HEADER VIRUS 10-NOV-24 9EAA TITLE SENECA VALLEY VIRUS ALTERED PARTICLE AT ACIDIC CONDITION (A- TITLE 2 PARTICLE[C]) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN VP1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA,P1D,VIRION PROTEIN 1; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CAPSID PROTEIN VP3; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: GAMMA,P1C,VIRION PROTEIN 3; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: CAPSID PROTEIN VP2; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: BETA,P1B,VIRION PROTEIN 2; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: CAPSID PROTEIN VP4; COMPND 15 CHAIN: D; COMPND 16 FRAGMENT: UNP RESIDUES 93-150; COMPND 17 SYNONYM: P1A,RHO,VIRION PROTEIN 4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SENECA VALLEY VIRUS USA/SSV-001; SOURCE 3 ORGANISM_TAXID: 686944; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: SENECA VALLEY VIRUS USA/SSV-001; SOURCE 6 ORGANISM_TAXID: 686944; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: SENECA VALLEY VIRUS USA/SSV-001; SOURCE 9 ORGANISM_TAXID: 686944; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: SENECA VALLEY VIRUS USA/SSV-001; SOURCE 12 ORGANISM_TAXID: 686944 KEYWDS SVV, CAPSID, PHYSIOLOGICAL CONDITION, VIRUS, NON-ENTEROVIRUS, A- KEYWDS 2 PARTICLE, ALTERED PARTICLE, GENOME RELEASE, CAPSID UNCOATING, SENECA KEYWDS 3 VALLEY VIRUS, SENECAVIRUS, ONCOLYTIC VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR R.KUMARAN,M.BOSTINA REVDAT 3 01-OCT-25 9EAA 1 JRNL REVDAT 2 03-SEP-25 9EAA 1 JRNL REVDAT 1 20-AUG-25 9EAA 0 JRNL AUTH R.KUMARAN,N.JAYAWARDENA,K.-.L.CHEN,A.-.R.ERUERA, JRNL AUTH 2 J.HODGKINSON-BEAN,L.N.BURGA,M.WOLF,M.BOSTINA JRNL TITL CRYO-EM STRUCTURE OF THE SENECA VALLEY VIRUS A-PARTICLE AND JRNL TITL 2 RELATED STRUCTURAL STATES. JRNL REF J.VIROL. V. 99 74425 2025 JRNL REFN ESSN 1098-5514 JRNL PMID 40833065 JRNL DOI 10.1128/JVI.00744-25 REMARK 2 REMARK 2 RESOLUTION. 3.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, CRYOSPARC, ISOLDE, UCSF REMARK 3 CHIMERAX, ISOLDE, COOT, PHENIX, UCSF REMARK 3 CHIMERAX, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3CJI REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.360 REMARK 3 NUMBER OF PARTICLES : 817 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9EAA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1000289911. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SENECA VALLEY VIRUS USA/SSV-001 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.25 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 5.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 400.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : OTHER REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 240-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 240-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.809017 -0.500000 0.309017 462.00000 REMARK 350 BIOMT2 2 -0.500000 0.309017 -0.809017 462.00000 REMARK 350 BIOMT3 2 0.309017 -0.809017 -0.500000 462.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 462.00000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 462.00000 REMARK 350 BIOMT1 4 0.809017 -0.500000 -0.309017 231.00000 REMARK 350 BIOMT2 4 -0.500000 -0.309017 -0.809017 604.76585 REMARK 350 BIOMT3 4 0.309017 0.809017 -0.500000 88.23415 REMARK 350 BIOMT1 5 0.500000 0.309017 -0.809017 231.00000 REMARK 350 BIOMT2 5 -0.309017 -0.809017 -0.500000 604.76585 REMARK 350 BIOMT3 5 -0.809017 0.500000 -0.309017 373.76585 REMARK 350 BIOMT1 6 -0.309017 -0.809017 -0.500000 604.76585 REMARK 350 BIOMT2 6 -0.809017 0.500000 -0.309017 373.76585 REMARK 350 BIOMT3 6 0.500000 0.309017 -0.809017 231.00000 REMARK 350 BIOMT1 7 -0.809017 0.500000 -0.309017 373.76585 REMARK 350 BIOMT2 7 0.500000 0.309017 -0.809017 231.00000 REMARK 350 BIOMT3 7 -0.309017 -0.809017 -0.500000 604.76585 REMARK 350 BIOMT1 8 -0.809017 -0.500000 -0.309017 604.76585 REMARK 350 BIOMT2 8 0.500000 -0.309017 -0.809017 373.76585 REMARK 350 BIOMT3 8 0.309017 -0.809017 0.500000 231.00000 REMARK 350 BIOMT1 9 -0.309017 0.809017 -0.500000 231.00000 REMARK 350 BIOMT2 9 -0.809017 -0.500000 -0.309017 604.76585 REMARK 350 BIOMT3 9 -0.500000 0.309017 0.809017 88.23415 REMARK 350 BIOMT1 10 0.500000 -0.309017 -0.809017 373.76585 REMARK 350 BIOMT2 10 -0.309017 0.809017 -0.500000 231.00000 REMARK 350 BIOMT3 10 0.809017 0.500000 0.309017 -142.76585 REMARK 350 BIOMT1 11 0.000000 0.000000 -1.000000 462.00000 REMARK 350 BIOMT2 11 -1.000000 0.000000 0.000000 462.00000 REMARK 350 BIOMT3 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 -0.500000 -0.309017 -0.809017 604.76585 REMARK 350 BIOMT2 12 0.309017 0.809017 -0.500000 88.23415 REMARK 350 BIOMT3 12 0.809017 -0.500000 -0.309017 231.00000 REMARK 350 BIOMT1 13 -0.500000 0.309017 -0.809017 462.00000 REMARK 350 BIOMT2 13 0.309017 -0.809017 -0.500000 462.00000 REMARK 350 BIOMT3 13 -0.809017 -0.500000 0.309017 462.00000 REMARK 350 BIOMT1 14 -0.309017 -0.809017 -0.500000 604.76585 REMARK 350 BIOMT2 14 0.809017 -0.500000 0.309017 88.23415 REMARK 350 BIOMT3 14 -0.500000 -0.309017 0.809017 231.00000 REMARK 350 BIOMT1 15 -0.809017 0.500000 -0.309017 373.76585 REMARK 350 BIOMT2 15 -0.500000 -0.309017 0.809017 231.00000 REMARK 350 BIOMT3 15 0.309017 0.809017 0.500000 -142.76585 REMARK 350 BIOMT1 16 0.500000 0.309017 -0.809017 231.00000 REMARK 350 BIOMT2 16 0.309017 0.809017 0.500000 -142.76585 REMARK 350 BIOMT3 16 0.809017 -0.500000 0.309017 88.23415 REMARK 350 BIOMT1 17 -0.500000 0.309017 -0.809017 462.00000 REMARK 350 BIOMT2 17 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 17 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 18 0.000000 0.000000 -1.000000 462.00000 REMARK 350 BIOMT2 18 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 18 0.000000 -1.000000 0.000000 462.00000 REMARK 350 BIOMT1 19 -0.500000 -0.309017 -0.809017 604.76585 REMARK 350 BIOMT2 19 -0.309017 -0.809017 0.500000 373.76585 REMARK 350 BIOMT3 19 -0.809017 0.500000 0.309017 231.00000 REMARK 350 BIOMT1 20 0.000000 -1.000000 0.000000 462.00000 REMARK 350 BIOMT2 20 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 20 -1.000000 0.000000 0.000000 462.00000 REMARK 350 BIOMT1 21 -0.809017 0.500000 0.309017 231.00000 REMARK 350 BIOMT2 21 0.500000 0.309017 0.809017 -142.76585 REMARK 350 BIOMT3 21 0.309017 0.809017 -0.500000 88.23415 REMARK 350 BIOMT1 22 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 22 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 22 0.309017 -0.809017 -0.500000 462.00000 REMARK 350 BIOMT1 23 -0.309017 0.809017 -0.500000 231.00000 REMARK 350 BIOMT2 23 0.809017 0.500000 0.309017 -142.76585 REMARK 350 BIOMT3 23 0.500000 -0.309017 -0.809017 373.76585 REMARK 350 BIOMT1 24 0.500000 -0.309017 -0.809017 373.76585 REMARK 350 BIOMT2 24 0.309017 -0.809017 0.500000 231.00000 REMARK 350 BIOMT3 24 -0.809017 -0.500000 -0.309017 604.76585 REMARK 350 BIOMT1 25 -0.809017 -0.500000 -0.309017 604.76585 REMARK 350 BIOMT2 25 -0.500000 0.309017 0.809017 88.23415 REMARK 350 BIOMT3 25 -0.309017 0.809017 -0.500000 231.00000 REMARK 350 BIOMT1 26 -0.309017 -0.809017 0.500000 373.76585 REMARK 350 BIOMT2 26 -0.809017 0.500000 0.309017 231.00000 REMARK 350 BIOMT3 26 -0.500000 -0.309017 -0.809017 604.76585 REMARK 350 BIOMT1 27 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 27 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 27 -0.500000 0.309017 -0.809017 462.00000 REMARK 350 BIOMT1 28 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 28 0.000000 -1.000000 0.000000 462.00000 REMARK 350 BIOMT3 28 0.000000 0.000000 -1.000000 462.00000 REMARK 350 BIOMT1 29 0.309017 0.809017 -0.500000 88.23415 REMARK 350 BIOMT2 29 0.809017 -0.500000 -0.309017 231.00000 REMARK 350 BIOMT3 29 -0.500000 -0.309017 -0.809017 604.76585 REMARK 350 BIOMT1 30 0.309017 -0.809017 -0.500000 462.00000 REMARK 350 BIOMT2 30 -0.809017 -0.500000 0.309017 462.00000 REMARK 350 BIOMT3 30 -0.500000 0.309017 -0.809017 462.00000 REMARK 350 BIOMT1 31 -1.000000 0.000000 0.000000 462.00000 REMARK 350 BIOMT2 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 0.000000 -1.000000 462.00000 REMARK 350 BIOMT1 32 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 32 -0.500000 0.309017 -0.809017 462.00000 REMARK 350 BIOMT3 32 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 33 0.000000 -1.000000 0.000000 462.00000 REMARK 350 BIOMT2 33 0.000000 0.000000 -1.000000 462.00000 REMARK 350 BIOMT3 33 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 34 -0.809017 0.500000 0.309017 231.00000 REMARK 350 BIOMT2 34 -0.500000 -0.309017 -0.809017 604.76585 REMARK 350 BIOMT3 34 -0.309017 -0.809017 0.500000 373.76585 REMARK 350 BIOMT1 35 -0.500000 -0.309017 0.809017 231.00000 REMARK 350 BIOMT2 35 -0.309017 -0.809017 -0.500000 604.76585 REMARK 350 BIOMT3 35 0.809017 -0.500000 0.309017 88.23415 REMARK 350 BIOMT1 36 0.309017 0.809017 0.500000 -142.76585 REMARK 350 BIOMT2 36 -0.809017 0.500000 -0.309017 373.76585 REMARK 350 BIOMT3 36 -0.500000 -0.309017 0.809017 231.00000 REMARK 350 BIOMT1 37 0.809017 -0.500000 0.309017 88.23415 REMARK 350 BIOMT2 37 0.500000 0.309017 -0.809017 231.00000 REMARK 350 BIOMT3 37 0.309017 0.809017 0.500000 -142.76585 REMARK 350 BIOMT1 38 0.809017 0.500000 0.309017 -142.76585 REMARK 350 BIOMT2 38 0.500000 -0.309017 -0.809017 373.76585 REMARK 350 BIOMT3 38 -0.309017 0.809017 -0.500000 231.00000 REMARK 350 BIOMT1 39 0.309017 -0.809017 0.500000 231.00000 REMARK 350 BIOMT2 39 -0.809017 -0.500000 -0.309017 604.76585 REMARK 350 BIOMT3 39 0.500000 -0.309017 -0.809017 373.76585 REMARK 350 BIOMT1 40 -0.500000 0.309017 0.809017 88.23415 REMARK 350 BIOMT2 40 -0.309017 0.809017 -0.500000 231.00000 REMARK 350 BIOMT3 40 -0.809017 -0.500000 -0.309017 604.76585 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 462.00000 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 462.00000 REMARK 350 BIOMT1 42 0.500000 0.309017 0.809017 -142.76585 REMARK 350 BIOMT2 42 0.309017 0.809017 -0.500000 88.23415 REMARK 350 BIOMT3 42 -0.809017 0.500000 0.309017 231.00000 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 0.309017 -0.809017 -0.500000 462.00000 REMARK 350 BIOMT3 43 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 44 0.309017 0.809017 0.500000 -142.76585 REMARK 350 BIOMT2 44 0.809017 -0.500000 0.309017 88.23415 REMARK 350 BIOMT3 44 0.500000 0.309017 -0.809017 231.00000 REMARK 350 BIOMT1 45 0.809017 -0.500000 0.309017 88.23415 REMARK 350 BIOMT2 45 -0.500000 -0.309017 0.809017 231.00000 REMARK 350 BIOMT3 45 -0.309017 -0.809017 -0.500000 604.76585 REMARK 350 BIOMT1 46 -0.500000 -0.309017 0.809017 231.00000 REMARK 350 BIOMT2 46 0.309017 0.809017 0.500000 -142.76585 REMARK 350 BIOMT3 46 -0.809017 0.500000 -0.309017 373.76585 REMARK 350 BIOMT1 47 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 47 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 47 -0.809017 -0.500000 0.309017 462.00000 REMARK 350 BIOMT1 48 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 48 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 48 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 49 0.500000 0.309017 0.809017 -142.76585 REMARK 350 BIOMT2 49 -0.309017 -0.809017 0.500000 373.76585 REMARK 350 BIOMT3 49 0.809017 -0.500000 -0.309017 231.00000 REMARK 350 BIOMT1 50 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 50 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 50 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 51 0.809017 -0.500000 -0.309017 231.00000 REMARK 350 BIOMT2 51 0.500000 0.309017 0.809017 -142.76585 REMARK 350 BIOMT3 51 -0.309017 -0.809017 0.500000 373.76585 REMARK 350 BIOMT1 52 -0.809017 -0.500000 0.309017 462.00000 REMARK 350 BIOMT2 52 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 52 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 53 0.309017 -0.809017 0.500000 231.00000 REMARK 350 BIOMT2 53 0.809017 0.500000 0.309017 -142.76585 REMARK 350 BIOMT3 53 -0.500000 0.309017 0.809017 88.23415 REMARK 350 BIOMT1 54 -0.500000 0.309017 0.809017 88.23415 REMARK 350 BIOMT2 54 0.309017 -0.809017 0.500000 231.00000 REMARK 350 BIOMT3 54 0.809017 0.500000 0.309017 -142.76585 REMARK 350 BIOMT1 55 0.809017 0.500000 0.309017 -142.76585 REMARK 350 BIOMT2 55 -0.500000 0.309017 0.809017 88.23415 REMARK 350 BIOMT3 55 0.309017 -0.809017 0.500000 231.00000 REMARK 350 BIOMT1 56 0.309017 0.809017 -0.500000 88.23415 REMARK 350 BIOMT2 56 -0.809017 0.500000 0.309017 231.00000 REMARK 350 BIOMT3 56 0.500000 0.309017 0.809017 -142.76585 REMARK 350 BIOMT1 57 0.309017 -0.809017 -0.500000 462.00000 REMARK 350 BIOMT2 57 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 57 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 58 -1.000000 0.000000 0.000000 462.00000 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 462.00000 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 59 -0.309017 -0.809017 0.500000 373.76585 REMARK 350 BIOMT2 59 0.809017 -0.500000 -0.309017 231.00000 REMARK 350 BIOMT3 59 0.500000 0.309017 0.809017 -142.76585 REMARK 350 BIOMT1 60 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 60 -0.809017 -0.500000 0.309017 462.00000 REMARK 350 BIOMT3 60 0.500000 -0.309017 0.809017 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 60 REMARK 465 GLU B 61 REMARK 465 PRO B 62 REMARK 465 VAL B 63 REMARK 465 PRO B 64 REMARK 465 ALA B 65 REMARK 465 SER B 66 REMARK 465 ASP B 67 REMARK 465 SER D 40 REMARK 465 SER D 41 REMARK 465 ALA D 42 REMARK 465 SER D 43 REMARK 465 GLY D 44 REMARK 465 ALA D 45 REMARK 465 GLY D 46 REMARK 465 PRO D 47 REMARK 465 GLY D 48 REMARK 465 ASN D 49 REMARK 465 SER D 50 REMARK 465 ARG D 51 REMARK 465 GLY D 52 REMARK 465 GLY D 53 REMARK 465 LEU D 54 REMARK 465 ALA D 55 REMARK 465 GLY D 56 REMARK 465 LEU D 57 REMARK 465 LEU D 58 REMARK 465 THR D 59 REMARK 465 ASN D 60 REMARK 465 PHE D 61 REMARK 465 SER D 62 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 10 CD1 REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 LYS A 51 CE NZ REMARK 470 ASP A 68 CG OD1 OD2 REMARK 470 LEU A 113 CD1 CD2 REMARK 470 ALA A 114 CB REMARK 470 LEU A 157 CG CD1 CD2 REMARK 470 LEU A 201 CD2 REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 THR B 5 CG2 REMARK 470 THR B 17 CG2 REMARK 470 LEU B 18 CD1 CD2 REMARK 470 ARG B 58 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 59 CG1 CG2 REMARK 470 GLN B 78 CG CD OE1 NE2 REMARK 470 PHE B 79 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL B 101 CG1 REMARK 470 ILE B 115 CD1 REMARK 470 ILE B 156 CD1 REMARK 470 THR B 203 CG2 REMARK 470 LEU B 228 CD1 REMARK 470 THR C 15 CG2 REMARK 470 GLU C 38 CG CD OE1 OE2 REMARK 470 ASP C 44 CG OD1 OD2 REMARK 470 LYS C 73 CG CD CE NZ REMARK 470 LEU C 110 CD2 REMARK 470 MET C 111 CE REMARK 470 GLN C 125 CG CD OE1 NE2 REMARK 470 LEU C 132 CD2 REMARK 470 ASP C 146 CG OD1 OD2 REMARK 470 MET C 173 CE REMARK 470 ILE C 194 CD1 REMARK 470 ILE C 206 CD1 REMARK 470 THR C 225 CG2 REMARK 470 THR C 227 CG2 REMARK 470 LYS C 249 CG CD CE NZ REMARK 470 GLU C 250 CG CD OE1 OE2 REMARK 470 THR C 253 CG2 REMARK 470 ASP C 255 CG OD1 OD2 REMARK 470 GLU C 257 CG CD OE1 OE2 REMARK 470 THR C 265 CG2 REMARK 470 THR D 37 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN C 208 HG1 THR C 211 1.59 REMARK 500 OD1 ASN C 208 OG1 THR C 211 2.05 REMARK 500 OD1 ASP C 39 OG1 THR C 41 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 60 11.09 -69.43 REMARK 500 PHE A 116 -169.81 -120.77 REMARK 500 SER A 150 -179.81 -174.34 REMARK 500 SER A 229 -167.80 -75.31 REMARK 500 PRO A 253 171.41 -58.09 REMARK 500 ARG B 49 32.42 -95.26 REMARK 500 PRO B 137 170.18 -58.32 REMARK 500 GLN B 144 14.01 -141.45 REMARK 500 CYS B 152 -169.05 -67.78 REMARK 500 TYR B 177 152.21 65.56 REMARK 500 SER B 211 70.76 59.30 REMARK 500 LEU B 228 76.15 56.78 REMARK 500 ARG C 13 -1.56 78.13 REMARK 500 THR C 55 -167.93 -79.56 REMARK 500 TRP C 189 148.54 -173.34 REMARK 500 THR C 200 0.78 -69.62 REMARK 500 ASN C 234 33.93 -141.11 REMARK 500 ASP C 255 70.95 52.67 REMARK 500 MET D 20 15.34 -140.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 166 0.09 SIDE CHAIN REMARK 500 ARG A 169 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-47827 RELATED DB: EMDB REMARK 900 SENECA VALLEY VIRUS ALTERED PARTICLE AT ACIDIC CONDITION (A- REMARK 900 PARTICLE[C]) DBREF 9EAA A 1 258 UNP Q155Z9 POLG_SVV1 674 931 DBREF 9EAA B 1 238 UNP Q155Z9 POLG_SVV1 435 672 DBREF 9EAA C 12 279 UNP Q155Z9 POLG_SVV1 162 429 DBREF 9EAA D 14 72 UNP Q155Z9 POLG_SVV1 93 150 SEQRES 1 A 258 SER THR ASP ASN ALA GLU THR GLY VAL ILE GLU ALA GLY SEQRES 2 A 258 ASN THR ASP THR ASP PHE SER GLY GLU LEU ALA ALA PRO SEQRES 3 A 258 GLY SER ASN HIS THR ASN VAL LYS PHE LEU PHE ASP ARG SEQRES 4 A 258 SER ARG LEU LEU ASN VAL ILE LYS VAL LEU GLU LYS ASP SEQRES 5 A 258 ALA VAL PHE PRO ARG PRO PHE PRO THR GLN GLU GLY ALA SEQRES 6 A 258 GLN GLN ASP ASP GLY TYR PHE CYS LEU LEU THR PRO ARG SEQRES 7 A 258 PRO THR VAL ALA SER ARG PRO ALA THR ARG PHE GLY LEU SEQRES 8 A 258 TYR ALA ASN PRO SER GLY SER GLY VAL LEU ALA ASN THR SEQRES 9 A 258 SER LEU ASP PHE ASN PHE TYR SER LEU ALA CYS PHE THR SEQRES 10 A 258 TYR PHE ARG SER ASP LEU GLU VAL THR VAL VAL SER LEU SEQRES 11 A 258 GLU PRO ASP LEU GLU PHE ALA VAL GLY TRP PHE PRO SER SEQRES 12 A 258 GLY SER GLU TYR GLN ALA SER SER PHE VAL TYR ASP GLN SEQRES 13 A 258 LEU HIS VAL PRO PHE HIS PHE THR GLY ARG THR PRO ARG SEQRES 14 A 258 ALA PHE ALA SER LYS GLY GLY LYS VAL SER PHE VAL LEU SEQRES 15 A 258 PRO TRP ASN SER VAL SER SER VAL LEU PRO VAL ARG TRP SEQRES 16 A 258 GLY GLY ALA SER LYS LEU SER SER ALA THR ARG GLY LEU SEQRES 17 A 258 PRO ALA HIS ALA ASP TRP GLY THR ILE TYR ALA PHE VAL SEQRES 18 A 258 PRO ARG PRO ASN GLU LYS LYS SER THR ALA VAL LYS HIS SEQRES 19 A 258 VAL ALA VAL TYR ILE ARG TYR LYS ASN ALA ARG ALA TRP SEQRES 20 A 258 CYS PRO SER MET LEU PRO PHE ARG SER TYR LYS SEQRES 1 B 238 GLY PRO ILE PRO THR ALA PRO ARG GLU ASN SER LEU MET SEQRES 2 B 238 PHE LEU SER THR LEU PRO ASP ASP THR VAL PRO ALA TYR SEQRES 3 B 238 GLY ASN VAL ARG THR PRO PRO VAL ASN TYR LEU PRO GLY SEQRES 4 B 238 GLU ILE THR ASP LEU LEU GLN LEU ALA ARG ILE PRO THR SEQRES 5 B 238 LEU MET ALA PHE GLU ARG VAL PRO GLU PRO VAL PRO ALA SEQRES 6 B 238 SER ASP THR TYR VAL PRO TYR VAL ALA VAL PRO THR GLN SEQRES 7 B 238 PHE ASP ASP ARG PRO LEU ILE SER PHE PRO ILE THR LEU SEQRES 8 B 238 SER ASP PRO VAL TYR GLN ASN THR LEU VAL GLY ALA ILE SEQRES 9 B 238 SER SER ASN PHE ALA ASN TYR ARG GLY CYS ILE GLN ILE SEQRES 10 B 238 THR LEU THR PHE CYS GLY PRO MET MET ALA ARG GLY LYS SEQRES 11 B 238 PHE LEU LEU SER TYR SER PRO PRO ASN GLY THR GLN PRO SEQRES 12 B 238 GLN THR LEU SER GLU ALA MET GLN CYS THR TYR SER ILE SEQRES 13 B 238 TRP ASP ILE GLY LEU ASN SER SER TRP THR PHE VAL VAL SEQRES 14 B 238 PRO TYR ILE SER PRO SER ASP TYR ARG GLU THR ARG ALA SEQRES 15 B 238 ILE THR ASN SER VAL TYR SER ALA ASP GLY TRP PHE SER SEQRES 16 B 238 LEU HIS LYS LEU THR LYS ILE THR LEU PRO PRO ASP CYS SEQRES 17 B 238 PRO GLN SER PRO CYS ILE LEU PHE PHE ALA SER ALA GLY SEQRES 18 B 238 GLU ASP TYR THR LEU ARG LEU PRO VAL ASP CYS ASN PRO SEQRES 19 B 238 SER TYR VAL PHE SEQRES 1 C 268 ASP ARG VAL THR THR GLN THR ALA GLY ASN THR ALA ILE SEQRES 2 C 268 ASN THR GLN SER SER LEU GLY VAL LEU CYS ALA TYR VAL SEQRES 3 C 268 GLU ASP PRO THR LYS SER ASP PRO PRO SER SER SER THR SEQRES 4 C 268 ASP GLN PRO THR THR THR PHE THR ALA ILE ASP ARG TRP SEQRES 5 C 268 TYR THR GLY ARG LEU ASN SER TRP THR LYS ALA VAL LYS SEQRES 6 C 268 THR PHE SER PHE GLN ALA VAL PRO LEU PRO GLY ALA PHE SEQRES 7 C 268 LEU SER ARG GLN GLY GLY LEU ASN GLY GLY ALA PHE THR SEQRES 8 C 268 ALA THR LEU HIS ARG HIS PHE LEU MET LYS CYS GLY TRP SEQRES 9 C 268 GLN VAL GLN VAL GLN CYS ASN LEU THR GLN PHE HIS GLN SEQRES 10 C 268 GLY ALA LEU LEU VAL ALA MET VAL PRO GLU THR THR LEU SEQRES 11 C 268 ASP VAL LYS PRO ASP GLY LYS ALA LYS SER LEU GLN GLU SEQRES 12 C 268 LEU ASN GLU GLU GLN TRP VAL GLU MET SER ASP ASP TYR SEQRES 13 C 268 ARG THR GLY LYS ASN MET PRO PHE GLN SER LEU GLY THR SEQRES 14 C 268 TYR TYR ARG PRO PRO ASN TRP THR TRP GLY PRO ASN PHE SEQRES 15 C 268 ILE ASN PRO TYR GLN VAL THR VAL PHE PRO HIS GLN ILE SEQRES 16 C 268 LEU ASN ALA ARG THR SER THR SER VAL ASP ILE ASN VAL SEQRES 17 C 268 PRO TYR ILE GLY GLU THR PRO THR GLN SER SER GLU THR SEQRES 18 C 268 GLN ASN SER TRP THR LEU LEU VAL MET VAL LEU VAL PRO SEQRES 19 C 268 LEU ASP TYR LYS GLU GLY ALA THR THR ASP PRO GLU ILE SEQRES 20 C 268 THR PHE SER VAL ARG PRO THR SER PRO TYR PHE ASN GLY SEQRES 21 C 268 LEU ARG ASN ARG TYR THR ALA GLY SEQRES 1 D 58 ARG GLY ASN ASN GLY ASN MET THR PHE ASN TYR TYR ALA SEQRES 2 D 58 ASN THR TYR GLN ASN SER VAL ASP PHE SER THR SER SER SEQRES 3 D 58 SER ALA SER GLY ALA GLY PRO GLY ASN SER ARG GLY GLY SEQRES 4 D 58 LEU ALA GLY LEU LEU THR ASN PHE SER GLY ILE LEU ASN SEQRES 5 D 58 PRO LEU GLY TYR LEU LYS HET CA B 500 1 HETNAM CA CALCIUM ION FORMUL 5 CA CA 2+ HELIX 1 AA1 ASN A 4 GLY A 8 5 5 HELIX 2 AA2 ASN A 14 ASP A 18 5 5 HELIX 3 AA3 ASN A 32 PHE A 37 1 6 HELIX 4 AA4 ASP A 107 LEU A 113 1 7 HELIX 5 AA5 HIS A 162 THR A 164 5 3 HELIX 6 AA6 PRO A 224 LYS A 228 5 5 HELIX 7 AA7 LEU B 44 ARG B 49 1 6 HELIX 8 AA8 ASP B 93 GLN B 97 5 5 HELIX 9 AA9 THR B 99 SER B 106 1 8 HELIX 10 AB1 THR B 145 CYS B 152 1 8 HELIX 11 AB2 PRO B 234 PHE B 238 5 5 HELIX 12 AB3 PHE C 57 ASP C 61 5 5 HELIX 13 AB4 LEU C 85 ARG C 92 1 8 HELIX 14 AB5 GLN C 93 LEU C 96 5 4 HELIX 15 AB6 GLY C 99 HIS C 106 1 8 HELIX 16 AB7 SER C 151 ASN C 156 1 6 HELIX 17 AB8 SER C 164 GLY C 170 1 7 HELIX 18 AB9 ASN C 195 PHE C 202 5 8 HELIX 19 AC1 ALA D 26 ASN D 31 1 6 SHEET 1 AA1 5 THR A 2 ASP A 3 0 SHEET 2 AA1 5 SER B 164 VAL B 169 -1 O SER B 164 N ASP A 3 SHEET 3 AA1 5 ILE B 115 PHE B 121 -1 N ILE B 117 O PHE B 167 SHEET 4 AA1 5 CYS B 213 ALA B 220 -1 O PHE B 217 N THR B 118 SHEET 5 AA1 5 THR B 52 LEU B 53 -1 N THR B 52 O ALA B 218 SHEET 1 AA2 5 THR A 2 ASP A 3 0 SHEET 2 AA2 5 SER B 164 VAL B 169 -1 O SER B 164 N ASP A 3 SHEET 3 AA2 5 ILE B 115 PHE B 121 -1 N ILE B 117 O PHE B 167 SHEET 4 AA2 5 CYS B 213 ALA B 220 -1 O PHE B 217 N THR B 118 SHEET 5 AA2 5 VAL B 73 ALA B 74 -1 N VAL B 73 O ILE B 214 SHEET 1 AA3 4 ARG A 41 LYS A 47 0 SHEET 2 AA3 4 HIS A 234 ALA A 246 -1 O VAL A 235 N ILE A 46 SHEET 3 AA3 4 TYR A 118 SER A 129 -1 N THR A 126 O TYR A 238 SHEET 4 AA3 4 VAL A 178 LEU A 182 -1 O PHE A 180 N VAL A 125 SHEET 1 AA4 4 ARG A 41 LYS A 47 0 SHEET 2 AA4 4 HIS A 234 ALA A 246 -1 O VAL A 235 N ILE A 46 SHEET 3 AA4 4 TYR A 118 SER A 129 -1 N THR A 126 O TYR A 238 SHEET 4 AA4 4 LEU A 191 PRO A 192 -1 O LEU A 191 N PHE A 119 SHEET 1 AA5 4 CYS A 73 LEU A 74 0 SHEET 2 AA5 4 GLY A 215 PHE A 220 -1 O ILE A 217 N CYS A 73 SHEET 3 AA5 4 ALA A 137 PRO A 142 -1 N GLY A 139 O TYR A 218 SHEET 4 AA5 4 ARG A 169 PHE A 171 -1 O ALA A 170 N VAL A 138 SHEET 1 AA6 3 ARG A 84 PRO A 85 0 SHEET 2 AA6 3 THR A 80 VAL A 81 -1 N VAL A 81 O ARG A 84 SHEET 3 AA6 3 THR A 104 SER A 105 -1 O SER A 105 N THR A 80 SHEET 1 AA7 2 PHE A 89 LEU A 91 0 SHEET 2 AA7 2 ASN C 186 TRP C 189 -1 O TRP C 189 N PHE A 89 SHEET 1 AA8 2 SER A 151 TYR A 154 0 SHEET 2 AA8 2 LEU A 157 PRO A 160 -1 O VAL A 159 N PHE A 152 SHEET 1 AA9 2 ARG B 30 THR B 31 0 SHEET 2 AA9 2 VAL D 33 ASP D 34 1 O VAL D 33 N THR B 31 SHEET 1 AB1 2 PHE B 56 GLU B 57 0 SHEET 2 AB1 2 TYR B 69 VAL B 70 -1 O VAL B 70 N PHE B 56 SHEET 1 AB2 4 ILE B 85 PRO B 88 0 SHEET 2 AB2 4 TRP B 193 LYS B 198 -1 O LEU B 196 N ILE B 85 SHEET 3 AB2 4 LYS B 130 SER B 136 -1 N LEU B 132 O HIS B 197 SHEET 4 AB2 4 THR B 153 ASP B 158 -1 O TRP B 157 N PHE B 131 SHEET 1 AB3 3 ARG B 178 GLU B 179 0 SHEET 2 AB3 3 ASN B 110 ARG B 112 -1 N TYR B 111 O ARG B 178 SHEET 3 AB3 3 THR B 225 ARG B 227 -1 O THR B 225 N ARG B 112 SHEET 1 AB4 2 THR C 15 ALA C 19 0 SHEET 2 AB4 2 THR C 22 THR C 26 -1 O ILE C 24 N GLN C 17 SHEET 1 AB5 4 TYR C 64 ARG C 67 0 SHEET 2 AB5 4 THR C 259 ASN C 270 -1 O VAL C 262 N TYR C 64 SHEET 3 AB5 4 LEU C 110 GLN C 120 -1 N GLN C 120 O THR C 259 SHEET 4 AB5 4 GLN C 228 SER C 229 -1 O GLN C 228 N MET C 111 SHEET 1 AB6 6 TYR C 64 ARG C 67 0 SHEET 2 AB6 6 THR C 259 ASN C 270 -1 O VAL C 262 N TYR C 64 SHEET 3 AB6 6 LEU C 110 GLN C 120 -1 N GLN C 120 O THR C 259 SHEET 4 AB6 6 SER C 214 VAL C 219 -1 O VAL C 219 N TRP C 115 SHEET 5 AB6 6 VAL C 32 CYS C 34 1 N LEU C 33 O ASN C 218 SHEET 6 AB6 6 TYR D 70 LYS D 72 -1 O TYR D 70 N CYS C 34 SHEET 1 AB7 4 PHE C 80 PRO C 84 0 SHEET 2 AB7 4 TRP C 236 TYR C 248 -1 O VAL C 240 N GLN C 81 SHEET 3 AB7 4 HIS C 127 PRO C 137 -1 N LEU C 132 O MET C 241 SHEET 4 AB7 4 HIS C 204 ASN C 208 -1 O LEU C 207 N LEU C 131 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 431 0 1 19 56 0 0 6 6101 4 0 65 END