data_9E75 # _entry.id 9E75 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.407 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9E75 pdb_00009e75 10.2210/pdb9e75/pdb WWPDB D_1000289664 ? ? EMDB EMD-47658 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-11-05 ? 2 'EM metadata' 1 0 2025-11-05 ? 3 FSC 1 0 2025-11-05 ? 4 'Half map' 1 0 2025-11-05 1 5 'Half map' 1 0 2025-11-05 2 6 Image 1 0 2025-11-05 ? 7 Mask 1 0 2025-11-05 1 8 'Primary map' 1 0 2025-11-05 ? 9 'Structure model' 2 0 2025-12-03 ? 10 'EM metadata' 1 1 2025-12-03 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 Mask repository 'Initial release' ? ? 8 8 'Primary map' repository 'Initial release' ? ? 9 9 'Structure model' author 'Coordinate replacement' 'Model completeness' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 9 'Structure model' 'Atomic model' 2 9 'Structure model' 'Data collection' 3 9 'Structure model' 'Derived calculations' 4 9 'Structure model' 'Refinement description' 5 9 'Structure model' 'Structure summary' 6 10 'EM metadata' 'Data processing' 7 10 'EM metadata' 'Experimental summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 9 'Structure model' atom_site 2 9 'Structure model' em_admin 3 9 'Structure model' em_software 4 9 'Structure model' ndb_struct_conf_na 5 9 'Structure model' ndb_struct_na_base_pair 6 9 'Structure model' ndb_struct_na_base_pair_step 7 9 'Structure model' pdbx_contact_author 8 9 'Structure model' pdbx_struct_assembly 9 9 'Structure model' refine_ls_restr 10 9 'Structure model' struct_conn 11 10 'EM metadata' em_admin 12 10 'EM metadata' em_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 9 'Structure model' '_atom_site.B_iso_or_equiv' 2 9 'Structure model' '_atom_site.Cartn_x' 3 9 'Structure model' '_atom_site.Cartn_y' 4 9 'Structure model' '_atom_site.Cartn_z' 5 9 'Structure model' '_em_admin.last_update' 6 9 'Structure model' '_ndb_struct_conf_na.feature' 7 9 'Structure model' '_pdbx_struct_assembly.details' 8 9 'Structure model' '_refine_ls_restr.dev_ideal' 9 9 'Structure model' '_refine_ls_restr.number' 10 10 'EM metadata' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9E75 _pdbx_database_status.recvd_initial_deposition_date 2024-10-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of a bacterial non-coding RNA' _pdbx_database_related.db_id EMD-47658 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email feigon@mbi.ucla.edu _pdbx_contact_author.name_first Juli _pdbx_contact_author.name_last Feigon _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3376-435X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'He, Y.' 1 0000-0002-1368-6422 'Zhong, J.' 2 ? 'Yang, Y.' 3 ? 'Gunsalus, R.P.' 4 ? 'Zhou, Z.H.' 5 ? 'Feigon, J.' 6 0000-0003-3376-435X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Cryo-EM structures reveal a conserved architecture for RaiA non-coding RNA' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'He, Y.' 1 0000-0002-1368-6422 primary 'Zhong, J.' 2 ? primary 'Yang, Y.' 3 ? primary 'Gunsalus, R.P.' 4 ? primary 'Zhou, Z.H.' 5 ? primary 'Feigon, J.' 6 0000-0003-3376-435X # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'RNA (155-MER)' _entity.formula_weight 53632.918 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGUAAGGUCAUGUUCGUGGUUGAAAGUCCAAGCCAGCUACGGGCAAAGGGAUCCACGUAAGCUGCUGCGGAGACGGCAGU GAUCAUGGCGUAGCUUAGAAGUAAGUCCUCCGGGAAACUCGGGUUAAGGCAAGUGUGGGGUCAAAAACCAGGUCGAGUGG CCUUG ; _entity_poly.pdbx_seq_one_letter_code_can ;GGUAAGGUCAUGUUCGUGGUUGAAAGUCCAAGCCAGCUACGGGCAAAGGGAUCCACGUAAGCUGCUGCGGAGACGGCAGU GAUCAUGGCGUAGCUUAGAAGUAAGUCCUCCGGGAAACUCGGGUUAAGGCAAGUGUGGGGUCAAAAACCAGGUCGAGUGG CCUUG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 U n 1 4 A n 1 5 A n 1 6 G n 1 7 G n 1 8 U n 1 9 C n 1 10 A n 1 11 U n 1 12 G n 1 13 U n 1 14 U n 1 15 C n 1 16 G n 1 17 U n 1 18 G n 1 19 G n 1 20 U n 1 21 U n 1 22 G n 1 23 A n 1 24 A n 1 25 A n 1 26 G n 1 27 U n 1 28 C n 1 29 C n 1 30 A n 1 31 A n 1 32 G n 1 33 C n 1 34 C n 1 35 A n 1 36 G n 1 37 C n 1 38 U n 1 39 A n 1 40 C n 1 41 G n 1 42 G n 1 43 G n 1 44 C n 1 45 A n 1 46 A n 1 47 A n 1 48 G n 1 49 G n 1 50 G n 1 51 A n 1 52 U n 1 53 C n 1 54 C n 1 55 A n 1 56 C n 1 57 G n 1 58 U n 1 59 A n 1 60 A n 1 61 G n 1 62 C n 1 63 U n 1 64 G n 1 65 C n 1 66 U n 1 67 G n 1 68 C n 1 69 G n 1 70 G n 1 71 A n 1 72 G n 1 73 A n 1 74 C n 1 75 G n 1 76 G n 1 77 C n 1 78 A n 1 79 G n 1 80 U n 1 81 G n 1 82 A n 1 83 U n 1 84 C n 1 85 A n 1 86 U n 1 87 G n 1 88 G n 1 89 C n 1 90 G n 1 91 U n 1 92 A n 1 93 G n 1 94 C n 1 95 U n 1 96 U n 1 97 A n 1 98 G n 1 99 A n 1 100 A n 1 101 G n 1 102 U n 1 103 A n 1 104 A n 1 105 G n 1 106 U n 1 107 C n 1 108 C n 1 109 U n 1 110 C n 1 111 C n 1 112 G n 1 113 G n 1 114 G n 1 115 A n 1 116 A n 1 117 A n 1 118 C n 1 119 U n 1 120 C n 1 121 G n 1 122 G n 1 123 G n 1 124 U n 1 125 U n 1 126 A n 1 127 A n 1 128 G n 1 129 G n 1 130 C n 1 131 A n 1 132 A n 1 133 G n 1 134 U n 1 135 G n 1 136 U n 1 137 G n 1 138 G n 1 139 G n 1 140 G n 1 141 U n 1 142 C n 1 143 A n 1 144 A n 1 145 A n 1 146 A n 1 147 A n 1 148 C n 1 149 C n 1 150 A n 1 151 G n 1 152 G n 1 153 U n 1 154 C n 1 155 G n 1 156 A n 1 157 G n 1 158 U n 1 159 G n 1 160 G n 1 161 C n 1 162 C n 1 163 U n 1 164 U n 1 165 G n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 165 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Mogibacterium pumilum' _entity_src_nat.pdbx_ncbi_taxonomy_id 86332 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 -1 ? ? ? A . n A 1 2 G 2 0 ? ? ? A . n A 1 3 U 3 1 1 U U A . n A 1 4 A 4 2 2 A A A . n A 1 5 A 5 3 3 A A A . n A 1 6 G 6 4 4 G G A . n A 1 7 G 7 5 5 G G A . n A 1 8 U 8 6 6 U U A . n A 1 9 C 9 7 7 C C A . n A 1 10 A 10 8 8 A A A . n A 1 11 U 11 9 9 U U A . n A 1 12 G 12 10 10 G G A . n A 1 13 U 13 11 11 U U A . n A 1 14 U 14 12 12 U U A . n A 1 15 C 15 13 13 C C A . n A 1 16 G 16 14 14 G G A . n A 1 17 U 17 15 15 U U A . n A 1 18 G 18 16 16 G G A . n A 1 19 G 19 17 17 G G A . n A 1 20 U 20 18 18 U U A . n A 1 21 U 21 19 19 U U A . n A 1 22 G 22 20 20 G G A . n A 1 23 A 23 21 21 A A A . n A 1 24 A 24 22 22 A A A . n A 1 25 A 25 23 23 A A A . n A 1 26 G 26 24 24 G G A . n A 1 27 U 27 25 25 U U A . n A 1 28 C 28 26 26 C C A . n A 1 29 C 29 27 27 C C A . n A 1 30 A 30 28 28 A A A . n A 1 31 A 31 29 29 A A A . n A 1 32 G 32 30 30 G G A . n A 1 33 C 33 31 31 C C A . n A 1 34 C 34 32 32 C C A . n A 1 35 A 35 33 33 A A A . n A 1 36 G 36 34 34 G G A . n A 1 37 C 37 35 35 C C A . n A 1 38 U 38 36 36 U U A . n A 1 39 A 39 37 37 A A A . n A 1 40 C 40 38 38 C C A . n A 1 41 G 41 39 39 G G A . n A 1 42 G 42 40 40 G G A . n A 1 43 G 43 41 41 G G A . n A 1 44 C 44 42 42 C C A . n A 1 45 A 45 43 43 A A A . n A 1 46 A 46 44 44 A A A . n A 1 47 A 47 45 45 A A A . n A 1 48 G 48 46 46 G G A . n A 1 49 G 49 47 47 G G A . n A 1 50 G 50 48 48 G G A . n A 1 51 A 51 49 49 A A A . n A 1 52 U 52 50 50 U U A . n A 1 53 C 53 51 51 C C A . n A 1 54 C 54 52 52 C C A . n A 1 55 A 55 53 53 A A A . n A 1 56 C 56 54 54 C C A . n A 1 57 G 57 55 55 G G A . n A 1 58 U 58 56 56 U U A . n A 1 59 A 59 57 57 A A A . n A 1 60 A 60 58 58 A A A . n A 1 61 G 61 59 59 G G A . n A 1 62 C 62 60 60 C C A . n A 1 63 U 63 61 61 U U A . n A 1 64 G 64 62 62 G G A . n A 1 65 C 65 63 63 C C A . n A 1 66 U 66 64 64 U U A . n A 1 67 G 67 65 65 G G A . n A 1 68 C 68 66 66 C C A . n A 1 69 G 69 67 67 G G A . n A 1 70 G 70 68 68 G G A . n A 1 71 A 71 69 69 A A A . n A 1 72 G 72 70 70 G G A . n A 1 73 A 73 71 71 A A A . n A 1 74 C 74 72 72 C C A . n A 1 75 G 75 73 73 G G A . n A 1 76 G 76 74 74 G G A . n A 1 77 C 77 75 75 C C A . n A 1 78 A 78 76 76 A A A . n A 1 79 G 79 77 77 G G A . n A 1 80 U 80 78 78 U U A . n A 1 81 G 81 79 79 G G A . n A 1 82 A 82 80 80 A A A . n A 1 83 U 83 81 81 U U A . n A 1 84 C 84 82 82 C C A . n A 1 85 A 85 83 83 A A A . n A 1 86 U 86 84 84 U U A . n A 1 87 G 87 85 85 G G A . n A 1 88 G 88 86 86 G G A . n A 1 89 C 89 87 87 C C A . n A 1 90 G 90 88 88 G G A . n A 1 91 U 91 89 89 U U A . n A 1 92 A 92 90 90 A A A . n A 1 93 G 93 91 91 G G A . n A 1 94 C 94 92 92 C C A . n A 1 95 U 95 93 93 U U A . n A 1 96 U 96 94 94 U U A . n A 1 97 A 97 95 ? ? ? A . n A 1 98 G 98 96 ? ? ? A . n A 1 99 A 99 97 ? ? ? A . n A 1 100 A 100 98 ? ? ? A . n A 1 101 G 101 99 99 G G A . n A 1 102 U 102 100 100 U U A . n A 1 103 A 103 101 101 A A A . n A 1 104 A 104 102 102 A A A . n A 1 105 G 105 103 103 G G A . n A 1 106 U 106 104 104 U U A . n A 1 107 C 107 105 105 C C A . n A 1 108 C 108 106 106 C C A . n A 1 109 U 109 107 107 U U A . n A 1 110 C 110 108 108 C C A . n A 1 111 C 111 109 109 C C A . n A 1 112 G 112 110 110 G G A . n A 1 113 G 113 111 111 G G A . n A 1 114 G 114 112 112 G G A . n A 1 115 A 115 113 113 A A A . n A 1 116 A 116 114 114 A A A . n A 1 117 A 117 115 115 A A A . n A 1 118 C 118 116 116 C C A . n A 1 119 U 119 117 117 U U A . n A 1 120 C 120 118 118 C C A . n A 1 121 G 121 119 119 G G A . n A 1 122 G 122 120 120 G G A . n A 1 123 G 123 121 121 G G A . n A 1 124 U 124 122 ? ? ? A . n A 1 125 U 125 123 ? ? ? A . n A 1 126 A 126 124 ? ? ? A . n A 1 127 A 127 125 ? ? ? A . n A 1 128 G 128 126 126 G G A . n A 1 129 G 129 127 127 G G A . n A 1 130 C 130 128 128 C C A . n A 1 131 A 131 129 129 A A A . n A 1 132 A 132 130 130 A A A . n A 1 133 G 133 131 131 G G A . n A 1 134 U 134 132 132 U U A . n A 1 135 G 135 133 133 G G A . n A 1 136 U 136 134 134 U U A . n A 1 137 G 137 135 135 G G A . n A 1 138 G 138 136 136 G G A . n A 1 139 G 139 137 137 G G A . n A 1 140 G 140 138 138 G G A . n A 1 141 U 141 139 139 U U A . n A 1 142 C 142 140 140 C C A . n A 1 143 A 143 141 141 A A A . n A 1 144 A 144 142 142 A A A . n A 1 145 A 145 143 143 A A A . n A 1 146 A 146 144 144 A A A . n A 1 147 A 147 145 145 A A A . n A 1 148 C 148 146 146 C C A . n A 1 149 C 149 147 147 C C A . n A 1 150 A 150 148 148 A A A . n A 1 151 G 151 149 149 G G A . n A 1 152 G 152 150 150 G G A . n A 1 153 U 153 151 151 U U A . n A 1 154 C 154 152 152 C C A . n A 1 155 G 155 153 153 G G A . n A 1 156 A 156 154 154 A A A . n A 1 157 G 157 155 155 G G A . n A 1 158 U 158 156 156 U U A . n A 1 159 G 159 157 157 G G A . n A 1 160 G 160 158 158 G G A . n A 1 161 C 161 159 159 C C A . n A 1 162 C 162 160 160 C C A . n A 1 163 U 163 161 161 U U A . n A 1 164 U 164 162 162 U U A . n A 1 165 G 165 163 163 G G A . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9E75 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9E75 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9E75 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9E75 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.50 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.004 ? 3734 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.630 ? 5821 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 22.968 ? 2307 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.034 ? 775 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 155 ? f_plane_restr ? ? ? # _struct.entry_id 9E75 _struct.title 'Cryo-EM structure of RaiA RNA from Mogibacterium pumilum' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9E75 _struct_keywords.text 'Non-coding RNA, cryo-EM, raiA motif RNA, ModT, RNA' _struct_keywords.pdbx_keywords RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code CP016199.1 _struct_ref.pdbx_db_accession 1229036016 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;UGUAAGGUCAUGUUCGUGGUUGAAAGUCCAAGCCAGCUACGGGCAAAGGGAUCCACGUAAGCUGCUGCGGAGACGGCAGU GAUCAUGGCGUAGCUUAGAAGUAAGUCCUCCGGGAAACUCGGGUUAAGGCAAGUGUGGGGUCAAAAACCAGGUCGAGUGG CCUUG ; _struct_ref.pdbx_align_begin 24440 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9E75 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 165 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1229036016 _struct_ref_seq.db_align_beg 24440 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 24276 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -1 _struct_ref_seq.pdbx_auth_seq_align_end 163 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 9E75 _struct_ref_seq_dif.mon_id G _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name GB _struct_ref_seq_dif.pdbx_seq_db_accession_code 1229036016 _struct_ref_seq_dif.db_mon_id U _struct_ref_seq_dif.pdbx_seq_db_seq_num 24440 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num -1 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 164 N3 ? ? A A 2 A U 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 164 O4 ? ? A A 2 A U 162 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 163 N3 ? ? A A 3 A U 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 163 O4 ? ? A A 3 A U 161 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 162 N3 ? ? A G 4 A C 160 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 162 O2 ? ? A G 4 A C 160 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 162 N4 ? ? A G 4 A C 160 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 161 N3 ? ? A G 5 A C 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 161 O2 ? ? A G 5 A C 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 161 N4 ? ? A G 5 A C 159 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 8 N3 ? ? ? 1_555 A G 160 O6 ? ? A U 6 A G 158 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog12 hydrog ? ? A U 8 O2 ? ? ? 1_555 A G 160 N1 ? ? A U 6 A G 158 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog13 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 159 N1 ? ? A C 7 A G 157 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 159 O6 ? ? A C 7 A G 157 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 159 N2 ? ? A C 7 A G 157 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 158 N3 ? ? A A 8 A U 156 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 158 O4 ? ? A A 8 A U 156 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 11 N3 ? ? ? 1_555 A G 157 O6 ? ? A U 9 A G 155 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog19 hydrog ? ? A U 11 O2 ? ? ? 1_555 A G 157 N1 ? ? A U 9 A G 155 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog20 hydrog ? ? A G 12 N1 ? ? ? 1_555 A G 16 O6 ? ? A G 10 A G 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A G 12 N2 ? ? ? 1_555 A G 16 N7 ? ? A G 10 A G 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 156 N1 ? ? A U 12 A A 154 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 156 N6 ? ? A U 12 A A 154 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 155 N1 ? ? A C 13 A G 153 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 155 O6 ? ? A C 13 A G 153 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 155 N2 ? ? A C 13 A G 153 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 154 N3 ? ? A G 14 A C 152 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 154 O2 ? ? A G 14 A C 152 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 154 N4 ? ? A G 14 A C 152 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 150 N1 ? ? A U 15 A A 148 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 17 O4 ? ? ? 1_555 A A 150 N6 ? ? A U 15 A A 148 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 149 N3 ? ? A G 16 A C 147 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 149 O2 ? ? A G 16 A C 147 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 149 N4 ? ? A G 16 A C 147 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 148 N3 ? ? A G 17 A C 146 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 148 O2 ? ? A G 17 A C 146 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 148 N4 ? ? A G 17 A C 146 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 20 N3 ? ? ? 1_555 A A 147 N1 ? ? A U 18 A A 145 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 20 O4 ? ? ? 1_555 A A 147 N6 ? ? A U 18 A A 145 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 21 N3 ? ? ? 1_555 A A 25 N7 ? ? A U 19 A A 23 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog41 hydrog ? ? A U 21 O2 ? ? ? 1_555 A A 25 N6 ? ? A U 19 A A 23 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog42 hydrog ? ? A G 22 N3 ? ? ? 1_555 A A 144 N6 ? ? A G 20 A A 142 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog43 hydrog ? ? A G 26 N1 ? ? ? 1_555 A U 52 O2 ? ? A G 24 A U 50 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog44 hydrog ? ? A G 26 O6 ? ? ? 1_555 A U 52 N3 ? ? A G 24 A U 50 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog45 hydrog ? ? A U 27 N3 ? ? ? 1_555 A A 51 N1 ? ? A U 25 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A U 27 O4 ? ? ? 1_555 A A 51 N6 ? ? A U 25 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 28 N3 ? ? ? 1_555 A G 50 N1 ? ? A C 26 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 28 N4 ? ? ? 1_555 A G 50 O6 ? ? A C 26 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 28 O2 ? ? ? 1_555 A G 50 N2 ? ? A C 26 A G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 29 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 27 A G 30 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog51 hydrog ? ? A C 29 N3 ? ? ? 1_555 A G 49 N1 ? ? A C 27 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 29 N4 ? ? ? 1_555 A G 49 O6 ? ? A C 27 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 29 O2 ? ? ? 1_555 A G 49 N2 ? ? A C 27 A G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A A 30 N1 ? ? ? 1_555 A C 44 N4 ? ? A A 28 A C 42 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog55 hydrog ? ? A A 30 N6 ? ? ? 1_555 A C 44 N3 ? ? A A 28 A C 42 1_555 ? ? ? ? ? ? TYPE_26_PAIR ? ? ? hydrog56 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 44 N3 ? ? A G 30 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 44 O2 ? ? A G 30 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 44 N4 ? ? A G 30 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 33 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 31 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 33 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 31 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 33 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 31 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 33 O2 ? ? ? 1_555 A G 49 N2 ? ? A C 31 A G 47 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog63 hydrog ? ? A C 34 N3 ? ? ? 1_555 A G 42 N1 ? ? A C 32 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 34 N4 ? ? ? 1_555 A G 42 O6 ? ? A C 32 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 34 O2 ? ? ? 1_555 A G 42 N2 ? ? A C 32 A G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 94 N3 ? ? A G 34 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 94 O2 ? ? A G 34 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 94 N4 ? ? A G 34 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 37 N3 ? ? ? 1_555 A G 93 N1 ? ? A C 35 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 37 N4 ? ? ? 1_555 A G 93 O6 ? ? A C 35 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 37 O2 ? ? ? 1_555 A G 93 N2 ? ? A C 35 A G 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A U 38 N3 ? ? ? 1_555 A A 92 N1 ? ? A U 36 A A 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A U 38 O4 ? ? ? 1_555 A A 92 N6 ? ? A U 36 A A 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 39 N1 ? ? ? 1_555 A U 91 N3 ? ? A A 37 A U 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A A 39 N6 ? ? ? 1_555 A U 91 O4 ? ? A A 37 A U 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 40 N3 ? ? ? 1_555 A G 90 N1 ? ? A C 38 A G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 90 O6 ? ? A C 38 A G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 40 O2 ? ? ? 1_555 A G 90 N2 ? ? A C 38 A G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 89 N3 ? ? A G 39 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 89 O2 ? ? A G 39 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 89 N4 ? ? A G 39 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A G 43 N2 ? ? ? 1_555 A G 49 N3 ? ? A G 41 A G 47 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog83 hydrog ? ? A A 46 N3 ? ? ? 1_555 A G 151 N2 ? ? A A 44 A G 149 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog84 hydrog ? ? A C 53 N3 ? ? ? 1_555 A G 138 N1 ? ? A C 51 A G 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A C 53 N4 ? ? ? 1_555 A G 138 O6 ? ? A C 51 A G 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A C 53 O2 ? ? ? 1_555 A G 138 N2 ? ? A C 51 A G 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A C 54 N3 ? ? ? 1_555 A G 137 N1 ? ? A C 52 A G 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A C 54 N4 ? ? ? 1_555 A G 137 O6 ? ? A C 52 A G 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A C 54 O2 ? ? ? 1_555 A G 137 N2 ? ? A C 52 A G 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A A 55 N1 ? ? ? 1_555 A U 136 N3 ? ? A A 53 A U 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A A 55 N6 ? ? ? 1_555 A U 136 O4 ? ? A A 53 A U 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A C 56 N3 ? ? ? 1_555 A G 135 N1 ? ? A C 54 A G 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A C 56 N4 ? ? ? 1_555 A G 135 O6 ? ? A C 54 A G 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A C 56 O2 ? ? ? 1_555 A G 135 N2 ? ? A C 54 A G 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A G 57 N2 ? ? ? 1_555 A U 83 O4 ? ? A G 55 A U 81 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog96 hydrog ? ? A U 58 N3 ? ? ? 1_555 A A 82 N7 ? ? A U 56 A A 80 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog97 hydrog ? ? A A 60 N6 ? ? ? 1_555 A G 81 N3 ? ? A A 58 A G 79 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog98 hydrog ? ? A A 60 N7 ? ? ? 1_555 A G 81 N2 ? ? A A 58 A G 79 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog99 hydrog ? ? A G 61 N1 ? ? ? 1_555 A U 80 O2 ? ? A G 59 A U 78 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog100 hydrog ? ? A G 61 O6 ? ? ? 1_555 A U 80 N3 ? ? A G 59 A U 78 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog101 hydrog ? ? A C 62 N3 ? ? ? 1_555 A G 79 N1 ? ? A C 60 A G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A C 62 N4 ? ? ? 1_555 A G 79 O6 ? ? A C 60 A G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A C 62 O2 ? ? ? 1_555 A G 79 N2 ? ? A C 60 A G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A U 63 N3 ? ? ? 1_555 A A 78 N1 ? ? A U 61 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A U 63 O4 ? ? ? 1_555 A A 78 N6 ? ? A U 61 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A G 64 N1 ? ? ? 1_555 A C 77 N3 ? ? A G 62 A C 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A G 64 N2 ? ? ? 1_555 A C 77 O2 ? ? A G 62 A C 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A G 64 O6 ? ? ? 1_555 A C 77 N4 ? ? A G 62 A C 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A C 65 N3 ? ? ? 1_555 A G 76 N1 ? ? A C 63 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A C 65 N4 ? ? ? 1_555 A G 76 O6 ? ? A C 63 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A C 65 O2 ? ? ? 1_555 A G 76 N2 ? ? A C 63 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A U 66 N3 ? ? ? 1_555 A G 75 O6 ? ? A U 64 A G 73 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog113 hydrog ? ? A U 66 O2 ? ? ? 1_555 A G 75 N1 ? ? A U 64 A G 73 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog114 hydrog ? ? A G 67 N1 ? ? ? 1_555 A C 74 N3 ? ? A G 65 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? A G 67 N2 ? ? ? 1_555 A C 74 O2 ? ? A G 65 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? A G 67 O6 ? ? ? 1_555 A C 74 N4 ? ? A G 65 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? A C 68 N3 ? ? ? 1_555 A A 73 N6 ? ? A C 66 A A 71 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog118 hydrog ? ? A G 69 N2 ? ? ? 1_555 A G 72 N7 ? ? A G 67 A G 70 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog119 hydrog ? ? A C 84 N4 ? ? ? 1_555 A G 135 O6 ? ? A C 82 A G 133 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog120 hydrog ? ? A C 84 N4 ? ? ? 1_555 A U 136 O4 ? ? A C 82 A U 134 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog121 hydrog ? ? A A 85 N7 ? ? ? 1_555 A G 139 N2 ? ? A A 83 A G 137 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog122 hydrog ? ? A G 87 N1 ? ? ? 1_555 A C 142 N3 ? ? A G 85 A C 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? A G 87 N2 ? ? ? 1_555 A C 142 O2 ? ? A G 85 A C 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? A G 87 O6 ? ? ? 1_555 A C 142 N4 ? ? A G 85 A C 140 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? A A 104 N3 ? ? ? 1_555 A G 129 N2 ? ? A A 102 A G 127 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog126 hydrog ? ? A G 105 N1 ? ? ? 1_555 A C 130 N3 ? ? A G 103 A C 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? A G 105 N2 ? ? ? 1_555 A C 130 O2 ? ? A G 103 A C 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? A G 105 O6 ? ? ? 1_555 A C 130 N4 ? ? A G 103 A C 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? A C 107 N3 ? ? ? 1_555 A G 129 N1 ? ? A C 105 A G 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? A C 107 N4 ? ? ? 1_555 A G 129 O6 ? ? A C 105 A G 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? A C 107 O2 ? ? ? 1_555 A G 129 N2 ? ? A C 105 A G 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? A C 108 N3 ? ? ? 1_555 A G 128 N1 ? ? A C 106 A G 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? A C 108 N4 ? ? ? 1_555 A G 128 O6 ? ? A C 106 A G 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? A C 108 O2 ? ? ? 1_555 A G 128 N2 ? ? A C 106 A G 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? A U 109 O2 ? ? ? 1_555 A G 128 N2 ? ? A U 107 A G 126 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog136 hydrog ? ? A C 110 N3 ? ? ? 1_555 A G 122 N1 ? ? A C 108 A G 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog137 hydrog ? ? A C 110 N4 ? ? ? 1_555 A G 122 O6 ? ? A C 108 A G 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog138 hydrog ? ? A C 110 O2 ? ? ? 1_555 A G 122 N2 ? ? A C 108 A G 120 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? A C 111 N3 ? ? ? 1_555 A G 121 N1 ? ? A C 109 A G 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? A C 111 N4 ? ? ? 1_555 A G 121 O6 ? ? A C 109 A G 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog141 hydrog ? ? A C 111 O2 ? ? ? 1_555 A G 121 N2 ? ? A C 109 A G 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? A G 112 N1 ? ? ? 1_555 A C 120 N3 ? ? A G 110 A C 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? A G 112 N2 ? ? ? 1_555 A C 120 O2 ? ? A G 110 A C 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog144 hydrog ? ? A G 112 O6 ? ? ? 1_555 A C 120 N4 ? ? A G 110 A C 118 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog145 hydrog ? ? A G 113 N1 ? ? ? 1_555 A C 118 N3 ? ? A G 111 A C 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog146 hydrog ? ? A G 113 N2 ? ? ? 1_555 A C 118 O2 ? ? A G 111 A C 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog147 hydrog ? ? A G 113 O6 ? ? ? 1_555 A C 118 N4 ? ? A G 111 A C 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog148 hydrog ? ? A G 114 N2 ? ? ? 1_555 A A 117 N7 ? ? A G 112 A A 115 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog149 hydrog ? ? A G 140 N2 ? ? ? 1_555 A A 145 N1 ? ? A G 138 A A 143 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog150 hydrog ? ? A G 140 N3 ? ? ? 1_555 A A 145 N6 ? ? A G 138 A A 143 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 9E75 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9E75 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9E75 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.5 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 343947 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'RaiA RNA from Mogibacterium pumilum' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9E75 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9E75 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE-PROPANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9E75 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A G -1 ? A G 1 2 1 Y 1 A G 0 ? A G 2 3 1 Y 1 A A 95 ? A A 97 4 1 Y 1 A G 96 ? A G 98 5 1 Y 1 A A 97 ? A A 99 6 1 Y 1 A A 98 ? A A 100 7 1 Y 1 A U 122 ? A U 124 8 1 Y 1 A U 123 ? A U 125 9 1 Y 1 A A 124 ? A A 126 10 1 Y 1 A A 125 ? A A 127 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # _em_admin.current_status REL _em_admin.deposition_date 2024-10-31 _em_admin.deposition_site RCSB _em_admin.entry_id 9E75 _em_admin.last_update 2025-12-03 _em_admin.map_release_date 2025-11-05 _em_admin.title 'Cryo-EM structure of RaiA RNA from Mogibacterium pumilum' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 86332 _em_entity_assembly_naturalsource.organism 'Mogibacterium pumilum' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? Topaz ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? PHENIX ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9E75 'double helix' 9E75 'a-form double helix' 9E75 'hairpin loop' 9E75 tetraloop 9E75 'bulge loop' 9E75 'mismatched base pair' 9E75 'triple helix' 9E75 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 4 1_555 A U 164 1_555 0.109 -0.198 -0.894 -10.633 -0.322 -1.058 1 A_A2:U162_A A 2 ? A 162 ? 20 1 1 A A 5 1_555 A U 163 1_555 0.171 -0.279 -0.934 -6.147 3.571 -4.037 2 A_A3:U161_A A 3 ? A 161 ? 20 1 1 A G 6 1_555 A C 162 1_555 -0.174 -0.178 -0.415 -5.215 5.762 -1.588 3 A_G4:C160_A A 4 ? A 160 ? 19 1 1 A G 7 1_555 A C 161 1_555 -0.157 -0.153 -0.214 -2.827 8.084 -1.862 4 A_G5:C159_A A 5 ? A 159 ? 19 1 1 A U 8 1_555 A G 160 1_555 1.890 -0.371 -0.150 1.800 12.506 -2.531 5 A_U6:G158_A A 6 ? A 158 ? 28 1 1 A C 9 1_555 A G 159 1_555 0.171 -0.160 -0.338 -6.537 -0.883 -1.456 6 A_C7:G157_A A 7 ? A 157 ? 19 1 1 A A 10 1_555 A U 158 1_555 0.082 -0.128 0.542 -1.383 -2.988 -4.507 7 A_A8:U156_A A 8 ? A 156 ? 20 1 1 A U 11 1_555 A G 157 1_555 2.316 -0.576 1.016 0.261 -1.693 -8.444 8 A_U9:G155_A A 9 ? A 155 ? 28 1 1 A U 14 1_555 A A 156 1_555 -0.170 -0.062 -0.358 2.034 5.196 -2.895 9 A_U12:A154_A A 12 ? A 154 ? 20 1 1 A C 15 1_555 A G 155 1_555 0.147 -0.123 -0.110 12.660 11.669 0.965 10 A_C13:G153_A A 13 ? A 153 ? 19 1 1 A G 16 1_555 A C 154 1_555 -0.220 -0.155 -0.224 3.629 -2.248 -1.358 11 A_G14:C152_A A 14 ? A 152 ? 19 1 1 A A 46 1_555 A G 151 1_555 2.708 6.899 -2.105 61.162 -0.209 145.473 12 A_A44:G149_A A 44 ? A 149 ? ? 6 1 A U 17 1_555 A A 150 1_555 -0.113 0.019 -0.645 0.760 1.432 -3.001 13 A_U15:A148_A A 15 ? A 148 ? 20 1 1 A G 18 1_555 A C 149 1_555 -0.189 -0.110 0.336 1.555 5.438 0.436 14 A_G16:C147_A A 16 ? A 147 ? 19 1 1 A G 19 1_555 A C 148 1_555 -0.227 -0.182 0.818 4.043 4.704 1.062 15 A_G17:C146_A A 17 ? A 146 ? 19 1 1 A U 20 1_555 A A 147 1_555 -0.125 -0.098 0.739 -0.051 9.341 -3.092 16 A_U18:A145_A A 18 ? A 145 ? 20 1 1 A U 21 1_555 A A 25 1_555 3.958 -0.840 0.177 8.413 1.125 -103.885 17 A_U19:A23_A A 19 ? A 23 ? 24 4 1 A G 22 1_555 A A 144 1_555 7.020 -3.737 -1.343 33.045 37.877 7.572 18 A_G20:A142_A A 20 ? A 142 ? ? 6 1 A G 26 1_555 A U 52 1_555 -2.251 -0.482 0.187 -3.214 -5.503 -7.901 19 A_G24:U50_A A 24 ? A 50 ? 28 1 1 A U 27 1_555 A A 51 1_555 -0.040 -0.094 0.017 -5.671 -6.918 -0.407 20 A_U25:A49_A A 25 ? A 49 ? 20 1 1 A C 28 1_555 A G 50 1_555 0.201 -0.112 0.233 -5.451 -3.922 -1.295 21 A_C26:G48_A A 26 ? A 48 ? 19 1 1 A C 29 1_555 A G 49 1_555 0.256 -0.091 0.174 0.218 -1.196 -1.562 22 A_C27:G47_A A 27 ? A 47 ? 19 1 1 A G 32 1_555 A C 44 1_555 -0.181 -0.219 0.993 -2.802 5.628 2.022 23 A_G30:C42_A A 30 ? A 42 ? 19 1 1 A C 33 1_555 A G 43 1_555 0.214 -0.128 0.168 2.174 4.420 -2.307 24 A_C31:G41_A A 31 ? A 41 ? 19 1 1 A C 34 1_555 A G 42 1_555 0.266 -0.143 0.450 2.500 4.845 2.418 25 A_C32:G40_A A 32 ? A 40 ? 19 1 1 A C 89 1_555 A G 41 1_555 0.237 -0.070 -0.336 5.618 -3.707 1.955 26 A_C87:G39_A A 87 ? A 39 ? 19 1 1 A G 90 1_555 A C 40 1_555 -0.254 -0.159 0.371 -5.928 9.775 -0.496 27 A_G88:C38_A A 88 ? A 38 ? 19 1 1 A U 91 1_555 A A 39 1_555 -0.070 -0.112 0.704 -2.677 9.161 -3.075 28 A_U89:A37_A A 89 ? A 37 ? 20 1 1 A A 92 1_555 A U 38 1_555 0.175 -0.036 0.480 4.387 5.050 -2.072 29 A_A90:U36_A A 90 ? A 36 ? 20 1 1 A G 93 1_555 A C 37 1_555 -0.172 -0.087 0.253 4.785 0.656 1.145 30 A_G91:C35_A A 91 ? A 35 ? 19 1 1 A C 94 1_555 A G 36 1_555 0.189 -0.080 -0.223 7.219 -2.823 -1.017 31 A_C92:G34_A A 92 ? A 34 ? 19 1 1 A G 72 1_555 A G 69 1_555 -6.938 -5.476 0.944 -34.413 24.803 -30.815 32 A_G70:G67_A A 70 ? A 67 ? ? ? 1 A A 73 1_555 A C 68 1_555 -3.102 -0.537 1.121 2.548 38.492 -17.123 33 A_A71:C66_A A 71 ? A 66 ? ? 1 1 A C 74 1_555 A G 67 1_555 0.114 -0.115 -0.610 20.603 12.890 -2.831 34 A_C72:G65_A A 72 ? A 65 ? 19 1 1 A G 75 1_555 A U 66 1_555 -2.984 -0.627 0.307 -2.420 0.885 1.522 35 A_G73:U64_A A 73 ? A 64 ? 28 1 1 A G 76 1_555 A C 65 1_555 -0.232 -0.136 0.288 -0.393 1.543 1.171 36 A_G74:C63_A A 74 ? A 63 ? 19 1 1 A C 77 1_555 A G 64 1_555 0.185 -0.168 0.225 3.106 -1.242 -2.680 37 A_C75:G62_A A 75 ? A 62 ? 19 1 1 A A 78 1_555 A U 63 1_555 0.037 -0.060 -0.036 5.989 8.113 0.845 38 A_A76:U61_A A 76 ? A 61 ? 20 1 1 A G 79 1_555 A C 62 1_555 -0.174 -0.208 -0.726 8.671 2.026 -1.661 39 A_G77:C60_A A 77 ? A 60 ? 19 1 1 A U 80 1_555 A G 61 1_555 2.103 -0.407 -1.556 15.883 -6.340 -1.994 40 A_U78:G59_A A 78 ? A 59 ? 28 1 1 A G 81 1_555 A A 60 1_555 6.498 -4.101 -1.423 8.229 -13.447 -4.991 41 A_G79:A58_A A 79 ? A 58 ? 11 10 1 A A 82 1_555 A U 58 1_555 -4.065 -0.815 -2.271 7.300 -8.245 -113.311 42 A_A80:U56_A A 80 ? A 56 ? ? ? 1 A U 83 1_555 A G 57 1_555 -1.374 -0.394 0.602 27.322 -7.507 164.994 43 A_U81:G55_A A 81 ? A 55 ? ? ? 1 A G 135 1_555 A C 56 1_555 -0.270 -0.244 0.852 -0.575 2.807 -0.563 44 A_G133:C54_A A 133 ? A 54 ? 19 1 1 A U 136 1_555 A A 55 1_555 -0.101 -0.092 0.645 -4.595 8.554 2.537 45 A_U134:A53_A A 134 ? A 53 ? 20 1 1 A G 137 1_555 A C 54 1_555 -0.271 -0.187 0.514 0.208 10.005 0.622 46 A_G135:C52_A A 135 ? A 52 ? 19 1 1 A G 138 1_555 A C 53 1_555 -0.309 -0.133 0.414 0.883 9.168 0.920 47 A_G136:C51_A A 136 ? A 51 ? 19 1 1 A G 139 1_555 A A 85 1_555 8.672 -4.530 -0.139 -0.865 7.310 -65.109 48 A_G137:A83_A A 137 ? A 83 ? ? ? 1 A G 140 1_555 A A 145 1_555 3.030 -4.169 -0.334 12.661 10.043 -70.878 49 A_G138:A143_A A 138 ? A 143 ? 10 6 1 A G 87 1_555 A C 142 1_555 -0.251 -0.160 -0.963 -4.497 -7.552 5.592 50 A_G85:C140_A A 85 ? A 140 ? 19 1 1 A G 105 1_555 A C 130 1_555 -0.140 -0.129 -0.439 -1.803 4.790 0.383 51 A_G103:C128_A A 103 ? A 128 ? 19 1 1 A C 107 1_555 A G 129 1_555 0.209 -0.129 0.270 -0.751 1.777 1.362 52 A_C105:G127_A A 105 ? A 127 ? 19 1 1 A C 108 1_555 A G 128 1_555 0.122 -0.199 -0.940 13.319 0.042 -1.572 53 A_C106:G126_A A 106 ? A 126 ? 19 1 1 A C 110 1_555 A G 122 1_555 0.225 -0.200 0.339 1.131 10.462 0.803 54 A_C108:G120_A A 108 ? A 120 ? 19 1 1 A C 111 1_555 A G 121 1_555 0.272 -0.201 0.383 8.530 6.808 1.774 55 A_C109:G119_A A 109 ? A 119 ? 19 1 1 A G 112 1_555 A C 120 1_555 -0.202 -0.038 -0.708 -31.731 -8.166 -1.024 56 A_G110:C118_A A 110 ? A 118 ? 19 1 1 A G 113 1_555 A C 118 1_555 -0.005 -0.448 -1.570 -12.911 6.695 -6.423 57 A_G111:C116_A A 111 ? A 116 ? 19 1 1 A G 114 1_555 A A 117 1_555 7.805 -4.902 0.956 16.766 4.647 -48.978 58 A_G112:A115_A A 112 ? A 115 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 4 1_555 A U 164 1_555 A A 5 1_555 A U 163 1_555 -0.432 -1.075 3.550 -1.740 3.911 29.082 -3.016 0.452 3.399 7.735 3.441 29.389 1 AA_A2A3:U161U162_AA A 2 ? A 162 ? A 3 ? A 161 ? 1 A A 5 1_555 A U 163 1_555 A G 6 1_555 A C 162 1_555 0.859 -1.600 3.153 -1.844 4.779 34.284 -3.365 -1.705 2.862 8.052 3.107 34.653 2 AA_A3G4:C160U161_AA A 3 ? A 161 ? A 4 ? A 160 ? 1 A G 6 1_555 A C 162 1_555 A G 7 1_555 A C 161 1_555 0.037 -1.967 3.022 -1.010 4.231 30.272 -4.470 -0.248 2.725 8.049 1.922 30.576 3 AA_G4G5:C159C160_AA A 4 ? A 160 ? A 5 ? A 159 ? 1 A G 7 1_555 A C 161 1_555 A U 8 1_555 A G 160 1_555 0.640 -1.611 3.108 0.605 4.478 41.711 -2.682 -0.836 2.936 6.267 -0.847 41.944 4 AA_G5U6:G158C159_AA A 5 ? A 159 ? A 6 ? A 158 ? 1 A U 8 1_555 A G 160 1_555 A C 9 1_555 A G 159 1_555 -0.136 -2.073 3.051 9.486 17.819 30.806 -5.173 1.217 1.558 29.862 -15.897 36.697 5 AA_U6C7:G157G158_AA A 6 ? A 158 ? A 7 ? A 157 ? 1 A C 9 1_555 A G 159 1_555 A A 10 1_555 A U 158 1_555 -0.280 -1.690 2.832 -5.617 5.521 30.519 -3.969 -0.354 2.506 10.275 10.454 31.495 6 AA_C7A8:U156G157_AA A 7 ? A 157 ? A 8 ? A 156 ? 1 A A 10 1_555 A U 158 1_555 A U 11 1_555 A G 157 1_555 -0.271 -1.508 3.375 -1.448 1.405 39.912 -2.372 0.227 3.329 2.057 2.119 39.961 7 AA_A8U9:G155U156_AA A 8 ? A 156 ? A 9 ? A 155 ? 1 A U 11 1_555 A G 157 1_555 A U 14 1_555 A A 156 1_555 -2.087 -1.887 2.363 0.929 15.247 41.505 -3.402 2.833 1.564 20.691 -1.260 44.110 8 AA_U9U12:A154G155_AA A 9 ? A 155 ? A 12 ? A 154 ? 1 A U 14 1_555 A A 156 1_555 A C 15 1_555 A G 155 1_555 0.352 -2.379 3.464 3.366 2.577 26.580 -5.794 0.134 3.242 5.561 -7.262 26.910 9 AA_U12C13:G153A154_AA A 12 ? A 154 ? A 13 ? A 153 ? 1 A C 15 1_555 A G 155 1_555 A G 16 1_555 A C 154 1_555 -1.202 -1.713 3.959 0.705 3.024 27.130 -4.515 2.752 3.718 6.420 -1.496 27.304 10 AA_C13G14:C152G153_AA A 13 ? A 153 ? A 14 ? A 152 ? 1 A A 46 1_555 A G 151 1_555 A U 17 1_555 A A 150 1_555 -3.068 -2.117 1.945 66.937 -128.976 115.693 -0.592 1.802 1.907 -66.737 -34.635 161.743 11 AA_A44U15:A148G149_AA A 44 ? A 149 ? A 15 ? A 148 ? 1 A U 17 1_555 A A 150 1_555 A G 18 1_555 A C 149 1_555 0.469 -1.908 3.194 -3.059 9.272 29.462 -5.147 -1.398 2.435 17.632 5.818 31.004 12 AA_U15G16:C147A148_AA A 15 ? A 148 ? A 16 ? A 147 ? 1 A G 18 1_555 A C 149 1_555 A G 19 1_555 A C 148 1_555 1.155 -2.134 3.115 0.454 4.990 30.364 -4.904 -2.097 2.754 9.445 -0.859 30.765 13 AA_G16G17:C146C147_AA A 16 ? A 147 ? A 17 ? A 146 ? 1 A G 19 1_555 A C 148 1_555 A U 20 1_555 A A 147 1_555 -0.525 -2.415 3.228 -0.735 2.622 34.601 -4.434 0.772 3.052 4.401 1.233 34.704 14 AA_G17U18:A145C146_AA A 17 ? A 146 ? A 18 ? A 145 ? 1 A U 20 1_555 A A 147 1_555 A U 21 1_555 A A 25 1_555 -3.500 -2.032 2.939 10.258 11.269 81.060 -1.772 2.868 2.313 8.602 -7.830 82.236 15 AA_U18U19:A23A145_AA A 18 ? A 145 ? A 19 ? A 23 ? 1 A U 21 1_555 A A 25 1_555 A G 22 1_555 A A 144 1_555 1.932 -0.482 2.782 -5.649 -14.748 -5.584 10.577 3.219 1.158 65.974 -25.270 -16.745 16 AA_U19G20:A142A23_AA A 19 ? A 23 ? A 20 ? A 142 ? 1 A G 26 1_555 A U 52 1_555 A U 27 1_555 A A 51 1_555 -0.286 -1.544 3.522 -6.183 8.049 44.731 -2.714 -0.194 3.223 10.418 8.003 45.810 17 AA_G24U25:A49U50_AA A 24 ? A 50 ? A 25 ? A 49 ? 1 A U 27 1_555 A A 51 1_555 A C 28 1_555 A G 50 1_555 -0.249 -1.285 3.466 -1.579 4.317 35.165 -2.767 0.169 3.298 7.108 2.600 35.455 18 AA_U25C26:G48A49_AA A 25 ? A 49 ? A 26 ? A 48 ? 1 A C 28 1_555 A G 50 1_555 A C 29 1_555 A G 49 1_555 -1.043 -1.758 3.406 -1.302 8.173 23.567 -6.414 2.039 2.705 19.265 3.069 24.958 19 AA_C26C27:G47G48_AA A 26 ? A 48 ? A 27 ? A 47 ? 1 A G 32 1_555 A C 44 1_555 A C 33 1_555 A G 43 1_555 -0.593 -1.653 3.523 0.286 6.736 35.022 -3.707 1.012 3.156 11.067 -0.470 35.645 20 AA_G30C31:G41C42_AA A 30 ? A 42 ? A 31 ? A 41 ? 1 A C 33 1_555 A G 43 1_555 A C 34 1_555 A G 42 1_555 1.194 -2.242 3.236 -0.728 5.238 29.477 -5.342 -2.450 2.776 10.190 1.416 29.938 21 AA_C31C32:G40G41_AA A 31 ? A 41 ? A 32 ? A 40 ? 1 A C 34 1_555 A G 42 1_555 A C 89 1_555 A G 41 1_555 -2.205 -1.028 3.114 6.597 1.727 49.859 -1.322 3.022 2.785 2.038 -7.784 50.293 22 AA_C32C87:G39G40_AA A 32 ? A 40 ? A 87 ? A 39 ? 1 A C 89 1_555 A G 41 1_555 A G 90 1_555 A C 40 1_555 -0.836 -2.081 3.116 -7.319 13.461 34.371 -4.759 0.470 2.296 21.505 11.692 37.538 23 AA_C87G88:C38G39_AA A 87 ? A 39 ? A 88 ? A 38 ? 1 A G 90 1_555 A C 40 1_555 A U 91 1_555 A A 39 1_555 -0.566 -1.924 3.165 -2.569 5.061 30.415 -4.516 0.600 2.852 9.542 4.843 30.928 24 AA_G88U89:A37C38_AA A 88 ? A 38 ? A 89 ? A 37 ? 1 A U 91 1_555 A A 39 1_555 A A 92 1_555 A U 38 1_555 0.340 -1.869 2.874 2.314 8.434 34.615 -4.049 -0.281 2.384 13.901 -3.815 35.670 25 AA_U89A90:U36A37_AA A 89 ? A 37 ? A 90 ? A 36 ? 1 A A 92 1_555 A U 38 1_555 A G 93 1_555 A C 37 1_555 1.071 -2.149 3.064 3.192 2.535 29.236 -4.719 -1.473 2.969 4.992 -6.285 29.512 26 AA_A90G91:C35U36_AA A 90 ? A 36 ? A 91 ? A 35 ? 1 A G 93 1_555 A C 37 1_555 A C 94 1_555 A G 36 1_555 -0.337 -2.014 3.318 4.190 -0.466 33.228 -3.417 1.283 3.280 -0.810 -7.290 33.487 27 AA_G91C92:G34C35_AA A 91 ? A 35 ? A 92 ? A 34 ? 1 A G 72 1_555 A G 69 1_555 A A 73 1_555 A C 68 1_555 0.641 -1.099 2.442 -2.800 2.610 48.685 -1.474 -0.932 2.345 3.160 3.390 48.826 28 AA_G70A71:C66G67_AA A 70 ? A 67 ? A 71 ? A 66 ? 1 A A 73 1_555 A C 68 1_555 A C 74 1_555 A G 67 1_555 1.680 -1.589 3.028 5.636 8.051 40.173 -3.044 -1.828 2.871 11.513 -8.061 41.309 29 AA_A71C72:G65C66_AA A 71 ? A 66 ? A 72 ? A 65 ? 1 A C 74 1_555 A G 67 1_555 A G 75 1_555 A U 66 1_555 1.320 -2.408 3.439 -5.875 11.165 22.268 -8.101 -4.382 1.664 26.362 13.872 25.554 30 AA_C72G73:U64G65_AA A 72 ? A 65 ? A 73 ? A 64 ? 1 A G 75 1_555 A U 66 1_555 A G 76 1_555 A C 65 1_555 -0.607 -1.751 3.062 -2.268 2.474 44.016 -2.545 0.610 2.990 3.295 3.021 44.138 31 AA_G73G74:C63U64_AA A 73 ? A 64 ? A 74 ? A 63 ? 1 A G 76 1_555 A C 65 1_555 A C 77 1_555 A G 64 1_555 -0.057 -1.647 3.081 1.458 2.265 36.884 -2.880 0.272 2.974 3.574 -2.301 36.979 32 AA_G74C75:G62C63_AA A 74 ? A 63 ? A 75 ? A 62 ? 1 A C 77 1_555 A G 64 1_555 A A 78 1_555 A U 63 1_555 -0.315 -1.690 2.860 0.138 15.964 29.071 -4.987 0.570 1.722 29.192 -0.253 33.083 33 AA_C75A76:U61G62_AA A 75 ? A 62 ? A 76 ? A 61 ? 1 A A 78 1_555 A U 63 1_555 A G 79 1_555 A C 62 1_555 -0.194 -1.885 3.047 3.441 6.685 28.409 -4.959 1.021 2.507 13.329 -6.860 29.368 34 AA_A76G77:C60U61_AA A 76 ? A 61 ? A 77 ? A 60 ? 1 A G 79 1_555 A C 62 1_555 A U 80 1_555 A G 61 1_555 0.372 -1.081 3.206 9.070 1.919 40.365 -1.732 0.431 3.161 2.738 -12.939 41.372 35 AA_G77U78:G59C60_AA A 77 ? A 60 ? A 78 ? A 59 ? 1 A U 80 1_555 A G 61 1_555 A G 81 1_555 A A 60 1_555 -0.319 -0.558 4.546 9.871 2.400 54.566 -0.794 1.140 4.406 2.593 -10.663 55.432 36 AA_U78G79:A58G59_AA A 78 ? A 59 ? A 79 ? A 58 ? 1 A G 81 1_555 A A 60 1_555 A A 82 1_555 A U 58 1_555 -2.882 -0.630 6.615 -1.217 47.540 16.578 -7.641 3.221 1.725 71.858 1.839 50.204 37 AA_G79A80:U56A58_AA A 79 ? A 58 ? A 80 ? A 56 ? 1 A A 82 1_555 A U 58 1_555 A U 83 1_555 A G 57 1_555 0.108 -3.513 3.396 -175.105 19.457 -124.052 1.665 -0.766 3.232 -9.753 -87.774 -178.210 38 AA_A80U81:G55U56_AA A 80 ? A 56 ? A 81 ? A 55 ? 1 A U 83 1_555 A G 57 1_555 A G 135 1_555 A C 56 1_555 -2.161 -2.062 -1.860 64.339 -134.467 24.446 -1.578 0.875 0.497 -78.161 -37.398 149.785 39 AA_U81G133:C54G55_AA A 81 ? A 55 ? A 133 ? A 54 ? 1 A G 135 1_555 A C 56 1_555 A U 136 1_555 A A 55 1_555 -0.606 -2.400 3.416 -3.807 3.801 33.381 -4.751 0.418 3.179 6.564 6.574 33.800 40 AA_G133U134:A53C54_AA A 133 ? A 54 ? A 134 ? A 53 ? 1 A U 136 1_555 A A 55 1_555 A G 137 1_555 A C 54 1_555 -0.791 -2.168 2.614 -1.111 7.826 33.817 -4.511 1.202 2.099 13.230 1.879 34.703 41 AA_U134G135:C52A53_AA A 134 ? A 53 ? A 135 ? A 52 ? 1 A G 137 1_555 A C 54 1_555 A G 138 1_555 A C 53 1_555 0.305 -2.505 3.031 -1.408 7.925 29.916 -5.960 -0.796 2.291 15.012 2.666 30.956 42 AA_G135G136:C51C52_AA A 135 ? A 52 ? A 136 ? A 51 ? 1 A G 138 1_555 A C 53 1_555 A G 139 1_555 A A 85 1_555 -3.219 -2.320 3.186 10.832 3.258 83.044 -1.810 2.650 2.752 2.447 -8.137 83.672 43 AA_G136G137:A83C51_AA A 136 ? A 51 ? A 137 ? A 83 ? 1 A G 139 1_555 A A 85 1_555 A G 140 1_555 A A 145 1_555 0.080 -1.035 3.318 5.813 -3.292 22.156 -1.387 1.908 3.346 -8.327 -14.702 23.129 44 AA_G137G138:A143A83_AA A 137 ? A 83 ? A 138 ? A 143 ? 1 A G 87 1_555 A C 142 1_555 A G 105 1_555 A C 130 1_555 -6.673 -2.736 0.346 39.985 -164.295 -21.895 1.113 -3.415 -0.994 86.438 21.037 -169.290 45 AA_G85G103:C128C140_AA A 85 ? A 140 ? A 103 ? A 128 ? 1 A G 105 1_555 A C 130 1_555 A C 107 1_555 A G 129 1_555 2.114 -3.524 3.450 -3.724 1.577 8.587 -24.015 -19.189 1.710 9.846 23.249 9.490 46 AA_G103C105:G127C128_AA A 103 ? A 128 ? A 105 ? A 127 ? 1 A C 107 1_555 A G 129 1_555 A C 108 1_555 A G 128 1_555 -1.007 -1.509 2.932 5.904 2.110 34.670 -2.764 2.419 2.636 3.505 -9.808 35.215 47 AA_C105C106:G126G127_AA A 105 ? A 127 ? A 106 ? A 126 ? 1 A C 110 1_555 A G 122 1_555 A C 111 1_555 A G 121 1_555 1.148 -1.929 2.997 0.732 6.513 34.895 -3.993 -1.791 2.628 10.744 -1.208 35.487 48 AA_C108C109:G119G120_AA A 108 ? A 120 ? A 109 ? A 119 ? 1 A C 111 1_555 A G 121 1_555 A G 112 1_555 A C 120 1_555 0.371 -2.526 3.649 12.775 35.823 34.101 -5.096 0.331 0.859 46.727 -16.664 50.657 49 AA_C109G110:C118G119_AA A 109 ? A 119 ? A 110 ? A 118 ? 1 A G 112 1_555 A C 120 1_555 A G 113 1_555 A C 118 1_555 0.897 -1.432 4.723 -24.621 6.107 40.488 -2.449 -3.819 3.437 7.955 32.069 47.494 50 AA_G110G111:C116C118_AA A 110 ? A 118 ? A 111 ? A 116 ? 1 A G 113 1_555 A C 118 1_555 A G 114 1_555 A A 117 1_555 -4.178 -1.504 2.556 -9.496 9.120 62.672 -1.752 3.602 2.876 8.666 9.023 63.902 51 AA_G111G112:A115C116_AA A 111 ? A 116 ? A 112 ? A 115 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R35GM131901 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R01GM071940 2 # _atom_sites.entry_id 9E75 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P # loop_ #