAM/1203/2004(H5N1); SOURCE 12 GENE: HA; SOURCE 13 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606 KEYWDS CYCLIC PEPTIDE COMPLEX, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.K.Y.NGUYEN,I.A.WILSON REVDAT 1 08-OCT-25 9E55 0 JRNL AUTH T.K.Y.NGUYEN,I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF THE A/VIET NAM/1203/2004(H5N1) JRNL TITL 2 INFLUENZA VIRUS HEMAGGLUTININ IN COMPLEX WITH CYCLIC PEPTIDE JRNL TITL 3 IHA-100 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 13932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.276 REMARK 3 R VALUE (WORKING SET) : 0.274 REMARK 3 FREE R VALUE : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2400 - 4.9400 0.99 2913 164 0.2512 0.2583 REMARK 3 2 4.9400 - 3.9200 0.99 2781 162 0.2358 0.3130 REMARK 3 3 3.9200 - 3.4200 0.99 2770 135 0.2810 0.3501 REMARK 3 4 3.4200 - 3.1100 0.98 2716 136 0.3507 0.4128 REMARK 3 5 3.1100 - 2.8900 0.74 2038 117 0.3944 0.3855 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4227 REMARK 3 ANGLE : 0.599 5718 REMARK 3 CHIRALITY : 0.042 608 REMARK 3 PLANARITY : 0.006 747 REMARK 3 DIHEDRAL : 8.577 565 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9E55 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1000289461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14773 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.890 REMARK 200 RESOLUTION RANGE LOW (A) : 43.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.99 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS 8.5, 0.2 M LITHIUM SULFATE, REMARK 280 AND 40 %(V/V) POLYETHYLENE GLYCOL 400, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 50.36450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.07796 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 109.56133 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 50.36450 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 29.07796 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 109.56133 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 50.36450 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 29.07796 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 109.56133 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 50.36450 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 29.07796 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 109.56133 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 50.36450 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 29.07796 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 109.56133 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 50.36450 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 29.07796 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 109.56133 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.15592 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 219.12267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 58.15592 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 219.12267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 58.15592 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 219.12267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 58.15592 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 219.12267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 58.15592 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 219.12267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 58.15592 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 219.12267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: NONAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: NONAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 34960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -173.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -50.36450 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -87.23387 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 50.36450 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -87.23387 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 402 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 201 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CH3 ACE P 1 SG CYS P 16 2.03 REMARK 500 OD1 ASN A 173 O6 NAG S 2 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG1 VAL B 66 NZ LYS B 83 3545 1.10 REMARK 500 CB VAL B 66 NZ LYS B 83 3545 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 145 N - CA - C ANGL. DEV. = -21.6 DEGREES REMARK 500 LYS A 148 N - CA - CB ANGL. DEV. = 17.6 DEGREES REMARK 500 LYS A 148 N - CA - C ANGL. DEV. = -21.9 DEGREES REMARK 500 ARG B 127 N - CA - C ANGL. DEV. = 28.9 DEGREES REMARK 500 ASP B 128 N - CA - CB ANGL. DEV. = 12.2 DEGREES REMARK 500 ASP B 128 N - CA - C ANGL. DEV. = -23.3 DEGREES REMARK 500 CYS B 144 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 CYS P 16 N - CA - CB ANGL. DEV. = 12.0 DEGREES REMARK 500 CYS P 16 N - CA - C ANGL. DEV. = -20.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 28 -166.34 -127.83 REMARK 500 ARG A 62 -129.81 60.30 REMARK 500 ASN A 96 -152.91 -114.40 REMARK 500 TRP A 130 75.97 -106.23 REMARK 500 SER A 136 36.47 -88.43 REMARK 500 SER A 150 -172.10 -172.57 REMARK 500 ASN A 162 -113.22 57.35 REMARK 500 TRP A 184 -157.58 -134.04 REMARK 500 LYS A 266 78.48 -113.64 REMARK 500 LYS A 314 46.56 -88.00 REMARK 500 SER B 27 70.00 -151.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 170 0.11 SIDE CHAIN REMARK 500 ARG B 106 0.28 SIDE CHAIN REMARK 500 ARG B 123 0.15 SIDE CHAIN REMARK 500 ARG B 153 0.09 SIDE CHAIN REMARK 500 ARG P 15 0.19 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG S 1 DBREF1 9E55 A 11 327 UNP A0A2P1MB68_9INFA DBREF2 9E55 A A0A2P1MB68 17 336 DBREF1 9E55 B 1 176 UNP A0A2P1MB68_9INFA DBREF2 9E55 B A0A2P1MB68 347 521 DBREF 9E55 P 1 16 PDB 9E55 9E55 1 16 SEQADV 9E55 ASP A 8 UNP A0A2P1MB6 EXPRESSION TAG SEQADV 9E55 PRO A 9 UNP A0A2P1MB6 EXPRESSION TAG SEQADV 9E55 GLY A 10 UNP A0A2P1MB6 EXPRESSION TAG SEQADV 9E55 LYS A 46 UNP A0A2P1MB6 THR 52 CONFLICT SEQADV 9E55 ASN A 96 UNP A0A2P1MB6 ASP 104 CONFLICT SEQADV 9E55 SER B 174 UNP A0A2P1MB6 INSERTION SEQRES 1 A 323 ASP PRO GLY ASP GLN ILE CYS ILE GLY TYR HIS ALA ASN SEQRES 2 A 323 ASN SER THR GLU GLN VAL ASP THR ILE MET GLU LYS ASN SEQRES 3 A 323 VAL THR VAL THR HIS ALA GLN ASP ILE LEU GLU LYS LYS SEQRES 4 A 323 HIS ASN GLY LYS LEU CYS ASP LEU ASP GLY VAL LYS PRO SEQRES 5 A 323 LEU ILE LEU ARG ASP CYS SER VAL ALA GLY TRP LEU LEU SEQRES 6 A 323 GLY ASN PRO MET CYS ASP GLU PHE ILE ASN VAL PRO GLU SEQRES 7 A 323 TRP SER TYR ILE VAL GLU LYS ALA ASN PRO VAL ASN ASN SEQRES 8 A 323 LEU CYS TYR PRO GLY ASP PHE ASN ASP TYR GLU GLU LEU SEQRES 9 A 323 LYS HIS LEU LEU SER ARG ILE ASN HIS PHE GLU LYS ILE SEQRES 10 A 323 GLN ILE ILE PRO LYS SER SER TRP SER SER HIS GLU ALA SEQRES 11 A 323 SER LEU GLY VAL SER SER ALA CYS PRO TYR GLN GLY LYS SEQRES 12 A 323 SER SER PHE PHE ARG ASN VAL VAL TRP LEU ILE LYS LYS SEQRES 13 A 323 ASN SER THR TYR PRO THR ILE LYS ARG SER TYR ASN ASN SEQRES 14 A 323 THR ASN GLN GLU ASP LEU LEU VAL LEU TRP GLY ILE HIS SEQRES 15 A 323 HIS PRO ASN ASP ALA ALA GLU GLN THR LYS LEU TYR GLN SEQRES 16 A 323 ASN PRO THR THR TYR ILE SER VAL GLY THR SER THR LEU SEQRES 17 A 323 ASN GLN ARG LEU VAL PRO ARG ILE ALA THR ARG SER LYS SEQRES 18 A 323 VAL ASN GLY GLN SER GLY ARG MET GLU PHE PHE TRP THR SEQRES 19 A 323 ILE LEU LYS PRO ASN ASP ALA ILE ASN PHE GLU SER ASN SEQRES 20 A 323 GLY ASN PHE ILE ALA PRO GLU TYR ALA TYR LYS ILE VAL SEQRES 21 A 323 LYS LYS GLY ASP SER THR ILE MET LYS SER GLU LEU GLU SEQRES 22 A 323 TYR GLY ASN CYS ASN THR LYS CYS GLN THR PRO MET GLY SEQRES 23 A 323 ALA ILE ASN SER SER MET PRO PHE HIS ASN ILE HIS PRO SEQRES 24 A 323 LEU THR ILE GLY GLU CYS PRO LYS TYR VAL LYS SER ASN SEQRES 25 A 323 ARG LEU VAL LEU ALA THR GLY LEU ARG ASN SER SEQRES 1 B 176 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU GLY GLY SEQRES 2 B 176 TRP GLN GLY MET VAL ASP GLY TRP TYR GLY TYR HIS HIS SEQRES 3 B 176 SER ASN GLU GLN GLY SER GLY TYR ALA ALA ASP LYS GLU SEQRES 4 B 176 SER THR GLN LYS ALA ILE ASP GLY VAL THR ASN LYS VAL SEQRES 5 B 176 ASN SER ILE ILE ASP LYS MET ASN THR GLN PHE GLU ALA SEQRES 6 B 176 VAL GLY ARG GLU PHE ASN ASN LEU GLU ARG ARG ILE GLU SEQRES 7 B 176 ASN LEU ASN LYS LYS MET GLU ASP GLY PHE LEU ASP VAL SEQRES 8 B 176 TRP THR TYR ASN ALA GLU LEU LEU VAL LEU MET GLU ASN SEQRES 9 B 176 GLU ARG THR LEU ASP PHE HIS ASP SER ASN VAL LYS ASN SEQRES 10 B 176 LEU TYR ASP LYS VAL ARG LEU GLN LEU ARG ASP ASN ALA SEQRES 11 B 176 LYS GLU LEU GLY ASN GLY CYS PHE GLU PHE TYR HIS LYS SEQRES 12 B 176 CYS ASP ASN GLU CYS MET GLU SER VAL ARG ASN GLY THR SEQRES 13 B 176 TYR ASP TYR PRO GLN TYR SER GLU GLU ALA ARG LEU LYS SEQRES 14 B 176 ARG GLU GLU ILE SER SER GLY SEQRES 1 P 16 ACE TRP THR GLY ASP PHE PHE SER SER HIS TYR THR VAL SEQRES 2 P 16 PRO ARG CYS HET ACE P 1 3 HET NAG S 1 14 HET NAG S 2 14 HETNAM ACE ACETYL GROUP HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 ACE C2 H4 O FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 5 HOH *3(H2 O) HELIX 1 AA1 SER A 65 GLY A 72 1 8 HELIX 2 AA2 ASN A 73 ILE A 80 5 8 HELIX 3 AA3 ASP A 105 SER A 114 1 10 HELIX 4 AA4 PRO A 126 TRP A 130 5 5 HELIX 5 AA5 ASP A 191 TYR A 199 1 9 HELIX 6 AA6 LYS A 226 GLN A 230 5 5 HELIX 7 AA7 ASP B 37 THR B 61 1 25 HELIX 8 AA8 GLU B 74 LEU B 126 1 53 HELIX 9 AA9 ASP B 145 GLY B 155 1 11 HELIX 10 AB1 ASP B 158 SER B 175 1 18 SHEET 1 AA1 5 SER B 32 ALA B 36 0 SHEET 2 AA1 5 TYR B 22 SER B 27 -1 N TYR B 24 O ALA B 35 SHEET 3 AA1 5 GLN A 12 TYR A 17 -1 N GLY A 16 O GLY B 23 SHEET 4 AA1 5 CYS B 137 PHE B 140 -1 O PHE B 138 N ILE A 13 SHEET 5 AA1 5 ALA B 130 GLU B 132 -1 N LYS B 131 O GLU B 139 SHEET 1 AA2 2 GLN A 25 VAL A 26 0 SHEET 2 AA2 2 VAL A 34 THR A 35 -1 O VAL A 34 N VAL A 26 SHEET 1 AA3 2 ALA A 39 ASP A 41 0 SHEET 2 AA3 2 VAL A 319 ALA A 321 -1 O LEU A 320 N GLN A 40 SHEET 1 AA4 3 LEU A 43 GLU A 44 0 SHEET 2 AA4 3 PHE A 298 HIS A 299 1 O PHE A 298 N GLU A 44 SHEET 3 AA4 3 LYS A 311 TYR A 312 1 O LYS A 311 N HIS A 299 SHEET 1 AA5 2 LEU A 51 LEU A 54 0 SHEET 2 AA5 2 TYR A 278 THR A 283 1 O THR A 283 N ASP A 53 SHEET 1 AA6 3 LEU A 59 ILE A 60 0 SHEET 2 AA6 3 ILE A 87 GLU A 89 1 O VAL A 88 N LEU A 59 SHEET 3 AA6 3 ILE A 271 LYS A 273 1 O MET A 272 N ILE A 87 SHEET 1 AA7 5 GLY A 101 PHE A 103 0 SHEET 2 AA7 5 ARG A 233 LEU A 241 1 O PHE A 236 N ASP A 102 SHEET 3 AA7 5 LEU A 180 HIS A 188 -1 N HIS A 188 O ARG A 233 SHEET 4 AA7 5 TYR A 260 LYS A 265 -1 O TYR A 262 N LEU A 181 SHEET 5 AA7 5 HIS A 118 GLN A 123 -1 N ILE A 122 O ALA A 261 SHEET 1 AA8 5 GLY A 101 PHE A 103 0 SHEET 2 AA8 5 ARG A 233 LEU A 241 1 O PHE A 236 N ASP A 102 SHEET 3 AA8 5 LEU A 180 HIS A 188 -1 N HIS A 188 O ARG A 233 SHEET 4 AA8 5 PHE A 255 PRO A 258 -1 O ILE A 256 N GLY A 185 SHEET 5 AA8 5 VAL A 155 TRP A 157 -1 N VAL A 156 O ALA A 257 SHEET 1 AA9 2 HIS A 133 GLU A 134 0 SHEET 2 AA9 2 ILE A 159 LYS A 160 -1 O ILE A 159 N GLU A 134 SHEET 1 AB1 2 SER A 140 PRO A 144 0 SHEET 2 AB1 2 SER A 149 SER A 150 -1 O SER A 150 N CYS A 143 SHEET 1 AB2 4 ILE A 168 ASN A 174 0 SHEET 2 AB2 4 ASP A 245 SER A 251 -1 O ASP A 245 N ASN A 174 SHEET 3 AB2 4 ILE A 206 GLY A 209 -1 N SER A 207 O GLU A 250 SHEET 4 AB2 4 ASN A 214 LEU A 217 -1 O GLN A 215 N VAL A 208 SHEET 1 AB3 3 ALA A 291 ILE A 292 0 SHEET 2 AB3 3 CYS A 285 GLN A 286 -1 N CYS A 285 O ILE A 292 SHEET 3 AB3 3 ILE A 306 GLY A 307 -1 O ILE A 306 N GLN A 286 SSBOND 1 CYS A 14 CYS B 137 1555 1555 2.03 SSBOND 2 CYS A 52 CYS A 281 1555 1555 2.03 SSBOND 3 CYS A 64 CYS A 76 1555 1555 2.03 SSBOND 4 CYS A 98 CYS A 143 1555 1555 2.03 SSBOND 5 CYS A 285 CYS A 309 1555 1555 2.02 SSBOND 6 CYS B 144 CYS B 148 1555 1555 2.01 LINK C ACE P 1 N TRP P 2 1555 1555 1.34 LINK O4 NAG S 1 C1 NAG S 2 1555 1555 1.44 CRYST1 100.729 100.729 328.684 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009928 0.005732 0.000000 0.00000 SCALE2 0.000000 0.011463 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003042 0.00000 CONECT 50 3655 CONECT 348 2211 CONECT 448 533 CONECT 533 448 CONECT 722 1084 CONECT 1084 722 CONECT 2211 348 CONECT 2241 2420 CONECT 2420 2241 CONECT 3655 50 CONECT 3723 3754 CONECT 3754 3723 CONECT 3986 3987 3988 3989 CONECT 3987 3986 CONECT 3988 3986 CONECT 3989 3986 CONECT 4117 4118 4128 CONECT 4118 4117 4119 4125 CONECT 4119 4118 4120 4126 CONECT 4120 4119 4121 4127 CONECT 4121 4120 4122 4128 CONECT 4122 4121 4129 CONECT 4123 4124 4125 4130 CONECT 4124 4123 CONECT 4125 4118 4123 CONECT 4126 4119 CONECT 4127 4120 4131 CONECT 4128 4117 4121 CONECT 4129 4122 CONECT 4130 4123 CONECT 4131 4127 4132 4142 CONECT 4132 4131 4133 4139 CONECT 4133 4132 4134 4140 CONECT 4134 4133 4135 4141 CONECT 4135 4134 4136 4142 CONECT 4136 4135 4143 CONECT 4137 4138 4139 4144 CONECT 4138 4137 CONECT 4139 4132 4137 CONECT 4140 4133 CONECT 4141 4134 CONECT 4142 4131 4135 CONECT 4143 4136 CONECT 4144 4137 MASTER 381 0 3 10 38 0 0 6 4144 3 44 41 END