data_9E7J # _entry.id 9E7J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9E7J pdb_00009e7j 10.2210/pdb9e7j/pdb WWPDB D_1000289720 ? ? EMDB EMD-47678 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-05-07 ? 2 'Structure model' 1 1 2025-07-23 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' 6 2 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9E7J _pdbx_database_status.recvd_initial_deposition_date 2024-11-01 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cu-bound tetrameric copper storage protein 1 with anti-rhodopsin 1D4 epitope' _pdbx_database_related.db_id EMD-47678 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email farrensd@ohsu.edu _pdbx_contact_author.name_first David _pdbx_contact_author.name_last Farrens _pdbx_contact_author.name_mi L. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-2761-4769 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yao, Y.' 1 0000-0002-0684-8438 'Oken, A.C.' 2 0000-0002-8661-9888 'Farrens, D.L.' 3 0000-0003-2761-4769 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biophys.J. _citation.journal_id_ASTM BIOJAU _citation.journal_id_CSD 0030 _citation.journal_id_ISSN 1542-0086 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 124 _citation.language ? _citation.page_first 1414 _citation.page_last 1423 _citation.title ;A novel "bio-tag" for cryo-EM studies based on the small, electron-dense protein Csp1. ; _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.bpj.2025.03.018 _citation.pdbx_database_id_PubMed 40620219 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yao, W.' 1 ? primary 'Oken, A.C.' 2 ? primary 'Farrens, D.L.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Four-helix bundle copper-binding protein' _entity.formula_weight 11321.135 _entity.pdbx_number_of_molecules 4 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAKYKALLDSSSHCVAVGEDCLRHCFEMLAMNDASMGACTKATYDLVAACGALAKLAGTNSAFTPAFAKVVADVCAACKK ECDKFPSIAECKACGEACQACAEECHKVAA ; _entity_poly.pdbx_seq_one_letter_code_can ;GAKYKALLDSSSHCVAVGEDCLRHCFEMLAMNDASMGACTKATYDLVAACGALAKLAGTNSAFTPAFAKVVADVCAACKK ECDKFPSIAECKACGEACQACAEECHKVAA ; _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 LYS n 1 4 TYR n 1 5 LYS n 1 6 ALA n 1 7 LEU n 1 8 LEU n 1 9 ASP n 1 10 SER n 1 11 SER n 1 12 SER n 1 13 HIS n 1 14 CYS n 1 15 VAL n 1 16 ALA n 1 17 VAL n 1 18 GLY n 1 19 GLU n 1 20 ASP n 1 21 CYS n 1 22 LEU n 1 23 ARG n 1 24 HIS n 1 25 CYS n 1 26 PHE n 1 27 GLU n 1 28 MET n 1 29 LEU n 1 30 ALA n 1 31 MET n 1 32 ASN n 1 33 ASP n 1 34 ALA n 1 35 SER n 1 36 MET n 1 37 GLY n 1 38 ALA n 1 39 CYS n 1 40 THR n 1 41 LYS n 1 42 ALA n 1 43 THR n 1 44 TYR n 1 45 ASP n 1 46 LEU n 1 47 VAL n 1 48 ALA n 1 49 ALA n 1 50 CYS n 1 51 GLY n 1 52 ALA n 1 53 LEU n 1 54 ALA n 1 55 LYS n 1 56 LEU n 1 57 ALA n 1 58 GLY n 1 59 THR n 1 60 ASN n 1 61 SER n 1 62 ALA n 1 63 PHE n 1 64 THR n 1 65 PRO n 1 66 ALA n 1 67 PHE n 1 68 ALA n 1 69 LYS n 1 70 VAL n 1 71 VAL n 1 72 ALA n 1 73 ASP n 1 74 VAL n 1 75 CYS n 1 76 ALA n 1 77 ALA n 1 78 CYS n 1 79 LYS n 1 80 LYS n 1 81 GLU n 1 82 CYS n 1 83 ASP n 1 84 LYS n 1 85 PHE n 1 86 PRO n 1 87 SER n 1 88 ILE n 1 89 ALA n 1 90 GLU n 1 91 CYS n 1 92 LYS n 1 93 ALA n 1 94 CYS n 1 95 GLY n 1 96 GLU n 1 97 ALA n 1 98 CYS n 1 99 GLN n 1 100 ALA n 1 101 CYS n 1 102 ALA n 1 103 GLU n 1 104 GLU n 1 105 CYS n 1 106 HIS n 1 107 LYS n 1 108 VAL n 1 109 ALA n 1 110 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 110 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CQW49_12740 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methylosinus trichosporium OB3b' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 595536 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 13 13 GLY GLY A . n A 1 2 ALA 2 14 14 ALA ALA A . n A 1 3 LYS 3 15 15 LYS LYS A . n A 1 4 TYR 4 16 16 TYR TYR A . n A 1 5 LYS 5 17 17 LYS LYS A . n A 1 6 ALA 6 18 18 ALA ALA A . n A 1 7 LEU 7 19 19 LEU LEU A . n A 1 8 LEU 8 20 20 LEU LEU A . n A 1 9 ASP 9 21 21 ASP ASP A . n A 1 10 SER 10 22 22 SER SER A . n A 1 11 SER 11 23 23 SER SER A . n A 1 12 SER 12 24 24 SER SER A . n A 1 13 HIS 13 25 25 HIS HIS A . n A 1 14 CYS 14 26 26 CYS CYS A . n A 1 15 VAL 15 27 27 VAL VAL A . n A 1 16 ALA 16 28 28 ALA ALA A . n A 1 17 VAL 17 29 29 VAL VAL A . n A 1 18 GLY 18 30 30 GLY GLY A . n A 1 19 GLU 19 31 31 GLU GLU A . n A 1 20 ASP 20 32 32 ASP ASP A . n A 1 21 CYS 21 33 33 CYS CYS A . n A 1 22 LEU 22 34 34 LEU LEU A . n A 1 23 ARG 23 35 35 ARG ARG A . n A 1 24 HIS 24 36 36 HIS HIS A . n A 1 25 CYS 25 37 37 CYS CYS A . n A 1 26 PHE 26 38 38 PHE PHE A . n A 1 27 GLU 27 39 39 GLU GLU A . n A 1 28 MET 28 40 40 MET MET A . n A 1 29 LEU 29 41 41 LEU LEU A . n A 1 30 ALA 30 42 42 ALA ALA A . n A 1 31 MET 31 43 43 MET MET A . n A 1 32 ASN 32 44 44 ASN ASN A . n A 1 33 ASP 33 45 45 ASP ASP A . n A 1 34 ALA 34 46 46 ALA ALA A . n A 1 35 SER 35 47 47 SER SER A . n A 1 36 MET 36 48 48 MET MET A . n A 1 37 GLY 37 49 49 GLY GLY A . n A 1 38 ALA 38 50 50 ALA ALA A . n A 1 39 CYS 39 51 51 CYS CYS A . n A 1 40 THR 40 52 52 THR THR A . n A 1 41 LYS 41 53 53 LYS LYS A . n A 1 42 ALA 42 54 54 ALA ALA A . n A 1 43 THR 43 55 55 THR THR A . n A 1 44 TYR 44 56 56 TYR TYR A . n A 1 45 ASP 45 57 57 ASP ASP A . n A 1 46 LEU 46 58 58 LEU LEU A . n A 1 47 VAL 47 59 59 VAL VAL A . n A 1 48 ALA 48 60 60 ALA ALA A . n A 1 49 ALA 49 61 61 ALA ALA A . n A 1 50 CYS 50 62 62 CYS CYS A . n A 1 51 GLY 51 63 63 GLY GLY A . n A 1 52 ALA 52 64 64 ALA ALA A . n A 1 53 LEU 53 65 65 LEU LEU A . n A 1 54 ALA 54 66 66 ALA ALA A . n A 1 55 LYS 55 67 67 LYS LYS A . n A 1 56 LEU 56 68 68 LEU LEU A . n A 1 57 ALA 57 69 69 ALA ALA A . n A 1 58 GLY 58 70 70 GLY GLY A . n A 1 59 THR 59 71 71 THR THR A . n A 1 60 ASN 60 72 72 ASN ASN A . n A 1 61 SER 61 73 73 SER SER A . n A 1 62 ALA 62 74 74 ALA ALA A . n A 1 63 PHE 63 75 75 PHE PHE A . n A 1 64 THR 64 76 76 THR THR A . n A 1 65 PRO 65 77 77 PRO PRO A . n A 1 66 ALA 66 78 78 ALA ALA A . n A 1 67 PHE 67 79 79 PHE PHE A . n A 1 68 ALA 68 80 80 ALA ALA A . n A 1 69 LYS 69 81 81 LYS LYS A . n A 1 70 VAL 70 82 82 VAL VAL A . n A 1 71 VAL 71 83 83 VAL VAL A . n A 1 72 ALA 72 84 84 ALA ALA A . n A 1 73 ASP 73 85 85 ASP ASP A . n A 1 74 VAL 74 86 86 VAL VAL A . n A 1 75 CYS 75 87 87 CYS CYS A . n A 1 76 ALA 76 88 88 ALA ALA A . n A 1 77 ALA 77 89 89 ALA ALA A . n A 1 78 CYS 78 90 90 CYS CYS A . n A 1 79 LYS 79 91 91 LYS LYS A . n A 1 80 LYS 80 92 92 LYS LYS A . n A 1 81 GLU 81 93 93 GLU GLU A . n A 1 82 CYS 82 94 94 CYS CYS A . n A 1 83 ASP 83 95 95 ASP ASP A . n A 1 84 LYS 84 96 96 LYS LYS A . n A 1 85 PHE 85 97 97 PHE PHE A . n A 1 86 PRO 86 98 98 PRO PRO A . n A 1 87 SER 87 99 99 SER SER A . n A 1 88 ILE 88 100 100 ILE ILE A . n A 1 89 ALA 89 101 101 ALA ALA A . n A 1 90 GLU 90 102 102 GLU GLU A . n A 1 91 CYS 91 103 103 CYS CYS A . n A 1 92 LYS 92 104 104 LYS LYS A . n A 1 93 ALA 93 105 105 ALA ALA A . n A 1 94 CYS 94 106 106 CYS CYS A . n A 1 95 GLY 95 107 107 GLY GLY A . n A 1 96 GLU 96 108 108 GLU GLU A . n A 1 97 ALA 97 109 109 ALA ALA A . n A 1 98 CYS 98 110 110 CYS CYS A . n A 1 99 GLN 99 111 111 GLN GLN A . n A 1 100 ALA 100 112 112 ALA ALA A . n A 1 101 CYS 101 113 113 CYS CYS A . n A 1 102 ALA 102 114 114 ALA ALA A . n A 1 103 GLU 103 115 115 GLU GLU A . n A 1 104 GLU 104 116 116 GLU GLU A . n A 1 105 CYS 105 117 117 CYS CYS A . n A 1 106 HIS 106 118 118 HIS HIS A . n A 1 107 LYS 107 119 119 LYS LYS A . n A 1 108 VAL 108 120 120 VAL VAL A . n A 1 109 ALA 109 121 121 ALA ALA A . n A 1 110 ALA 110 122 122 ALA ALA A . n B 1 1 GLY 1 13 13 GLY GLY B . n B 1 2 ALA 2 14 14 ALA ALA B . n B 1 3 LYS 3 15 15 LYS LYS B . n B 1 4 TYR 4 16 16 TYR TYR B . n B 1 5 LYS 5 17 17 LYS LYS B . n B 1 6 ALA 6 18 18 ALA ALA B . n B 1 7 LEU 7 19 19 LEU LEU B . n B 1 8 LEU 8 20 20 LEU LEU B . n B 1 9 ASP 9 21 21 ASP ASP B . n B 1 10 SER 10 22 22 SER SER B . n B 1 11 SER 11 23 23 SER SER B . n B 1 12 SER 12 24 24 SER SER B . n B 1 13 HIS 13 25 25 HIS HIS B . n B 1 14 CYS 14 26 26 CYS CYS B . n B 1 15 VAL 15 27 27 VAL VAL B . n B 1 16 ALA 16 28 28 ALA ALA B . n B 1 17 VAL 17 29 29 VAL VAL B . n B 1 18 GLY 18 30 30 GLY GLY B . n B 1 19 GLU 19 31 31 GLU GLU B . n B 1 20 ASP 20 32 32 ASP ASP B . n B 1 21 CYS 21 33 33 CYS CYS B . n B 1 22 LEU 22 34 34 LEU LEU B . n B 1 23 ARG 23 35 35 ARG ARG B . n B 1 24 HIS 24 36 36 HIS HIS B . n B 1 25 CYS 25 37 37 CYS CYS B . n B 1 26 PHE 26 38 38 PHE PHE B . n B 1 27 GLU 27 39 39 GLU GLU B . n B 1 28 MET 28 40 40 MET MET B . n B 1 29 LEU 29 41 41 LEU LEU B . n B 1 30 ALA 30 42 42 ALA ALA B . n B 1 31 MET 31 43 43 MET MET B . n B 1 32 ASN 32 44 44 ASN ASN B . n B 1 33 ASP 33 45 45 ASP ASP B . n B 1 34 ALA 34 46 46 ALA ALA B . n B 1 35 SER 35 47 47 SER SER B . n B 1 36 MET 36 48 48 MET MET B . n B 1 37 GLY 37 49 49 GLY GLY B . n B 1 38 ALA 38 50 50 ALA ALA B . n B 1 39 CYS 39 51 51 CYS CYS B . n B 1 40 THR 40 52 52 THR THR B . n B 1 41 LYS 41 53 53 LYS LYS B . n B 1 42 ALA 42 54 54 ALA ALA B . n B 1 43 THR 43 55 55 THR THR B . n B 1 44 TYR 44 56 56 TYR TYR B . n B 1 45 ASP 45 57 57 ASP ASP B . n B 1 46 LEU 46 58 58 LEU LEU B . n B 1 47 VAL 47 59 59 VAL VAL B . n B 1 48 ALA 48 60 60 ALA ALA B . n B 1 49 ALA 49 61 61 ALA ALA B . n B 1 50 CYS 50 62 62 CYS CYS B . n B 1 51 GLY 51 63 63 GLY GLY B . n B 1 52 ALA 52 64 64 ALA ALA B . n B 1 53 LEU 53 65 65 LEU LEU B . n B 1 54 ALA 54 66 66 ALA ALA B . n B 1 55 LYS 55 67 67 LYS LYS B . n B 1 56 LEU 56 68 68 LEU LEU B . n B 1 57 ALA 57 69 69 ALA ALA B . n B 1 58 GLY 58 70 70 GLY GLY B . n B 1 59 THR 59 71 71 THR THR B . n B 1 60 ASN 60 72 72 ASN ASN B . n B 1 61 SER 61 73 73 SER SER B . n B 1 62 ALA 62 74 74 ALA ALA B . n B 1 63 PHE 63 75 75 PHE PHE B . n B 1 64 THR 64 76 76 THR THR B . n B 1 65 PRO 65 77 77 PRO PRO B . n B 1 66 ALA 66 78 78 ALA ALA B . n B 1 67 PHE 67 79 79 PHE PHE B . n B 1 68 ALA 68 80 80 ALA ALA B . n B 1 69 LYS 69 81 81 LYS LYS B . n B 1 70 VAL 70 82 82 VAL VAL B . n B 1 71 VAL 71 83 83 VAL VAL B . n B 1 72 ALA 72 84 84 ALA ALA B . n B 1 73 ASP 73 85 85 ASP ASP B . n B 1 74 VAL 74 86 86 VAL VAL B . n B 1 75 CYS 75 87 87 CYS CYS B . n B 1 76 ALA 76 88 88 ALA ALA B . n B 1 77 ALA 77 89 89 ALA ALA B . n B 1 78 CYS 78 90 90 CYS CYS B . n B 1 79 LYS 79 91 91 LYS LYS B . n B 1 80 LYS 80 92 92 LYS LYS B . n B 1 81 GLU 81 93 93 GLU GLU B . n B 1 82 CYS 82 94 94 CYS CYS B . n B 1 83 ASP 83 95 95 ASP ASP B . n B 1 84 LYS 84 96 96 LYS LYS B . n B 1 85 PHE 85 97 97 PHE PHE B . n B 1 86 PRO 86 98 98 PRO PRO B . n B 1 87 SER 87 99 99 SER SER B . n B 1 88 ILE 88 100 100 ILE ILE B . n B 1 89 ALA 89 101 101 ALA ALA B . n B 1 90 GLU 90 102 102 GLU GLU B . n B 1 91 CYS 91 103 103 CYS CYS B . n B 1 92 LYS 92 104 104 LYS LYS B . n B 1 93 ALA 93 105 105 ALA ALA B . n B 1 94 CYS 94 106 106 CYS CYS B . n B 1 95 GLY 95 107 107 GLY GLY B . n B 1 96 GLU 96 108 108 GLU GLU B . n B 1 97 ALA 97 109 109 ALA ALA B . n B 1 98 CYS 98 110 110 CYS CYS B . n B 1 99 GLN 99 111 111 GLN GLN B . n B 1 100 ALA 100 112 112 ALA ALA B . n B 1 101 CYS 101 113 113 CYS CYS B . n B 1 102 ALA 102 114 114 ALA ALA B . n B 1 103 GLU 103 115 115 GLU GLU B . n B 1 104 GLU 104 116 116 GLU GLU B . n B 1 105 CYS 105 117 117 CYS CYS B . n B 1 106 HIS 106 118 118 HIS HIS B . n B 1 107 LYS 107 119 119 LYS LYS B . n B 1 108 VAL 108 120 120 VAL VAL B . n B 1 109 ALA 109 121 121 ALA ALA B . n B 1 110 ALA 110 122 122 ALA ALA B . n C 1 1 GLY 1 13 13 GLY GLY C . n C 1 2 ALA 2 14 14 ALA ALA C . n C 1 3 LYS 3 15 15 LYS LYS C . n C 1 4 TYR 4 16 16 TYR TYR C . n C 1 5 LYS 5 17 17 LYS LYS C . n C 1 6 ALA 6 18 18 ALA ALA C . n C 1 7 LEU 7 19 19 LEU LEU C . n C 1 8 LEU 8 20 20 LEU LEU C . n C 1 9 ASP 9 21 21 ASP ASP C . n C 1 10 SER 10 22 22 SER SER C . n C 1 11 SER 11 23 23 SER SER C . n C 1 12 SER 12 24 24 SER SER C . n C 1 13 HIS 13 25 25 HIS HIS C . n C 1 14 CYS 14 26 26 CYS CYS C . n C 1 15 VAL 15 27 27 VAL VAL C . n C 1 16 ALA 16 28 28 ALA ALA C . n C 1 17 VAL 17 29 29 VAL VAL C . n C 1 18 GLY 18 30 30 GLY GLY C . n C 1 19 GLU 19 31 31 GLU GLU C . n C 1 20 ASP 20 32 32 ASP ASP C . n C 1 21 CYS 21 33 33 CYS CYS C . n C 1 22 LEU 22 34 34 LEU LEU C . n C 1 23 ARG 23 35 35 ARG ARG C . n C 1 24 HIS 24 36 36 HIS HIS C . n C 1 25 CYS 25 37 37 CYS CYS C . n C 1 26 PHE 26 38 38 PHE PHE C . n C 1 27 GLU 27 39 39 GLU GLU C . n C 1 28 MET 28 40 40 MET MET C . n C 1 29 LEU 29 41 41 LEU LEU C . n C 1 30 ALA 30 42 42 ALA ALA C . n C 1 31 MET 31 43 43 MET MET C . n C 1 32 ASN 32 44 44 ASN ASN C . n C 1 33 ASP 33 45 45 ASP ASP C . n C 1 34 ALA 34 46 46 ALA ALA C . n C 1 35 SER 35 47 47 SER SER C . n C 1 36 MET 36 48 48 MET MET C . n C 1 37 GLY 37 49 49 GLY GLY C . n C 1 38 ALA 38 50 50 ALA ALA C . n C 1 39 CYS 39 51 51 CYS CYS C . n C 1 40 THR 40 52 52 THR THR C . n C 1 41 LYS 41 53 53 LYS LYS C . n C 1 42 ALA 42 54 54 ALA ALA C . n C 1 43 THR 43 55 55 THR THR C . n C 1 44 TYR 44 56 56 TYR TYR C . n C 1 45 ASP 45 57 57 ASP ASP C . n C 1 46 LEU 46 58 58 LEU LEU C . n C 1 47 VAL 47 59 59 VAL VAL C . n C 1 48 ALA 48 60 60 ALA ALA C . n C 1 49 ALA 49 61 61 ALA ALA C . n C 1 50 CYS 50 62 62 CYS CYS C . n C 1 51 GLY 51 63 63 GLY GLY C . n C 1 52 ALA 52 64 64 ALA ALA C . n C 1 53 LEU 53 65 65 LEU LEU C . n C 1 54 ALA 54 66 66 ALA ALA C . n C 1 55 LYS 55 67 67 LYS LYS C . n C 1 56 LEU 56 68 68 LEU LEU C . n C 1 57 ALA 57 69 69 ALA ALA C . n C 1 58 GLY 58 70 70 GLY GLY C . n C 1 59 THR 59 71 71 THR THR C . n C 1 60 ASN 60 72 72 ASN ASN C . n C 1 61 SER 61 73 73 SER SER C . n C 1 62 ALA 62 74 74 ALA ALA C . n C 1 63 PHE 63 75 75 PHE PHE C . n C 1 64 THR 64 76 76 THR THR C . n C 1 65 PRO 65 77 77 PRO PRO C . n C 1 66 ALA 66 78 78 ALA ALA C . n C 1 67 PHE 67 79 79 PHE PHE C . n C 1 68 ALA 68 80 80 ALA ALA C . n C 1 69 LYS 69 81 81 LYS LYS C . n C 1 70 VAL 70 82 82 VAL VAL C . n C 1 71 VAL 71 83 83 VAL VAL C . n C 1 72 ALA 72 84 84 ALA ALA C . n C 1 73 ASP 73 85 85 ASP ASP C . n C 1 74 VAL 74 86 86 VAL VAL C . n C 1 75 CYS 75 87 87 CYS CYS C . n C 1 76 ALA 76 88 88 ALA ALA C . n C 1 77 ALA 77 89 89 ALA ALA C . n C 1 78 CYS 78 90 90 CYS CYS C . n C 1 79 LYS 79 91 91 LYS LYS C . n C 1 80 LYS 80 92 92 LYS LYS C . n C 1 81 GLU 81 93 93 GLU GLU C . n C 1 82 CYS 82 94 94 CYS CYS C . n C 1 83 ASP 83 95 95 ASP ASP C . n C 1 84 LYS 84 96 96 LYS LYS C . n C 1 85 PHE 85 97 97 PHE PHE C . n C 1 86 PRO 86 98 98 PRO PRO C . n C 1 87 SER 87 99 99 SER SER C . n C 1 88 ILE 88 100 100 ILE ILE C . n C 1 89 ALA 89 101 101 ALA ALA C . n C 1 90 GLU 90 102 102 GLU GLU C . n C 1 91 CYS 91 103 103 CYS CYS C . n C 1 92 LYS 92 104 104 LYS LYS C . n C 1 93 ALA 93 105 105 ALA ALA C . n C 1 94 CYS 94 106 106 CYS CYS C . n C 1 95 GLY 95 107 107 GLY GLY C . n C 1 96 GLU 96 108 108 GLU GLU C . n C 1 97 ALA 97 109 109 ALA ALA C . n C 1 98 CYS 98 110 110 CYS CYS C . n C 1 99 GLN 99 111 111 GLN GLN C . n C 1 100 ALA 100 112 112 ALA ALA C . n C 1 101 CYS 101 113 113 CYS CYS C . n C 1 102 ALA 102 114 114 ALA ALA C . n C 1 103 GLU 103 115 115 GLU GLU C . n C 1 104 GLU 104 116 116 GLU GLU C . n C 1 105 CYS 105 117 117 CYS CYS C . n C 1 106 HIS 106 118 118 HIS HIS C . n C 1 107 LYS 107 119 119 LYS LYS C . n C 1 108 VAL 108 120 120 VAL VAL C . n C 1 109 ALA 109 121 121 ALA ALA C . n C 1 110 ALA 110 122 122 ALA ALA C . n D 1 1 GLY 1 13 13 GLY GLY D . n D 1 2 ALA 2 14 14 ALA ALA D . n D 1 3 LYS 3 15 15 LYS LYS D . n D 1 4 TYR 4 16 16 TYR TYR D . n D 1 5 LYS 5 17 17 LYS LYS D . n D 1 6 ALA 6 18 18 ALA ALA D . n D 1 7 LEU 7 19 19 LEU LEU D . n D 1 8 LEU 8 20 20 LEU LEU D . n D 1 9 ASP 9 21 21 ASP ASP D . n D 1 10 SER 10 22 22 SER SER D . n D 1 11 SER 11 23 23 SER SER D . n D 1 12 SER 12 24 24 SER SER D . n D 1 13 HIS 13 25 25 HIS HIS D . n D 1 14 CYS 14 26 26 CYS CYS D . n D 1 15 VAL 15 27 27 VAL VAL D . n D 1 16 ALA 16 28 28 ALA ALA D . n D 1 17 VAL 17 29 29 VAL VAL D . n D 1 18 GLY 18 30 30 GLY GLY D . n D 1 19 GLU 19 31 31 GLU GLU D . n D 1 20 ASP 20 32 32 ASP ASP D . n D 1 21 CYS 21 33 33 CYS CYS D . n D 1 22 LEU 22 34 34 LEU LEU D . n D 1 23 ARG 23 35 35 ARG ARG D . n D 1 24 HIS 24 36 36 HIS HIS D . n D 1 25 CYS 25 37 37 CYS CYS D . n D 1 26 PHE 26 38 38 PHE PHE D . n D 1 27 GLU 27 39 39 GLU GLU D . n D 1 28 MET 28 40 40 MET MET D . n D 1 29 LEU 29 41 41 LEU LEU D . n D 1 30 ALA 30 42 42 ALA ALA D . n D 1 31 MET 31 43 43 MET MET D . n D 1 32 ASN 32 44 44 ASN ASN D . n D 1 33 ASP 33 45 45 ASP ASP D . n D 1 34 ALA 34 46 46 ALA ALA D . n D 1 35 SER 35 47 47 SER SER D . n D 1 36 MET 36 48 48 MET MET D . n D 1 37 GLY 37 49 49 GLY GLY D . n D 1 38 ALA 38 50 50 ALA ALA D . n D 1 39 CYS 39 51 51 CYS CYS D . n D 1 40 THR 40 52 52 THR THR D . n D 1 41 LYS 41 53 53 LYS LYS D . n D 1 42 ALA 42 54 54 ALA ALA D . n D 1 43 THR 43 55 55 THR THR D . n D 1 44 TYR 44 56 56 TYR TYR D . n D 1 45 ASP 45 57 57 ASP ASP D . n D 1 46 LEU 46 58 58 LEU LEU D . n D 1 47 VAL 47 59 59 VAL VAL D . n D 1 48 ALA 48 60 60 ALA ALA D . n D 1 49 ALA 49 61 61 ALA ALA D . n D 1 50 CYS 50 62 62 CYS CYS D . n D 1 51 GLY 51 63 63 GLY GLY D . n D 1 52 ALA 52 64 64 ALA ALA D . n D 1 53 LEU 53 65 65 LEU LEU D . n D 1 54 ALA 54 66 66 ALA ALA D . n D 1 55 LYS 55 67 67 LYS LYS D . n D 1 56 LEU 56 68 68 LEU LEU D . n D 1 57 ALA 57 69 69 ALA ALA D . n D 1 58 GLY 58 70 70 GLY GLY D . n D 1 59 THR 59 71 71 THR THR D . n D 1 60 ASN 60 72 72 ASN ASN D . n D 1 61 SER 61 73 73 SER SER D . n D 1 62 ALA 62 74 74 ALA ALA D . n D 1 63 PHE 63 75 75 PHE PHE D . n D 1 64 THR 64 76 76 THR THR D . n D 1 65 PRO 65 77 77 PRO PRO D . n D 1 66 ALA 66 78 78 ALA ALA D . n D 1 67 PHE 67 79 79 PHE PHE D . n D 1 68 ALA 68 80 80 ALA ALA D . n D 1 69 LYS 69 81 81 LYS LYS D . n D 1 70 VAL 70 82 82 VAL VAL D . n D 1 71 VAL 71 83 83 VAL VAL D . n D 1 72 ALA 72 84 84 ALA ALA D . n D 1 73 ASP 73 85 85 ASP ASP D . n D 1 74 VAL 74 86 86 VAL VAL D . n D 1 75 CYS 75 87 87 CYS CYS D . n D 1 76 ALA 76 88 88 ALA ALA D . n D 1 77 ALA 77 89 89 ALA ALA D . n D 1 78 CYS 78 90 90 CYS CYS D . n D 1 79 LYS 79 91 91 LYS LYS D . n D 1 80 LYS 80 92 92 LYS LYS D . n D 1 81 GLU 81 93 93 GLU GLU D . n D 1 82 CYS 82 94 94 CYS CYS D . n D 1 83 ASP 83 95 95 ASP ASP D . n D 1 84 LYS 84 96 96 LYS LYS D . n D 1 85 PHE 85 97 97 PHE PHE D . n D 1 86 PRO 86 98 98 PRO PRO D . n D 1 87 SER 87 99 99 SER SER D . n D 1 88 ILE 88 100 100 ILE ILE D . n D 1 89 ALA 89 101 101 ALA ALA D . n D 1 90 GLU 90 102 102 GLU GLU D . n D 1 91 CYS 91 103 103 CYS CYS D . n D 1 92 LYS 92 104 104 LYS LYS D . n D 1 93 ALA 93 105 105 ALA ALA D . n D 1 94 CYS 94 106 106 CYS CYS D . n D 1 95 GLY 95 107 107 GLY GLY D . n D 1 96 GLU 96 108 108 GLU GLU D . n D 1 97 ALA 97 109 109 ALA ALA D . n D 1 98 CYS 98 110 110 CYS CYS D . n D 1 99 GLN 99 111 111 GLN GLN D . n D 1 100 ALA 100 112 112 ALA ALA D . n D 1 101 CYS 101 113 113 CYS CYS D . n D 1 102 ALA 102 114 114 ALA ALA D . n D 1 103 GLU 103 115 115 GLU GLU D . n D 1 104 GLU 104 116 116 GLU GLU D . n D 1 105 CYS 105 117 117 CYS CYS D . n D 1 106 HIS 106 118 118 HIS HIS D . n D 1 107 LYS 107 119 119 LYS LYS D . n D 1 108 VAL 108 120 120 VAL VAL D . n D 1 109 ALA 109 121 121 ALA ALA D . n D 1 110 ALA 110 122 122 ALA ALA D . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9E7J _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9E7J _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9E7J _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9E7J _struct.title 'Cu-bound tetrameric copper storage protein 1 with anti-rhodopsin 1D4 epitope' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9E7J _struct_keywords.text 'tetrameric copper storage protein 1, METAL BINDING PROTEIN' _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A2D2D105_METTR _struct_ref.pdbx_db_accession A0A2D2D105 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GAKYKALLDSSSHCVAVGEDCLRHCFEMLAMNDASMGACTKATYDLVAACGALAKLAGTNSAFTPAFAKVVADVCAACKK ECDKFPSIAECKACGEACQACAEECHKVAA ; _struct_ref.pdbx_align_begin 37 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9E7J A 1 ? 110 ? A0A2D2D105 37 ? 146 ? 13 122 2 1 9E7J B 1 ? 110 ? A0A2D2D105 37 ? 146 ? 13 122 3 1 9E7J C 1 ? 110 ? A0A2D2D105 37 ? 146 ? 13 122 4 1 9E7J D 1 ? 110 ? A0A2D2D105 37 ? 146 ? 13 122 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 TYR A 4 ? ALA A 30 ? TYR A 16 ALA A 42 1 ? 27 HELX_P HELX_P2 AA2 MET A 36 ? THR A 59 ? MET A 48 THR A 71 1 ? 24 HELX_P HELX_P3 AA3 PHE A 63 ? ASP A 83 ? PHE A 75 ASP A 95 1 ? 21 HELX_P HELX_P4 AA4 ILE A 88 ? ALA A 110 ? ILE A 100 ALA A 122 1 ? 23 HELX_P HELX_P5 AA5 TYR B 4 ? ALA B 30 ? TYR B 16 ALA B 42 1 ? 27 HELX_P HELX_P6 AA6 MET B 36 ? THR B 59 ? MET B 48 THR B 71 1 ? 24 HELX_P HELX_P7 AA7 PHE B 63 ? ASP B 83 ? PHE B 75 ASP B 95 1 ? 21 HELX_P HELX_P8 AA8 ILE B 88 ? ALA B 110 ? ILE B 100 ALA B 122 1 ? 23 HELX_P HELX_P9 AA9 TYR C 4 ? ALA C 30 ? TYR C 16 ALA C 42 1 ? 27 HELX_P HELX_P10 AB1 MET C 36 ? THR C 59 ? MET C 48 THR C 71 1 ? 24 HELX_P HELX_P11 AB2 PHE C 63 ? ASP C 83 ? PHE C 75 ASP C 95 1 ? 21 HELX_P HELX_P12 AB3 ILE C 88 ? ALA C 110 ? ILE C 100 ALA C 122 1 ? 23 HELX_P HELX_P13 AB4 TYR D 4 ? ALA D 30 ? TYR D 16 ALA D 42 1 ? 27 HELX_P HELX_P14 AB5 MET D 36 ? THR D 59 ? MET D 48 THR D 71 1 ? 24 HELX_P HELX_P15 AB6 PHE D 63 ? ASP D 83 ? PHE D 75 ASP D 95 1 ? 21 HELX_P HELX_P16 AB7 ILE D 88 ? ALA D 110 ? ILE D 100 ALA D 122 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _pdbx_entry_details.entry_id 9E7J _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 75 ? ? -99.46 31.32 2 1 PHE B 75 ? ? -99.46 31.32 3 1 PHE C 75 ? ? -99.46 31.32 4 1 PHE D 75 ? ? -99.46 31.32 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9E7J _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'RIGID BODY FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 5FJE _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 5FJE _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 9E7J _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.98 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 125008 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Cu-bound tetrameric copper storage protein 1' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9E7J _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 1700 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 130000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 50.0 _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 9E7J _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 295 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9E7J _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TYR N N N N 318 TYR CA C N S 319 TYR C C N N 320 TYR O O N N 321 TYR CB C N N 322 TYR CG C Y N 323 TYR CD1 C Y N 324 TYR CD2 C Y N 325 TYR CE1 C Y N 326 TYR CE2 C Y N 327 TYR CZ C Y N 328 TYR OH O N N 329 TYR OXT O N N 330 TYR H H N N 331 TYR H2 H N N 332 TYR HA H N N 333 TYR HB2 H N N 334 TYR HB3 H N N 335 TYR HD1 H N N 336 TYR HD2 H N N 337 TYR HE1 H N N 338 TYR HE2 H N N 339 TYR HH H N N 340 TYR HXT H N N 341 VAL N N N N 342 VAL CA C N S 343 VAL C C N N 344 VAL O O N N 345 VAL CB C N N 346 VAL CG1 C N N 347 VAL CG2 C N N 348 VAL OXT O N N 349 VAL H H N N 350 VAL H2 H N N 351 VAL HA H N N 352 VAL HB H N N 353 VAL HG11 H N N 354 VAL HG12 H N N 355 VAL HG13 H N N 356 VAL HG21 H N N 357 VAL HG22 H N N 358 VAL HG23 H N N 359 VAL HXT H N N 360 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TYR N CA sing N N 304 TYR N H sing N N 305 TYR N H2 sing N N 306 TYR CA C sing N N 307 TYR CA CB sing N N 308 TYR CA HA sing N N 309 TYR C O doub N N 310 TYR C OXT sing N N 311 TYR CB CG sing N N 312 TYR CB HB2 sing N N 313 TYR CB HB3 sing N N 314 TYR CG CD1 doub Y N 315 TYR CG CD2 sing Y N 316 TYR CD1 CE1 sing Y N 317 TYR CD1 HD1 sing N N 318 TYR CD2 CE2 doub Y N 319 TYR CD2 HD2 sing N N 320 TYR CE1 CZ doub Y N 321 TYR CE1 HE1 sing N N 322 TYR CE2 CZ sing Y N 323 TYR CE2 HE2 sing N N 324 TYR CZ OH sing N N 325 TYR OH HH sing N N 326 TYR OXT HXT sing N N 327 VAL N CA sing N N 328 VAL N H sing N N 329 VAL N H2 sing N N 330 VAL CA C sing N N 331 VAL CA CB sing N N 332 VAL CA HA sing N N 333 VAL C O doub N N 334 VAL C OXT sing N N 335 VAL CB CG1 sing N N 336 VAL CB CG2 sing N N 337 VAL CB HB sing N N 338 VAL CG1 HG11 sing N N 339 VAL CG1 HG12 sing N N 340 VAL CG1 HG13 sing N N 341 VAL CG2 HG21 sing N N 342 VAL CG2 HG22 sing N N 343 VAL CG2 HG23 sing N N 344 VAL OXT HXT sing N N 345 # _em_admin.current_status REL _em_admin.deposition_date 2024-11-01 _em_admin.deposition_site RCSB _em_admin.entry_id 9E7J _em_admin.last_update 2025-07-23 _em_admin.map_release_date 2025-05-07 _em_admin.title 'Cu-bound tetrameric copper storage protein 1 with anti-rhodopsin 1D4 epitope' # _em_buffer_component.buffer_id 1 _em_buffer_component.concentration 20 _em_buffer_component.concentration_units mM _em_buffer_component.formula C8H18N2O4S _em_buffer_component.id 1 _em_buffer_component.name HEPES # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.054 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 595536 _em_entity_assembly_naturalsource.organism 'Methylosinus trichosporium OB3b' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 1 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 42 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 7020 # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 6383264 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 SerialEM ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' 'patch CTF correction' 4 1 ? ? cryoSPARC 3.3 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? PHENIX 1.19.2 OTHER ? 8 ? ? ? ? ? 'MODEL REFINEMENT' ? 9 ? 1 ? PHENIX 1.19.2 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC 3.3 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? cryoSPARC 3.3 CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC 3.3 # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Eye Institute (NIH/NEI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 'R01 EY029343' _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5FJE # _atom_sites.entry_id 9E7J _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #