HEADER TRANSLATION 28-OCT-24 9E5A TITLE CRYSTAL STRUCTURE OF ACANTHAMOEBA POLYPHAGA MIMIVIRUS (APMV) VIF4G 53- TITLE 2 312 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN R255; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACANTHAMOEBA POLYPHAGA MIMIVIRUS; SOURCE 3 ORGANISM_TAXID: 212035; SOURCE 4 GENE: MIMI_R255; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS EIF4G, EIF4F, APMV, TRANSLATION FACTOR, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR J.M.FELS,A.B.HILL,P.J.KRANZUSCH,A.S.Y.LEE REVDAT 1 25-FEB-26 9E5A 0 JRNL AUTH J.M.FELS,A.B.HILL,P.J.KRANZUSCH,A.S.Y.LEE JRNL TITL CRYSTAL STRUCTURE OF ACANTHAMOEBA POLYPHAGA MIMIVIRUS (APMV) JRNL TITL 2 VIF4G 54-312 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 86220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 4175 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3500 - 4.5500 1.00 2882 158 0.1752 0.1707 REMARK 3 2 4.5400 - 3.6100 0.96 2779 118 0.1551 0.1543 REMARK 3 3 3.6100 - 3.1500 0.98 2797 127 0.1634 0.1821 REMARK 3 4 3.1500 - 2.8600 0.98 2852 90 0.1699 0.1946 REMARK 3 5 2.8600 - 2.6600 0.99 2784 133 0.1651 0.2040 REMARK 3 6 2.6600 - 2.5000 0.98 2814 160 0.1551 0.1807 REMARK 3 7 2.5000 - 2.3800 0.99 2758 172 0.1534 0.1793 REMARK 3 8 2.3800 - 2.2700 0.98 2742 163 0.1554 0.1760 REMARK 3 9 2.2700 - 2.1900 0.98 2806 126 0.1518 0.1898 REMARK 3 10 2.1900 - 2.1100 0.98 2777 141 0.1514 0.1976 REMARK 3 11 2.1100 - 2.0400 0.98 2718 176 0.1592 0.1982 REMARK 3 12 2.0400 - 1.9900 0.97 2743 152 0.1669 0.1837 REMARK 3 13 1.9900 - 1.9300 0.88 2506 137 0.1784 0.2211 REMARK 3 14 1.9300 - 1.8900 0.96 2715 139 0.1814 0.2009 REMARK 3 15 1.8900 - 1.8400 0.97 2684 149 0.1814 0.2013 REMARK 3 16 1.8400 - 1.8000 0.97 2765 147 0.1933 0.2304 REMARK 3 17 1.8000 - 1.7700 0.97 2743 155 0.2004 0.2555 REMARK 3 18 1.7700 - 1.7300 0.97 2704 137 0.2107 0.2510 REMARK 3 19 1.7300 - 1.7000 0.97 2745 146 0.2074 0.2646 REMARK 3 20 1.7000 - 1.6700 0.97 2737 118 0.2158 0.2238 REMARK 3 21 1.6700 - 1.6500 0.96 2754 98 0.2201 0.2839 REMARK 3 22 1.6500 - 1.6200 0.96 2739 114 0.2221 0.2219 REMARK 3 23 1.6200 - 1.6000 0.96 2693 145 0.2321 0.2872 REMARK 3 24 1.6000 - 1.5800 0.96 2723 139 0.2432 0.2402 REMARK 3 25 1.5800 - 1.5500 0.96 2714 145 0.2515 0.2331 REMARK 3 26 1.5500 - 1.5300 0.96 2693 136 0.2546 0.2604 REMARK 3 27 1.5300 - 1.5200 0.96 2697 139 0.2743 0.2902 REMARK 3 28 1.5200 - 1.5000 0.95 2693 137 0.2828 0.2950 REMARK 3 29 1.5000 - 1.4800 0.95 2676 132 0.2841 0.3506 REMARK 3 30 1.4800 - 1.4600 0.94 2612 146 0.3108 0.3142 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.164 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4081 REMARK 3 ANGLE : 0.583 5506 REMARK 3 CHIRALITY : 0.056 668 REMARK 3 PLANARITY : 0.004 689 REMARK 3 DIHEDRAL : 10.756 1556 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8795 -5.9393 42.9934 REMARK 3 T TENSOR REMARK 3 T11: 0.2522 T22: 0.1378 REMARK 3 T33: 0.1644 T12: 0.0038 REMARK 3 T13: 0.0159 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 3.9890 L22: 1.4910 REMARK 3 L33: 1.8996 L12: -0.0550 REMARK 3 L13: 0.7274 L23: -0.2749 REMARK 3 S TENSOR REMARK 3 S11: -0.1413 S12: -0.1278 S13: -0.1437 REMARK 3 S21: 0.2930 S22: 0.0488 S23: 0.0202 REMARK 3 S31: 0.0855 S32: -0.0908 S33: 0.0835 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1453 -5.9290 32.4340 REMARK 3 T TENSOR REMARK 3 T11: 0.1835 T22: 0.1780 REMARK 3 T33: 0.1843 T12: -0.0152 REMARK 3 T13: 0.0207 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.1372 L22: 3.6989 REMARK 3 L33: 2.3905 L12: -0.6134 REMARK 3 L13: 0.4788 L23: -1.7738 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: 0.0642 S13: -0.0031 REMARK 3 S21: 0.1290 S22: -0.1097 S23: 0.0386 REMARK 3 S31: 0.1456 S32: 0.0139 S33: 0.0545 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8930 3.8781 14.0651 REMARK 3 T TENSOR REMARK 3 T11: 0.1342 T22: 0.1722 REMARK 3 T33: 0.1626 T12: 0.0106 REMARK 3 T13: 0.0057 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.7115 L22: 1.4539 REMARK 3 L33: 0.5183 L12: 0.3105 REMARK 3 L13: -0.1436 L23: 0.1374 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: 0.0420 S13: 0.0301 REMARK 3 S21: -0.0497 S22: -0.0195 S23: 0.0023 REMARK 3 S31: -0.0043 S32: 0.0123 S33: -0.0167 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6799 16.9348 -16.6679 REMARK 3 T TENSOR REMARK 3 T11: 0.3247 T22: 0.3496 REMARK 3 T33: 0.1545 T12: 0.0805 REMARK 3 T13: 0.0203 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 3.2431 L22: 3.1891 REMARK 3 L33: 1.6544 L12: -0.7021 REMARK 3 L13: -0.2209 L23: -0.4693 REMARK 3 S TENSOR REMARK 3 S11: 0.2530 S12: 0.4724 S13: 0.0728 REMARK 3 S21: -0.5503 S22: -0.2593 S23: -0.2011 REMARK 3 S31: -0.1730 S32: 0.1079 S33: 0.0211 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4206 10.5701 -9.2283 REMARK 3 T TENSOR REMARK 3 T11: 0.2234 T22: 0.1428 REMARK 3 T33: 0.2172 T12: 0.0398 REMARK 3 T13: -0.0336 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 8.2155 L22: 2.6350 REMARK 3 L33: 3.9854 L12: -2.6113 REMARK 3 L13: 2.9432 L23: -0.8979 REMARK 3 S TENSOR REMARK 3 S11: 0.3463 S12: 0.3121 S13: -0.7049 REMARK 3 S21: -0.3219 S22: -0.1838 S23: 0.5530 REMARK 3 S31: 0.1699 S32: -0.0471 S33: -0.1572 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 103 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5119 17.6381 -5.9610 REMARK 3 T TENSOR REMARK 3 T11: 0.2217 T22: 0.2066 REMARK 3 T33: 0.2260 T12: -0.0108 REMARK 3 T13: 0.0141 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 2.6672 L22: 6.8699 REMARK 3 L33: 2.6492 L12: -1.7797 REMARK 3 L13: -0.4346 L23: -1.8667 REMARK 3 S TENSOR REMARK 3 S11: 0.1501 S12: 0.1026 S13: 0.2967 REMARK 3 S21: 0.0002 S22: -0.2719 S23: -0.9251 REMARK 3 S31: -0.2219 S32: 0.6113 S33: 0.1181 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4709 15.8157 -5.4003 REMARK 3 T TENSOR REMARK 3 T11: 0.1580 T22: 0.1389 REMARK 3 T33: 0.1982 T12: 0.0047 REMARK 3 T13: -0.0285 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.9146 L22: 2.3032 REMARK 3 L33: 3.3456 L12: -0.4848 REMARK 3 L13: 0.9030 L23: -1.5155 REMARK 3 S TENSOR REMARK 3 S11: 0.1993 S12: 0.1166 S13: -0.1028 REMARK 3 S21: -0.2928 S22: 0.0612 S23: 0.4835 REMARK 3 S31: 0.0206 S32: -0.1611 S33: -0.1946 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 153 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8456 -6.3595 9.5349 REMARK 3 T TENSOR REMARK 3 T11: 0.1642 T22: 0.1484 REMARK 3 T33: 0.2142 T12: -0.0203 REMARK 3 T13: -0.0301 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 8.1302 L22: 4.5430 REMARK 3 L33: 1.4669 L12: -5.3064 REMARK 3 L13: -2.1369 L23: 1.5368 REMARK 3 S TENSOR REMARK 3 S11: 0.0468 S12: -0.0403 S13: -0.6505 REMARK 3 S21: 0.0267 S22: -0.1102 S23: 0.1855 REMARK 3 S31: 0.1428 S32: 0.0169 S33: 0.0755 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 169 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8828 11.0367 3.2758 REMARK 3 T TENSOR REMARK 3 T11: 0.1197 T22: 0.1450 REMARK 3 T33: 0.1015 T12: -0.0121 REMARK 3 T13: 0.0013 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.7790 L22: 5.0489 REMARK 3 L33: 1.0100 L12: -1.7204 REMARK 3 L13: -0.2717 L23: 0.9061 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: -0.0298 S13: 0.0774 REMARK 3 S21: -0.1074 S22: 0.0341 S23: -0.1398 REMARK 3 S31: -0.0429 S32: 0.0807 S33: -0.0758 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 205 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1826 2.8971 21.3632 REMARK 3 T TENSOR REMARK 3 T11: 0.2054 T22: 0.2071 REMARK 3 T33: 0.1622 T12: -0.0212 REMARK 3 T13: 0.0173 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 2.4424 L22: 7.2689 REMARK 3 L33: 2.6614 L12: -1.5112 REMARK 3 L13: 0.2006 L23: -1.6269 REMARK 3 S TENSOR REMARK 3 S11: -0.0907 S12: -0.3186 S13: -0.3410 REMARK 3 S21: 0.5169 S22: 0.1138 S23: 0.0720 REMARK 3 S31: 0.2301 S32: 0.0692 S33: -0.0178 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 241 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4767 5.6168 15.2736 REMARK 3 T TENSOR REMARK 3 T11: 0.1049 T22: 0.1757 REMARK 3 T33: 0.1215 T12: 0.0034 REMARK 3 T13: -0.0210 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.0526 L22: 4.1202 REMARK 3 L33: 1.5629 L12: 0.6269 REMARK 3 L13: -0.2636 L23: 0.3257 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: -0.1434 S13: -0.2027 REMARK 3 S21: 0.1528 S22: -0.0296 S23: -0.2873 REMARK 3 S31: 0.1668 S32: 0.0963 S33: 0.0473 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 272 THROUGH 298 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4028 15.1363 21.4998 REMARK 3 T TENSOR REMARK 3 T11: 0.1913 T22: 0.2052 REMARK 3 T33: 0.1393 T12: -0.0256 REMARK 3 T13: -0.0051 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 3.3252 L22: 4.8833 REMARK 3 L33: 0.6600 L12: -2.9218 REMARK 3 L13: 0.2756 L23: -0.6292 REMARK 3 S TENSOR REMARK 3 S11: -0.1376 S12: -0.2785 S13: 0.1013 REMARK 3 S21: 0.4320 S22: 0.1546 S23: -0.1256 REMARK 3 S31: -0.0595 S32: 0.0423 S33: -0.0252 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 299 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1702 11.1044 16.3454 REMARK 3 T TENSOR REMARK 3 T11: 0.1614 T22: 0.2661 REMARK 3 T33: 0.2696 T12: 0.0230 REMARK 3 T13: -0.0010 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 5.9225 L22: 3.3366 REMARK 3 L33: 5.3032 L12: -2.8828 REMARK 3 L13: -0.9953 L23: 3.6370 REMARK 3 S TENSOR REMARK 3 S11: 0.1564 S12: 0.0533 S13: 0.4486 REMARK 3 S21: -0.1930 S22: -0.3196 S23: -0.2273 REMARK 3 S31: -0.0847 S32: -0.0591 S33: 0.2185 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9E5A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1000288871. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86228 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 49.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NASCN AND 20% PEG 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.65850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 126 REMARK 465 ALA A 127 REMARK 465 ASP A 128 REMARK 465 SER A 129 REMARK 465 GLU A 130 REMARK 465 THR A 131 REMARK 465 LYS A 132 REMARK 465 LYS A 133 REMARK 465 ASN A 312 REMARK 465 GLU B 106 REMARK 465 ASP B 128 REMARK 465 SER B 129 REMARK 465 TYR B 234 REMARK 465 ASP B 235 REMARK 465 GLY B 236 REMARK 465 ASP B 237 REMARK 465 ASP B 238 REMARK 465 CYS B 239 REMARK 465 ASN B 312 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 643 O HOH A 656 1.83 REMARK 500 ND2 ASN A 111 O HOH A 401 1.84 REMARK 500 O HOH A 499 O HOH A 537 1.85 REMARK 500 O HOH B 587 O HOH B 626 1.85 REMARK 500 O HOH A 526 O HOH A 616 1.86 REMARK 500 O HOH B 552 O HOH B 619 1.90 REMARK 500 O HOH B 541 O HOH B 627 1.92 REMARK 500 O HOH B 407 O HOH B 602 1.92 REMARK 500 O HOH B 418 O HOH B 584 1.96 REMARK 500 O HOH B 601 O HOH B 652 1.97 REMARK 500 O HOH A 465 O HOH A 624 1.97 REMARK 500 O HOH B 588 O HOH B 626 1.98 REMARK 500 O HOH A 577 O HOH A 646 1.99 REMARK 500 O HOH B 594 O HOH B 616 1.99 REMARK 500 O HOH A 499 O HOH A 669 2.00 REMARK 500 O HOH A 552 O HOH A 633 2.03 REMARK 500 O HOH B 547 O HOH B 576 2.04 REMARK 500 O HOH A 408 O HOH A 636 2.04 REMARK 500 O HOH B 471 O HOH B 590 2.04 REMARK 500 O HOH B 482 O HOH B 609 2.05 REMARK 500 O HOH A 498 O HOH A 649 2.06 REMARK 500 O HOH B 412 O HOH B 471 2.08 REMARK 500 OE1 GLU B 287 O HOH B 401 2.08 REMARK 500 O HOH A 512 O HOH A 644 2.09 REMARK 500 O HOH A 447 O HOH A 630 2.09 REMARK 500 O HOH B 551 O HOH B 598 2.10 REMARK 500 O HOH A 615 O HOH A 617 2.12 REMARK 500 O HOH A 560 O HOH A 647 2.12 REMARK 500 O HOH A 648 O HOH A 672 2.13 REMARK 500 O HOH A 401 O HOH A 626 2.16 REMARK 500 O HOH A 585 O HOH A 627 2.16 REMARK 500 NE2 GLN A 310 O HOH A 402 2.19 REMARK 500 O HOH A 412 O HOH A 548 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 428 O HOH A 625 2556 1.86 REMARK 500 O HOH B 585 O HOH B 595 2655 1.92 REMARK 500 O HOH A 545 O HOH B 600 2545 1.95 REMARK 500 O HOH A 580 O HOH B 416 1455 1.99 REMARK 500 O HOH A 580 O HOH B 581 1455 2.06 REMARK 500 O HOH A 506 O HOH B 416 1455 2.07 REMARK 500 O HOH A 639 O HOH B 581 1455 2.08 REMARK 500 O HOH A 482 O HOH A 625 2556 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 107 -154.09 -135.67 REMARK 500 ASP A 238 105.66 -58.76 REMARK 500 ASP A 241 92.47 -162.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 674 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 675 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH B 654 DISTANCE = 5.88 ANGSTROMS DBREF 9E5A A 53 312 UNP Q5UPT9 YR255_MIMIV 53 312 DBREF 9E5A B 53 312 UNP Q5UPT9 YR255_MIMIV 53 312 SEQRES 1 A 260 SER LEU THR ILE ASN ILE ARG GLN LEU PHE ASN SER LEU SEQRES 2 A 260 SER ASP THR ASN ILE ASN LYS VAL LYS ASP GLN LEU LYS SEQRES 3 A 260 GLU THR ILE ILE THR LYS ALA LYS ASN GLU ASN MET ILE SEQRES 4 A 260 GLU GLU ILE ALA LYS GLU ILE LEU SER ASN PHE VAL ILE SEQRES 5 A 260 SER GLU LYS ASN ILE ARG ASN TYR MET VAL LEU LEU ASN SEQRES 6 A 260 ALA VAL SER GLY THR CYS VAL LEU LEU ALA ASP SER GLU SEQRES 7 A 260 THR LYS LYS THR SER PRO THR ILE GLY LYS TYR PHE ILE SEQRES 8 A 260 ASP ASN CYS LYS THR ASP ILE PHE HIS HIS ILE SER GLU SEQRES 9 A 260 SER THR VAL ARG GLU LEU ALA ASN MET ASP LEU ASP ASP SEQRES 10 A 260 SER ASP GLN LEU ASP LEU TYR ASN ARG LYS ARG GLU THR SEQRES 11 A 260 VAL ILE ASN LEU ILE LEU THR LEU CYS PHE LEU TYR GLY SEQRES 12 A 260 GLN ARG ASN THR ASP LEU ILE ARG LEU THR ALA SER GLN SEQRES 13 A 260 LEU TYR PRO LEU ILE ASN THR ILE MET ASN THR TYR ASP SEQRES 14 A 260 SER LEU GLN ALA LYS MET LYS ILE LEU GLY ASN PRO TYR SEQRES 15 A 260 ASP GLY ASP ASP CYS GLU ASP GLU GLU GLU TYR GLU ILE SEQRES 16 A 260 LEU SER LYS MET CYS THR ILE TYR ALA GLU GLN LEU TYR SEQRES 17 A 260 THR PHE ILE ASN LYS GLU VAL SER SER PHE LEU LEU ASP SEQRES 18 A 260 ASP THR VAL VAL LYS GLY MET LEU MET LYS ASN LEU VAL SEQRES 19 A 260 GLU ARG PHE LYS ASN THR ILE VAL PRO THR LEU THR GLU SEQRES 20 A 260 ALA TYR LEU ARG SER LYS CYS SER CYS ILE GLN TYR ASN SEQRES 1 B 260 SER LEU THR ILE ASN ILE ARG GLN LEU PHE ASN SER LEU SEQRES 2 B 260 SER ASP THR ASN ILE ASN LYS VAL LYS ASP GLN LEU LYS SEQRES 3 B 260 GLU THR ILE ILE THR LYS ALA LYS ASN GLU ASN MET ILE SEQRES 4 B 260 GLU GLU ILE ALA LYS GLU ILE LEU SER ASN PHE VAL ILE SEQRES 5 B 260 SER GLU LYS ASN ILE ARG ASN TYR MET VAL LEU LEU ASN SEQRES 6 B 260 ALA VAL SER GLY THR CYS VAL LEU LEU ALA ASP SER GLU SEQRES 7 B 260 THR LYS LYS THR SER PRO THR ILE GLY LYS TYR PHE ILE SEQRES 8 B 260 ASP ASN CYS LYS THR ASP ILE PHE HIS HIS ILE SER GLU SEQRES 9 B 260 SER THR VAL ARG GLU LEU ALA ASN MET ASP LEU ASP ASP SEQRES 10 B 260 SER ASP GLN LEU ASP LEU TYR ASN ARG LYS ARG GLU THR SEQRES 11 B 260 VAL ILE ASN LEU ILE LEU THR LEU CYS PHE LEU TYR GLY SEQRES 12 B 260 GLN ARG ASN THR ASP LEU ILE ARG LEU THR ALA SER GLN SEQRES 13 B 260 LEU TYR PRO LEU ILE ASN THR ILE MET ASN THR TYR ASP SEQRES 14 B 260 SER LEU GLN ALA LYS MET LYS ILE LEU GLY ASN PRO TYR SEQRES 15 B 260 ASP GLY ASP ASP CYS GLU ASP GLU GLU GLU TYR GLU ILE SEQRES 16 B 260 LEU SER LYS MET CYS THR ILE TYR ALA GLU GLN LEU TYR SEQRES 17 B 260 THR PHE ILE ASN LYS GLU VAL SER SER PHE LEU LEU ASP SEQRES 18 B 260 ASP THR VAL VAL LYS GLY MET LEU MET LYS ASN LEU VAL SEQRES 19 B 260 GLU ARG PHE LYS ASN THR ILE VAL PRO THR LEU THR GLU SEQRES 20 B 260 ALA TYR LEU ARG SER LYS CYS SER CYS ILE GLN TYR ASN FORMUL 3 HOH *529(H2 O) HELIX 1 AA1 SER A 53 LEU A 65 1 13 HELIX 2 AA2 ASN A 69 ALA A 85 1 17 HELIX 3 AA3 ASN A 87 SER A 105 1 19 HELIX 4 AA4 ASN A 108 SER A 120 1 13 HELIX 5 AA5 THR A 137 SER A 155 1 19 HELIX 6 AA6 SER A 155 ASN A 164 1 10 HELIX 7 AA7 ASP A 169 GLN A 196 1 28 HELIX 8 AA8 THR A 205 GLY A 231 1 27 HELIX 9 AA9 ASN A 232 GLY A 236 5 5 HELIX 10 AB1 ASP A 241 ASP A 273 1 33 HELIX 11 AB2 LEU A 281 ILE A 293 1 13 HELIX 12 AB3 VAL A 294 LEU A 297 5 4 HELIX 13 AB4 GLU A 299 SER A 307 1 9 HELIX 14 AB5 LEU B 54 LEU B 65 1 12 HELIX 15 AB6 ASN B 69 ALA B 85 1 17 HELIX 16 AB7 ASN B 87 ILE B 104 1 18 HELIX 17 AB8 ASN B 111 SER B 120 1 10 HELIX 18 AB9 THR B 137 ILE B 154 1 18 HELIX 19 AC1 SER B 155 ASN B 164 1 10 HELIX 20 AC2 ASP B 169 GLY B 195 1 27 HELIX 21 AC3 THR B 205 GLY B 231 1 27 HELIX 22 AC4 ASP B 241 ASP B 273 1 33 HELIX 23 AC5 LEU B 281 ILE B 293 1 13 HELIX 24 AC6 VAL B 294 LEU B 297 5 4 HELIX 25 AC7 GLU B 299 CYS B 308 1 10 SHEET 1 AA1 2 LEU B 125 LEU B 126 0 SHEET 2 AA1 2 LYS B 132 LYS B 133 -1 O LYS B 132 N LEU B 126 CRYST1 55.654 91.317 58.529 90.00 117.54 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017968 0.000000 0.009370 0.00000 SCALE2 0.000000 0.010951 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019269 0.00000 MASTER 539 0 0 25 2 0 0 6 4565 2 0 40 END